BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1195 (appC-1) DE:oligopeptide ABC transporter, permease
protein (appC)
(477 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75026 oligopeptide abc transporter, permease protein (appc... 971 0.0
pir||H71211 probable oligopeptide transport system permease prot... 561 e-159
pir||H72536 probable oligopeptide transport system permease prot... 322 7e-87
gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC... 203 3e-51
pir||T35981 probable peptide transport permease - Streptomyces c... 203 5e-51
pir||B75142 oligopeptide transport integral membrane protein. PA... 175 1e-42
pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain ... 171 1e-41
pir||C72367 oligopeptide ABC transporter, permease protein - The... 169 5e-41
pir||D71130 probable oligopeptide transport permease protein APP... 169 5e-41
pir||C71163 probable oligopeptide transport system permease prot... 161 2e-38
sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 160 3e-38
pir||C38447 sporulation initiation protein spo0KC - Bacillus sub... 160 3e-38
pir||D72424 oligopeptide ABC transporter, permease protein - The... 160 4e-38
sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 158 2e-37
dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permeas... 157 2e-37
pir||D72300 oligopeptide ABC transporter, permease protein - The... 155 8e-37
pir||S75778 oligopeptide transport system permease protein appC ... 155 1e-36
pir||F82301 peptide ABC transporter, permease protein VC0618 [im... 155 1e-36
emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methan... 154 2e-36
pir||C72282 oligopeptide ABC transporter, permease protein - The... 154 2e-36
pir||G72428 oligopeptide ABC transporter, permease protein - The... 152 7e-36
emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis] 152 9e-36
sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 152 1e-35
pir||D70431 oligopeptide transport system permease - Aquifex aeo... 151 2e-35
pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC... 149 8e-35
pir||E72371 oligopeptide ABC transporter, permease protein - The... 148 2e-34
sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 147 2e-34
pir||A75381 peptide ABC transporter, permease protein - Deinococ... 147 3e-34
emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter... 146 7e-34
pir||JC5121 oligopeptide permease-like protein - Synechococcus s... 145 1e-33
pir||E75202 dipeptide abc transporter, dipeptide-binding protein... 144 2e-33
pir||C75573 peptide ABC transporter, permease protein - Deinococ... 143 3e-33
gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC... 143 4e-33
pir||E72720 probable oligopeptide transport system permease prot... 143 6e-33
pir||A75118 dipeptide abc transporter, permease protein (dppc) P... 141 1e-32
pir||T44599 oligopeptide transport system permease protein [impo... 141 2e-32
pir||C72617 probable dipeptide transport system permease protein... 140 3e-32
gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis] 140 3e-32
pir||E71014 probable dipeptide transport system permease protein... 139 5e-32
gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1] 139 6e-32
sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 139 8e-32
pir||T34756 oligopeptide transport integral membrane protein - S... 138 1e-31
sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 138 1e-31
pir||C72393 oligopeptide ABC transporter, permease protein - The... 138 1e-31
pir||T35940 probable transport permease protein - Streptomyces c... 138 2e-31
gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhod... 137 3e-31
sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 134 2e-30
gi|11499358 dipeptide ABC transporter, permease protein (dppC) [... 134 2e-30
gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [... 134 2e-30
pir||C82356 peptide ABC transporter, permease protein VC0173 [im... 134 2e-30
pir||D82242 oligopeptide ABC transporter, permease protein VC109... 134 2e-30
gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus] 132 6e-30
gb|AAB38742.1| (U78885) transport system permease homolog [Liste... 132 1e-29
pir||E75454 peptide ABC transporter, permease protein - Deinococ... 132 1e-29
sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 131 1e-29
pir||A72421 oligopeptide ABC transporter, permease protein - The... 131 2e-29
pir||E72289 oligopeptide ABC transporter, permease protein - The... 130 3e-29
gb|AAG20459.1| (AE005118) oligopeptide transport permease protei... 129 7e-29
pir||B72284 oligopeptide ABC transporter, permease protein - The... 129 9e-29
dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permeas... 129 9e-29
gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana] 128 1e-28
gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; Dp... 127 2e-28
pir||D82442 probable peptide ABC transporter, permease protein V... 127 3e-28
dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permeas... 127 4e-28
sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 126 5e-28
sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 125 8e-28
pir||G72215 oligopeptide ABC transporter, permease protein - The... 124 2e-27
dbj|BAB04288.1| (AP001509) nickel transport system (permease) [B... 123 3e-27
pir||D64557 dipeptide ABC transporter, permease protein - Helico... 123 5e-27
pir||G75529 peptide ABC transporter, permease protein - Deinococ... 123 5e-27
gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T... 122 7e-27
gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola] 122 9e-27
emb|CAC12448.1| (AL445067) oligopeptide transport system, permea... 122 9e-27
pir||D70141 oligopeptide ABC transporter, permease protein (oppC... 122 1e-26
gi|10954944 Probable accE [Agrobacterium tumefaciens] >gi|649829... 122 1e-26
sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 120 3e-26
pir||A70789 probable peptidetransport system permease - Mycobact... 120 3e-26
gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borre... 120 4e-26
pir||C64551 oligopeptide ABC transporter, permease protein - Hel... 120 4e-26
pir||F71957 ABC transporter, permease - Helicobacter pylori (str... 120 5e-26
sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 119 6e-26
pir||T03434 probable transport protein accE - Agrobacterium tume... 119 6e-26
pir||D83082 probable permease of ABC transporter PA4504 [importe... 119 6e-26
pir||B71193 hypothetical protein PH1818 - Pyrococcus horikoshii ... 118 1e-25
dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) ... 118 1e-25
emb|CAC11409.1| (AL445063) probable dipeptide transport system p... 117 2e-25
pir||H72451 probable peptide transport system permease protein A... 116 5e-25
gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T... 116 7e-25
dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [O... 115 1e-24
sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 114 2e-24
dbj|BAA98410.1| (AP002545) oligopeptide permease [Chlamydophila ... 113 5e-24
pir||E83419 probable permease of ABC transporter PA1808 [importe... 113 5e-24
pir||A83389 probable permease of ABC transporter PA2060 [importe... 113 5e-24
gi|10954709 hypothetical ABC-transporter gene~similar to dppC ge... 113 6e-24
sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 112 8e-24
pir||F72107 peptide ABC transporter, permease protein CP0567 [im... 112 8e-24
pir||C72059 peptide ABC transporter, permease protein, probable ... 111 2e-23
pir||B82876 oligopeptide transport system permease protein UU561... 111 2e-23
gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus sol... 110 3e-23
emb|CAC11414.1| (AL445063) ABC-transporter (orf C) related prote... 110 4e-23
pir||C71510 probable oligopeptide permease - Chlamydia trachomat... 109 5e-23
gb|AAC69844.1| (AF076684) oligopeptide transporter putative memb... 109 5e-23
emb|CAC05749.1| (AL391751) putative peptide transport system int... 109 5e-23
pir||F81668 peptide ABC transporter, permease protein, probable ... 109 7e-23
pir||D71545 probable oligopeptide permease - Chlamydia trachomat... 109 9e-23
pir||G81699 peptide ABC transporter, permease protein TC0473 [im... 109 9e-23
sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 108 2e-22
gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-... 107 3e-22
emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyo... 106 8e-22
gb|AAC69839.1| (AF076683) oligopeptide transporter putative memb... 104 3e-21
sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 102 9e-21
gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus sol... 102 1e-20
sp|P33915|YEJE_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 101 2e-20
dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Ba... 100 3e-20
pir||T45277 oligopeptide transport integral membrane protein bld... 100 6e-20
pir||D81253 probable peptide ABC-transport system permease prote... 99 8e-20
dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permeas... 98 3e-19
emb|CAA68075.1| (X99740) oligopeptide transport system permease ... 96 1e-18
gb|AAC18098.1| (AF058302) membrane component of putative ABC tra... 95 2e-18
sp|P75553|OPPC_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 95 2e-18
gb|AAC67219.1| (U78968) transmembrane transport protein DppC [St... 94 4e-18
sp|P47324|OPPC_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 91 3e-17
dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus] 89 9e-17
pir||A70193 oligopeptide ABC transporter, permease protein (oppC... 87 3e-16
pir||D82170 peptide ABC transporter, permease protein VC1682 [im... 82 1e-14
gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonel... 80 4e-14
emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi] 80 4e-14
dbj|BAB13782.1| (AB038238) NikC [Vibrio parahaemolyticus] 73 6e-12
sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 72 1e-11
>pir||H75026 oligopeptide abc transporter, permease protein (appc) PAB1195 -
Pyrococcus abyssi (strain Orsay)
>gi|5459168|emb|CAB50654.1| (AJ248288) oligopeptide ABC
transporter, permease protein (appC) [Pyrococcus abyssi]
Length = 477
Score = 971 bits (2483), Expect = 0.0
Identities = 477/477 (100%), Positives = 477/477 (100%)
Query: 1 MRWVDIKDSLANFWFEFRRQKGGLLGLFLLTLLVVVALAAPILTSPDIPQKWKLPWEDTP 60
MRWVDIKDSLANFWFEFRRQKGGLLGLFLLTLLVVVALAAPILTSPDIPQKWKLPWEDTP
Sbjct: 1 MRWVDIKDSLANFWFEFRRQKGGLLGLFLLTLLVVVALAAPILTSPDIPQKWKLPWEDTP 60
Query: 61 KAVPPVWYNWFAGESLAPHKLYTINDVKMLNKGDDLGGGVRYYKFEFKYDFNYDVPPSNI 120
KAVPPVWYNWFAGESLAPHKLYTINDVKMLNKGDDLGGGVRYYKFEFKYDFNYDVPPSNI
Sbjct: 61 KAVPPVWYNWFAGESLAPHKLYTINDVKMLNKGDDLGGGVRYYKFEFKYDFNYDVPPSNI 120
Query: 121 IIKGIDIRLQDINTKANLVITVHRPDGKSVEVYSGDFMEGMVIQLASDDIARSNIISWAS 180
IIKGIDIRLQDINTKANLVITVHRPDGKSVEVYSGDFMEGMVIQLASDDIARSNIISWAS
Sbjct: 121 IIKGIDIRLQDINTKANLVITVHRPDGKSVEVYSGDFMEGMVIQLASDDIARSNIISWAS 180
Query: 181 QYESRSNLDKVVPTIVDVMKVLFGKAQTGILINPEPLKGTYTFDVELYTFNPEDQVNFDN 240
QYESRSNLDKVVPTIVDVMKVLFGKAQTGILINPEPLKGTYTFDVELYTFNPEDQVNFDN
Sbjct: 181 QYESRSNLDKVVPTIVDVMKVLFGKAQTGILINPEPLKGTYTFDVELYTFNPEDQVNFDN 240
Query: 241 LKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGG 300
LKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGG
Sbjct: 241 LKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGG 300
Query: 301 WTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQ 360
WTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQ
Sbjct: 301 WTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQ 360
Query: 361 IKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPT 420
IKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPT
Sbjct: 361 IKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPT 420
Query: 421 AVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRRL 477
AVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRRL
Sbjct: 421 AVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRRL 477
>pir||H71211 probable oligopeptide transport system permease protein appC -
Pyrococcus horikoshii >gi|3258404|dbj|BAA31087.1|
(AP000007) 474aa long hypothetical oligopeptide
transport system permease protein appC [Pyrococcus
horikoshii]
Length = 474
Score = 561 bits (1430), Expect = e-159
Identities = 285/483 (59%), Positives = 349/483 (72%), Gaps = 15/483 (3%)
Query: 1 MRWVDIKDSLANFWFEFRRQKGGLLGLFLLTLLVVVALAAPILTSPDIPQKWKLPWEDTP 60
MRWVDIKDSL+NFWFEF+RQK G+LG+ LL +++AL AP +T PDIP KWK W D P
Sbjct: 1 MRWVDIKDSLSNFWFEFKRQKTGILGIALLIFWIIIALGAPYITQPDIPDKWKTIWIDYP 60
Query: 61 KAVPPVWYNWFAGESLAPHKLYTINDV-KMLNKGDDLGGGVRYYKFEFKYDFNYDVPPSN 119
K VPP W F+G APH + ++ K + K + + Y+ YDVPP +
Sbjct: 61 KVVPPTWAGVFSGVKEAPHLMIPPEELQKYVTKSKNK------IIIDIPYNMQYDVPPQD 114
Query: 120 IIIKGIDIRLQDINTKANLVITVHRPDGKSVEVYSGDFMEGMV-IQLASDDIARSNIISW 178
I++ + K +L + V RPDG+ + + SG ++G IQ+A D R N+I+W
Sbjct: 115 IVMMHVSGNSSG-RLKPSLTLKVKRPDGEELTLLSGLKIKGSTNIQIARDTNVRRNVINW 173
Query: 179 ASQYESRSNLDKV----VPTIVDVMKVLFGKAQTGILINPEPLKGTYTFDVELYTFNPED 234
++ LD + T +D +KV+F K +L +PEPL+G Y E+
Sbjct: 174 VKM-KTGIQLDPTKEFELITTLDTLKVVFAKISPNMLDSPEPLRGEYHIIYEI-KLPRGT 231
Query: 235 QVNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVT 294
V+ +++ TGRTYGY+GTDDKGRDL+AGLVWG+R+SL +GIS AVLSVL G+ YGV
Sbjct: 232 SVDLSKAEVVLTGRTYGYLGTDDKGRDLFAGLVWGSRVSLAVGISTAVLSVLIGIFYGVA 291
Query: 295 SAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVS 354
+AY GGWTDE+MMRFQEFMASIPTLPILI+L + F GH+ L IVLLL VFGWVGIARV+
Sbjct: 292 AAYFGGWTDELMMRFQEFMASIPTLPILILLGTYFGGHIQLWQIVLLLAVFGWVGIARVA 351
Query: 355 RSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYL 414
RSMA QIKEQTYVEAAIALGAGTGRIIFKH++PQLLPYAFAQ+ALSVPGAVL EA LS+L
Sbjct: 352 RSMAYQIKEQTYVEAAIALGAGTGRIIFKHMVPQLLPYAFAQMALSVPGAVLAEASLSFL 411
Query: 415 GLGDPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
GLGDPT VTWGQILHDAQ A A +NGYWWWVIPPG+AIALV+LTFVL+GTALDRVLNPRL
Sbjct: 412 GLGDPTQVTWGQILHDAQVAGAAVNGYWWWVIPPGIAIALVALTFVLIGTALDRVLNPRL 471
Query: 475 RRL 477
RRL
Sbjct: 472 RRL 474
>pir||H72536 probable oligopeptide transport system permease protein APE1581 -
Aeropyrum pernix (strain K1) >gi|5105268|dbj|BAA80581.1|
(AP000062) 527aa long hypothetical oligopeptide
transport system permease protein [Aeropyrum pernix]
Length = 527
Score = 322 bits (816), Expect = 7e-87
Identities = 199/525 (37%), Positives = 293/525 (54%), Gaps = 65/525 (12%)
Query: 8 DSLANFWFEFRRQKGGLLGLFLLTLLVVVALAAPILTSPDIPQKWKLP---WEDTPKAVP 64
+S+ F+ E+ R G++GL L +L+ +A++ I + + W +ED PK VP
Sbjct: 12 ESVKGFFREYLRYPIGIVGLILFVILLFMAVSFEIYGDQEAIRNWFTNTQYFEDYPKTVP 71
Query: 65 PVWYNWFAGESLAPHKLYTINDVKMLN-----------KGDDLGGGVRYYKFEFKYDFNY 113
P W+ G + P + +D + +GD+ G VR ++D
Sbjct: 72 PCWFEELRGRNPTPTLVLKADDPETSQLLAEKLRASVVRGDE--GYVRLI-INMEFDVTG 128
Query: 114 DVPPSNIIIKGIDIRLQDINTKANLV----ITVHRPDGKS---VEVYSGDFME---GMVI 163
+ PP ++ N + I + RPDG VE G + G+
Sbjct: 129 NKPPVDVY----STLFMAYNVTEGFMYVEKIYLERPDGSEFVFVEKKEGPQLPVVGGLPA 184
Query: 164 QLASDDIARSNII---------------SWASQYESRSNLDK-VVPTI----VDVMKVLF 203
QL + ++ S S S+S L + V+P++ VDV +V F
Sbjct: 185 QLQQPGVRIDSVFPGMPLKKLKGSSVSFSLKSMATSQSLLQRFVIPSLQEQGVDVSQVGF 244
Query: 204 GKAQTGI---LINPEPLKGTYT--FDVELYTFN-------PEDQVNFDNLKIIFTGRTYG 251
G T + + + +P+ T FDV T+ E +++ K++ G YG
Sbjct: 245 GNIATNLYKAIFSTDPVNSLVTGSFDVLNGTYRLNIIFLAQEAEIDVQPEKLVVKGSCYG 304
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+GTDD+GRDL+ GL++GTR +LI+G+ + ++V+FG LYG+ S YLGG DE+M+RF +
Sbjct: 305 LLGTDDQGRDLFQGLLYGTRWALIVGLLTSAITVVFGSLYGIVSGYLGGIADEVMLRFAQ 364
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ S+P LP+LI+ A+ G++ +I+ L+V F W GIA V+RSMA QIK + YVEAAI
Sbjct: 365 IIYSLPALPLLILFAAIIGGNIW--VIIFLIVAFSWPGIAFVTRSMAFQIKSEPYVEAAI 422
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDA 431
A GAGT RI+ ++ PQ+LPY FA +ALSVPGAV+ EA LS+L LGDP VTWG+IL +A
Sbjct: 423 ASGAGTVRIVLLYLAPQVLPYMFASMALSVPGAVIAEASLSFLNLGDPDLVTWGKILFEA 482
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
Q A A +NGYWWWVIPPGLAIA+V +TFV +G ALD +LNP+L+R
Sbjct: 483 QDAGAALNGYWWWVIPPGLAIAVVGMTFVFIGNALDAILNPKLKR 527
>gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC-1) [Sulfolobus
solfataricus]
Length = 450
Score = 203 bits (512), Expect = 3e-51
Identities = 143/464 (30%), Positives = 227/464 (48%), Gaps = 42/464 (9%)
Query: 16 EFRRQKGGLLGLFLLTLLVV---VALAAPILTSPDIPQKWKLP--WEDTPKAVPPVWYNW 70
+F K GL+GL +L +L++ +AL+ P + W P W P+ VPP W +
Sbjct: 14 DFLSSKIGLVGLIILIILLIFTGIALSIPA----KVYVSWNNPAAWNQYPEHVPPAWLSI 69
Query: 71 FAGESLAPHKLYTINDVKMLNKGDDLGGGVRYYKFEFKYDFNYD--VPPSNIIIKGIDIR 128
F P K +T ++ +N + Y FN+ +P N+ I
Sbjct: 70 FY-----PGKYFTTEELSPINMSL-YSPAKNIFVAIITYQFNWSKVLPAYNVYF----IT 119
Query: 129 LQDINTKANLVITVHRPDGKSVEVYSGDFMEGMVIQLASDDIARSNIISWASQYESRSNL 188
++ T VI +PDG +++V + + L S R +I+S+ S ++
Sbjct: 120 SSNV-TPIEEVIYWSKPDGYTLQVNVPAGVFNVPFDLTS---IRGDILSYISSITGKT-- 173
Query: 189 DKVVPTIVD---VMKVLFGKAQTGILINPEPLKGTYTFDVELYTFNPEDQVNFDNLKIIF 245
P IV+ + LF ++ + + G Y +E+ + P +N ++I
Sbjct: 174 ----PNIVNSTVLSSALFNSPKSNFTVIEQ---GKYVVKIEIVSSLP---MNITKSRLIL 223
Query: 246 TGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEM 305
G +YG MGTD GR L G++ G +L IG+ ++++VL GV G S YLGG D +
Sbjct: 224 LGNSYGLMGTDYFGRPLDLGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSI 283
Query: 306 MMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQT 365
+ ++P LP L+ A +F + I LL+ W A ++RSMAL IK +
Sbjct: 284 IQWVTLVFLALPALPFLV--AVSFVAEPNIVIEALLIAFLSWPFYAIIARSMALSIKSNS 341
Query: 366 YVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWG 425
YVEA LG + R+ F H MP+L+P A + L VP +L L++LG+ VTWG
Sbjct: 342 YVEADKLLGIPSYRVFFTHFMPRLIPITVAYMVLGVPAGILLAQTLAFLGIAPANIVTWG 401
Query: 426 QILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRV 469
IL A+ A +NG+WWWV+ PG + +V++ FVL+G A++RV
Sbjct: 402 GILDAAETYQAQVNGWWWWVVFPGAMVVIVAIPFVLIGFAIERV 445
>pir||T35981 probable peptide transport permease - Streptomyces coelicolor
>gi|4464266|emb|CAB37469.1| (AL035559) putative peptide
transport permease [Streptomyces coelicolor A3(2)]
Length = 317
Score = 203 bits (510), Expect = 5e-51
Identities = 97/222 (43%), Positives = 145/222 (64%), Gaps = 2/222 (0%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GR L L+WG+R+SL++G+ AVLSVL G L G+T+ + GW +MMR ++
Sbjct: 94 LGTDQFGRSLLGLLIWGSRVSLLVGLLAAVLSVLIGALIGITAGHFRGWYATVMMRITDW 153
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
+PTL + I+LA+ +LG IVL + V W AR+ R+ L ++ + Y+E A A
Sbjct: 154 FLVMPTLVLAIVLATVLSR--SLGTIVLAIGVTTWPTTARLVRAQTLAVESRPYIERAKA 211
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
LG G I+ +H++P ++P AQ L + A+L EA L++LGLGDP V+WG +L DA+
Sbjct: 212 LGGGHWHIMSRHVLPNVMPLILAQTTLIISSAILAEATLAFLGLGDPAVVSWGGLLQDAR 271
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
A + +G WW+++PPG+ IA+V+L F L G A++ VLNPRL
Sbjct: 272 EAGSVSSGDWWYLVPPGIGIAVVALAFTLCGRAVEAVLNPRL 313
>pir||B75142 oligopeptide transport integral membrane protein. PAB2363 -
Pyrococcus abyssi (strain Orsay)
