BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1196 (appD-1) DE:OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN
APPD.
(319 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75026 oligopeptide transport ATP-binding protein appd. PAB... 649 0.0
pir||G71211 probable oligopeptide transport ATP-binding protein ... 634 0.0
pir||E72536 probable oligopeptide transport ATP-binding protein ... 402 e-111
gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (d... 331 6e-90
pir||A72371 oligopeptide ABC transporter, ATP-binding protein - ... 319 4e-86
gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis] 315 4e-85
pir||F75202 dipeptide abc transporter, dipeptide-binding protein... 311 6e-84
pir||E71130 probable oligopeptide transport ATP-binding protein ... 309 4e-83
pir||D72371 oligopeptide ABC transporter, ATP-binding protein - ... 307 9e-83
pir||F71014 probable dipeptide transport ATP-binding protein dpp... 306 3e-82
gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocy... 304 8e-82
pir||D72289 oligopeptide ABC transporter, ATP-binding protein - ... 304 1e-81
pir||F72617 probable dipeptide transport system ATP-binding prot... 303 2e-81
emb|CAC05750.1| (AL391751) putative peptide transport system ATP... 301 9e-81
gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola] 300 1e-80
pir||C72300 oligopeptide ABC transporter, ATP-binding protein - ... 299 3e-80
pir||H75117 peptide abc transporter ATP-binding protein PAB1874 ... 299 3e-80
dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 298 6e-80
pir||H72215 oligopeptide ABC transporter, ATP-binding protein - ... 298 8e-80
gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana] 297 1e-79
dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 293 1e-78
sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 293 2e-78
pir||H75380 peptide ABC transporter, ATP-binding protein - Deino... 293 2e-78
pir||C75142 oligopeptide transport ATP-binding protein appf PAB0... 293 3e-78
pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd... 293 3e-78
gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis] 292 3e-78
pir||D38447 sporulation initiation protein spo0KD - Bacillus sub... 292 3e-78
sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 292 3e-78
pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf... 292 4e-78
dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding prot... 291 6e-78
sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 291 6e-78
sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 290 1e-77
pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 ... 289 3e-77
pir||G71014 probable dipeptide transport ATP-binding protein dpp... 289 4e-77
pir||T34759 oligopeptide ABC transporter ATP-binding protein - S... 289 4e-77
gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD... 288 5e-77
pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC... 288 5e-77
pir||A72452 probable peptide transport ATP-binding protein APE22... 287 8e-77
sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 287 1e-76
pir||D71163 probable oligopeptide transport ATP-binding protein ... 287 1e-76
pir||QREBOT oligopeptide transport protein oppD - Salmonella typ... 286 3e-76
dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 284 1e-75
sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 283 2e-75
pir||B72421 oligopeptide ABC transporter, ATP-binding protein - ... 282 3e-75
pir||D72393 oligopeptide ABC transporter, ATP-binding protein - ... 282 4e-75
pir||G72283 oligopeptide ABC transporter, ATP-binding protein - ... 281 6e-75
pir||T45280 probable ABC transporter intracellular ATPase chain ... 279 2e-74
pir||F72428 oligopeptide ABC transporter, ATP-binding protein - ... 277 1e-73
pir||B72282 oligopeptide ABC transporter, ATP-binding protein - ... 277 1e-73
sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 275 4e-73
emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related ... 273 2e-72
sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 273 2e-72
dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 272 5e-72
pir||C72424 oligopeptide ABC transporter, ATP-binding protein - ... 271 7e-72
gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sul... 271 9e-72
dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 270 1e-71
pir||B72424 oligopeptide ABC transporter, ATP-binding protein - ... 270 2e-71