>gi|5458362|emb|CAB49851.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT INTEGRAL MEMBRANE PROTEIN. [Pyrococcus abyssi]
Length = 306
Score = 175 bits (439), Expect = 1e-42
Identities = 87/224 (38%), Positives = 128/224 (56%), Gaps = 1/224 (0%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
Y+GTD GRD++A L +G R S +IGI+ L+ + G+L G + Y GGW DE++M
Sbjct: 82 YLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWIDEVLMMITN 141
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
M IPT+ +LI++A A+ + +GI +++ + W AR R+ L +K + ++ A
Sbjct: 142 IMLVIPTMALLIIIA-AYLPYRGVGIESVIIGLTAWPWTARAVRAQTLSLKNREFIHLAK 200
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDA 431
G G +IIF IMP ++ Y F L G++L GL ++GLG ++ G +L A
Sbjct: 201 LSGLGDMKIIFDQIMPNIISYVFMVFILQFGGSILAAVGLDFIGLGPTRGMSLGIMLQQA 260
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
NA GYWWW IPPGL IA++ + T LD V NPRLR
Sbjct: 261 VLWNAVTLGYWWWAIPPGLVIAILITGLYFINTGLDEVFNPRLR 304
>pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain Orsay)
>gi|5458957|emb|CAB50444.1| (AJ248287) ABC TRANSPORTER
[Pyrococcus abyssi]
Length = 309
Score = 171 bits (430), Expect = 1e-41
Identities = 101/283 (35%), Positives = 151/283 (52%), Gaps = 11/283 (3%)
Query: 201 VLFGKAQTGILINPEPLKGTY-----TFDVELYTFNPEDQVNFDNLKIIFTGRTYGYM-- 253
VLF A G L P G Y ++ Y+ + +N+ I++TG+T +
Sbjct: 28 VLF--AIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKTIEVLHI 85
Query: 254 -GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
GTD +G+DL+A LV+G R SL I + A++ G+ G+ S Y GG DE++M F
Sbjct: 86 LGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELLMMFVNI 145
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
M IP++ +LI++A AF + + L++ + W +AR R+ L +K + +V +
Sbjct: 146 MLVIPSIVLLILVA-AFLEARSPEVQALIIGLTNWPWVARSVRAQTLSLKNREFVNLSKI 204
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
+G RIIF+ IMP ++ Y F L V GA+L A L ++GLG T V+ G IL A
Sbjct: 205 VGLSDLRIIFEEIMPNMISYIFMAGILQVSGAILASATLDFIGLGPTTVVSLGVILQKAI 264
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
NA G+WWW IPPGL I L+ + ++ V NPRLR
Sbjct: 265 MHNALQFGWWWWFIPPGLIITLIITALFFVNLGMEEVFNPRLR 307
>pir||C72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981046|gb|AAD35618.1|AE001728_19 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 516
Score = 169 bits (425), Expect = 5e-41
Identities = 154/511 (30%), Positives = 235/511 (45%), Gaps = 75/511 (14%)
Query: 14 WFEFRRQKGGLLGLFLLTLLVVVALAAPILTSPDIPQKWKLPWEDTPKAVPPVWYNWFAG 73
W F+R K G+ GL++L +L ++AL A L SP P + L P P + + G
Sbjct: 27 WRAFKRNKLGMFGLYVLIVLYLMALFADFL-SPHHPYEQSLKHSFAP---PTKIHREYKG 82
Query: 74 ESLAPHKLYTINDV----------KMLNKG----DDLGGGVRYY-------KFEFKYDFN 112
E + + L TI+ V +ML D G V Y F F D
Sbjct: 83 ERVGAYVLPTISYVDKATFERKFYEMLFPKRLVLDVFGTQVEYEIGKDGVTGFSFMLDEE 142
Query: 113 YDVPPSNIIIK--GIDIRLQD---------INTKANLVITVHRPDGKSVEVYSGDFMEGM 161
Y + P + +K G ++ D + TK I K + Y G + G
Sbjct: 143 YYIVPKDGTMKYAGSTTKVVDYLLFGYDEKVLTKGEADIETSSEAAK--DTYFGKY--GF 198
Query: 162 VIQLASDDIARSNIISWASQY---ESRSNLDKVVPTIVDV----------MKVLFGKAQT 208
+ L S D +I + +++ + ++D +K G A+
Sbjct: 199 RLGLNSPDEIEKVVIKEKLNMILVKKGEDIEMITGKVIDYDYKTYPVKWFVKSWGGDAKN 258
Query: 209 GILINPEPLKGTYTFDVELYTFNPEDQVNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVW 268
I Y F + + ++ N+DN + + R Y MG D GRD+W+ +V+
Sbjct: 259 RI---------GYLFWIFPFHYHLFGVDNYDNNEYV---RLY-IMGADQYGRDVWSRIVF 305
Query: 269 GTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASA 328
+RISL IG ++ +++G S Y GG DE MMRF E + S+P +LI+L S
Sbjct: 306 ASRISLSIGFIGMFITFALSLVFGGISGYYGGIVDEFMMRFSEIIMSLPGFYLLILLRSL 365
Query: 329 FKGHV----TLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKH 384
+ ++V +L GW G ARV R M L IK++ +VEAA ALG RI+F+H
Sbjct: 366 LPLDIPSTQVYVLLVFILSFIGWAGRARVIRGMVLSIKQREFVEAARALGFPDTRILFRH 425
Query: 385 IMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG--DPTAVTWGQILHDAQAANATINGYW 442
++P Y L++PG +L EA LS+LGLG +P+A +WG +L AQA N T +
Sbjct: 426 VLPNTASYLIVAATLAIPGYILGEASLSFLGLGIREPSA-SWGLML--AQAQNVTYMTKY 482
Query: 443 WWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
W++ PG+ I + L+F +G AL L+PR
Sbjct: 483 PWLLIPGIFIFITVLSFNFVGDALRDALDPR 513
>pir||D71130 probable oligopeptide transport permease protein APPC - Pyrococcus
horikoshii >gi|3257219|dbj|BAA29902.1| (AP000003) 283aa
long hypothetical oligopeptide transport permease
protein APPC [Pyrococcus horikoshii]
Length = 283
Score = 169 bits (425), Expect = 5e-41
Identities = 88/224 (39%), Positives = 136/224 (60%), Gaps = 5/224 (2%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
MGTD+ GRD+++ ++WGTR SL++G+ A LS + GVL G + Y GG D+++ R E
Sbjct: 60 MGTDNLGRDIFSRVLWGTRTSLLVGLVAAGLSAIIGVLVGGVAGYYGGTIDDILSRITEI 119
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
IP + +++ S F + +IVL L++ W AR+ R+ AL +KE+ +++A
Sbjct: 120 FLVIPGFFLALLVVSIFGSSLLNIMIVLGLLI--WPSNARLMRAQALSLKEREFIQALRV 177
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
G RI+ +HI+P + A L + GA++TEAGLS++GLGDP V+WG+++++ Q
Sbjct: 178 AGVSDLRIVLRHIIPNGIQPIIANTFLQMAGAIITEAGLSFIGLGDPNVVSWGKMIYEGQ 237
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
I YWW I PG+ + L L LLG L +LNP+LRR
Sbjct: 238 ---IYITTYWWVPIFPGVFLVLTVLALNLLGDGLLTLLNPKLRR 278
>pir||C71163 probable oligopeptide transport system permease protein AppC -
Pyrococcus horikoshii >gi|3256909|dbj|BAA29592.1|
(AP000002) 304aa long hypothetical oligopeptide
transport system permease protein AppC [Pyrococcus
horikoshii]
Length = 304
Score = 161 bits (402), Expect = 2e-38
Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 1/223 (0%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD +G+DL+ LV+G R SL + A++ + G+ G S Y GG DE++M F
Sbjct: 81 LGTDKEGKDLYTELVYGLRTSLWVAFLAAIIGTITGITIGFVSGYKGGLVDELLMMFVNI 140
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
M IP++ +LI++A+ + + I L++ + W +AR R+ L +K + +V +
Sbjct: 141 MLVIPSIVLLILVAAYLEAR-SPEIQALIIGLTNWPWVARSVRAQTLSLKNREFVHMSKI 199
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
+G G RII + I+P ++ Y F L V GA+L A L ++GLG T V+ G IL A
Sbjct: 200 MGVGDLRIIVEDILPNMISYIFMTGILQVSGAILASATLDFIGLGPTTMVSLGVILQKAI 259
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
NA G+WWW IPPGL I L+ + + L+ V NPRLR
Sbjct: 260 MHNALQFGWWWWFIPPGLFITLIITSLFFINLGLEEVFNPRLR 302
>sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442409|pir||A69669 oligopeptide ABC transporter
(permease) oppC - Bacillus subtilis
>gi|40007|emb|CAA39789.1| (X56347) OppC [Bacillus
subtilis] >gi|2633499|emb|CAB13002.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 305
Score = 160 bits (401), Expect = 3e-38
Identities = 89/227 (39%), Positives = 135/227 (59%), Gaps = 8/227 (3%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTDD GRD++ G RIS+ IG++ AVL +L GV++G S + GG TDE+MMR +
Sbjct: 85 WFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIAD 144
Query: 312 FMASIPTLPILIMLASAF-KGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAA 370
+ ++P+L ++I+L KG T I++ + + GW+ +AR+ R LQ+K Q YV A+
Sbjct: 145 ILWAVPSLLMVILLMVVLPKGLFT---IIIAMTITGWINMARIVRGQVLQLKNQEYVLAS 201
Query: 371 IALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQILH 429
LGA T R++FKHI+P + + L+VP A+ TEA LSYLGLG P + +WG +
Sbjct: 202 QTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMAS 261
Query: 430 DAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
D A + Y W + P I + F ++G L L+P+LR+
Sbjct: 262 DGLPA---LTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK 305
>pir||C38447 sporulation initiation protein spo0KC - Bacillus subtilis
>gi|143606|gb|AAA62690.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 305
Score = 160 bits (401), Expect = 3e-38
Identities = 89/227 (39%), Positives = 135/227 (59%), Gaps = 8/227 (3%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTDD GRD++ G RIS+ IG++ AVL +L GV++G S + GG TDE+MMR +
Sbjct: 85 WFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIAD 144
Query: 312 FMASIPTLPILIMLASAF-KGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAA 370
+ ++P+L ++I+L KG T I++ + + GW+ +AR+ R LQ+K Q YV A+
Sbjct: 145 ILWAVPSLLMVILLMVVLPKGLFT---IIIAMTITGWINMARIVRGQVLQLKNQEYVLAS 201
Query: 371 IALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQILH 429
LGA T R++FKHI+P + + L+VP A+ TEA LSYLGLG P + +WG +
Sbjct: 202 QTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMAS 261
Query: 430 DAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
D A + Y W + P I + F ++G L L+P+LR+
Sbjct: 262 DGLPA---LTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK 305
>pir||D72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980545|gb|AAD35153.1|AE001692_10 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 362
Score = 160 bits (400), Expect = 4e-38
Identities = 90/225 (40%), Positives = 133/225 (59%), Gaps = 9/225 (4%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD GRD+++ +++G RIS IG+ LS++ G++ G S Y GG D + R EF+
Sbjct: 138 GTDRLGRDVFSRILYGARISTTIGLVGVFLSMVLGIIIGGISGYYGGKIDNFIQRTIEFL 197
Query: 314 ASIPTLPILIMLASAFKGH-----VTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVE 368
SIPT+P+ + LA+A + V I V+L ++ GW G+ARV RS L +K++ +V
Sbjct: 198 ISIPTIPLWMALAAALPRYWSQIKVYFAITVILSLI-GWTGLARVVRSKFLSLKDEDFVV 256
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQI 427
AA GA RIIFKH++P L + A LS+PG +L E GLS+LGLG P A++WG +
Sbjct: 257 AARLAGASEWRIIFKHMLPSLTSHLIASATLSIPGMILGETGLSFLGLGLRPPAISWGVL 316
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNP 472
L +AQ N + W++ PGL + + L F +G L +P
Sbjct: 317 LQEAQ--NIRTVALYPWLLIPGLFVIITVLCFNFVGDGLRDAADP 359
>sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|98273|pir||S16649 dipeptide ABC transporter
(permease) - Bacillus subtilis
>gi|2632015|emb|CAA05574.1| (AJ002571) DppC [Bacillus
subtilis] >gi|2633648|emb|CAB13151.1| (Z99110) dipeptide
ABC transporter (permease) [Bacillus subtilis]
Length = 320
Score = 158 bits (395), Expect = 2e-37
Identities = 87/226 (38%), Positives = 129/226 (56%), Gaps = 5/226 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD+ GRD++ +G RISL +G+ A++ L GV+YG + Y GG D +MMR E
Sbjct: 99 WFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGRIDSIMMRIIE 158
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ +P L ++I+L LG I++ L V GWVG+AR+ R LQIK YV A+
Sbjct: 159 VLYGLPYLLVVILLMVLMGPG--LGTIIVALTVTGWVGMARIVRGQVLQIKNYEYVLASK 216
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
GA T RII K+++P + Q+ L+VP A+ E+ LS+LGLG +WG + +D
Sbjct: 217 TFGAKTFRIIRKNLLPNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMAND 276
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
++G+WW + P I+L F +LG L L+P+LRR
Sbjct: 277 --GLPTILSGHWWRLFFPAFFISLTMYAFNVLGDGLQDALDPKLRR 320
>dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 157 bits (394), Expect = 2e-37
Identities = 86/228 (37%), Positives = 131/228 (56%), Gaps = 6/228 (2%)
Query: 247 GRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMM 306
G + ++GTD GRD+W+ +V+G+RISL++G++ VL+ L GV G+ + + GGW D
Sbjct: 78 GSSEHFLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGFYGGWLDTAF 137
Query: 307 MRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTY 366
MR + SIP + + +++ S F V ++ +L V WV AR+ R L IKE+ +
Sbjct: 138 MRLVDSFLSIPNILLALVILSVFGPGV--WTLIFVLGVTNWVNYARLVRGEVLSIKEREF 195
Query: 367 VEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWG 425
V+AA A+G ++ +H++P ++ LSV ++ EA LS+LGLG P ++WG
Sbjct: 196 VKAARAIGVKNRMVMVRHLLPNVVSPFIVISTLSVATTIILEASLSFLGLGIQPPDISWG 255
Query: 426 QILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
IL D + AT WW PGLAI L L + LG L VL+PR
Sbjct: 256 GILSDGRDYIAT---SWWLATFPGLAITLTVLGIIFLGDWLRDVLDPR 300
>pir||D72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981606|gb|AAD36140.1|AE001766_6 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 367
Score = 155 bits (389), Expect = 8e-37
Identities = 97/290 (33%), Positives = 147/290 (50%), Gaps = 28/290 (9%)
Query: 209 GILINPEPLKGTYTFDVE-LYTFNPEDQVNFDNLKIIFTGRTYGY--------------- 252
G I P TYT D+E L ED+ +K G Y +
Sbjct: 76 GKFIGPFVYGYTYTVDLETLRRIYKEDKSKIFKIKFFVRGDEYKFWGIWKTNIHFIGVED 135
Query: 253 -----MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMM 307
+GTD GRD+ + +++G RIS IG+ LS + GV G S Y GG D +
Sbjct: 136 GHMFLLGTDSLGRDMLSRIIYGARISTSIGLIGVFLSFILGVAIGGISGYFGGAVDNFIQ 195
Query: 308 RFQEFMASIPTLPILIMLASAFKGHV----TLGIIVLLLVVFGWVGIARVSRSMALQIKE 363
R E + SIPT+P+ + L++A + +IV++L + GW +ARV RS L ++E
Sbjct: 196 RTIEIIKSIPTIPLWLALSAALPQNWPPLRVYFVIVIILSLTGWTDLARVVRSRFLSLRE 255
Query: 364 QTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAV 422
+ +V AA +GA RIIF+H++P + + A I LS+PG +L E LS+LGLG P +
Sbjct: 256 EDFVMAAKFMGASEARIIFRHMLPSFMSHLIASITLSIPGMILGETSLSFLGLGLRPPVI 315
Query: 423 TWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNP 472
+WG +L +AQ N T+ + W++ P + + L F +G L +P
Sbjct: 316 SWGVLLQEAQ--NLTVVALYPWLLIPVVFVITTVLCFNFVGDGLRDAADP 363
>pir||S75778 oligopeptide transport system permease protein appC - Synechocystis
sp. (strain PCC 6803) >gi|1001269|dbj|BAA10513.1|
(D64003) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 371
Score = 155 bits (387), Expect = 1e-36
Identities = 92/230 (40%), Positives = 135/230 (58%), Gaps = 14/230 (6%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD++GRD ++ L++G RISL IG+ +S G++ G + Y GGW D ++MR E
Sbjct: 143 LGTDEQGRDQFSRLLFGGRISLFIGLIGITISFPLGMVVGGIAGYFGGWLDVVLMRLVEV 202
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVF----GWVGIARVSRSMALQIKEQTYVE 368
+ +IP + +L+ LA+ ++ LL+VV W G+ARV R L +K+Q YV+
Sbjct: 203 LMTIPGIYLLVALAAVLPPGLSSAQRFLLIVVITSFISWSGLARVIRGQVLSLKQQEYVQ 262
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG----DPTAVTW 424
AA A+GAG RII +HI+PQ Y L+VPG ++ E+ LS +GLG DP +W
Sbjct: 263 AAKAMGAGAPRIIVRHILPQTASYIIISATLAVPGFIVAESVLSLIGLGIQQPDP---SW 319
Query: 425 GQILHDAQAANATINGYWWWVI-PPGLAIALVSLTFVLLGTALDRVLNPR 473
G +L + A NA+I W++ PP + I L L F LLG L L+PR
Sbjct: 320 GNLL--SIATNASILVLQPWLVWPPAVLIILTVLAFNLLGDGLRDALDPR 367
>pir||F82301 peptide ABC transporter, permease protein VC0618 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655051|gb|AAF93784.1| (AE004147) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 341
Score = 155 bits (387), Expect = 1e-36
Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 1/223 (0%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GT GRD+W+ + +G R+SL +G + + GV++ Y GG D+ +
Sbjct: 86 LGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTAAMNI 145
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
M IP P+L +LA AF G I L++ W ARV RS + ++E+ +V+AA
Sbjct: 146 MLVIPQYPLLFVLA-AFIGEAGPLTIALIIGCTSWAWGARVVRSQTMALREKEFVKAAEV 204
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
LG + RIIF I+P L+ A SV A++ EA +S+LGLGDP ++WG +L++ Q
Sbjct: 205 LGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLGDPNTISWGIMLYNVQ 264
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
+++ + G WW ++ P L++ L+ LL A+D + NP+LR
Sbjct: 265 TSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLR 307
>emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 322
Score = 154 bits (386), Expect = 2e-36
Identities = 74/215 (34%), Positives = 128/215 (59%), Gaps = 2/215 (0%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GT+D G D+ + LV+G ++SL +G + A++S L G + G+ S Y G DE++M F +
Sbjct: 96 LGTNDIGNDILSELVYGAKVSLTVGFAAALVSTLIGTILGLCSGYFRGAVDELLMGFTDI 155
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
+ IP +P++I+L + + ++ I+V +L + W ARV+RS LQ++E YV++A
Sbjct: 156 VLIIPKIPLIIVLGAYLQP--SIWILVPVLGLLSWESTARVTRSKTLQLRETGYVKSARC 213
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
+G + I+F I+P L + L+ A+++EA LS+LGL D + +WG +L A
Sbjct: 214 MGFSSQHIMFSDILPNLYHVLLPKFMLATASAMISEASLSFLGLSDVSMKSWGTMLSFAF 273
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALD 467
+ I WWW +PPG+ I L ++ L+G ++
Sbjct: 274 SRGGFIRDMWWWYLPPGICITLCVISIALIGFGIE 308
>pir||C72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981774|gb|AAD36296.1|AE001778_17 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 282
Score = 154 bits (385), Expect = 2e-36
Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 1/226 (0%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++GT+ G+D++ LV+G R SL +G+ L+ + G+L G + Y GGW DE++M F
Sbjct: 58 WLGTNTFGQDIFTQLVYGLRSSLFVGVLGGTLATVIGLLIGFVAGYKGGWFDELLMMFTN 117
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ IPTL +LI++A A+ + + I +++ + W AR R+ L +K + +V+ A
Sbjct: 118 ILMVIPTLALLIIIA-AYLPYRGVFIESIIIGLTAWPWTARAVRAQTLSLKTREFVDLAR 176
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDA 431
+IIF IMP ++ Y F L GA+L GL ++GLG ++ G ++ A
Sbjct: 177 ITARKPMKIIFGEIMPNMMSYVFMVFILQFGGAILAATGLDFIGLGPTRGISLGIMMQQA 236
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRRL 477
NA G WWW I PG I L+ T ++ LD V NP+LR +
Sbjct: 237 TLWNAIQLGMWWWAITPGAVITLMVATLYVMNAGLDEVFNPKLREM 282
>pir||G72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980513|gb|AAD35123.1|AE001690_17 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 280
Score = 152 bits (381), Expect = 7e-36
Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GRD+ A L+ G R SL IG A++S++ G + G SA G D+++M
Sbjct: 57 LGTDTYGRDVLAQLLHGIRSSLYIGFLAAIISLVIGTIIGSFSAVKRGIVDDVLMGITNI 116
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
+ + P++ I I++AS K ++ ++ ++L +F W AR R+ + + + YV ++
Sbjct: 117 VLTTPSILIAILIASYLKVR-SVEMVAVILGLFQWPWFARAIRAQLMSVMSREYVYLSVM 175
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
G R++ + ++P + YAF L + G ++ EAGLS +GLG ++ G +L A
Sbjct: 176 AGYSDLRLVIEDLIPTIATYAFMSFVLFINGGIMGEAGLSLIGLGPTQGISLGIMLQWAV 235
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
A G WWW +PPGLAI V+ + +++ TA+D V NPRLR
Sbjct: 236 LMEAVRRGLWWWFVPPGLAIVAVTASLLVISTAMDEVFNPRLR 278
>emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis]
Length = 320
Score = 152 bits (380), Expect = 9e-36
Identities = 85/226 (37%), Positives = 127/226 (55%), Gaps = 5/226 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD+ GRD++ +G RISL +G+ A++ L GV+YG + Y GG D +MMR E
Sbjct: 99 WFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGRIDSIMMRIIE 158
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ +P L ++I+L LG I++ L V GWVG+AR+ R LQIK YV A+
Sbjct: 159 VLYGLPYLLVVILLMVLMGPG--LGTIIVALTVTGWVGMARIVRGQVLQIKNYEYVLASK 216
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
GA T RII K+++ + Q+ L+VP A+ E+ LS+LGLG +WG + +D
Sbjct: 217 TFGAKTFRIIRKNLLRNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMAND 276
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
++G+WW + P I+ F +LG L L+P+LRR
Sbjct: 277 --GLPTILSGHWWRLFFPAFFISSTMYAFNVLGDGLQDALDPKLRR 320
>sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075086|pir||D64184 oligopeptide transport system
permease protein oppC - Haemophilus influenzae (strain
Rd KW20) >gi|1574677|gb|AAC22776.1| (U32792)
oligopeptide ABC transporter, permease protein (oppC)
[Haemophilus influenzae Rd]
Length = 311
Score = 152 bits (379), Expect = 1e-35
Identities = 91/249 (36%), Positives = 137/249 (54%), Gaps = 7/249 (2%)
Query: 228 YTFNPEDQVNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLF 287
+ F ED +++ + T Y + GTD GRDL G RISL++GI+ A +SV
Sbjct: 69 FPFTYED-TDWNMMSAAPTMEGYHFFGTDASGRDLLVRTAIGGRISLLVGIAGAFISVTI 127
Query: 288 GVLYGVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGW 347
G +YG S Y+GG TD +MMRF E ++S P + +I+L + F ++ L I + + W
Sbjct: 128 GTIYGAISGYVGGKTDMLMMRFLEILSSFPFMFFVILLVTLFGQNIFL--IFIAIGAIAW 185
Query: 348 VGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLT 407
+G+AR+ R L +K + +VEAAI G +II KHI+P +L +L VPG +L
Sbjct: 186 LGLARIVRGQTLSLKNKEFVEAAIVCGVPRRQIILKHIIPNVLGLVAVYASLEVPGLILF 245
Query: 408 EAGLSYLGLGDPTAV-TWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTAL 466
E+ LS+LGLG + +WG +L D AA ++ W +I P + L F +G L
Sbjct: 246 ESFLSFLGLGTQEPMSSWGALLSDG-AAQMEVSP--WLLIFPAFFLCLTLFCFNFIGDGL 302
Query: 467 DRVLNPRLR 475
L+P+ R
Sbjct: 303 RDALDPKDR 311
>pir||D70431 oligopeptide transport system permease - Aquifex aeolicus
>gi|2983881|gb|AAC07433.1| (AE000743) oligopeptide
transport system permease [Aquifex aeolicus]
Length = 331
Score = 151 bits (377), Expect = 2e-35
Identities = 89/221 (40%), Positives = 125/221 (56%), Gaps = 7/221 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GRD+++ L++G R SL + + + G L G S Y GG D ++MR E
Sbjct: 104 LGTDKLGRDVFSRLLYGGRYSLGVALIGTFTTFFIGALVGGISGYFGGKVDTLIMRLVEI 163
Query: 313 MASIPTLPILIMLASAFKGHVTLG----IIVLLLVVFGWVGIARVSRSMALQIKEQTYVE 368
+ SIP +L+ L S F ++ G IIV +L GW G+ARV R M L I+E+ +V
Sbjct: 164 LMSIPAFYLLLSLRSVFPLELSSGEVFLIIVFILSFLGWAGLARVVRGMVLSIREKEFVL 223
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQI 427
AA GA + RIIFKHI+P Y +S+P +L EA LS LGLG V +WG +
Sbjct: 224 AAKTYGASSLRIIFKHILPNTYFYLIVSATMSIPAFILGEASLSLLGLGIQEPVPSWGNM 283
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDR 468
L ++ N ++ ++ W+ PG+AI L L F LLG AL R
Sbjct: 284 L--SEVRNVSVLTFYPWLASPGVAIFLTILAFNLLGDALLR 322
>pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001402|dbj|BAA10024.1| (D63999) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 294
Score = 149 bits (372), Expect = 8e-35
Identities = 85/245 (34%), Positives = 142/245 (57%), Gaps = 15/245 (6%)
Query: 232 PEDQVNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLY 291
P DQ++F + + + +GT+D G+D A L+ G RISL +G+S +S+ G L
Sbjct: 50 PIDQIDFSQTAVPPSWQHP--LGTNDLGQDQLARLLIGGRISLAVGLSAMAVSLTLGTLI 107
Query: 292 GVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLG---------IIVLLL 342
G + Y GGW D ++MR + ++P LP+++++ F+ VT ++VLL+
Sbjct: 108 GAIAGYFGGWWDVILMRITDLFLALPQLPLVLLVVYLFREPVTRATSPEKGIFILVVLLI 167
Query: 343 VVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVP 402
+ W+ +AR+ R L+++E +V+AAIA+GAG+ II++H++P +L +L+V
Sbjct: 168 GLLNWMSVARLVRGNILRLREMEFVKAAIAMGAGSNHIIWRHLLPNVLNLIIVAASLAVG 227
Query: 403 GAVLTEAGLSYLGLGDPTAV-TWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVL 461
A++TE+ LS+LGLG P V TWGQ+L+ A+ T + PGLAI + L+
Sbjct: 228 NAIITESTLSFLGLGFPPDVPTWGQMLYTAKDYLETAP---LMAVFPGLAIFITVLSVNY 284
Query: 462 LGTAL 466
LG +
Sbjct: 285 LGDGI 289
>pir||E72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981013|gb|AAD35587.1|AE001726_21 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 313
Score = 148 bits (369), Expect = 2e-34
Identities = 81/218 (37%), Positives = 124/218 (56%), Gaps = 3/218 (1%)
Query: 259 GRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPT 318
GRD+ G+VWGTR + IG+ V + +L GV G S Y GGW DE++MR + SIP
Sbjct: 97 GRDILYGIVWGTRTAFKIGLIVTLARLLIGVFIGSISGYFGGWIDEVLMRITDIFLSIPF 156
Query: 319 LPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTG 378
L ++L + L +++ ++VFGW+G AR+ R LQ++E+ +V AA A+G
Sbjct: 157 LIAAVVLTTVL--GTGLDKVMIAMIVFGWMGAARLIRGNILQVREEQFVLAAKAIGVPDF 214
Query: 379 RIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTA-VTWGQILHDAQAANAT 437
II KH++P + ++++ V+T A LS+LGLG P WG IL ++
Sbjct: 215 LIILKHVLPNTIFPVLIWASMNMGSLVITAAVLSFLGLGAPQGYADWGSILSYSRDWMME 274
Query: 438 INGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
I +W+ ++ PG A+ L L + LLG AL +PRL+
Sbjct: 275 IGKHWYALVYPGTAMVLFVLGWNLLGDALRDAFDPRLK 312
>sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC
>gi|2126890|pir||I40547 oligopeptide ABC transporter
(permease) appC - Bacillus subtilis
>gi|677947|gb|AAA62360.1| (U20909) AppC [Bacillus
subtilis] >gi|2633494|emb|CAB12997.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 303
Score = 147 bits (368), Expect = 2e-34
Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 4/222 (1%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
MGTD GRD+++ +++G R+SL++G + V S+L G + G + Y G D ++MR +
Sbjct: 82 MGTDKFGRDIFSRILYGARVSLLVGFASVVGSILIGTVLGALAGYFRGIVDAVIMRVVDI 141
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
+ SIP + +LI L + FK V ++L+ + GW AR+ R L ++ + YV AA
Sbjct: 142 VLSIPDIFLLITLVTIFKPGVDK--LILIFCLTGWTTTARLVRGEFLSLRSREYVLAAKT 199
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
+G T +IIF HI+P L L V +L E+ LSYLG G P +WG +L DA
Sbjct: 200 IGTKTHKIIFSHILPNALGPIIVSATLKVGSVILAESALSYLGFGIQPPIASWGNMLQDA 259
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
Q I WW+ + PGL I + L F +G L L+P+
Sbjct: 260 QNFTVMIQA-WWYPLFPGLFILMTVLCFNFVGDGLRDALDPK 300
>pir||A75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459332|gb|AAF11131.1|AE002000_7
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 376
Score = 147 bits (367), Expect = 3e-34
Identities = 86/230 (37%), Positives = 136/230 (58%), Gaps = 7/230 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+G+D+ GRD ++ +++G++ISL IGI ++LS++ G++ G + Y G D ++MR E
Sbjct: 148 LGSDNFGRDQFSRIMYGSQISLTIGIIASLLSLVLGLVLGGIAGYFRGLADTLIMRLVEV 207
Query: 313 MASIPTLPILIMLASAFKGH----VTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVE 368
+++IP L +LI+L + F + I+ LL GW GIARV R L +E YV+
Sbjct: 208 LSAIPDLFLLILLRAMFPLEANPILVFYIVGGLLAFIGWGGIARVVRGQILSGREMDYVQ 267
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG--DPTAVTWGQ 426
AA ALGA RII +H++P + ++L++PG +LTE+GLS++G+G +P A +WG
Sbjct: 268 AANALGASDARIIGQHLLPNSATFIIVAMSLAIPGYILTESGLSFIGIGIVEPYA-SWGS 326
Query: 427 ILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
+L AQ WV+ PG+ I L L + +G L +PR RR
Sbjct: 327 LLKLAQDGGFESLDTRPWVLLPGVFIMLAVLGWQFVGDGLRDAFDPRRRR 376
>emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 301
Score = 146 bits (364), Expect = 7e-34
Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 10/227 (4%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GRD+ + +V GTR+SL++G A+L+ + G + G+ S Y GGW D +MR +
Sbjct: 81 LGTDQLGRDMLSRVVHGTRVSLLVGAGAALLAGVIGTVVGLASGYFGGWADRTLMRLADV 140
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVV--FGWVGIARVSRSMALQIKEQTYVEAA 370
+ P+L +LA A G + G+ V+++V+ GWV ARV RS + ++ + +V A
Sbjct: 141 QLAFPSL----LLALAVVGFLGSGLWVVIVVLGFTGWVSYARVVRSEVMSLRTRDFVTEA 196
Query: 371 IALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDP-TAVTWGQILH 429
A+G I+ +H++P ++ L V A++ EA LSYLGLG P VTWG +L
Sbjct: 197 RAIGVTDVTIMRRHLLPNVMAPLATIGTLHVAAAIVAEASLSYLGLGVPKETVTWGGMLA 256
Query: 430 DAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
D Q T WW + PG+A+ L SL + G AL V +P+ R
Sbjct: 257 DGQLYLGT---SWWVAVFPGIALMLTSLAINITGDALRDVADPKAYR 300
>pir||JC5121 oligopeptide permease-like protein - Synechococcus sp
>gi|1332418|dbj|BAA12725.1| (D85103) OppC-like protein
[Synechococcus sp.]
Length = 351
Score = 145 bits (362), Expect = 1e-33
Identities = 81/229 (35%), Positives = 132/229 (57%), Gaps = 12/229 (5%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTDD+GRD ++ L++G+RISL +G+ +L+ G+L G + Y GGW D ++MR E
Sbjct: 126 LGTDDQGRDQFSRLLYGSRISLSVGLVGVILTFPLGILVGGIAGYWGGWVDALIMRLVEV 185
Query: 313 MASIPTLPILIMLASAFKGHVTLG----IIVLLLVVFGWVGIARVSRSMALQIKEQTYVE 368
+ +IP+L +L+ LA+ ++ +IV + + W G+ARV R L ++E+ YV+
Sbjct: 186 LMTIPSLYLLVALAAVLPPGLSSAERFLLIVAITSLINWAGLARVIRGQVLSLREREYVQ 245
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG----DPTAVTW 424
A+ +GA ++ +HI+PQ L Y L+VP ++ E+ LS +GLG DP +W
Sbjct: 246 ASQVMGASRLYLLIRHILPQTLTYVIIAATLAVPSFIVAESVLSLVGLGIQQPDP---SW 302
Query: 425 GQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
G +L A A+ + W + PP L I + L F ++G L L+PR
Sbjct: 303 GNMLSLATNASMLLLNP-WLIWPPALLIVVAVLAFNVVGDGLRDRLDPR 350
>pir||E75202 dipeptide abc transporter, dipeptide-binding protein PAB0093 -
Pyrococcus abyssi (strain Orsay)
>gi|5457577|emb|CAB49068.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 287
Score = 144 bits (360), Expect = 2e-33
Identities = 78/222 (35%), Positives = 129/222 (57%), Gaps = 6/222 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD+ GRD+++ +V+G+RI+L++GI VA++S GV G+ S Y GG DE++MR +
Sbjct: 67 WFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVD 126
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ + P L + + + + + +I + LV GW ARV R+ L +KE+ ++EAA
Sbjct: 127 IVWAFPALILALAIVAILGPGLINAMIAIALV--GWASYARVVRAETLSVKEELFIEAAR 184
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
A+G RI+F +I+P ++ I ++P A++T + LS+LGLG P + WG +L
Sbjct: 185 AIGESDLRILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLML-- 242
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNP 472
+A + W+ I PGLAI + L F +G L + P
Sbjct: 243 -SSARVYVTRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQP 283
>pir||C75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460716|gb|AAF12421.1|AE001863_46
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 369
Score = 143 bits (358), Expect = 3e-33
Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 9/225 (4%)
Query: 248 RTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMM 307
R + GTD GRDL++ + G ++S+ +G+ ++S G+L G S Y GGW D ++
Sbjct: 139 RYFFLFGTDQLGRDLFSRTLVGAQVSMTVGVVGVLISFALGILLGGVSGYFGGWVDTLIQ 198
Query: 308 RFQEFMASIPTLPILIMLASAFKGH-----VTLGIIVLLLVVFGWVGIARVSRSMALQIK 362
R E + S P LPIL+ LA+ V GI+ +L ++ GW +ARV R L +
Sbjct: 199 RVVEVLLSFPRLPILLALATLIPARWPSTWVYTGIVAVLALI-GWASLARVVRGQVLAAR 257
Query: 363 EQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV 422
YV AA A+GA R+I +HI P L + L++PG +L E+ LS+LGLG +
Sbjct: 258 NLDYVSAAQAMGASNLRVILRHITPNLSSFLLVTATLALPGYILGESTLSFLGLGIKEPM 317
Query: 423 T-WGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTAL 466
T WG +L D A+ + + W++ PGL + + L F +G AL
Sbjct: 318 TSWGLLLRD--ASKLEVVSSYPWLLWPGLFVFISVLAFNFMGDAL 360
>gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC-2) [Sulfolobus
solfataricus]
Length = 536
Score = 143 bits (357), Expect = 4e-33
Identities = 75/238 (31%), Positives = 127/238 (52%), Gaps = 5/238 (2%)
Query: 236 VNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTS 295
V +L F G YG +GTD+ G ++A G L + I + V G ++G+ +
Sbjct: 289 VYLSDLYFEFLGSRYGVLGTDNNGASVFAEYSQGGIFDLELAILAGLAIVFIGAVFGLFA 348
Query: 296 AYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLG----IIVLLLVVFGWVGIA 351
Y GG D+++ F +F+ +P L ILI+L + F+ T+ +I+++LV+ W +
Sbjct: 349 GYYGGKLDQILTSFTDFILLLPGLAILIVLITIFQQIFTVFPKDILIIIVLVILSWPPTS 408
Query: 352 RVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGL 411
R R LQ++ +VEAA ALG II KH++ + P AQ+ +P + E+ L
Sbjct: 409 RTIRGQVLQVRNMAFVEAAKALGMSNMEIIRKHVLRHVFPIIIAQLIFDIPAVIGIESAL 468
Query: 412 SYLGLGDPTAVTWGQILHDAQAANATINGY-WWWVIPPGLAIALVSLTFVLLGTALDR 468
+LG+G TWG +L + A+ G+ WWW++ PG+A+ L+ ++ +G A+ R
Sbjct: 469 DFLGIGILKFPTWGNMLGFSINASLDAPGFAWWWILTPGIALFLLGVSLFYIGEAITR 526
>pir||E72720 probable oligopeptide transport system permease protein oppC
APE0302 - Aeropyrum pernix (strain K1)
>gi|5103941|dbj|BAA79257.1| (AP000059) 308aa long
hypothetical oligopeptide transport system permease
protein oppC [Aeropyrum pernix]
Length = 308
Score = 143 bits (356), Expect = 6e-33
Identities = 83/217 (38%), Positives = 124/217 (56%), Gaps = 5/217 (2%)
Query: 261 DLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPTLP 320
D++ G++WGTRISL I + V ++V GV+ G SAY GG D ++MR E S+P L
Sbjct: 91 DIYYGVIWGTRISLRISLIVVGVAVAIGVVVGSISAYFGGIIDNILMRITEVFLSLPGLI 150
Query: 321 ILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRI 380
+ + +AS + +L ++L L+ W AR+ R+ L++K + YVEAA LG T RI
Sbjct: 151 LAMAIASMMER--SLQNMILALIAVWWPAYARIVRAEVLRVKNEPYVEAAKILGLNTYRI 208
Query: 381 IFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQAANATIN 439
I +HI+P + ++ + VL +GL +LGLG P WG ++ ++ N +
Sbjct: 209 IARHILPNSIYTVLVIASMDLGLVVLVASGLGFLGLGAQPGTAEWGIMI--SEGRNWLLQ 266
Query: 440 GYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
G WW V PG+AI L L + LLG L VL+PR R+
Sbjct: 267 GAWWPVFFPGIAIFLWVLGWSLLGDGLRDVLDPRTRK 303
>pir||A75118 dipeptide abc transporter, permease protein (dppc) PAB1873 -
Pyrococcus abyssi (strain Orsay)
>gi|5458169|emb|CAB49658.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppC) [Pyrococcus abyssi]
Length = 387
Score = 141 bits (353), Expect = 1e-32
Identities = 87/258 (33%), Positives = 128/258 (48%), Gaps = 35/258 (13%)
Query: 250 YGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRF 309
Y +G D GRDL + L+ G R S +I I V + V G++ G+ + Y GG DE++MR
Sbjct: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
Query: 310 QEFMASIPTLPILIMLASAFKGHVT------------------------------LGIIV 339
+ S P L + I ++ + L +IV
Sbjct: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
Query: 340 LLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIAL 399
+++V+ W G AR++R L +E+ YVEAA A+G T I+F+HI+P ++ I L
Sbjct: 235 AMIIVW-WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITL 293
Query: 400 SVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLT 458
G VL EAGLS+LGLG P WG+I++D WW V PGL + L +L
Sbjct: 294 DFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGA---QYFPRCWWLVFYPGLVVLLTALG 350
Query: 459 FVLLGTALDRVLNPRLRR 476
+ LLG L +L+P+ RR
Sbjct: 351 WNLLGDGLRDILDPKTRR 368
>pir||T44599 oligopeptide transport system permease protein [imported] -
Rhizobium meliloti megaplasmid 2 (fragment)
>gi|4929437|gb|AAD33993.1|AF148072_1 (AF148072)
oligopeptide transport system permease protein
[Sinorhizobium meliloti]
Length = 289
Score = 141 bits (352), Expect = 2e-32
Identities = 80/226 (35%), Positives = 132/226 (58%), Gaps = 9/226 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GRD+ + +++G RISL IG+ +S + G++ G + Y GG D ++ R E
Sbjct: 65 LGTDRLGRDVLSRIIYGARISLTIGLLGITVSFVLGIVIGGLAGYHGGIFDLVVQRLIEV 124
Query: 313 MASIPTLPILIMLASAFKGH-----VTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYV 367
+ SIP++P+ + LA+ + LGI V+L ++ W G+AR RS L ++E+ YV
Sbjct: 125 LQSIPSIPLWLSLAAIMPATWSPLLIYLGITVILGLL-DWTGLARAVRSKLLALREEDYV 183
Query: 368 EAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQ 426
AA +GA +GRII +H++P + + A +S+PG +L E LS+LGLG P +WG
Sbjct: 184 LAAQLMGARSGRIIGRHLVPGFMSHLIATATISIPGMILGETALSFLGLGLRPPITSWGI 243
Query: 427 ILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNP 472
+L +A + ++ ++ W++ P + + LV L F LG L +P
Sbjct: 244 LL--TEAKSVSVIAFYPWLLFPTIPVILVILAFNFLGDGLRDAADP 287
>pir||C72617 probable dipeptide transport system permease protein APE1396 -
Aeropyrum pernix (strain K1) >gi|5105079|dbj|BAA80393.1|
(AP000061) 387aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 387
Score = 140 bits (350), Expect = 3e-32
Identities = 90/257 (35%), Positives = 126/257 (49%), Gaps = 37/257 (14%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++G D+ GRDL + +++G R S I+ I V + G+L G+ S Y GG DE++MR +
Sbjct: 127 WLGADEYGRDLLSRILYGARTSFIVVILVMAVGPWIGILLGLFSGYRGGVVDEVIMRVVD 186
Query: 312 FMASIPTLPILIMLASAFKGH-----------------------------VTLGIIVLLL 342
+ P L + I L++ V L ++V+ L
Sbjct: 187 VFLAFPGLILAIALSAVLPSRLDPIIINNELLLGTLLRLFALKPEDALPMVRLVVVVIAL 246
Query: 343 VVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVP 402
+ W AR+ R M L +E TYVEAA ALG T I+ HI+P +L + L
Sbjct: 247 WIVWWPVYARLVRGMVLSARENTYVEAARALGIPTHSILLGHILPNILGPVLVYLTLDFG 306
Query: 403 GAVLTEAGLSYLGLGD-PTAVTWGQILHDAQA--ANATINGYWWWVIPPGLAIALVSLTF 459
+L EAGLS+LGLG P WG+I++D NA WW V PGLAI L F
Sbjct: 307 AVILVEAGLSFLGLGAVPPIADWGRIIYDGAQYYPNA-----WWLVFFPGLAILFTVLGF 361
Query: 460 VLLGTALDRVLNPRLRR 476
LLG AL +++PR RR
Sbjct: 362 NLLGDALRDIMDPRTRR 378
>gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis]
Length = 337
Score = 140 bits (350), Expect = 3e-32
Identities = 78/230 (33%), Positives = 126/230 (53%), Gaps = 6/230 (2%)
Query: 248 RTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMM 307
+ Y + GTDD GRDLW GTR+SL I + A + ++ GV YG SA+ GG D +M
Sbjct: 113 KEYFWFGTDDLGRDLWTRTWEGTRVSLYIALLAAAIDLVIGVAYGGISAFYGGRVDNIMQ 172
Query: 308 RFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYV 367
R E + IP L I+I++ + I L + + GW+G++R+ R L++K Q YV
Sbjct: 173 RIMEIINGIPYLIIVILMVIIMGSGI--WSITLAMAITGWIGMSRIVRGQILKLKNQEYV 230
Query: 368 EAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQ 426
A+ LGA ++I KH++P ++ ++P AV EA LS++GLG P + G
Sbjct: 231 LASRTLGATNTQLIVKHLIPNVMGPIIVMTMFTIPSAVFGEAFLSFIGLGIQPPFASLGS 290
Query: 427 ILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
+++D +I Y + P + I+++ L F L+ L L+P++R+
Sbjct: 291 LVNDGY---KSIQTYPHMMFIPAVVISILILAFNLMADGLRDALDPKMRK 337
>pir||E71014 probable dipeptide transport system permease protein dppC -
Pyrococcus horikoshii >gi|3257834|dbj|BAA30517.1|
(AP000006) 385aa long hypothetical dipeptide transport
system permease protein dppC [Pyrococcus horikoshii]
Length = 385
Score = 139 bits (348), Expect = 5e-32
Identities = 87/255 (34%), Positives = 128/255 (50%), Gaps = 35/255 (13%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+G+D GRDL + ++ G R S +I I V L V G++ G+ + Y GG DE++MR +
Sbjct: 118 LGSDHYGRDLLSLILQGARTSFVISIIVISLGVPLGIILGLIAGYYGGKIDELIMRTTDM 177
Query: 313 MASIPTLPILIMLASAFKGHVT------------------------------LGIIVLLL 342
+ P L + I ++ + L +IV ++
Sbjct: 178 FLAFPALILAIAFSAVLPDRLQAFISSHEIIEKIVLAIFALDQREAGNLGRLLAVIVAMI 237
Query: 343 VVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVP 402
+V+ W G AR++R L +E+ YVEAA A+G T I+FKHI+P ++ I L
Sbjct: 238 IVW-WPGYARITRGSTLTEREKLYVEAARAVGLPTRTILFKHILPNIIGPILVYITLDFG 296
Query: 403 GAVLTEAGLSYLGLGD-PTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVL 461
G VL EAGLS+LGLG P WG+I++D WW V PGL + L +L + L
Sbjct: 297 GVVLMEAGLSFLGLGAVPPIADWGRIVYDGA---QYFPRCWWLVFYPGLIVLLTALGWNL 353
Query: 462 LGTALDRVLNPRLRR 476
LG L +L+PR RR
Sbjct: 354 LGDGLRDILDPRTRR 368
>gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1]
Length = 308
Score = 139 bits (347), Expect = 6e-32
Identities = 83/226 (36%), Positives = 125/226 (54%), Gaps = 7/226 (3%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD G DL AG++ GT+ SL I +VAVL+ L G ++G + Y+GGW D ++MR + +
Sbjct: 86 GTDHLGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAVAGYVGGWADSLLMRIVDLI 145
Query: 314 ASIPTLPILIMLASAFKG--HVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
P L + LA +G H L ++ L+L W +ARV RS+ L ++ + +V AA
Sbjct: 146 MIFPLLAVAAFLARQSQGGEHGWL-LVALVLATLSWTVLARVVRSVVLSLRTREFVIAAK 204
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
GAG RIIF+H++P + + V A+L+E LSYLG G P + G +++
Sbjct: 205 IAGAGPVRIIFRHLLPNTVGPIIVAATVLVASAILSETALSYLGFGVQPPDTSLGLLINQ 264
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