pir||F71130 probable oligopeptide transport ATP-binding protein ... 269 4e-71
gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [H... 268 6e-71
pir||C72289 oligopeptide ABC transporter, ATP-binding protein - ... 267 1e-70
pir||F83082 probable ATP-binding component of ABC dipeptide tran... 267 1e-70
sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 265 4e-70
emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD)... 264 9e-70
pir||A72216 oligopeptide ABC transporter, ATP-binding protein - ... 264 1e-69
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 263 2e-69
emb|CAA61525.1| (X89237) oligopeptidepermease [Streptococcus pyo... 263 2e-69
gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . ... 263 3e-69
pir||T35982 probable peptide transport ATP-binding protein - Str... 263 3e-69
pir||A72618 probable oligopeptide transport ATP-binding protein ... 262 4e-69
pir||E64557 dipeptide transport ATP-binding protein dppD - Helic... 261 1e-68
sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 260 2e-68
pir||H71951 dipeptide transport system dipeptide transport syste... 260 2e-68
gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dp... 259 2e-68
sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 257 9e-68
sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 257 9e-68
sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 257 2e-67
sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 256 3e-67
dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 255 6e-67
pir||B72300 oligopeptide ABC transporter, ATP-binding protein - ... 254 8e-67
gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF... 253 2e-66
sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 250 1e-65
pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC... 249 3e-65
gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia... 249 4e-65
sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 249 4e-65
sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 247 1e-64
pir||F71211 probable oligopeptide transport ATP-binding protein ... 247 1e-64
pir||F75026 oligopeptide transport ATP-binding protein appf. PAB... 246 3e-64
pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 ... 244 9e-64
pir||E83082 probable ATP-binding component of ABC transporter PA... 244 9e-64
emb|CAC05751.1| (AL391751) putative peptide transport system ATP... 244 9e-64
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 244 1e-63
dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [O... 243 1e-63
sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 243 2e-63
pir||G75380 peptide ABC transporter, ATP-binding protein - Deino... 243 3e-63
dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 243 3e-63
pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 ... 242 3e-63
gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus ... 242 4e-63
pir||H72366 oligopeptide ABC transporter, ATP-binding protein - ... 242 4e-63
gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-bindi... 242 6e-63
emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport s... 242 6e-63
pir||B69856 oligopeptide transport ATP-binding protein homolog y... 240 2e-62
dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [O... 238 5e-62
gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis] ... 238 9e-62
sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 236 2e-61
emb|CAA39791.1| (X56347) OppF [Bacillus subtilis] 236 2e-61
gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus ... 235 6e-61
gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis] 232 4e-60
pir||T03431 probable transport protein accB - Agrobacterium tume... 232 5e-60
gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter A... 231 6e-60
gi|10954941 Probable accB [Agrobacterium tumefaciens] >gi|649829... 231 8e-60
pir||T34760 oligopeptide ABC transporter ATP-binding protein - S... 231 1e-59
pir||C72452 probable peptide transport ATP-binding protein APE22... 231 1e-59
pir||F71483 probable dipeptide transport - Chlamydia trachomatis... 230 1e-59
pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei ... 229 2e-59
gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding;... 229 2e-59
sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 229 4e-59
gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 228 6e-59
pir||D72720 probable oligopeptide transport ATP-binding protein ... 228 1e-58
pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 ... 228 1e-58
sp|P50980|OPPD_LACLC OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 226 2e-58
sp|Q07733|OPPD_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 226 4e-58
gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (d... 224 8e-58
dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-bindin... 224 1e-57
sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 224 1e-57
pir||F71163 probable oligopeptide transport ATP-binding protein ... 224 1e-57
gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola] 224 1e-57
emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding pr... 220 1e-56
emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding prot... 219 4e-56
gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T... 217 1e-55
pir||D75142 oligopeptide transport ATP-binding protein appf PAB0... 217 2e-55
pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf... 213 2e-54
pir||E70141 oligopeptide transport ATP-binding protein oppD - Ly... 212 4e-54
gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T... 212 4e-54
pir||D83419 probable ATP-binding component of ABC transporter PA... 212 5e-54
pir||F64557 dipeptide transport ATP-binding protein dppF - Helic... 210 2e-53
pir||A71952 dipeptide transport system ATP-binding protein - Hel... 210 2e-53
pir||C72536 probable oligopeptide transport ATP-binding protein ... 208 7e-53
pir||T03432 probable transport protein accC - Agrobacterium tume... 207 1e-52
gi|10954942 Probable accC [Agrobacterium tumefaciens] >gi|649829... 207 2e-52
dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elon... 205 6e-52
pir||T35983 probable peptide transport ATP-binding protein - Str... 205 6e-52
sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 205 8e-52
dbj|BAA15988.1| (D90849) Oligopeptide transport ATP-binding prot... 205 8e-52
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 204 1e-51
sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 203 2e-51
gb|AAD48155.1|AF086619_1 (AF086619) ABC transporter homolog [Loo... 203 2e-51
gi|10954710 hypothetical ABC-transporter gene~similar to moaD ge... 202 5e-51
pir||C72421 oligopeptide ABC transporter, ATP-binding protein - ... 201 7e-51
pir||F70141 probable oligopeptide transport ATP-binding protein ... 201 9e-51
emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyo... 199 3e-50
gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus p... 199 3e-50
pir||B83389 probable ATP-binding component of ABC transporter PA... 197 1e-49
sp|P77622|YDDO_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 196 2e-49
pir||A82876 oligopeptide transport system permease protein UU560... 196 2e-49
gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocy... 195 5e-49
emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter... 195 5e-49
pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 ... 194 9e-49
sp|Q07734|OPPF_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 190 1e-47
sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 190 2e-47
sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 189 5e-47
gb|AAF73561.1| (AE002315) peptide ABC transporter, ATP-binding p... 182 4e-45
dbj|BAA15129.1| (D90788) Dipeptide transport ATP-binding protein... 182 5e-45
pir||E72393 oligopeptide ABC transporter, ATP-binding protein - ... 180 2e-44
gb|AAF77616.1|AF151721_2 (AF151721) oligopeptide permease subuni... 177 1e-43
pir||H70788 probable peptidetransport system ABC-transporter ATP... 176 2e-43
pir||E71545 probable oligopeptide transport ATPase - Chlamydia t... 176 4e-43
gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus ... 174 1e-42
sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 157 2e-37
sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 153 2e-36
emb|CAA10913.1| (AJ222649) sapF [Erwinia chrysanthemi] 146 2e-34
gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus ... 145 7e-34
sp|P16678|PHNK_ECOLI PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN ... 142 5e-33
pir||B83224 probable ATP-binding component of ABC transporter PA... 141 8e-33
pir||S56325 hisP protein-like nucleotide-binding protein phnK - ... 140 2e-32
sp|P46920|OPAA_BACSU GLYCINE BETAINE TRANSPORT ATP-BINDING PROTE... 136 5e-31
dbj|BAA08932.1| (D50453) glycine betain/L-proline transport ATPa... 136 5e-31
gi|10955047 ophD [Agrobacterium tumefaciens] >gi|7445601|pir||S7... 134 1e-30