AQ A +T W PGL I L++L +G L L+P+ +R
Sbjct: 265 AQGAISTRP---WLFYFPGLFIILIALCVAFIGDGLRAALDPKQQR 307
>sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|72439|pir||QREBOC oligopeptide transport system
permease protein oppC - Salmonella typhimurium
>gi|47804|emb|CAA29041.1| (X05491) Opp C (AA1-301)
[Salmonella typhimurium]
Length = 302
Score = 139 bits (346), Expect = 8e-32
Identities = 80/225 (35%), Positives = 124/225 (54%), Gaps = 6/225 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
Y GTD GRDL + G RISL++GI+ A+++V+ G LYG S YLGG D +MMR E
Sbjct: 83 YFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLLE 142
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ S P + +I+L + F ++ L + + +V W+ +AR+ R L +K + ++EAA
Sbjct: 143 ILNSFPFMFFVILLVTFFGQNILLIFVAIGMV--SWLDMARIVRGQTLSLKRKEFIEAAQ 200
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQILHD 430
G T I+ +HI+P +L +L VP +L E+ LS+LGLG + +WG +L D
Sbjct: 201 VGGVSTASIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSD 260
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
AN+ W + P G + + F +G L L+P+ R
Sbjct: 261 --GANSMEVSPWLLLFPAGFLVVTL-FCFNFIGDGLRDALDPKDR 302
>pir||T34756 oligopeptide transport integral membrane protein - Streptomyces
coelicolor >gi|3402243|emb|CAA20179.1| (AL031184)
oligopeptide transport integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 335
Score = 138 bits (345), Expect = 1e-31
Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 18/227 (7%)
Query: 259 GRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPT 318
GRD++A +V G RISL++G A+++V+ G + GV + + GGW D ++ R + + + P
Sbjct: 112 GRDIFARIVHGARISLLVGFLSAMVAVVLGTVLGVLAGFFGGWVDSLICRIMDGLLAFPQ 171
Query: 319 LPILIMLASAFKGHVT----LGIIVLLLVV----FGWVGIARVSRSMALQIKEQTYVEAA 370
L +I L S ++ G+ +L+++V FGW I RV R L ++E+ YVEAA
Sbjct: 172 LLFIIALVSVMPDNMLGLSGTGVRLLMMIVVIGFFGWPYIGRVVRGQTLSMREREYVEAA 231
Query: 371 IALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILH 429
+LGAG I+FK ++P L+ + +P +LTEA LS+LG+G P +WGQ+L
Sbjct: 232 RSLGAGRFYILFKELLPNLVAPIIVYTTMMIPTNILTEAALSFLGVGVKPPTSSWGQMLS 291
Query: 430 DAQAANATINGYW---WWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
A I+ Y +++ PG+AI + L F L G + L+P+
Sbjct: 292 SA------IDYYKSDPMYMVVPGVAIFITVLAFNLFGDGVRDALDPK 332
>sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442406|pir||H64871 oligopeptide transport system
permease protein oppC - Escherichia coli
>gi|1742034|dbj|BAA14777.1| (D90763) Oligopeptide
transport system permease protein OppC. [Escherichia
coli] >gi|1787498|gb|AAC74327.1| (AE000223) homolog of
Salmonella oligopeptide transport permease protein
[Escherichia coli K12] >gi|1805526|dbj|BAA16040.1|
(D90852) Oligopeptide transport system permease protein
OppC. [Escherichia coli]
Length = 302
Score = 138 bits (344), Expect = 1e-31
Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
Y GTD GRDL + G RISL++G++ A+++V+ G LYG S YLGG D +MMR E
Sbjct: 83 YFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLE 142
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ S P + +I+L + F ++ L + + +V W+ +AR+ R L +K + ++EAA
Sbjct: 143 ILNSFPFMFFVILLVTFFGQNILLIFVAIGMV--SWLDMARIVRGQTLSLKRKEFIEAAQ 200
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQILHD 430
G T I+ +HI+P +L +L VP +L E+ LS+LGLG + +WG +L D
Sbjct: 201 VGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSD 260
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
AN+ W + P G + + F +G L L+P+ R
Sbjct: 261 --GANSMEVSPWLLLFPAGFLVVTL-FCFNFIGDGLRDALDPKDR 302
>pir||C72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980802|gb|AAD35390.1|AE001712_3 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 138 bits (344), Expect = 1e-31
Identities = 74/223 (33%), Positives = 119/223 (53%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD KG+D++ L + + SLI+ AV S + + G+ S YLGG TD ++M +
Sbjct: 59 LGTDGKGQDIFWLLTFSLKNSLILATIAAVFSRIIAITIGMLSGYLGGTTDRILMALTDT 118
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
+P P+L++L+S K +++L I+ L++ VFGW G ARV RSM L ++E+ +V +
Sbjct: 119 FMVMPVFPLLLLLSSLIKNYLSLPILGLIIGVFGWAGDARVIRSMILSLREREFVVTSKF 178
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
G T ++F +P L+P S+ GA+ E L+ LG T G + H
Sbjct: 179 SGMRTFEVVFGDFVPYLIPVISGGFIGSMMGAIGFEIVLAILGFTRVEIPTLGSMFHWMI 238
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
A + GYWWWV+ P + + L +++ L+PR R
Sbjct: 239 NFQAMLLGYWWWVLTPIVTAVFLFTALYTLSLSINEYLDPRTR 281
>pir||T35940 probable transport permease protein - Streptomyces coelicolor
>gi|4158199|emb|CAA22762.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 312
Score = 138 bits (343), Expect = 2e-31
Identities = 76/223 (34%), Positives = 128/223 (57%), Gaps = 5/223 (2%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTDD GRDL V+G R+SL++G++ A+ + + G G T+ LGGW D +MR + +
Sbjct: 89 GTDDVGRDLLLRCVYGLRVSLLVGMAAALTATVVGTAVGATAGALGGWVDRGVMRVVDAL 148
Query: 314 ASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIAL 373
+S+P L + I + + F+ V +V + + W+ AR+ R+ L ++ + +++AA++
Sbjct: 149 SSVPHLLLGIFIVAMFRPGV--WPVVASVALTHWLSTARIVRAEVLSLRARPHIDAAVSG 206
Query: 374 GAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPT-AVTWGQILHDAQ 432
GA R+ +H++P +LP A L VP A+ E+ LS+LGLG PT + G ++ +A+
Sbjct: 207 GASRWRVTVRHLLPGVLPQAALAAVLMVPHAMWHESALSFLGLGLPTHTASLGNLIQEAR 266
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
+ + G WW + PGL I + +L L A +NPR R
Sbjct: 267 --GSLLAGQWWPTLFPGLFIIVPTLAVAGLAGAWRERINPRRR 307
>gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhodococcus fascians]
Length = 714
Score = 137 bits (341), Expect = 3e-31
Identities = 79/221 (35%), Positives = 123/221 (54%), Gaps = 8/221 (3%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD GRD+ + L+ G +SL + V V +++ + G+ S Y+G W D ++MR E
Sbjct: 365 WFGTDGLGRDVLSRLLAGASVSLRFSVIVVVTALIVALPIGLFSGYIGRWPDTLLMRIME 424
Query: 312 FMASIPTLPILIMLASAF-KGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAA 370
+ S P + + I + + GI V + VV G AR+ R+ AL ++E+ +++A+
Sbjct: 425 GIHSFPAIVLAIAIVGILGPSLLNAGIAVAVAVV---PGFARLIRAQALSVREEVFIDAS 481
Query: 371 IALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILH 429
A+G T RI+ +H+ P +L Q+A+ + A+L EAGLSYLGLG P +WG +L
Sbjct: 482 RAIGTPTRRILLRHLFPNVLSPLIVQVAVVLGFALLAEAGLSYLGLGVQPPQASWGSMLR 541
Query: 430 DAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVL 470
A + T W V+PPG+AI LV L F +G L L
Sbjct: 542 QATDSQLTNP---WGVLPPGIAIVLVVLAFNTIGEGLRTAL 579
>sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|1073368|pir||S47764 dipeptide transport system
permease protein dppC - Escherichia coli
>gi|349227|gb|AAA23704.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466681|gb|AAB18520.1| (U00039)
dppC [Escherichia coli] >gi|1789964|gb|AAC76567.1|
(AE000431) dipeptide transport system permease protein 2
[Escherichia coli K12]
Length = 300
Score = 134 bits (335), Expect = 2e-30
Identities = 82/229 (35%), Positives = 125/229 (53%), Gaps = 14/229 (6%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTDD GRD+ + L++G R+SL++G V VLS++ GV+ G+ + Y GG D ++MR +
Sbjct: 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDI 140
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
M ++P+L + ++L + F ++G L L R++R+ L + YV A+
Sbjct: 141 MLALPSLLLALVLVAIF--GPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRV 198
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD- 430
GAG R +F +I P L Q +L A+L A L +LG+G P WG +L D
Sbjct: 199 AGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDV 258
Query: 431 ---AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
AQ+A WW V PGLAI L L F L+G L L+P+L++
Sbjct: 259 LQFAQSA-------WWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
>gi|11499358 dipeptide ABC transporter, permease protein (dppC) [Archaeoglobus
fulgidus] >gi|7442417|pir||H69470 dipeptide ABC
transporter, permease protein (dppC) homolog -
Archaeoglobus fulgidus >gi|2648779|gb|AAB89481.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppC) [Archaeoglobus fulgidus]
Length = 286
Score = 134 bits (335), Expect = 2e-30
Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 7/226 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
MGTD+ GRD+++ +V+G+R+ L + +S +++S + GV G+ S Y GG D ++ +
Sbjct: 66 MGTDNLGRDVFSRIVFGSRVVLAVVLSASLVSTVIGVPLGLISGYFGGKLDRLLSMLMDS 125
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
M + P L IL + +A G +V + VV+ R+ R L +K +VEAA A
Sbjct: 126 MYAFPGL-ILAIAIAAVLGPSVFNAVVAISVVY-VPTYFRMIRGQTLSVKSLLFVEAAKA 183
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLG--LGDPTAVTWGQILHD 430
GA RI+ K+I P L+P +LSV A+LTEAGLS+LG + PT WG L
Sbjct: 184 AGASDWRIMRKYIFPNLIPTLVVVFSLSVADAILTEAGLSFLGFIVSAPTP-DWGFEL-- 240
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
A GYWW + PGL + L+SL F L+G L + PR R
Sbjct: 241 ASGRPYLPAGYWWMITFPGLMVMLLSLGFALVGEGLSEIYAPRRER 286
>gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [Listeria monocytogenes]
Length = 344
Score = 134 bits (335), Expect = 2e-30
Identities = 72/228 (31%), Positives = 128/228 (55%), Gaps = 6/228 (2%)
Query: 249 TYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMR 308
TY ++G+D GRD +A + GTR+SLII + A+ ++ GV YG+ S Y+GG D M R
Sbjct: 121 TYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALCDLVIGVAYGLISGYVGGRVDNFMQR 180
Query: 309 FQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVE 368
E + +IP L ++I++ + + I++ + + W+ +ARV R L+ K Q +V
Sbjct: 181 VLEVIGAIPNLVVVILMMLILEPGIV--SIIIAIAMTSWITMARVVRGQVLKRKNQEFVM 238
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPT-AVTWGQI 427
A++ LG T +I+ KH++P + I S+P A+ EA LS++GLG P A + G +
Sbjct: 239 ASMTLGESTPKILIKHLIPNISGIIIINIMFSIPSAIFFEAFLSFIGLGLPAPAASLGVL 298
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
++D T+ + ++ P + + ++ + F L+ L +P++R
Sbjct: 299 VNDGY---KTLQVLPYMILYPCIVLCIIMIAFNLIADGLRDAFDPKMR 343
>pir||C82356 peptide ABC transporter, permease protein VC0173 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654576|gb|AAF93349.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 312
Score = 134 bits (335), Expect = 2e-30
Identities = 77/237 (32%), Positives = 130/237 (54%), Gaps = 11/237 (4%)
Query: 247 GRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMM 306
G + +GTD++GRD+++ +++G+R+SL IG L + G++ G+++ Y GG D +
Sbjct: 75 GNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFL 134
Query: 307 MRFQEFMASIPTLPILIMLASAFKG-----HVTLGIIVLLLVVFG---WVGIARVSRSMA 358
MRF + S T+ + I++++ FK + +V+L+V+ G W AR R+
Sbjct: 135 MRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASV 194
Query: 359 LQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGD 418
L K++ YVEAA +G RI+F+HI+P L + V A+++EA LS+LGLG
Sbjct: 195 LAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGL 254
Query: 419 PT-AVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
P + G ++ + +G WW PG+ + L+ L LLG L V NP++
Sbjct: 255 PVDQPSLGSLI--SIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKI 309
>pir||D82242 oligopeptide ABC transporter, permease protein VC1093 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655562|gb|AAF94252.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 300
Score = 134 bits (334), Expect = 2e-30
Identities = 79/225 (35%), Positives = 126/225 (55%), Gaps = 6/225 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD GRDL+ + G RISL++GI A+++VL G LYG S ++GG TD +MMR E
Sbjct: 81 WFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILE 140
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ +IP + ++I+L + F ++ L I + + W+ +AR+ R L ++ + ++EAA
Sbjct: 141 ILYAIPFMFLVIVLVTFFGRNIVL--IFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAH 198
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVT-WGQILHD 430
G II +HI+P +L L +P +LTE+ LS+LGLG +T WG +L
Sbjct: 199 VCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQ- 257
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
+ AN T+ W ++ P + L F +G L L+P+ R
Sbjct: 258 -EGAN-TMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR 300
>gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 326
Score = 132 bits (330), Expect = 6e-30
Identities = 76/228 (33%), Positives = 121/228 (52%), Gaps = 6/228 (2%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSA-YLGGWTDEMMMRFQE 311
+GTDD G D+++ L+ G + +G +V ++ L +L GVT+ Y D ++ +
Sbjct: 77 LGTDDYGHDIFSQLLVGGFPVIGVGFAVGLIGTLIAILIGVTAGLYAETIIDRILSAITQ 136
Query: 312 FMASIPTLPILIMLASAFKGHVT--LGIIVLLLVVF--GWVGIARVSRSMALQIKEQTYV 367
IP + ++I L A+ G + LG I +LL + GW ARV RS+ L ++ + Y+
Sbjct: 137 IFLIIPGI-LIIELIGAYLGALQFKLGYITILLTLSLTGWAWGARVLRSLVLSLRRREYI 195
Query: 368 EAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQI 427
++ +G +IF I+P LP+ + + + + Y GLG T V WG +
Sbjct: 196 LSSDLIGESKLSVIFNQIIPNNLPFIASNFFFTAIYGIAGFTFIYYFGLGSLTQVNWGTM 255
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
L+ + A + G WWW IPPGL I LV+ +F L+ +DRV NPRLR
Sbjct: 256 LYWSLGGEAYLRGLWWWYIPPGLMIGLVAFSFALINIGIDRVANPRLR 303
>gb|AAB38742.1| (U78885) transport system permease homolog [Listeria monocytogenes]
Length = 335
Score = 132 bits (328), Expect = 1e-29
Identities = 70/219 (31%), Positives = 124/219 (55%), Gaps = 6/219 (2%)
Query: 249 TYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMR 308
TY ++G+D GRD +A + GTR+SLII + A+ ++ GV YG+ S Y+GG D M R
Sbjct: 121 TYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALCDLIIGVAYGLISGYVGGRVDNFMQR 180
Query: 309 FQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVE 368
E + +IP L ++I++ + + I++ + + W+ +ARV R L++K Q +V
Sbjct: 181 VLEVIGAIPNLVVVILMMLILEPGIV--SIIIAIAMTSWITMARVVRGQVLKLKNQEFVM 238
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPT-AVTWGQI 427
A++ LG T +I+ KH++P + I S+P A+ EA LS++GLG P A + G +
Sbjct: 239 ASMTLGESTPKILIKHLIPNISGIIIINIMFSIPSAIFFEAFLSFIGLGLPAPAASLGVL 298
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTAL 466
++D T+ + ++ P + + ++ + F L+ L
Sbjct: 299 VNDGY---KTLQVLPYMILYPCIVLCIIMIAFNLIADGL 334
>pir||E75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458682|gb|AAF10533.1|AE001948_2
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 332
Score = 132 bits (328), Expect = 1e-29
Identities = 85/238 (35%), Positives = 130/238 (53%), Gaps = 21/238 (8%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD+ GRD++A ++ GTRISL +G+ +L+++ G L GV + + GGW D +M + +
Sbjct: 95 GTDNLGRDIYARVLHGTRISLKVGVVSTLLALVIGTLLGVMAGFFGGWFDSVMGYLTDVL 154
Query: 314 ASIPTLPILIMLASAFKG-HVTLGI-------------IVLLLVVFGWVGI---ARVSRS 356
+ P++ + I A+ F H L I +V ++ V I R++RS
Sbjct: 155 LAFPSILLAIGFATIFSSDHPPLLIKGLDRLFALNSPQLVTAMLAVSLVQIPVYMRLARS 214
Query: 357 MALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGL 416
+ L I+E+ +V+AA ALGA R++FKH++P L Q ALS+ A + A L +LG+
Sbjct: 215 VVLSIREREFVQAAGALGASQWRMVFKHVLPNSLSPLIVQGALSIATATIEVAALGFLGI 274
Query: 417 G-DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
G P WG ++ D++ W +I PGLAI L L F LLG L VL+PR
Sbjct: 275 GAQPPLPEWGTMISDSRQYYVDAP---WTMIFPGLAIFLTVLGFNLLGDGLRDVLDPR 329
>sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TQ
>gi|1486421|emb|CAA92399.1| (Z68203) OppC homologue
[Rhizobium sp.] >gi|2182647|gb|AAB91870.1| (AE000098)
Y4tQ [Rhizobium sp. NGR234]
Length = 291
Score = 131 bits (327), Expect = 1e-29
Identities = 76/226 (33%), Positives = 132/226 (57%), Gaps = 7/226 (3%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD+ GRD++A ++G RISLI+G+ AV + + G+L GV + Y + D ++MR +
Sbjct: 70 WFGTDNLGRDVFARTIYGARISLIVGLLSAVCAAVCGLLIGVIAGYSRTF-DNIIMRVMD 128
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ SIPT + I L S + GI+++ + + + R+ RS+ L ++ + YVEAA+
Sbjct: 129 GLMSIPTFLLAIALLSLTGPGI--GILIVAIAIPETPAVTRLVRSVVLSVRSRPYVEAAL 186
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQILHD 430
GA R++++HI+P +P Q A A++TEAGLS++G+G P+ + +WG ++ +
Sbjct: 187 CGGARLPRVLWRHILPSTIPPLMVQSATVCASAIMTEAGLSFIGVGVPSEIPSWGNMIAN 246
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
++ A + PGL +A+ L LLG L + +PR +R
Sbjct: 247 SRLFLAIAP---LTIFAPGLCLAVTVLAVNLLGDGLRDMFDPRSKR 289
>pir||A72421 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980561|gb|AAD35167.1|AE001694_3 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 287
Score = 131 bits (325), Expect = 2e-29
Identities = 68/223 (30%), Positives = 122/223 (54%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GT+ G+D++ L + R SL++ + ++S + ++ G+ + Y GG D ++ +
Sbjct: 58 LGTNSMGQDIFWKLTFAVRNSLVMSLIAGLVSRIIAMIVGMIAGYKGGAADRVLTFLSDS 117
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
IP I++++AS KG ++L ++ LLL VFGW ARV RS L ++E+ + A+
Sbjct: 118 FLVIPLFIIIVLVASIVKGRLSLPMLGLLLGVFGWAWDARVIRSQVLSLRERDFTYTALL 177
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQ 432
G+ I+FK +P L+P FA + ++ A+ E L+ LG+ + T G +L +
Sbjct: 178 SGSKALSIVFKEYLPFLIPLIFATLIGNMSWAIGMEITLAILGVSNLDIPTLGTMLQWSI 237
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
A + GYWWWV+ P L + + L+ ++ L+PR+R
Sbjct: 238 NYQALLLGYWWWVLTPVLTSIFLFIALYLISISISEYLDPRMR 280
>pir||E72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981701|gb|AAD36229.1|AE001772_8 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 301
Score = 130 bits (324), Expect = 3e-29
Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 5/222 (2%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD+ GRD+++ +++G+RI+L++ V++ G+ G+ S Y+GG D ++ + +
Sbjct: 79 GTDNLGRDIFSRVIYGSRIALMVAFLAVVIASAIGIPLGLISGYVGGIFDRVLTLVMDAV 138
Query: 314 ASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIAL 373
S P L IL + +A G + I V + VV+ RV R+ +K + YVEAA AL
Sbjct: 139 YSFPGL-ILAIAVAAVLGPGMMNIAVSIAVVYAPTYF-RVVRNQVTSVKNELYVEAARAL 196
Query: 374 GAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQ 432
GA I+ K+++P + P +++++ A++TEAGLS+LGLG P WG L + Q
Sbjct: 197 GAKDWEILVKYVLPNVFPSIVVVLSMNLADAIMTEAGLSFLGLGIAPPTPDWGFDLSNGQ 256
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
++ WW V+ PGLAI L F + L +LNP +
Sbjct: 257 --RFILSRAWWGVLFPGLAIITSVLGFSMFSEGLSEILNPNI 296
>gb|AAG20459.1| (AE005118) oligopeptide transport permease protein; AppC
[Halobacterium sp. NRC-1]
Length = 386
Score = 129 bits (321), Expect = 7e-29
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 9/235 (3%)
Query: 243 IIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLG--- 299
++ TG +GT KG+ + +V+G R+S+ +G+ + SV+ G G +A+
Sbjct: 148 VVKTGTWQYPLGTSAKGQGILTLVVYGMRVSMEVGLIATIFSVIIGSAVGAVAAFATSVG 207
Query: 300 -GWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMA 358
G DE++MR+ + + P +L++L F L +I+LL F W GIAR R A
Sbjct: 208 RGRIDELLMRYVDVQSVFPDFMLLLLLTYLFGSE--LWMIILLFGFFSWEGIARTVRGEA 265
Query: 359 LQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGD 418
LQ + Y+ AA A GA I+ +H++P + +PG +L EA L++LG D
Sbjct: 266 LQRASEEYITAAEASGANMLYIVRQHLIPNSANSIIISATVGIPGFILGEASLAFLGFSD 325
Query: 419 PTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
PT +WG+ + Q A+ WW PG+ + L L+F +G +L ++PR
Sbjct: 326 PTTYSWGRTIATGQVNLASA---WWIATIPGVFLFLTVLSFYYVGESLRDAMDPR 377
>pir||B72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981748|gb|AAD36272.1|AE001776_8 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 291