sp|P14175|PROV_ECOLI GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BIN... 129 4e-29
pir||B45917 nucleotide-binding protein proV - Salmonella typhimu... 128 1e-28
gb|AAD29104.1|AF039835_1 (AF039835) ATPase homolog GbuA [Listeri... 127 1e-28
sp|P17328|PROV_SALTY GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BIN... 127 2e-28
pir||B75082 phosphate abc transporter, ATP-binding protein (pstb... 125 7e-28
sp|P45171|POTA_HAEIN SPERMIDINE/PUTRESCINE TRANSPORT ATP-BINDING... 124 1e-27
sp|P02915|HISP_SALTY HISTIDINE TRANSPORT ATP-BINDING PROTEIN HIS... 123 2e-27
sp|P55662|Y4TH_RHISN PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BIN... 123 2e-27
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permeas... 123 2e-27
pir||C75369 amino acid ABC transporter, ATP-binding protein - De... 122 4e-27
sp|P07109|HISP_ECOLI HISTIDINE TRANSPORT ATP-BINDING PROTEIN HIS... 121 1e-26
pir||A27835 histidine transport protein hisP - Escherichia coli ... 121 1e-26
gb|AAA26354.1| (M96263) phnK [Sinorhizobium meliloti] 120 3e-26
gb|AAC27495.1| (AF077856) PotA [Actinobacillus actinomycetemcomi... 118 1e-25
pir||E83288 probable ATP-binding component of ABC transporter PA... 116 4e-25
pir||S76632 hypothetical protein - Synechocystis sp. (strain PCC... 114 1e-24
pir||D83194 polyamine transport protein PotA PA3607 [imported] -... 113 4e-24
pir||T34822 ABC-transporter ATP binding protein - Streptomyces c... 112 5e-24
pir||G69043 cobalt transport ATP-binding protein O - Methanobact... 111 1e-23
sp|P45247|LOLD_HAEIN LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 110 2e-23
sp|P47426|Y180_MYCGE HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 110 2e-23
sp|Q57293|AFUC_ACTPL FERRIC TRANSPORT ATP-BINDING PROTEIN AFUC >... 110 2e-23
gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Myc... 110 2e-23
sp|P45769|YHDZ_ECOLI HYPOTHETICAL AMINO-ACID ABC TRANSPORTER ATP... 108 1e-22
pir||H72272 sugar ABC transporter, ATP-binding protein - Thermot... 106 3e-22
sp|P55453|Y4FO_RHISN PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEI... 106 4e-22
sp|P75957|YCFV_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 106 5e-22
dbj|BAA35937.1| (D90747) Heterocyst maturation protein (devA) ho... 106 5e-22
pir||T36431 probable ABC-type transport system ATP-binding prote... 106 5e-22
sp|Q58418|PSTB_METJA PROBABLE PHOSPHATE TRANSPORT ATP-BINDING PR... 105 8e-22
gb|AAF22612.1|AF161268_1 (AF161268) ATP binding protein MalK [Th... 103 3e-21
pir||D83356 probable ATP-binding component of ABC transporter PA... 102 6e-21
sp|P45031|YRBF_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 102 7e-21
emb|CAA36923.1| (X52694) proV protein (AA 1-224) (941 is 1st bas... 101 9e-21
pir||C81179 spermidine/putrescine ABC transporter, ATP-binding p... 101 9e-21
emb|CAC05880.1| (AL391754) putative ABC transporter ATP-binding ... 101 9e-21
emb|CAB88472.1| (AL353816) phosphate ABC transport system ATP-bi... 101 1e-20
gb|AAG34709.1|AF320001_2 (AF320001) putative ATP binding protein... 101 1e-20
gb|AAK40988.1| ABC transporter, ATP binding protein. [Sulfolobus... 101 2e-20
emb|CAB57615.1| (Y18930) ABC transporter/ATP-binding protein [Su... 101 2e-20
pir||T47012 hypothetical protein [imported] - Yersinia pestis >g... 100 4e-20
pir||D81263 probable ABC transport system ATP-binding protein Cj... 100 4e-20
sp|P57031|LOLD_NEIMB LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 99 8e-20
pir||H82417 ABC transporter, ATP-binding protein VCA0782 [import... 98 1e-19
sp|P46342|YQGK_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 98 2e-19
sp|P57030|LOLD_NEIMA LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 97 2e-19
pir||G70022 iron(III) dicitrate transport permease homolog yusV ... 95 9e-19
gb|AAA62990.1| (U15182) phosphate transport protein pstB [Mycoba... 94 3e-18
emb|CAB95741.1| (AJ276960) putative ABC transporter [Staphylococ... 94 3e-18
dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacill... 94 3e-18
gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . ... 93 4e-18
sp|Q57554|Y089_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 93 4e-18
pir||F72485 probable high-affinity branched-chain amino acid tra... 93 5e-18
gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana] 93 5e-18
gb|AAC67220.1| (U78968) ATPase protein DppD [Streptococcus pyoge... 93 5e-18