Score = 129 bits (320), Expect = 9e-29
Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 8/227 (3%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GT+ G+D++ L + R SL+I + A S + ++ G+ S Y GG D+++M +
Sbjct: 60 GTNWLGQDVFWRLTFAVRNSLLIAVITAFFSRIIAIIVGIVSGYKGGALDQVLMTIGDTT 119
Query: 314 ASIPTLPILIMLASAFK----GHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEA 369
+P L +LI+++ K V LG LLL F W ARV RS L ++E+ +V
Sbjct: 120 MVLPILIVLIVISMILKDWARSFVNLG---LLLAFFSWAWDARVIRSQVLSVRERDFVRV 176
Query: 370 AIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQIL 428
A+ G T +I+ K ++P +LP F ++ A+ E L+YLGLG DPT T G +L
Sbjct: 177 AVLSGMSTMKIVGKQLLPHVLPVIFTTFINNMSWAIGMEITLAYLGLGIDPTVPTLGTML 236
Query: 429 HDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
A A G WWW+ P + L+ + L ++ L+PR R
Sbjct: 237 QRAITRQALFLGLWWWLAAPIVTAILLFIALYWLSVSISEYLDPRAR 283
>dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 302
Score = 129 bits (320), Expect = 9e-29
Identities = 75/225 (33%), Positives = 122/225 (53%), Gaps = 1/225 (0%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++GTD GRD++ L+ GTR S+ IG+ V ++S G+L G+ S Y GG D + MR +
Sbjct: 78 WLGTDYGGRDVFGQLIIGTRNSITIGLLVTLMSGTIGILIGLISGYYGGTIDNIFMRAVD 137
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
F +P L I+I+ A ++ L++ +F W+GIAR+ RS AL+ +E YV+A+
Sbjct: 138 FFMILPNLMIIIVFV-ALVPKYSIVSFSLIMTLFLWMGIARMIRSKALRERELDYVQASK 196
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDA 431
LG+ +I+F ++P L + L++ + E+GLS+LG G P + L
Sbjct: 197 TLGSSDLKIMFTQVLPNLSSLIIVTMTLNLAANIGIESGLSFLGFGFPESTPSLGTLISY 256
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
T+ WW +P + I ++ L+ +G AL R + R RR
Sbjct: 257 ATNPQTLEHRWWIWLPAAILIFVLMLSINNVGQALKRATDARQRR 301
>gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 292
Score = 128 bits (319), Expect = 1e-28
Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 8/228 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GT+ G+D++ L + R SL+I + A+ S V G+ S Y GG D ++M +
Sbjct: 59 LGTNWLGQDVFWRLTFAVRNSLMIAVVTALFSRAIAVFVGILSGYKGGAVDRVLMTVGDT 118
Query: 313 MASIPTLPILIMLASAF----KGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVE 368
+P L +LI+++ K LG LLL F W ARV RS L ++E+ +
Sbjct: 119 TMVLPFLIVLIVISMILRDWTKSFFNLG---LLLAFFSWAWDARVIRSQVLSLRERDFTF 175
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQI 427
AI G T RI++K ++P +LP F ++ A+ E L+YLGLG DPT T G +
Sbjct: 176 VAILSGMSTLRIVYKQLLPHVLPIIFTTFINNMAWAIGMEITLAYLGLGIDPTVPTIGTM 235
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
L A A G WWW++ P +A L+ + L T++ L+PR R
Sbjct: 236 LQRAIYRQALFLGLWWWLVAPIVAAILLFVALYWLSTSVSEYLDPRAR 283
>gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; DppC1 [Halobacterium
sp. NRC-1]
Length = 315
Score = 127 bits (317), Expect = 2e-28
Identities = 77/230 (33%), Positives = 118/230 (50%), Gaps = 4/230 (1%)
Query: 247 GRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMM 306
G T GTD GRD++ ++G I++ G S GV G+ +AY TD ++
Sbjct: 85 GATQQLFGTDAAGRDIFKRTLYGAWIAIKYGTVTVAASTFLGVALGIIAAYYSDLTDNVI 144
Query: 307 MRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTY 366
MR + + + P+L + + L + F + +I L LV ARV R AL++ E Y
Sbjct: 145 MRTMDVLLAFPSLLLALALVAIFGAGLWKVVIALTLVYTP--RFARVVRGAALKVLEDEY 202
Query: 367 VEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGD-PTAVTWG 425
+EA ALGA R++ +H+ P L Q L+ A++ A LS+LG G P +WG
Sbjct: 203 IEATEALGATDARVLARHVFPNTLAPVTVQSTLNYGLAIIDFAALSFLGFGAAPGMPSWG 262
Query: 426 QILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
+L + N + G WW + PGL +A++ L F LLG + L+PR+R
Sbjct: 263 LMLSNG-VTNGLLTGKWWMSLFPGLFLAILVLGFNLLGDGMRDALDPRMR 311
>pir||D82442 probable peptide ABC transporter, permease protein VCA0589
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658000|gb|AAF96491.1| (AE004389) peptide ABC
transporter, permease protein, putative [Vibrio
cholerae]
Length = 352
Score = 127 bits (316), Expect = 3e-28
Identities = 81/247 (32%), Positives = 132/247 (52%), Gaps = 12/247 (4%)
Query: 234 DQVNFDNLKIIFTGR-TYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYG 292
D +NFD + + + ++GTDDKGRD+ A +++G RIS++ G + V+S L GVL G
Sbjct: 111 DTINFDITGSVPSAPDSVNWLGTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIG 170
Query: 293 VTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHV--TLGIIVLLLVVFGWVGI 350
T Y GGW D RF E + +PTL +LI+L+S + + LGI+VL F W+ +
Sbjct: 171 ATQGYYGGWLDLFGQRFIEVWSGMPTLFLLIILSSFVEPNFWWLLGIMVL----FSWMSL 226
Query: 351 ARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAG 410
V R+ L+ + YV AA A+G RII +H++P + + + + G+V T
Sbjct: 227 VGVVRAEFLRCRNFDYVRAAQAMGVSDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTS 286
Query: 411 LSYLGLGDPT-AVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRV 469
L +LG G P + + G++L +A W I + ++++ V +G A+
Sbjct: 287 LDFLGFGLPAGSPSLGELLAQGKANLQAP----WLGISAFVVLSVMLTLLVFIGEAVRDA 342
Query: 470 LNPRLRR 476
+P L+R
Sbjct: 343 FDPHLQR 349
>dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 301
Score = 127 bits (315), Expect = 4e-28
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 14/227 (6%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD GRD++ ++ G I+L +G VL + GV+ GV S Y G D ++MR +
Sbjct: 81 WFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILGVVSGYYGRLVDTVIMRIMD 140
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ + P + + + + S G ++ +++ + +F AR+ R L +++ Y++A
Sbjct: 141 VLLAFPGILLALAIISILGG--SINNVIIAVGIFSIPVFARIVRGSTLAVRKLEYIDAVK 198
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
ALGA RIIFKHI+P +L Q LS+ ++LT + LS+LGLG P WG +L D
Sbjct: 199 ALGASDARIIFKHILPNVLSPIIVQGTLSIATSILTASALSFLGLGAQPPIPEWGAMLSD 258
Query: 431 AQAANATINGYWW----WVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
+ Y + + PGLAI +V L F + G L L+P+
Sbjct: 259 GR-------NYMYDAPHVALFPGLAIVVVVLAFNIFGDGLRDALDPK 298
>sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1282C
>gi|7442464|pir||D70729 probable peptide transport
system permease - Mycobacterium tuberculosis (strain
H37RV) >gi|3261616|emb|CAB01002.1| (Z77164) oppC
[Mycobacterium tuberculosis]
Length = 291
Score = 126 bits (314), Expect = 5e-28
Identities = 76/257 (29%), Positives = 129/257 (49%), Gaps = 7/257 (2%)
Query: 225 VELYTFNPEDQVNFDNLK---IIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVA 281
V Y P ++D+L ++ T ++GT+ G+DL A + G + S++IG+ VA
Sbjct: 33 VSAYALPPLLPYSYDDLDFNALLQPPGTKHWLGTNALGQDLLAQTLRGMQKSMLIGVCVA 92
Query: 282 VLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLL 341
V+S G S Y GGW D +M + + +P+ ++ ++ K + +VLL
Sbjct: 93 VISTGIAATVGAISGYFGGWRDRTLMWVVDLLLVVPSFILIAIVTPRTKNSANIMFLVLL 152
Query: 342 LVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSV 401
L FGW+ +R+ R M + ++E+ ++ AA +G + RII H++P + AL+V
Sbjct: 153 LAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRRIIVGHVVPNVASILIIDAALNV 212
Query: 402 PGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFV 460
A+L E GLS+LG G P V+ G ++ D A+ + W + P + L+ +
Sbjct: 213 AAAILAETGLSFLGFGIQPPDVSLGTLIAD---GTASATAFPWVFLFPASILVLILVCAN 269
Query: 461 LLGTALDRVLNPRLRRL 477
L G L L+P R L
Sbjct: 270 LTGDGLRDALDPASRSL 286
>sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|11277274|pir||T44637 dipeptide transport protein
dppC [imported] - Bacillus firmus
>gi|1813497|gb|AAB41690.1| (U64514) dipeptide
transporter protein dppC [Bacillus firmus]
Length = 304
Score = 125 bits (312), Expect = 8e-28
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 12/228 (5%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTDD GRD++ +V+G R+SL +G +++FG G+ + Y G W D ++ R +
Sbjct: 84 WFGTDDFGRDIFTRIVYGARLSLQVGFFAVTGALIFGTTLGLIAGYYGRWIDMLISRIFD 143
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLV---VFGWVGIARVSRSMALQIKEQTYVE 368
M + P++ + I + + + +I + +V +FG R+ RS + ++E+ ++
Sbjct: 144 IMLAFPSILLAIAIVAILGPSLQNALIAIAIVNVPIFG-----RLVRSKVISLREEEFIM 198
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQI 427
AA A G GRIIF HI+P L Q L A+L A L +LGLG + WG++
Sbjct: 199 AAKAQGMKNGRIIFHHILPNSLAPIIVQATLGFGTAILEAAALGFLGLGAQAPMPEWGKM 258
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
L D++ I W V+ PG +I LV L F ++G L L+P+++
Sbjct: 259 LSDSR---QFIQSAPWTVLFPGFSIMLVVLGFNMIGDGLRDALDPKMK 303
>pir||G72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982326|gb|AAD36813.1|AE001813_5 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 124 bits (308), Expect = 2e-27
Identities = 72/222 (32%), Positives = 118/222 (52%), Gaps = 8/222 (3%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD GRDL++ +++ R + IIG + ++ G + G + + GGW D+ +M + M
Sbjct: 70 GTDALGRDLFSRILYSLRNACIIGFGSQFVVLIIGGILGAVAGFKGGWIDKFIMSIVDIM 129
Query: 314 ASIPTLPILIMLASAF-KGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
+ PT ++L +A +G T I L + + GW G+AR+ R L +K +VEAA A
Sbjct: 130 FAFPTFLFNVILVTALGRGLFT---IFLAIGLTGWAGMARLVRGQVLYLKNSEFVEAAKA 186
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
GA T II KHI+P ++ +A VPGA++TE+GL+ +G+G P +WG ++ +
Sbjct: 187 AGASTFYIIRKHILPNMIGPILVNLAFGVPGAMMTESGLAVIGMGVRPPMPSWGNLIGE- 245
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
+ + +I P + A ++F L L NPR
Sbjct: 246 --GIGMMMAFPHLLIFPAVTFAFTLISFTFLADGLRDAFNPR 285
>dbj|BAB04288.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 277
Score = 123 bits (307), Expect = 3e-27
Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 8/237 (3%)
Query: 232 PEDQVNFDNLKIIFTGRTYGY-MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVL 290
P D + NL + ++ Y +GTD GR + L++G R+SL + + S+ G+L
Sbjct: 37 PHDPIQV-NLALKLLPPSWEYPLGTDQLGRCNLSRLLFGARVSLGFATLIFISSLGIGLL 95
Query: 291 YGVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGI 350
G + Y GGW D ++MRF E + + P L +++ L F L +VL LV+ WV
Sbjct: 96 VGAIAGYRGGWIDSVLMRFCEGVMAFPNLVLVLGLVGLFGPG--LWQVVLALVMVQWVYY 153
Query: 351 ARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAG 410
AR+ RSM + +KEQ ++ AA G+ +II +HI+P +LP L + A++ +
Sbjct: 154 ARMFRSMIVSLKEQNFITAARISGSSPWKIIRRHIIPNVLPPIVVIGTLEMGWAIMDISA 213
Query: 411 LSYLGLG-DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTAL 466
LS+LGLG P WG ++H+ + + I + ++ PG+ I LV +TF +LG +L
Sbjct: 214 LSFLGLGIQPPTPEWGAMIHEGK---SFIRSHPELMLYPGIMILLVVMTFNVLGESL 267
>pir||D64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313398|gb|AAD07369.1| (AE000548)
dipeptide ABC transporter, permease protein (dppC)
[Helicobacter pylori 26695]
Length = 285
Score = 123 bits (305), Expect = 5e-27
Identities = 81/249 (32%), Positives = 133/249 (52%), Gaps = 12/249 (4%)
Query: 228 YTFNPEDQVNFDNLKIIFT--GRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSV 285
Y N +D++ LK I+ G +GTDD GRD+ + L++G RISL IGI ++V
Sbjct: 43 YVQNAQDRL----LKPIWEHGGNAKYLLGTDDLGRDILSRLIYGARISLTIGIVSMGIAV 98
Query: 286 LFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVF 345
FG + G+ + Y GG TD ++MR + M ++P++ +++++ + +T ++ + V
Sbjct: 99 FFGTILGLIAGYFGGKTDAIIMRIMDIMFALPSILLIVIVVAVLGPSLTNAMLAIGFV-- 156
Query: 346 GWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAV 405
G G AR+ RS L KE+ YV A+ G+ R++ K I P + Q + V
Sbjct: 157 GIPGFARLVRSSVLGEKEKEYVIASKINGSSHLRLMCKVIFPNCIIPLIVQTTMGFASTV 216
Query: 406 LTEAGLSYLGLG-DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGT 464
L A LS+LGLG P WG +L ++ AT W ++ PG+ I L ++F L+G
Sbjct: 217 LEAAALSFLGLGAQPPKPEWGAMLMNSMQYIATAP---WMLVFPGVMIFLTVMSFNLVGD 273
Query: 465 ALDRVLNPR 473
+ L+P+
Sbjct: 274 GIMDALDPK 282
>pir||G75529 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458041|gb|AAF09944.1|AE001896_9
(AE001896) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 339
Score = 123 bits (305), Expect = 5e-27
Identities = 76/232 (32%), Positives = 123/232 (52%), Gaps = 8/232 (3%)
Query: 249 TYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMR 308
T+ GT + G +++ GL+WGTR +L + + +++ G+L G S + GGW D ++
Sbjct: 111 TFAPFGTVN-GYNIFYGLIWGTRTALKMSFIIVGITLSIGILIGAISGFYGGWVDGLIQG 169
Query: 309 FQEFMASIP----TLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQ 364
+ ++P T+ IL +L + G G I+ + + GW ARV R L+ ++
Sbjct: 170 IINVIYALPPLVLTVTILTILRAKNPGGDPTGPIIFAMCITGWATYARVIRGDILKTRQL 229
Query: 365 TYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVT- 423
YV+AA ALGA R+I +H++P L F L++ L+ A LS+LGLG + +
Sbjct: 230 EYVDAARALGARDMRMILRHVVPNSLTTVFTLAVLALATVPLSVAALSFLGLGFESGYSE 289
Query: 424 WGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
WGQ++ A+A YW+ + P + I L SL F L G L L+P+ R
Sbjct: 290 WGQLIDFARAWLKP--DYWYVLAFPAIFIVLFSLAFNLFGDGLRDALDPKTR 339
>gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T45538 moaC
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665714|gb|AAB88474.1| (AF242881) moaC
[Agrobacterium tumefaciens]
Length = 293
Score = 122 bits (304), Expect = 7e-27
Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 6/226 (2%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+G D GRD+ L++G R SL+IG V++++ G L G+ + + GG D ++M+ +
Sbjct: 72 LGADQYGRDILTRLLYGARYSLLIGSLAVVIAMVIGTLIGMMAGFRGGKIDIVLMQIMDV 131
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
+ + P+L + I L + T+ I+ + ARV+R+ L +++ YV+A A
Sbjct: 132 ILAFPSLILGIALVALMGA--TMTNIIAAIAFTSVPAFARVARAAVLTQRDREYVQACSA 189
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
+G R +F+HI+P +LP +L + AV TEA L+++GLG P A TWG ++ D
Sbjct: 190 MGFSGSRTLFRHILPAILPEVMVLASLWMANAVRTEASLAFVGLGIAPPAPTWGGMVRD- 248
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRRL 477
I + I P LAI L+ L F L+G L +++PR++ L
Sbjct: 249 --GFTVILSSPYLAIFPSLAILLLVLAFNLIGDGLRDLIDPRMKDL 292
>gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola]
Length = 338
Score = 122 bits (303), Expect = 9e-27
Identities = 69/224 (30%), Positives = 117/224 (51%), Gaps = 4/224 (1%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD GRD + ++ G ISL +G ++V G+ G + + GG D ++MR E +
Sbjct: 80 GTDKYGRDTFMRVLEGGWISLQVGFLSTFMAVTIGLTMGSVAGFFGGRVDNIIMRLIEIL 139
Query: 314 ASIPTLPILIMLASAFKGH---VTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAA 370
+S P L I L++ F+ L +IV++L + W G+AR+ R L ++EQ ++ A
Sbjct: 140 SSFPFLAIAYTLSAIFRERPPEFRLYVIVIILGLLSWTGLARLIRGQILALREQEFIVAT 199
Query: 371 IALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQILH 429
ALG IF+H++P +L L+ ++L+EA LS+L L + TWG +L
Sbjct: 200 RALGIKRRNQIFRHLVPNVLATVVVSATLTFASSILSEAFLSFLNLSVTEPIPTWGALLS 259
Query: 430 DAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
A + ++ +WW I PG + ++ L+G L ++P+
Sbjct: 260 KASENSTSLRTFWWIWIFPGAMLFFFIMSINLIGEGLRDSIDPK 303
>emb|CAC12448.1| (AL445067) oligopeptide transport system, permease protein appC
related protein [Thermoplasma acidophilum]
Length = 318
Score = 122 bits (303), Expect = 9e-27
Identities = 64/226 (28%), Positives = 119/226 (52%), Gaps = 3/226 (1%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GT G+D+++ L+ G +L+I SV + L V G+ + + + +
Sbjct: 81 LGTTGYGQDVFSQLIAGAAPTLMIAFSVGIAGTLISVFVGLLAGFSSPAVNGAINAIISI 140
Query: 313 MASIPTLPILIMLASAFKG-HVTLGII--VLLLVVFGWVGIARVSRSMALQIKEQTYVEA 369
+P + ++++ + F G H +LG + +++LV+ GW AR RS+ L I ++ Y+ +
Sbjct: 141 FLVVPGVLLIMLFGTYFLGIHQSLGYLPTIIILVITGWAFGARTFRSITLSIAKRDYILS 200
Query: 370 AIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILH 429
++ +G IIF+ IM ++P + + + + YLG+G+ V WG +L+
Sbjct: 201 SLLIGESRLSIIFRQIMRAIMPVVVSNFFFTSMYGAMGLTFVEYLGVGNIEQVNWGTMLY 260
Query: 430 DAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
A A + G WWW++PP + I+L+ +F+LL LD + NP LR
Sbjct: 261 WAINNEAYLTGQWWWILPPSIMISLLMFSFILLNFGLDEMANPSLR 306
>pir||D70141 oligopeptide ABC transporter, permease protein (oppC-1) homolog -
Lyme disease spirochete >gi|2688244|gb|AAC66723.1|
(AE001140) oligopeptide ABC transporter, permease
protein (oppC-1) [Borrelia burgdorferi]
Length = 349
Score = 122 bits (302), Expect = 1e-26
Identities = 75/242 (30%), Positives = 128/242 (51%), Gaps = 6/242 (2%)
Query: 233 EDQVNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYG 292
E++V + K + + +GTD+ GRDL A L+ G++ISL +G A LS++ G + G
Sbjct: 110 ENEVQIIDKKEVKIHKRVYLLGTDNLGRDLLARLIQGSQISLSVGFIGAFLSMIIGTILG 169
Query: 293 VTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIAR 352
+ + GG D+++ + E + ++P L I+I+L + + + +G+ + L V W+ +AR
Sbjct: 170 SIAGFFGGLPDKIITKTIEILYALPYLLIVIILMAIMERSI-IGLFIALAFV-SWLTVAR 227
Query: 353 VSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLS 412
V R + +++AA LGA RII KH++P + + VP ++ EA LS
Sbjct: 228 VVRGQVQSLSSSEFIQAAKTLGATNQRIILKHLIPNSIGMIVIFTTIRVPSFIMAEAFLS 287
Query: 413 YLGLGDPTAVT-WGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLN 471
+LGLG +T WG+++ Q AT Y W V P + + + L LG L +
Sbjct: 288 FLGLGISAPMTSWGELV---QNGIATFVEYPWKVFIPAIVMTIFLLFMNFLGDGLRDAFD 344
Query: 472 PR 473
P+
Sbjct: 345 PK 346
>gi|10954944 Probable accE [Agrobacterium tumefaciens]
>gi|6498297|dbj|BAA87749.1| (AB016260) Probable accE
[Agrobacterium tumefaciens]
Length = 286
Score = 122 bits (302), Expect = 1e-26
Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GRD+ + ++ T+ SL+I + +++ G G +A+ GGW D ++M F +
Sbjct: 68 LGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMGFADA 127
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
AS+P + I + AF G L I+++L+ V + AR++R + L ++ Y EAA
Sbjct: 128 KASVPFI-IFALGVLAFLGSSPL-ILLMLVGVASFERYARLTRGLVLSANQEGYAEAARI 185
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
+G + RI +H++P + QI L+ P +L E+GLS+LGLG P + G ++ D
Sbjct: 186 VGVPSLRIYVRHVLPNIAGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVADG 245
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
+ A WW + PG+ I L +L+ LLG L + RLR
Sbjct: 246 RNYIAIA---WWLIALPGVVIVLTTLSISLLGDYLRDRFDARLR 286
>sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDQ
>gi|7442414|pir||H64901 probable oligopeptide transport
protein b1485 - Escherichia coli
>gi|1742425|dbj|BAA15140.1| (D90789) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1742436|dbj|BAA15150.1| (D90790) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1787760|gb|AAC74558.1| (AE000245) putative transport
protein [Escherichia coli K12]
Length = 298
Score = 120 bits (299), Expect = 3e-26
Identities = 71/223 (31%), Positives = 123/223 (54%), Gaps = 6/223 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD+ GRDL++ ++ G++ S++ G+ V ++ + G L G S LGG D ++MR +
Sbjct: 75 WFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMD 134
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
M SIP+L + + LA+A + ++ + +V + R++R AL +++ TYV+AA
Sbjct: 135 IMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPF--YVRLARGQALVVRQYTYVQAAK 192
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
GA +I HI+ LP Q +L + A+L A L ++GLG + WG ++
Sbjct: 193 TFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMV-- 250
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
A N ++ WW+ PG AI L ++ F L G + +L+P+
Sbjct: 251 ANGRNYVLD-QWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPK 292
>pir||A70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960088|emb|CAA17986.1|
(AL022121) dppC [Mycobacterium tuberculosis]
Length = 266
Score = 120 bits (299), Expect = 3e-26
Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 5/225 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD +G D+++ V+G R S+ +G+ + + G G + + G W D ++ R +
Sbjct: 42 WFGTDLQGHDIYSRTVYGARASVTVGLGATLAVFVVGGALGALAGFYGSWIDAVVSRVTD 101
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+P L I+L H T+ ++ +L +FGW +AR++R L+++ YV AA
Sbjct: 102 VFLGLPLLLAAIVLMQVMH-HRTVWTVIAILALFGWPQVARIARGAVLEVRASDYVLAAK 160
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTA-VTWGQILHD 430
ALG +I+ +H +P + A +++ ++TEA LSYLG+G PT+ V+WG ++
Sbjct: 161 ALGLNRFQILLRHALPNAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDINV 220
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
AQ + + ++ P A+A+ L F+++G AL L+P R
Sbjct: 221 AQTRLRSGSPILFY---PAGALAITVLAFMMMGDALRDALDPASR 262
>gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borrelia burgdorferi]
Length = 349
Score = 120 bits (298), Expect = 4e-26
Identities = 74/242 (30%), Positives = 127/242 (51%), Gaps = 6/242 (2%)
Query: 233 EDQVNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYG 292
E++V + K + + +GTD+ GRDL L+ G++ISL +G A LS++ G + G
Sbjct: 110 ENEVQIIDKKEVKIHKRVYLLGTDNLGRDLLVRLIQGSQISLSVGFIGAFLSMIIGTILG 169
Query: 293 VTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIAR 352
+ + GG D+++ + E + ++P L I+I+L + + + +G+ + L V W+ +AR
Sbjct: 170 SIAGFFGGLPDKIITKTIEILYALPYLLIVIILMAIMERSI-IGLFIALAFV-SWLTVAR 227
Query: 353 VSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLS 412
V R + +++AA LGA RII KH++P + + VP ++ EA LS
Sbjct: 228 VVRGQVQSLSSSEFIQAAKTLGATNQRIILKHLIPNSIGMIVIFTTIRVPSFIMAEAFLS 287
Query: 413 YLGLGDPTAVT-WGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLN 471
+LGLG +T WG+++ Q AT Y W V P + + + L LG L +
Sbjct: 288 FLGLGISAPMTSWGELV---QNGIATFVEYPWKVFIPAIVMTIFLLFMNFLGDGLRDAFD 344
Query: 472 PR 473
P+
Sbjct: 345 PK 346
>pir||C64551 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2313343|gb|AAD07318.1|
(AE000544) oligopeptide ABC transporter, permease
protein (oppC) [Helicobacter pylori 26695]
Length = 338
Score = 120 bits (298), Expect = 4e-26
Identities = 72/223 (32%), Positives = 121/223 (53%), Gaps = 7/223 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTDD+ RD+ A LV+G R+SLI GI + + SVL GV G Y GG D + R E
Sbjct: 120 LGTDDQARDVLARLVYGYRVSLIFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLSEI 179
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
++IP L +LI+++SAF + II+ L+++F W+G+++V R+ L+ + Y +AA A
Sbjct: 180 WSAIPMLFLLIVISSAFNSN--FWIILFLVLLFSWMGLSQVVRTEFLKARNMDYTKAARA 237
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPT-AVTWGQILHDA 431
LG +IIF H++P L + + ++ T L +LG G P + + G++++
Sbjct: 238 LGVNDLKIIFYHVLPNALVATITYVPFLMAASISTLVSLDFLGFGMPIGSASLGELVNQG 297
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
+ T + I +AI+L+ V +G + N +
Sbjct: 298 KDNLTTPH----LAIVAFVAISLLLSVLVFIGEGVRDAFNANM 336
>pir||F71957 ABC transporter, permease - Helicobacter pylori (strain J99)
>gi|4154752|gb|AAD05812.1| (AE001461) ABC transporter,
permease [Helicobacter pylori J99]
Length = 338
Score = 120 bits (297), Expect = 5e-26
Identities = 71/223 (31%), Positives = 121/223 (53%), Gaps = 7/223 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTDD+ RD+ A LV+G R+SL+ GI + + SVL GV G Y GG D + R E
Sbjct: 120 LGTDDQARDVLARLVYGYRVSLVFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLSEI 179
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
++IP L +LI+++SAF + II+ L+++F W+G+++V R+ L+ + Y +AA A
Sbjct: 180 WSAIPMLFLLIVISSAFNSN--FWIILFLVLLFSWMGLSQVVRTEFLKARNMDYTKAARA 237
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPT-AVTWGQILHDA 431
LG +IIF H++P L I + ++ T L +LG G P + + G++++
Sbjct: 238 LGVNDLKIIFYHVLPNALVATITYIPFLMAASISTLVSLDFLGFGMPIGSASLGELVNQG 297
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
+ T + + +AI+L+ V +G + N +
Sbjct: 298 KDNLTTPH----LAVVAFVAISLLLSVLVFIGEGVRDAFNANM 336
>sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|972896|gb|AAA95973.1| (U17295) DppC [Haemophilus
influenzae] >gi|1574113|gb|AAC22839.1| (U32798)
dipeptide ABC transporter, permease protein (dppC)
[Haemophilus influenzae Rd]
Length = 295
Score = 119 bits (296), Expect = 6e-26
Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 6/225 (2%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTDD GRD+ + +++GTRIS+ G + +LS FG G+ S Y GG D +++R +
Sbjct: 76 LGTDDIGRDILSRIIYGTRISVFAGFIIVLLSCAFGTSLGLISGYYGGVLDTIIIRLIDI 135
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
M +IP L + I++ S + +L L + V R++R+ + K + YV ++
Sbjct: 136 MLAIPNLLLTIVVVSILE--PSLANATLAIAVVSIPSYVRLTRAAMMNEKNRDYVTSSKV 193
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
GAG R++F I+P L Q+ + + A+L A L +LG+G P G +L +A
Sbjct: 194 AGAGILRLMFIVILPNCLAPLIVQMTMGISNAILELATLGFLGIGAKPPTPELGTMLSEA 253
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
+ N W V PGL I + L F L+G L L+P+L++
Sbjct: 254 RGFMQAAN---WLVTIPGLVILSLVLAFNLMGDGLRDALDPKLKQ 295
>pir||T03434 probable transport protein accE - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153181|gb|AAC17201.1| (AF010180) AccE
[Agrobacterium tumefaciens]
Length = 286
Score = 119 bits (296), Expect = 6e-26
Identities = 73/224 (32%), Positives = 121/224 (53%), Gaps = 6/224 (2%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GRD+ + ++ T+ SL+I + +++ G G +A+ GGW D ++M F +
Sbjct: 68 LGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHFGGWVDNLIMGFADA 127
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
AS+P + I + AF G L I+++ + V + AR++R + L ++ Y EAA
Sbjct: 128 KASVPFI-IFALGVLAFLGSSPL-ILLMRVGVASFERYARLTRGLVLSANQEGYAEAARI 185
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
+G + RI +H++P + QI L+ P +L E+GLS+LGLG P + G ++ D
Sbjct: 186 VGVPSLRIYVRHVLPNIAGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVADG 245
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
+ A WW + PG+ I L +L+ LLG L + RLR
Sbjct: 246 RNYIAIA---WWLIALPGVVIVLTTLSISLLGDYLRDRFDARLR 286
>pir||D83082 probable permease of ABC transporter PA4504 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950744|gb|AAG07892.1|AE004864_4 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 303
Score = 119 bits (296), Expect = 6e-26
Identities = 76/232 (32%), Positives = 122/232 (51%), Gaps = 10/232 (4%)
Query: 247 GRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMM 306
G+ +GTD+ GRDL + L+ G R+SL+IG+S V+S++ G+L G+ + + ++
Sbjct: 76 GQARFLLGTDELGRDLLSRLIHGARLSLLIGLSSVVISLVPGILLGLLAGFSPNRAGPLI 135
Query: 307 MRFQEFMASIPTLPILIMLASAFKGHVTLGII--VLLLVVFGWVGIARVSRSMALQIKEQ 364
MR + M ++P+L +LA A + G+I V+ + + R++R+ + +
Sbjct: 136 MRLMDIMLALPSL----LLAVAIVAILGPGLINTVIAIAIVSLPAYVRLTRAAVMTELNR 191
Query: 365 TYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVT 423
YV A+ GAGT R++F ++P + Q LS A+L A L +LGLG P
Sbjct: 192 DYVTASRLAGAGTLRLMFVCVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPE 251
Query: 424 WGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
WG +L +A I WW V PGL I L L L+G L L+P+L+
Sbjct: 252 WGTML---ASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPKLK 300
>pir||B71193 hypothetical protein PH1818 - Pyrococcus horikoshii
>gi|3258254|dbj|BAA30937.1| (AP000007) 398aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 398
Score = 118 bits (294), Expect = 1e-25
Identities = 105/459 (22%), Positives = 202/459 (43%), Gaps = 80/459 (17%)
Query: 19 RQKGGLLGLFLLTLLVVVALAAPILTSPDIPQKWKLP--WEDTPKAVPPVWYNWFAGESL 76
++K GL+ L L + +A + + S DI + W W + PK+ P+W+ + ++
Sbjct: 4 KRKAGLITLAFLIAFITIANIS--IKSEDI-KNWNNANYWSENPKSAYPIWFCYITDKT- 59
Query: 77 APHKLYTINDVKMLNKGDDLGGGVRYYKFEFKYDFNYDVPPSNIIIKGIDIRLQDINTKA 136
+++ +G+ + +KFE + P+++I +
Sbjct: 60 --------RTTELIGEGNI----IYVHKFEDR--------PNDVIFYNA----------S 89
Query: 137 NLVITVHRPDGKSVEVYSGDFMEGMVIQLASDDIARSNIISWASQYESRSNLDKVVPTIV 196
V+T+ RPDG+ ++ ++L + NI S S+ N+ +
Sbjct: 90 GAVVTIVRPDGRIIK-----------LRLPKKEEISLNIYGKYS-IVSQLNIPPQKAALK 137
Query: 197 DVMKVLFGKAQTGILINPEPLKGTYTFDVELYTFNPEDQVNFDN--LKIIFTGRTYGYMG 254
+LF + + E LKG Y F ++N N ++I+ G YG G
Sbjct: 138 TATFLLFSSYK-----DLEVLKGKYIF-----------KINGTNKTIRIVIKGNCYGIFG 181
Query: 255 TDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMA 314
TD GRD+W G + GT ++++ + + ++FG++ G+ SAY ++++ E +A
Sbjct: 182 TDKYGRDMWVGFIAGTNNTILLTLLIGGSMLIFGIIIGIASAY-----NKLIDFILEVIA 236
Query: 315 SIPTLP---ILIMLAS----AFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYV 367
S P LP IL+ L S + +++ VL+L + A+ +S+ L+ + Y
Sbjct: 237 STPMLPFFMILVWLVSTQGIGYNVNISTIDFVLILTILSVGRFAKSIKSITLKERAMEYT 296
Query: 368 EAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQI 427
+A+I+LGA II +HI+ +L ++ + + + + L + GL V WG
Sbjct: 297 KASISLGADENWIIRRHILKPVLEFSLRHVTFIIAKTISLVSILGFFGLS--PGVNWGSY 354
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTAL 466
+ + YWW V+ L + ++SL+ L+ L
Sbjct: 355 MIELMREGVLYGNYWWIVLTLVLMMGVLSLSLALISERL 393
>dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 306
Score = 118 bits (294), Expect = 1e-25
Identities = 70/228 (30%), Positives = 120/228 (51%), Gaps = 12/228 (5%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTDD GRD++ + +G ++SL +G ++L G L GV + Y G W D ++ R +
Sbjct: 86 WFGTDDLGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLGVLAGYYGRWLDMLISRIFD 145
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLV---VFGWVGIARVSRSMALQIKEQTYVE 368
M + P++ + I + + + ++ + +V +FG R+ RS + ++ + ++
Sbjct: 146 IMLAFPSILLAIAIVAILGPSLHNAMVAIAIVNIPIFG-----RLVRSKVISLRAEEFIM 200
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVT-WGQI 427
AA A G RI+F HI+P L Q L A+L A L +LGLG + WG++
Sbjct: 201 AARAQGMKNSRILFHHILPNSLSPIIVQATLGFGTAILEAAALGFLGLGAQAPLAEWGKM 260
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
L D++A T W I PG++I LV L F ++G L L+P+++
Sbjct: 261 LADSRAYIQTAP---WVAIFPGMSIMLVVLGFNMIGDGLRDALDPKMK 305
>emb|CAC11409.1| (AL445063) probable dipeptide transport system permease protein
dppC [Thermoplasma acidophilum]
Length = 265
Score = 117 bits (291), Expect = 2e-25
Identities = 71/228 (31%), Positives = 121/228 (52%), Gaps = 7/228 (3%)
Query: 248 RTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMM 307
RTY +GT+ G D+ + +++ I I V + VL G L+G+ + Y GG+ DE++M
Sbjct: 42 RTY-LLGTNANGEDILSRMLYAMPRDAYISIIVVLSGVLLGGLFGIIAGYRGGYLDEVIM 100
Query: 308 RFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYV 367
R + S+P L ++I L+ F H TLG ++L LV+ W AR R+ L+IK +V
Sbjct: 101 RITDAFLSLPALILVIALSVLF--HETLGGVILALVIVWWPIYARFFRAQTLRIKNLDFV 158
Query: 368 EAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQ 426
+AA ++ F ++ + A AL +LT + L++LG+G +P G
Sbjct: 159 QAAKLGNVSFAKLFFSYLFINSIDPVVAYAALDFGNVILTYSTLAFLGIGLEPPIPELGS 218
Query: 427 ILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
+ A T+ WW+ + PGLAI ++ + FVL+G + +++ R+
Sbjct: 219 M---ASNGVGTLPTGWWYAVFPGLAILIIVIGFVLVGDRMQDIVSNRI 263
>pir||H72451 probable peptide transport system permease protein APE2260 -
Aeropyrum pernix (strain K1) >gi|5105961|dbj|BAA81272.1|
(AP000064) 280aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 280
Score = 116 bits (288), Expect = 5e-25
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 5/214 (2%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GT++ G D+++ +V GTRI L + + +V+ + GV G+ S Y GG D ++ + +
Sbjct: 62 GTNEIGYDMFSRVVLGTRIVLKVVLLSSVMGLAVGVPLGLVSGYFGGPVDRVLSVVMDSL 121
Query: 314 ASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIAL 373
+ P + + I +AS G L + L+VV+ R++R+ ++IK Q Y+ A L
Sbjct: 122 YAFPGIVLAIAIASVL-GPSVLNAAIALMVVYV-PAYFRMTRARVIEIKTQDYIVALRVL 179
Query: 374 GAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGL-GDPTAVTWGQILHDAQ 432
GA RI+F+H++P ++P L+ A+LTEAGLS+ GL A WG L +
Sbjct: 180 GAPHSRIMFRHVLPGVMPTVLVVYGLASADAILTEAGLSFFGLVVTYPAPDWG--LDISY 237
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTAL 466
++G WW + PGLAI ++L F ++G L
Sbjct: 238 GIKQFLSGSWWLTLFPGLAILTLALGFAMIGEGL 271
>gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T45530 probable
oligopeptide transport protein agaC [imported] -
Agrobacterium tumefaciens plasmid pTi15955
>gi|2665706|gb|AAB88466.1| (AF242881) agaC
[Agrobacterium tumefaciens]
Length = 275
Score = 116 bits (287), Expect = 7e-25
Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 18/231 (7%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++GTD+ GRD+ + L+ G R ++++ + +++ + G G+ AY +MR +
Sbjct: 54 WLGTDEFGRDILSRLLIGIRPTMLVAVISTIIAAVGGTACGIIGAYSRPTISFFVMRAVD 113
Query: 312 FMASIPTLPILIMLASAF--KGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEA 369
M S P + +L +LA F G +L +++ ++ + ARV++S ALQ+ Q +VEA
Sbjct: 114 IMLSFPAI-LLALLAVGFWRSGVASLSVVIGIIFI---PQFARVAQSAALQVISQEFVEA 169
Query: 370 AIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQIL 428
A+GA R++ + I+P +L Q L++ A+L E+GLS+LGLG P +WGQ++
Sbjct: 170 EHAMGARYLRVVMRAILPNILSPLVVQATLTIAAAILLESGLSFLGLGIVPPEPSWGQMI 229
Query: 429 HDAQAANATINGYW----WWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
T GY +V+ P L +AL L +LG AL L+PRLR
Sbjct: 230 -------GTARGYLGQNPMYVVWPSLCLALTVLAINVLGDALRDHLDPRLR 273
>dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [Ochrobactrum
anthropi]
Length = 291
Score = 115 bits (285), Expect = 1e-24
Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 6/221 (2%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD+ GRD+++ +V+G RI L++G + + +++GVL G + Y+GG D +MR +
Sbjct: 71 GTDNLGRDVFSRVVFGARIDLVVGFLLTYVPMIYGVLIGAYAGYIGGRFDATLMRIIDVA 130
Query: 314 ASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIAL 373
+ P L +LI++ A G I + + +V W AR++R+ + + + Y+ AA L
Sbjct: 131 MAFPFL-VLIVVILAILGPGIQNIYIAIFIV-AWTMYARLARAEMMVERTKDYMVAAKVL 188
Query: 374 GAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQ 432
G RIIF H +P ++ + ++ +GLS++GLG P A WG ++ + +
Sbjct: 189 GFPRSRIIFLHGLPNVINSSIVFSTSDFVLNIVLVSGLSFIGLGIQPPAPEWGSMIAEGR 248
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
+ WW + PG AI L + VL+G L R L R
Sbjct: 249 ---DFMRQAWWIAVLPGFAIVLTGMALVLIGDGLARRLGER 286
>sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLID
>gi|7442415|pir||H64820 probable oligopeptide transport
protein b0832 - Escherichia coli
>gi|1787054|gb|AAC73919.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062409|dbj|BAA35527.1| (D90721) Transmembrane
protein dppC [Escherichia coli]
>gi|4062417|dbj|BAA35535.1| (D90722) Transmembrane
protein dppC [Escherichia coli]
Length = 303
Score = 114 bits (283), Expect = 2e-24
Identities = 72/250 (28%), Positives = 130/250 (51%), Gaps = 14/250 (5%)
Query: 230 FNPEDQVNFDNLKIIFTGRTYGY-MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFG 288
++ E+ ++DNL G + + G D GRD+++ ++ G +ISL G+ + G
Sbjct: 63 YDAENYFDYDNLN---NGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIG 119
Query: 289 VLYGVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGI--IVLLLVVFG 346
L G+ + Y GW D ++MR + + + P I+LA A + GI +++ + +F
Sbjct: 120 TLLGLLAGYYEGWWDRLIMRICDVLFAFPG----ILLAIAVVAVLGSGIANVIIAVAIFS 175
Query: 347 WVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVL 406
AR+ R L +K+QT++E+A ++GA ++ +HI+P + + + +++
Sbjct: 176 IPAFARLVRGNTLVLKQQTFIESARSIGASDMTVLLRHILPGTVSSIVVFFTMRIGTSII 235
Query: 407 TEAGLSYLGLG-DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTA 465
+ A LS+LGLG P WG +L++A+A + P LAI L L F LLG
Sbjct: 236 SAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHV---AVFPALAIFLTVLAFNLLGDG 292
Query: 466 LDRVLNPRLR 475
L L+P+++
Sbjct: 293 LRDALDPKIK 302
>dbj|BAA98410.1| (AP002545) oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 284
Score = 113 bits (280), Expect = 5e-24
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 6/211 (2%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD GR ++A + G R+SL+I ++ V G+L+ + G D +MMR E +
Sbjct: 65 GTDTLGRCMFARTLRGLRLSLLIATIATLIDVCVGLLWATVAISGGKKIDFLMMRTTEIL 124
Query: 314 ASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIAL 373
S+P +PI+I+L F H L ++L + + GW+ I+R+ L +K + +V +A A+
Sbjct: 125 FSLPRIPIIILLLVIF--HHGLLALILAMTITGWIPISRIIYGQFLLLKNKPFVLSAKAM 182
Query: 374 GAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQ 432
A T I+ KH++P L + + ++P A+ TEA +S+LGLG P + G ++ +
Sbjct: 183 HASTFHILKKHLLPNTLAPIISTLIFTIPNAIYTEAFISFLGLGIQPPQASLGTLVKEGI 242
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLG 463
A I+ Y W P L + +S++F L+G
Sbjct: 243 NA---IDYYPWLFFFPSLIMIALSISFNLIG 270
>pir||E83419 probable permease of ABC transporter PA1808 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947792|gb|AAG05197.1|AE004607_3 (AE004607) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 339
Score = 113 bits (280), Expect = 5e-24
Identities = 71/225 (31%), Positives = 118/225 (51%), Gaps = 11/225 (4%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++GTDD+ RD+ A +++G R+S++ +++ VLS L GV G Y GGW D + RF E
Sbjct: 122 WLGTDDQARDVLARVIYGFRVSILFALTLTVLSSLIGVTVGALQGYYGGWVDLLGQRFLE 181
Query: 312 FMASIPTLPILIMLASAFKGHV--TLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEA 369
+ +P L +LI+LAS + + LGI++L F W+ + V R+ L+ + YV A
Sbjct: 182 VWSGLPVLYLLIILASFVQPNFWWLLGIMLL----FSWMSLVDVVRAEFLRGRNLEYVRA 237
Query: 370 AIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQIL 428
A ALG I+F+HI+P + + + GA+ T L +LG G P A + G+++
Sbjct: 238 ARALGMRNSAIMFRHILPNAMISTLTFMPFILTGAIGTLTSLDFLGFGLPPGAPSLGELV 297
Query: 429 HDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
++ W I + +A++ V +G A +PR
Sbjct: 298 AQGKSNLQAP----WLGISAFVVLAVMLSLLVFIGEAARDAFDPR 338
>pir||A83389 probable permease of ABC transporter PA2060 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948068|gb|AAG05448.1|AE004632_7 (AE004632) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 338
Score = 113 bits (280), Expect = 5e-24
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 7/223 (3%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++GTDD+GRD+ A +++G R+S++ + + + S L G+ G Y GGW D RF E
Sbjct: 121 WLGTDDQGRDVLARVIYGLRLSILFALGLTLASSLLGICAGAVQGYYGGWIDLFGQRFIE 180
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ +P L +LI+LAS + V G ++ ++++F W + V R+ L+ + YV+AA
Sbjct: 181 VWSGLPMLYLLIILASLVQPGV--GWLLAIMLLFSWTSLVDVVRAEFLRGRHLEYVKAAR 238
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
LG G ++F+HI+P + + + GAV T L +LG G P + + G+++
Sbjct: 239 TLGLGDAGVMFRHILPNAMVATLTFLPFLLCGAVTTLTALDFLGFGLPPGSPSLGELVGQ 298
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
+ + W + + L+SL V +G A+ +PR
Sbjct: 299 GR---DNLQAPWLGLTVFVVLATLLSL-LVFIGEAVRDAFDPR 337
>gi|10954709 hypothetical ABC-transporter gene~similar to dppC gene
[Agrobacterium rhizogenes] >gi|8918709|dbj|BAA97774.1|
(AB039932) hypothetical ABC-transporter gene~similar to
dppC gene [Agrobacterium rhizogenes]
>gi|10567373|dbj|BAB16182.1| (AP002086) hypothetical
ABC-transporter gene~similar to dppC gene [Agrobacterium
rhizogenes]
Length = 305
Score = 113 bits (279), Expect = 6e-24
Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 8/225 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GRD+ + G SL IG++ +L + G G+ + + GGW D ++MR +
Sbjct: 84 LGTDQLGRDVLMRCLVGLCYSLFIGVTTVILMFIVGCSLGLLAGFRGGWLDTVIMRLTDA 143
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
SIP + + I + T+ I+L+L + GW ARV+RS+AL + + YV
Sbjct: 144 QLSIPMIILAITILGV--SRPTVPAIILVLGLSGWPLYARVARSVALGERNRGYVLGERV 201
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
LGA RI+ + P +LP L + ++ E+ L +LGLG P T+G ++ D+
Sbjct: 202 LGASDLRIMLLFVAPVVLPPIAFVAVLDIARMMIFESILGFLGLGVQPPTPTFGNVIADS 261
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFV-LLGTALDRVLNPRLR 475
+ + WW PGL L+SLT + L+G+AL+R N LR
Sbjct: 262 R---KYLLNAWWIATMPGL-FMLISLTCLNLMGSALERARNAVLR 302
>sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075748|pir||D53290 oligopeptide transport protein
oppC - Lactococcus lactis subsp. lactis
>gi|149389|gb|AAA25166.1| (M76471) 'Sequence is part of
a 1.65-kb fragment of the lactose plasmid from
Lactococcus lactis subsp cremoris SK11 that facilitates
integration when plasmid is in L.lactis subsp. lactis.';
ORF >gi|308853|gb|AAA16166.1| (L18760) transmembrane
protein [Lactococcus lactis] >gi|495180|gb|AAB00536.1|
(U09553) transmembrane protein [Lactococcus lactis]
Length = 294
Score = 112 bits (278), Expect = 8e-24
Identities = 69/225 (30%), Positives = 115/225 (50%), Gaps = 9/225 (4%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD+ GRD+ L+ R S I +V +++++ G + GV + Y GG D + MRF +F
Sbjct: 71 LGTDNGGRDIIMMLMISARNSFNIAFAVTLITLVVGNILGVITGYFGGRFDLIFMRFTDF 130
Query: 313 MASIPTLPILIMLAS---AFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEA 369
+ +P++ I+I+ + F +GII +F W+G R+ R+ + + YV A
Sbjct: 131 VMILPSMMIIIVFVTIIPRFNSWSLIGII----SIFSWIGTTRLIRARTMTEVNRDYVRA 186
Query: 370 AIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQIL 428
+ G +I+F+ I P L A+ L G + E GLS+LG G P + G ++
Sbjct: 187 SKTSGTSDFKIMFREIWPNLSTLVIAEATLVFAGNIGLETGLSFLGFGLPAGTPSLGTMI 246
Query: 429 HDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
++A + W WV P + I +V L + +G AL RV + R
Sbjct: 247 NEATNPETMTDKPWTWV-PATVVILIVVLAIIFIGNALRRVADQR 290
>pir||F72107 peptide ABC transporter, permease protein CP0567 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376471|gb|AAD18353.1| (AE001606) Oligopeptide
Permease [Chlamydophila pneumoniae CWL029]
>gi|7189479|gb|AAF38386.1| (AE002215) peptide ABC
transporter, permease protein [Chlamydophila pneumoniae
AR39]
Length = 284
Score = 112 bits (278), Expect = 8e-24
Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 6/211 (2%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD GR ++A + G R+SL+I ++ V G+L+ + G D +MMR E +
Sbjct: 65 GTDTLGRCMFARTLRGLRLSLLIATIATLIDVCVGLLWATVAISGGKKIDFLMMRTTEIL 124
Query: 314 ASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIAL 373
S+P +PI+I+L F H L ++L + + GW+ I+R+ L +K + +V +A A+
Sbjct: 125 FSLPRIPIIILLLVIF--HHGLLPLILAMTITGWIPISRIIYGQFLLLKNKPFVLSAKAM 182
Query: 374 GAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQ 432
A T I+ KH++P L + + ++P A+ TEA +S+LGLG P + G ++ +
Sbjct: 183 HASTFHILKKHLLPNTLAPIISTLIFTIPNAIYTEAFISFLGLGIQPPQASLGTLVKEGI 242
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLG 463
A I+ Y W P L + +S++F L+G
Sbjct: 243 NA---IDYYPWLFFFPSLIMIALSISFNLIG 270
>pir||C72059 peptide ABC transporter, permease protein, probable CP0151
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376892|gb|AAD18736.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189087|gb|AAF38033.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39] >gi|8978969|dbj|BAA98804.1| (AP002547)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 579
Score = 111 bits (275), Expect = 2e-23
Identities = 61/216 (28%), Positives = 115/216 (53%), Gaps = 4/216 (1%)
Query: 260 RDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPTL 319
+DL A LV+G RI+L++ +++ G++ G+ S Y GG D ++ RF E ++P L
Sbjct: 366 KDLLAALVFGIRIALVVAGIGITIALAIGIMIGLVSGYFGGTVDMILSRFTEIWETMPVL 425
Query: 320 PILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGR 379
IL+++ S + +L + +LL F W G +R R L+ +++ YV AA LG
Sbjct: 426 FILMLVISITQ-QKSLLLNTVLLGCFSWTGFSRYVRIEVLKQRDRGYVLAATNLGYSHYY 484
Query: 380 IIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQAANATIN 439
I+ I+P + + + ++ + EAGL++LGLG+ ++ +WG ++ + +
Sbjct: 485 IMVHQILPNAIVPVISLVPFAMMAMISCEAGLTFLGLGEESSASWGNLMREGVTGFPAES 544
Query: 440 GYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
W PP + + ++ + L+G + L+PRL+
Sbjct: 545 AVLW---PPAIILTMLLIAIALIGDGVRDALDPRLQ 577
>pir||B82876 oligopeptide transport system permease protein UU561 [imported] -
Ureaplasma urealyticum
>gi|6899567|gb|AAF30974.1|AE002154_10 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 332
Score = 111 bits (274), Expect = 2e-23
Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 6/220 (2%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD+ GRDLWA L WG R SL I I V + ++ GV G+ Y + D++M + +
Sbjct: 119 GTDNNGRDLWAMLWWGLRYSLGIAIIVTAIELVVGVTLGILMGYFEMF-DKIMTFIIKIL 177
Query: 314 ASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIAL 373
++PT+ IL++L K + G+++ + GW+ +A RS + + +V A+ L
Sbjct: 178 TNVPTIIILMILTIILK--PSFGVMIFAISFSGWIAMANQMRSQVKRARSFLWVAASKTL 235
Query: 374 GAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQA 433
G +II + +P L+P Q+ S+PGA+L E+ L+++GL P T G ++ D +
Sbjct: 236 GTKAWKIIL-NFLPILIPMMITQLVFSIPGAILAESSLAFIGLSLPNTPTLGNLIADGSS 294
Query: 434 ANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
+ +IP L + LV+ ++ G D + R
Sbjct: 295 IITLYPRF--TLIPSFLLVCLVASIQLVGGATQDALRRQR 332
>gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 290
Score = 110 bits (273), Expect = 3e-23
Identities = 65/228 (28%), Positives = 110/228 (47%), Gaps = 2/228 (0%)
Query: 250 YGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRF 309
Y GT + ++ G + + I + + L G++ G+ + YLGG D ++M
Sbjct: 63 YLIFGTGPFAESILVQIIQGAKSVIEISFLAGLFATLIGIVVGIIAGYLGGIIDNILMGI 122
Query: 310 QEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEA 369
+ + ++P+L ++I++ SAFK + + L+L + W G+AR RS L I+ VE
Sbjct: 123 TDIILTLPSLILIIIIVSAFKTSNPI-FLSLILSITSWAGLARAVRSQVLVIRNSPAVEV 181
Query: 370 AIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILH 429
LG IIF+ ++P L Y +V AV E GL YLG+ WG ++
Sbjct: 182 LRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEAAVYAEVGLYYLGVLPYNPNNWGAMIQ 241
Query: 430 DAQAANATING-YWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
A + A G +++ P + +A +LL +D + NPR+RR
Sbjct: 242 QALSYGAAAGGKAIYYLAFPTIVVAGFMSGLILLSYGIDEISNPRIRR 289
>emb|CAC11414.1| (AL445063) ABC-transporter (orf C) related protein [Thermoplasma
acidophilum]
Length = 716
Score = 110 bits (272), Expect = 4e-23
Identities = 70/228 (30%), Positives = 112/228 (48%), Gaps = 14/228 (6%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GT D G+D+W+ + L IG+ V + +L ++ G+ Y G ++ F
Sbjct: 493 LGTTDHGKDVWSLFIGSFPTDLYIGVVVGIGILLISMVIGMLIGYFTGIVSSLVETFSLA 552
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVV------FGWVGIARVSRSMALQIKEQTY 366
+ IP LP+LI++AS G +G+I +L + F +GI R +K + +
Sbjct: 553 VYLIPGLPLLIVVASIV-GPSLIGLIAVLTFLSWPFPTFTLIGIIR-------SLKSRAF 604
Query: 367 VEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQ 426
VEAA GA T I+ KH++P + P A+++ GAV + L LG+ TWG
Sbjct: 605 VEAAKISGASTMYILRKHMLPNITPILVYLTAINIGGAVAAVSTLQILGVAPLNVPTWGG 664
Query: 427 ILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
+L + + WW IPP +A+ L F+ + LD V+NPRL
Sbjct: 665 MLSGFYSDYFDLIIAPWWFIPPIVALTLFIFAFIFVSRGLDEVVNPRL 712
>pir||C71510 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328913|gb|AAC68078.1| (AE001321)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 578
Score = 109 bits (271), Expect = 5e-23
Identities = 63/216 (29%), Positives = 115/216 (53%), Gaps = 4/216 (1%)
Query: 260 RDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPTL 319
+DL A L++G RI++++G +++ G++ G+ S Y GG D ++ R E ++P L
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVSIALFIGIIVGLLSGYFGGKVDMLLSRVTEIWETMPML 425
Query: 320 PILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGR 379
IL ML A +L + +LL FGWV I+R R L+ + YV AA L
Sbjct: 426 FIL-MLVVAITQKKSLILDSVLLGCFGWVSISRYVRIETLKQRNLGYVLAATNLCYSHYH 484
Query: 380 IIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQAANATIN 439
I+ I+P ++ + + S+ + EAGL++LGLG+ ++ +WG +L + A + +
Sbjct: 485 IMVHQILPNVIVPVISLLPFSMMAMISCEAGLTFLGLGEESSASWGNLLREGVTAFPSES 544
Query: 440 GYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
W PP + + L+ + ++G + L+P+++
Sbjct: 545 AILW---PPAIMLTLLLMAIAVIGDGIRDALDPKMQ 577
>gb|AAC69844.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 276
Score = 109 bits (271), Expect = 5e-23
Identities = 68/223 (30%), Positives = 116/223 (51%), Gaps = 7/223 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTDD GRDL+ ++ G R +L + + + V+ GV G+ + Y GW + +++RF +
Sbjct: 52 LGTDDYGRDLFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDV 111
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
SIP I+I LAS F+ +L +V+ + + W+ R++RS+ + Y++ A
Sbjct: 112 GLSIPEFIIMIALASFFQ--PSLWNLVISITLIKWMNYTRLTRSIVNSEMNKPYIKMAQL 169
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
T I+ +H+ P+++P + + +L + LS++GLG P WG +L
Sbjct: 170 FHVPTRTILIRHLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPTPEWGAML--- 226
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTAL-DRVLNPR 473
Q I+ + +I P IA+ L F L G AL DR+L R
Sbjct: 227 QQGRDFISSHPIMLIAPASVIAITILIFNLTGDALRDRLLKQR 269
>emb|CAC05749.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 305
Score = 109 bits (271), Expect = 5e-23
Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 8/230 (3%)
Query: 247 GRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMM 306
G +G+ G +G D++ V+G R S+ +GI + L G + G + + GG D ++
Sbjct: 83 GHPFGFNG---QGCDVYTRTVYGARTSVAVGILATLGVALLGSVLGGLAGFFGGGGDAVL 139
Query: 307 MRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTY 366
R + +IP + ++L S + T+ ++ +V+ GW I+R++R + K+ Y
Sbjct: 140 SRITDIFFAIPVVLGGLVLLSVITSN-TIWPVIGFIVLLGWPQISRIARGSVITAKQNDY 198
Query: 367 VEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWG 425
V+AA ALGA R++ +HI P + +++ + EA LS+LG+G P +V+WG
Sbjct: 199 VQAARALGASNSRLLLRHIAPNAVAPVIVVATIALGTYISLEATLSFLGVGLKPPSVSWG 258
Query: 426 QILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
D +A + ++ P A+A+ L F++LG A+ L+P+LR
Sbjct: 259 ---IDISSAAPYVRNAPHALLWPSGALAITVLAFIMLGDAVRDALDPKLR 305
>pir||F81668 peptide ABC transporter, permease protein, probable TC0763
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190788|gb|AAF39566.1| (AE002344) peptide ABC
transporter, permease protein, putative [Chlamydia
muridarum]
Length = 578
Score = 109 bits (270), Expect = 7e-23
Identities = 63/216 (29%), Positives = 116/216 (53%), Gaps = 4/216 (1%)
Query: 260 RDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPTL 319
+DL A L++G RI++++G +++ G + G+ S Y GG D ++ R E ++P L
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVTIALFIGTIVGLLSGYFGGKIDMLLSRVTEIWETMPML 425
Query: 320 PILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGR 379
IL ML A +L + +LL FGWV I+R R L+ + YV AA L
Sbjct: 426 FIL-MLVVAITQKKSLILDSVLLGCFGWVSISRYVRIETLKQRNLGYVLAATNLCYSHYH 484
Query: 380 IIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQILHDAQAANATIN 439
I+ I+P ++ + + S+ + EAGL++LGLG+ ++ +WG +L + +A + +
Sbjct: 485 IMVHQILPNVIVPVISLLPFSMMAMISCEAGLTFLGLGEESSASWGNLLREGVSAFPSES 544
Query: 440 GYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLR 475
W PP + + L+ ++ ++G + L+P+++
Sbjct: 545 AILW---PPAVMLTLLLMSIAVIGDGIRDALDPKMQ 577
>pir||D71545 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328606|gb|AAC67792.1| (AE001293)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 281
Score = 109 bits (269), Expect = 9e-23
Identities = 68/214 (31%), Positives = 116/214 (53%), Gaps = 6/214 (2%)
Query: 254 GTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFM 313
GTD+ GR + A + G R+SL+I +S ++ V G+L+ + G ++M R E +
Sbjct: 62 GTDNLGRCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTLALASGKKVADIMSRITEIL 121
Query: 314 ASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIAL 373
SIP +P++I+L F H L +I L + + GW+ IAR+ L ++ + +V +A AL
Sbjct: 122 FSIPRIPVIILLLVIFN-HGILPLI-LAMTITGWIPIARIIYGQFLLLENKEFVLSARAL 179
Query: 374 GAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQ 432
A T I+ KH++P L + + ++P AV TEA +S+LGLG P + G ++ +
Sbjct: 180 QASTFHILRKHLLPNSLGPIISTLIFTIPNAVYTEAFISFLGLGIQPPYASLGTLVKEGI 239
Query: 433 AANATINGYWWWVIPPGLAIALVSLTFVLLGTAL 466
+ A + W P + +VS++F +G L
Sbjct: 240 HSLAY---HPWLFFIPSFFMIIVSVSFNCIGEGL 270
>pir||G81699 peptide ABC transporter, permease protein TC0473 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190514|gb|AAF39321.1| (AE002315) peptide ABC
transporter, permease protein [Chlamydia muridarum]
Length = 287
Score = 109 bits (269), Expect = 9e-23
Identities = 68/236 (28%), Positives = 125/236 (52%), Gaps = 7/236 (2%)
Query: 232 PEDQVNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLY 291
P+ + F N + + + + GTD+ GR + A + G R+SL+I +S ++ V G+L+
Sbjct: 47 PDYEKTFPNYALQAPNKLFPF-GTDNLGRCMLARTLQGIRLSLLIAVSATIIDVCLGLLW 105
Query: 292 GVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIA 351
+ G + M R E + S+P +P++I+L F H L +I L + + GW+ IA
Sbjct: 106 STLALAGGKKIADFMSRITEILFSLPRIPVIILLLVIFN-HGILPLI-LAMTITGWIPIA 163
Query: 352 RVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGL 411
R+ L ++ + +V +A AL A T I+ KH++P L + + ++P AV TEA +
Sbjct: 164 RIIYDQFLLLENKEFVLSARALQASTFHILRKHLLPNTLGPIISTLIFTIPNAVYTEAFI 223
Query: 412 SYLGLG-DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTAL 466
S+LGLG P + G ++ + +++ + W P + ++S++F +G L
Sbjct: 224 SFLGLGIQPPYASLGTLVKE---GIHSLDYHPWLFFIPSFFMVIISVSFNCIGEGL 276
>sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMID
>gi|98017|pir||S11151 amiD protein - Streptococcus
pneumoniae >gi|47345|emb|CAA35215.1| (X17337) AmiD
protein [Streptococcus pneumoniae]
Length = 308
Score = 108 bits (266), Expect = 2e-22
Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 18/255 (7%)
Query: 228 YTFNPEDQVNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLF 287
+ FN +VN +++ I + + GTD G+ L+ G+ +G R S++I + V++++
Sbjct: 66 FDFNDVSKVNDFSVRYIKPNAEH-WFGTDSNGKSLFDGVWFGARNSILISVIATVINLVI 124
Query: 288 GVLYGVTSAYLGGW-----TDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLL 342
GV G G W D +MM +++IP P+LI++ + ++ +
Sbjct: 125 GVFVG------GIWGISKSVDRVMMEVYNVISNIP--PLLIVIVLTYSIGAGFWNLIFAM 176
Query: 343 VVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVP 402
V W+GIA + R L+ ++ Y A+ LG T +I+ K+IMPQL+ + +P
Sbjct: 177 SVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLP 236
Query: 403 GAVLTEAGLSYLGLGDP-TAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVL 461
+ EA LS+ GLG P T + G+++ D + N T N Y +W+ P + LVSL+ +
Sbjct: 237 SFISYEAFLSFFGLGLPITVPSLGRLISD-YSQNVTTNAYLFWI--PLTTLVLVSLSLFV 293
Query: 462 LGTALDRVLNPRLRR 476
+G L +PR R
Sbjct: 294 VGQNLADASDPRTHR 308
>gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-3) [Sulfolobus
solfataricus]
Length = 298
Score = 107 bits (264), Expect = 3e-22
Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 10/225 (4%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GT+ +G D+ + +++ + I V +++ G + G+ + YLGG DE++MR +
Sbjct: 79 LGTNAEGEDILSRILYALPRDAFVAIVVVFSAIIIGGILGILAGYLGGIVDEILMRVTDA 138
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
S+P L ++I + K T +L L V W AR R+ L+IK Y+ AA
Sbjct: 139 FLSLPALILVIAITVPLK--ATFFATILGLAVVWWPTYARFYRAQTLRIKNMDYISAAKL 196
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
+ +++I + A AL +LT + L++LG+G P G++
Sbjct: 197 SNVSRISLFYRYIFLNAIDPVLAYAALDFGNVILTYSTLAFLGIGITPPIPELGEM---- 252
Query: 432 QAANAT--INGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
AAN + YWWW + PGL I ++ + FVLLG L V+ R+
Sbjct: 253 -AANGVTGLPQYWWWALFPGLTILIIVVGFVLLGDRLQDVVAGRI 296
>emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 308
Score = 106 bits (261), Expect = 8e-22
Identities = 69/254 (27%), Positives = 134/254 (52%), Gaps = 16/254 (6%)
Query: 228 YTFNPEDQVNFDNLKIIFTGRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLF 287
Y FN +N + + I+ Y + GTD G+ L+ G+ +G R S++I + ++++
Sbjct: 66 YDFNDVSNINDFSKRYIWPNAEY-WFGTDKNGQSLFDGVGYGARNSILISVIATLINITI 124
Query: 288 GV----LYGVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLV 343
GV ++GV+ A+ D++M+ +++IP++ I+I+L + ++L
Sbjct: 125 GVVLGAIWGVSKAF-----DKVMIEIYNIISNIPSMLIIIVLTYSLGAG--FWNLILAFC 177
Query: 344 VFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPG 403
+ GW+G+A R L+ ++ Y A+ LG +I K+++PQL+ ++ +P
Sbjct: 178 ITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPV 237
Query: 404 AVLTEAGLSYLGLGDPTAV-TWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLL 462
V +E LS+ G+G PT + G+++ + ++N T N Y +W+ P + + LVSL ++
Sbjct: 238 YVSSETFLSFFGIGLPTTTPSLGRLIAN-YSSNLTTNAYLFWI--PLVTLILVSLPLYIV 294
Query: 463 GTALDRVLNPRLRR 476
G L +PR R
Sbjct: 295 GQNLADASDPRSHR 308
>gb|AAC69839.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 289
Score = 104 bits (256), Expect = 3e-21
Identities = 74/251 (29%), Positives = 124/251 (48%), Gaps = 12/251 (4%)
Query: 227 LYTFNPEDQVNFDNLKIIFTGRTYGYM-GTDDKGRDLWAGLVWGTRISLIIGISVAVLSV 285
L TF + ++ N F G ++ ++ GTD GRD+ L++ R SL+ +SV
Sbjct: 32 LVTFYDPNHIDTANK---FAGMSFQHLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSV 88
Query: 286 LFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVF 345
L G + G S Y G+ D ++MR + M + P+ + + L + F + I++ ++
Sbjct: 89 LIGSILGFLSGYFQGFVDALIMRACDVMLAFPSYVVTLALIALF--GMGAENIIMAFILT 146
Query: 346 GWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAV 405
W RV R+ +Q +V A +G +II KHIMP L + S+ +
Sbjct: 147 RWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMKIIHKHIMPLTLADIAIISSSSMCSMI 206
Query: 406 LTEAGLSYLGLG--DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLG 463
L +G S+LGLG PTA WG +L++A+ T + + PG+AI ++ + F L
Sbjct: 207 LQISGFSFLGLGVKAPTA-EWGMMLNEARKVMFT---HPEMMFAPGIAIVIIVMAFNFLS 262
Query: 464 TALDRVLNPRL 474
AL ++PR+
Sbjct: 263 DALQIAIDPRI 273
>sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKC
>gi|628768|pir||S39596 nikC protein - Escherichia coli
>gi|581141|emb|CAA51661.1| (X73143) NikC [Escherichia
coli] >gi|912461|gb|AAB18453.1| (U00039) nikC
[Escherichia coli] >gi|1789889|gb|AAC76503.1| (AE000423)
transport of nickel, membrane protein [Escherichia coli
K12]
Length = 277
Score = 102 bits (252), Expect = 9e-21
Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++GTD GRD+++ L+ TR+SL ++ +L + G++ G ++ +GG D+ MR +
Sbjct: 53 WLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVAD 112
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ PT + + +T II + L + W AR+ RS+ + ++++ +V A+
Sbjct: 113 MFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAW--YARMVRSLVISLRQREFVLASR 170
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG--DPTAVTWGQILH 429
GAG R+ H+ ++P L + +L AG+S+LGLG PTA WG +++
Sbjct: 171 LSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVTAPTA-EWGVMIN 229
Query: 430 DAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
DA+ T +W PGLA+ + + F L+G AL L+P L
Sbjct: 230 DARQYIWTQPLQMFW---PGLALFISVMAFNLVGDALRDHLDPHL 271
>gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
Length = 323
Score = 102 bits (251), Expect = 1e-20
Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 8/233 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD+ G D+ + ++ T SLI+GISV L + L G+ Y GG +++
Sbjct: 61 LGTDEFGHDVLSVMMASTLTSLIVGISVGALIAIISTLIGLFGGYYGGKISGVIIDILTI 120
Query: 313 MA-SIPTLPILIMLASAFKG-----HVTLG--IIVLLLVVFGWVGIARVSRSMALQIKEQ 364
A +IP + +L+++ + F+ ++TL I+V+ L + W A+ R+ L I ++
Sbjct: 121 TALTIPGVILLVIIEAYFRAASSTINITLSYIIVVIGLAITSWAFGAKQIRAQVLSISKR 180
Query: 365 TYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTW 424
Y+ A+ +G + RIIF I+P +LP AQ V +L+ + G+
Sbjct: 181 DYIIASRLIGEKSWRIIFNQILPSILPLTVAQFLFGVLYGILSLITAEFWGVLPTNINNL 240
Query: 425 GQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRRL 477
G +L + A ++ WWW++ + I ++ +L +D ++PRL+ +
Sbjct: 241 GTMLFFISSNGAYLSNQWWWILGAIIPIMVLGAGLGILNIGIDEFIDPRLKEV 293
>sp|P33915|YEJE_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJE
>gi|7442468|pir||B64987 hypothetical 38.1 kD protein in
bcr 5' region - Escherichia coli (strain K-12)
>gi|405908|gb|AAA16378.1| (U00008) yejE [Escherichia
coli] >gi|1736844|dbj|BAA15987.1| (D90849) DciAC protein
[Escherichia coli] >gi|1788505|gb|AAC75240.1| (AE000307)
putative transport system permease protein [Escherichia
coli K12]
Length = 341
Score = 101 bits (250), Expect = 2e-20
Identities = 64/226 (28%), Positives = 117/226 (51%), Gaps = 15/226 (6%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++GTD G D+ A +++GTRIS++ G+ + + S + GVL G Y GG D RF E
Sbjct: 122 WLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIE 181
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ +PTL ++I+L+S + + ++ + V+FGW+ + V R+ L+ + Y+ AA
Sbjct: 182 VWSGMPTLFLIILLSSVVQPN--FWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQ 239
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPT-AVTWGQIL-- 428
ALG II +H++P + + + ++ T L +LG G P + + G++L
Sbjct: 240 ALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQ 299
Query: 429 --HDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNP 472
++ QA W I L++A++ + +G A+ +P
Sbjct: 300 GKNNLQAP--------WLGITAFLSVAILLSLLIFIGEAVRDAFDP 337
>dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 283
Score = 100 bits (247), Expect = 3e-20
Identities = 64/215 (29%), Positives = 110/215 (50%), Gaps = 6/215 (2%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GRD+ L+ G + ++ + ++++ G+ +G+ S Y GG D + MR +
Sbjct: 62 LGTDHLGRDVLTRLLLGAQQTVGYSLMALLVALFIGIPFGLISGYKGGIVDRVFMRVADG 121
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
+ P + I+L+ + G +VL +V+ WV AR+ RS L E+ YV A
Sbjct: 122 FLAFPDTIVAIVLSGLLGPGI--GNLVLAIVMVKWVSYARLVRSTVLTEVEKDYVAIARI 179
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDA 431
G + +I+ KH+ P ++ + L + +L + LSY+GLG P WG +L+D+
Sbjct: 180 NGLSSSKIMRKHLFPHIVGHVLVMATLDLGKIILLISALSYIGLGAQPPTPEWGAMLNDS 239
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTAL 466
+ ++ +I PGLAI +V L +LG L
Sbjct: 240 RPYFQSMPQL---MIYPGLAIVIVVLLTNMLGDYL 271
>pir||T45277 oligopeptide transport integral membrane protein bldKA [imported] -
Streptomyces coelicolor >gi|1532201|gb|AAB09554.1|
(U68036) BldKA [Streptomyces coelicolor A3(2)]
Length = 335
Score = 99.8 bits (245), Expect = 6e-20
Identities = 60/231 (25%), Positives = 124/231 (52%), Gaps = 17/231 (7%)
Query: 259 GRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEFMASIPT 318
GRD++ L++G R S+ ++ ++ + GVL G+ Y GG + + R +F ++P+
Sbjct: 109 GRDVFTQLLYGMRNSMATALAATIIMTVLGVLIGLAGGYFGGKIEYWLGRITDFFMALPS 168
Query: 319 -------LPILIMLASA----FKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYV 367
+P++ + A +V I+++L GW+ +AR+ R + ++++ ++
Sbjct: 169 QLFFVAAMPVITTVFVAPDKETPTYVRAAAIIIVLSFLGWMSMARIVRGAKMSLRDREFI 228
Query: 368 EAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG--DPTAVTWG 425
EAA GA RI+ K ++P ++ Q L++P +L+ A LS++G+G +PT WG
Sbjct: 229 EAARISGASPWRILRKELLPNIVTPTLVQATLTLPSTILSIAFLSFVGVGYVEPTP-DWG 287
Query: 426 QILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
++ A A+ + ++++ PG+A+ + + F LLG ++ +P+ R
Sbjct: 288 RMF--AIGAD-IVEQDPYYMLFPGVAMVIFIVAFNLLGDSVRDAFDPKGNR 335
>pir||D81253 probable peptide ABC-transport system permease protein Cj1582c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968999|emb|CAB73570.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 264
Score = 99.5 bits (244), Expect = 8e-20
Identities = 65/218 (29%), Positives = 113/218 (51%), Gaps = 8/218 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+GTD GRDL++ L++ R SLIIG+ ++LS++F + Y + + MR EF
Sbjct: 49 LGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARC---FFYVFCMRILEF 105
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAIA 372
++P +++ S V L ++ L+ + W IAR+ S +++ + +A I
Sbjct: 106 FLALPAFLLMMFFQSMITSDVFL--MIFLIALIHWCFIARIIESELKRLENLDFYKANIV 163
Query: 373 LGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWGQILHDA 431
LG R FK ++P L F ++ A+ TEA LS+ GLG + T G +L +
Sbjct: 164 LGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGTLL--S 221
Query: 432 QAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRV 469
+++ A G WW ++ P L++ L+ L + LG L ++
Sbjct: 222 ESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKI 259
>dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 293
Score = 97.5 bits (239), Expect = 3e-19
Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 18/229 (7%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+G D GR + + L++G R S++ + L+VL G++ G + Y G D ++MR +
Sbjct: 56 LGNDHLGRCILSRLIYGIRPSVLSVLVALFLTVLIGLVLGFIAGYFRGKVDAVIMRICDI 115
Query: 313 MASIPTLPILIMLASAFKGHVTLGI--IVLLLVVFGWVGIARVSRSMALQIKEQTYVEAA 370
M S P ++ AF G +G+ I++ ++ W AR R+ +Q + YV+ A
Sbjct: 116 MLSFPG----YVMPLAFIGIFGVGLENILIAFILMKWAWFARAIRTSVMQYSQVDYVKFA 171
Query: 371 IALGAGTGRIIFKHIMPQLLPYAFAQIAL----SVPGAVLTEAGLSYLGLG-DPTAVTWG 425
A G +II+KHI +P FA +A+ S+ +L +G S+LGLG WG
Sbjct: 172 KASGIHDLKIIYKHI----VPVTFADVAVISSGSISSMILQISGFSFLGLGIQAPHAEWG 227
Query: 426 QILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
+L++A+ + ++ PGLAI +V F L AL L+P+L
Sbjct: 228 MMLNEARNVMFSRPEL---MLAPGLAIIIVVAAFNFLSDALQVALDPKL 273
>emb|CAA68075.1| (X99740) oligopeptide transport system permease protein homolog
[Mycoplasma hominis]
Length = 424
Score = 95.6 bits (234), Expect = 1e-18
Identities = 61/224 (27%), Positives = 108/224 (47%), Gaps = 7/224 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGV-TSAYLGGWTDEMMMRFQE 311
+GT G D+W + T ++ I + V +L + G+ G Y G D ++MR E
Sbjct: 199 LGTSSIGYDIWTTAWYATWRAIKIALIVVILEAIIGISIGAFLGFYAGKLIDTIIMRVIE 258
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+ PTL +++ S + +VL L + GW G ++R + +K++ ++ AA
Sbjct: 259 IFLAPPTLIWILLFVSIIGANEWS--LVLTLTIVGWPGFVGITRMFIITVKDEEFIIAAK 316
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLG-LGDPTAVTWGQILHD 430
A+G GT R IF H +P ++ I SVPG +L A L++LG + GQ+L +
Sbjct: 317 AIGVGTPRRIFVHALPTIIGKIANNIVRSVPGVILWIASLAFLGFFKEKKDTNLGQMLIE 376
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
A+ + W + P + + +SL+ + + L+PR+
Sbjct: 377 ---ASQEVGSNIWIIALPTIILLFLSLSLNFIALGVHDALDPRV 417
>gb|AAC18098.1| (AF058302) membrane component of putative ABC transporter
[Streptomyces roseofulvus]
Length = 274
Score = 95.2 bits (233), Expect = 2e-18
Identities = 70/218 (32%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+G D GRDL+A +V GT SL + L VL G G + G D ++MR +
Sbjct: 58 LGADHVGRDLYARVVHGTARSLGTAFAAVALGVLAGGALGAVAGVAGRAVDAVVMRVVDV 117
Query: 313 MASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVG-IARVSRSMALQIKEQTYVEAAI 371
+ ++P L + + + SA G T + + V G VG IARVSR+ +++ YVEAA
Sbjct: 118 LLAVPGLLLSLAVVSAL-GFGTAQVACAVGV--GTVGGIARVSRAQVRRVRGGEYVEAAR 174
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
G I+ +HI+P P A AVL A L +LG G P A WG ++
Sbjct: 175 LAGVAGPLILLRHIVPNAAPPVLALAVTECGTAVLGVASLGFLGFGAPPPAPEWGALI-- 232
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDR 468
+ WW PGL + + + +G AL+R
Sbjct: 233 -STGRDYLVSAWWLTTLPGLVLVALVVALHRVGRALER 269
>sp|P75553|OPPC_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|2146482|pir||S73941 oligopeptide transport system
permease protein amiD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674317|gb|AAB96263.1| (AE000058)
oligopeptide transport system permease protein AmiD
[Mycoplasma pneumoniae]
Length = 376
Score = 94.8 bits (232), Expect = 2e-18
Identities = 67/233 (28%), Positives = 121/233 (51%), Gaps = 12/233 (5%)
Query: 250 YGYMGTDDKGRDLWAGLVWGTRI-SLIIGISVAVLSVLFGVLYG-VTSAYLGGWTDEMMM 307
Y +GT+ G D+W L+W + SL I I VA++S++FG +YG + +++G D +M
Sbjct: 149 YPLLGTNGLGVDIWT-LLWASMAKSLWIAIVVALVSMVFGTIYGAIAGSFVGRAADNIMS 207
Query: 308 RFQEFMASIPTLPILIMLASAFK-GHVTL---GIIVLLLVVFGWVGIARVSRSMALQIKE 363
R E + +P++ +I+L + F+ G V +++ L+ W A +R L+ K+
Sbjct: 208 RIIEIIDLVPSILWIIVLGATFRFGGVKQFDDSVVIFTLIFVFWTWPAATTRIYILKNKD 267
Query: 364 QTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVT 423
Y++AA LGA RIIF H++P + +P + EA L +LGL T V
Sbjct: 268 TEYIQAARTLGAKQIRIIFVHMLPVVTGRLAVVFVSLIPAVIGYEASLVFLGLKPATEVG 327
Query: 424 WGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
G +L+ T +G + ++ A+++++ + AL+ ++PR+ R
Sbjct: 328 LGALLN-----QVTSSGNIALITSSIVSFAILTVSTRVFANALNDAIDPRVIR 375
>gb|AAC67219.1| (U78968) transmembrane transport protein DppC [Streptococcus
pyogenes]
Length = 274
Score = 93.6 bits (229), Expect = 4e-18
Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 5/223 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD GRD++ + G SL +G+ A++ V F ++GV + D+++ +
Sbjct: 52 FFGTDGLGRDMFVRTIKGLYFSLQVGLLGALMGVFFATVFGVLAGLGNSLIDKIIAWLVD 111
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
+P L +I++ G G+I+ V W +ARV R+ +K + +V+ +
Sbjct: 112 LFIGMPHLIFMILIFFVV-GKGAQGVIIATAVTH-WPFLARVIRNEVYDLKNKAFVQLSK 169
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
++G I+ HI+P + F L P +L EA +++LG G + G IL
Sbjct: 170 SMGKTPYYIVRHHILPLIASQIFIGFILLFPHVILHEASMTFLGFGLSAEQPSVGIIL-- 227
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPR 473
++AA G WW V+ PGL + LV F +G +L ++ P+
Sbjct: 228 SEAAKHISLGNWWLVVFPGLYLILVVNAFDTIGESLKKLFYPQ 270
>sp|P47324|OPPC_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1361736|pir||F64208 oligopeptide transport system
permease dciAC homolog - Mycoplasma genitalium
>gi|1045755|gb|AAC71296.1| (U39688) oligopeptide ABC
transporter, permease protein (oppC) [Mycoplasma
genitalium]
Length = 376
Score = 90.9 bits (222), Expect = 3e-17
Identities = 60/227 (26%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYG-VTSAYLGGWTDEMMMRFQE 311
+GT+ G D+W L SL I + VA+++++FG +YG V +++G D +M R E
Sbjct: 152 LGTNGLGIDIWTLLWASVAKSLWIAVVVAIIAMVFGTIYGAVAGSFVGHMADNIMSRIIE 211
Query: 312 FMASIPTLPILIMLASAFK-GHVTL---GIIVLLLVVFGWVGIARVSRSMALQIKEQTYV 367
+ +P++ +I+L + F+ G V +++ L+ W A +R L+ K+ Y+
Sbjct: 212 IIDIVPSILWIIVLGATFRFGGVKQFDDSVVIFTLIFVFWTWPATTTRIYILKNKDTEYI 271
Query: 368 EAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVTWGQI 427
+AA LGA RIIF H++P + +P + EA L +LGL T + G +
Sbjct: 272 QAAKTLGAHQIRIIFVHMLPVVFGRLAVVFVSLIPAVIGYEASLVFLGLKPATDIGLGAL 331
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRL 474
L+ +++ ++ ++ A++++ AL+ ++PR+
Sbjct: 332 LNQVTSSDNVA-----LILSSIVSFAVLTVAARTFANALNDAIDPRV 373
>dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus]
Length = 295
Score = 89.3 bits (218), Expect = 9e-17
Identities = 64/224 (28%), Positives = 111/224 (48%), Gaps = 12/224 (5%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++GTDD GRD+ + L+ G++++ +++ ++ + G L GV + G + +
Sbjct: 76 FLGTDDLGRDILSRLIMGSQLTFGAAVAITAIAAVVGCLIGVLAGMTKGLLSSTLNHLLD 135
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIK---EQTYVE 368
+ SIP+L +L ++ AF G I++ + + I R RS+ + + E+ Y+
Sbjct: 136 TVMSIPSL-LLAIIFVAFLGFGGFNILLAICLAL----IPRFIRSVYIAVHTEVEKDYIM 190
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVT-WGQI 427
AA GA +++ I+P +L A+I L++ A+L L +LGLG T WG I
Sbjct: 191 AARLDGANDFYLLWSSILPNILTVIAAEITLALSAAILDITALGFLGLGAQAPSTEWGAI 250
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLN 471
L D+ I W V PGL I +T L+G + + LN
Sbjct: 251 LGDSV---ELIYIAPWTVTLPGLTIMFTVITLNLVGEGVRQALN 291
>pir||A70193 oligopeptide ABC transporter, permease protein (oppC-2) homolog -
Lyme disease spirochete >gi|2688677|gb|AAC67088.1|
(AE001174) oligopeptide ABC transporter, permease
protein (oppC-2) [Borrelia burgdorferi]
Length = 286
Score = 87.4 bits (213), Expect = 3e-16
Identities = 62/231 (26%), Positives = 116/231 (49%), Gaps = 22/231 (9%)
Query: 253 MGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQEF 312
+G D GRD+ A L+ TR S+++ +S A +S + G+ G +G ++ E+ M +
Sbjct: 63 LGIDKMGRDIMARLIIATRNSILLSLSYATISAIIGIFIGTI---IGMFSFEICMLISKP 119
Query: 313 MASIPTLPILIMLASAF------KGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTY 366
+ ++ TLP +++ F K + L LL ++ GW+ A ++R+ L IK Y
Sbjct: 120 IETLQTLPFFYVVSLVFYYFLKQKTYNMLQTATLLALIHGWIRFAFIARNNTLIIKNLDY 179
Query: 367 VEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV-TWG 425
++A+ A+GA RII HI P++ + I L + ++ T +S+L D + G
Sbjct: 180 IKASEAMGASKIRIILYHIFPEVFSSISSIIPLQMGRSLTTFEVVSFLQKQDKNLYPSLG 239
Query: 426 QILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLNPRLRR 476
++L+ Q N + W W+ P + L+ + +L ++N +LR+
Sbjct: 240 ELLNYMQMGNKYL---WIWINP---LLILIGINIIL------AIINFKLRK 278
>pir||D82170 peptide ABC transporter, permease protein VC1682 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656198|gb|AAF94832.1| (AE004246) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 295
Score = 82.3 bits (200), Expect = 1e-14
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 12/224 (5%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
++GTDD GRD+ + L+ G+ S+ + + +++ L G G + G + +
Sbjct: 76 FLGTDDLGRDILSRLIDGSLFSIGAAVLITLIATLVGGTIGALAGMTKGLLSSTLNHILD 135
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIK---EQTYVE 368
+ SIP+L +L ++ AF G I L+ G I R RS+ + + E+ YV
Sbjct: 136 TVMSIPSL-LLAIIFVAFLGAGEFNI----LLAIGLALIPRFIRSVYVAVHNEVEKDYVM 190
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAVT-WGQI 427
AA GA +++ I P +LP A+I +++ A+L L +LGLG + T WG +
Sbjct: 191 AARLDGANEFYLLWHSIFPNILPIIVAEITMALSIAILDITALGFLGLGAQSPSTEWGAM 250
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVLN 471
L D+ I W V PGLAI + L+G + LN
Sbjct: 251 LGDSV---ELIYIAPWTVTLPGLAIMFTVVVINLVGDGARQALN 291
>gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 270
Score = 80.4 bits (195), Expect = 4e-14
Identities = 63/219 (28%), Positives = 101/219 (45%), Gaps = 6/219 (2%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQE 311
+ GTD+ GRD+W G SL IG+ A+ S + ++ A + D ++ +
Sbjct: 50 WFGTDNLGRDVWLRCFQGAFTSLQIGVGAALCSGVIALVMAAV-ARIHPRLDLLVRLITD 108
Query: 312 FMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVEAAI 371
M ++P L +LI++ G + G+I + + W +A + R+ A ++ + Y+
Sbjct: 109 AMLAMPHLLLLILICFTLGGGKS-GVIAAVALTH-WPRLALILRADAERVAQSDYLTLTY 166
Query: 372 ALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQILHD 430
LG G H P LLP L P AVL A LS+LG G P + G +L
Sbjct: 167 RLGHGHLYCWRYHYFPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLL-- 224
Query: 431 AQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRV 469
A A +G WW V+ PGL + + + F A+ R+
Sbjct: 225 ADALRFISHGNWWLVLFPGLMLFTLVMLFDQFARAIQRL 263
>emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi]
Length = 296
Score = 80.4 bits (195), Expect = 4e-14
Identities = 67/229 (29%), Positives = 108/229 (46%), Gaps = 14/229 (6%)
Query: 247 GRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMM 306
G+ ++GTDD GRDL + L+ G + + V + + L G+L G+ + G ++
Sbjct: 72 GKCRFFLGTDDLGRDLLSRLLSGAAPTFGPALLVTLAATLVGILIGMLAGVTHGLRSAVL 131
Query: 307 MRFQEFMASIPTLPILIMLASAFKG----HVTLGIIVLLLVVFGWVGIARVSRSMALQIK 362
+ + SIP+L +L M+ AF G H L + + LL + R S
Sbjct: 132 NHILDPLLSIPSL-LLAMVVIAFIGPQLTHAMLAVWMALL-----PRMVRTIYSAVHDEL 185
Query: 363 EQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLGDPTAV 422
E+ YV AA GA T +++ ++P +LP +++ + A+L A L +L LG
Sbjct: 186 EKEYVTAARLDGASTRYLLWYAVVPNILPVLVSEVTRAFSIAILDIAALGFLNLGAQLPT 245
Query: 423 T-WGQILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVL 470
T WG +L ++ + W V+ PG AI L L LLG + R L
Sbjct: 246 TEWGVLLGNSL---ELVYAAPWTVMLPGTAITLSVLIVNLLGDGIRRAL 291
>dbj|BAB13782.1| (AB038238) NikC [Vibrio parahaemolyticus]
Length = 271
Score = 73.4 bits (177), Expect = 6e-12
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 15/215 (6%)
Query: 252 YMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRFQ- 310
+ GTD GRD+++ T +L+ +S+ +++ F + A + M
Sbjct: 48 WFGTDWLGRDMFSR----TLKALMHSLSMTGIAIFFSASIALMLAIIANLNRRWNMLIDF 103
Query: 311 --EFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTYVE 368
+ S+P+L +L++L +F G + G++ + + W + R+ +S + Y+
Sbjct: 104 IVDCALSLPSLLLLMILTVSF-GSGSQGVM-FAIALSHWPKLTRLCKSEIQSLMCSDYMS 161
Query: 369 AAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWGQI 427
A+ G +I +H P LLP + L +P +L A LS+LG G DPT + G+I
Sbjct: 162 HALNFGHKKIHVILQHAFPHLLPQWMTGMLLLLPHGLLHSAALSFLGFGSDPTRASMGKI 221
Query: 428 LHDAQAANATINGYWWWVIPPGLAIALVSLTFVLL 462
+A + + G WW + PGL ++ T +LL
Sbjct: 222 FDEAN--SYLLTGQWWLAVLPGL---MLVFTIILL 251
>sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|628819|pir||S39587 peptide transport system permease
sapC - Salmonella typhimurium >gi|414210|emb|CAA52286.1|
(X74212) sapC [Salmonella typhimurium]
Length = 296
Score = 72.2 bits (174), Expect = 1e-11
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 6/225 (2%)
Query: 247 GRTYGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMM 306
G ++GTDD GRD+ + L+ G ++ V + + L G++ GV + G ++
Sbjct: 72 GEVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFIVTLAATLCGLVLGVVAGATHGLRSAVL 131
Query: 307 MRFQEFMASIPTLPILIMLASAFKGHVTLGIIVLLLVVFGWVGIARVSRSMALQIKEQTY 366
+ + SIP+L + I++ + H++ + + L + + R SM E+ Y
Sbjct: 132 NHILDTLLSIPSLLLAIIVVAFAGPHLSHAMFAVWLALL--PRMVRSVYSMVHDELEKEY 189
Query: 367 VEAAIALGAGTGRIIFKHIMPQLLPYAFAQIALSVPGAVLTEAGLSYLGLG-DPTAVTWG 425
V AA GA T I++ I+P + +I ++ A+L A L +L LG + WG
Sbjct: 190 VIAARLDGATTLNILWFAILPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWG 249
Query: 426 QILHDAQAANATINGYWWWVIPPGLAIALVSLTFVLLGTALDRVL 470
+L DA I W V+ PG AI L L LLG + R +
Sbjct: 250 AMLGDAL---ELIYVAPWTVMLPGAAITLSVLLVNLLGDGIRRAI 291
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.142 0.439
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182166970
Number of Sequences: 2977
Number of extensions: 7989205
Number of successful extensions: 21227
Number of sequences better than 1.0e-10: 134
Number of HSP's better than 0.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 20879
Number of HSP's gapped (non-prelim): 182
length of query: 477
length of database: 189,106,746
effective HSP length: 52
effective length of query: 425
effective length of database: 157,985,422
effective search space: 67143804350
effective search space used: 67143804350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 167 (69.5 bits)