pir||D70810 probable phosphate transport system ATP-binding prot... 92 6e-18
sp|P45393|YRBF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 90 2e-17
pir||D75308 sugar ABC transportor, ATP-binding protein - Deinoco... 90 2e-17
sp|P21629|BRAF_PSEAE HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRA... 89 5e-17
dbj|BAB03992.1| (AP001507) ABC transporter (ATP-binding protein)... 89 5e-17
sp|P30293|LIVG_SALTY HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRA... 89 7e-17
dbj|BAB06041.1| (AP001515) sugar ABC transporter (ATP-binding pr... 87 3e-16
gb|AAC15686.1| (AF045938) putative ABC transporter nucleotide bi... 87 4e-16
pir||B83354 probable ATP-binding component of ABC transporter PA... 86 5e-16
sp|P22730|LIVG_ECOLI HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRA... 86 6e-16
pir||C71307 probable ABC transporter, ATP-binding protein - syph... 86 6e-16
emb|CAC11370.1| (AL445063) gliding motility protein related [The... 85 1e-15
gb|AAD45713.1|AF160811_1 (AF160811) L-arabinose transport, ATP b... 84 2e-15
pir||F37074 leucine transport protein livG - Escherichia coli >g... 84 2e-15
gb|AAD44229.1|AF143772_35 (AF143772) DrrA [Mycobacterium avium] 84 2e-15
gb|AAD02044.1| (AF035964) ATP-binding protein A [Brucella abortus] 83 4e-15
sp|P72335|NODI_RHIS3 NODULATION ATP-BINDING PROTEIN I >gi|153162... 80 3e-14
sp|P36947|RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >... 79 6e-14
dbj|BAB04000.1| (AP001508) ABC transporter (ATP-binding protein)... 79 6e-14
pir||D70184 probable ribose/galactose ABC transporter mglA - Lym... 79 8e-14
dbj|BAB07698.1| (AP001520) ABC transporter (ATP-binding protein)... 79 8e-14
pir||G83402 ribose transport protein RbsA PA1947 [imported] - Ps... 77 2e-13
>pir||G75026 oligopeptide transport ATP-binding protein appd. PAB1196 -
Pyrococcus abyssi (strain Orsay)
>gi|5459167|emb|CAB50653.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPD. [Pyrococcus abyssi]
Length = 319
Score = 649 bits (1656), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ
Sbjct: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI
Sbjct: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE
Sbjct: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE
Sbjct: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
Query: 241 KVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKE 300
KVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKE
Sbjct: 241 KVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKE 300
Query: 301 EEPKMVEVDKDHYAACWLL 319
EEPKMVEVDKDHYAACWLL
Sbjct: 301 EEPKMVEVDKDHYAACWLL 319
>pir||G71211 probable oligopeptide transport ATP-binding protein appD -
Pyrococcus horikoshii >gi|3258403|dbj|BAA31086.1|
(AP000007) 322aa long hypothetical oligopeptide
transport ATP-binding protein appD [Pyrococcus
horikoshii]
Length = 322
Score = 634 bits (1617), Expect = 0.0
Identities = 305/319 (95%), Positives = 315/319 (98%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ
Sbjct: 4 MGKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 63
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
PPGRIV GSIKIDGREIVGLPEDVLR+EIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI
Sbjct: 64 PPGRIVGGSIKIDGREIVGLPEDVLRREIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 123
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
YH+GM REDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIA AL+LEPDIVIADE
Sbjct: 124 YHKGMDREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIAMALLLEPDIVIADE 183
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISD++A+MYAGK+VEIGPSE
Sbjct: 184 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDRVAVMYAGKLVEIGPSE 243
Query: 241 KVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKE 300
K+YYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNL+NPPSGCRFHPRCPYAMD+CKE
Sbjct: 244 KIYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLINPPSGCRFHPRCPYAMDKCKE 303
Query: 301 EEPKMVEVDKDHYAACWLL 319
EEPKMVEVDKDHYAACWLL
Sbjct: 304 EEPKMVEVDKDHYAACWLL 322
>pir||E72536 probable oligopeptide transport ATP-binding protein APE1578 -
Aeropyrum pernix (strain K1) >gi|5105265|dbj|BAA80578.1|
(AP000062) 324aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 324
Score = 402 bits (1023), Expect = e-111
Identities = 191/318 (60%), Positives = 243/318 (76%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MA+++L V++LK Y++T RG VKAVD V+F L +GEVLG+AGESG GKS++ ++++G+
Sbjct: 1 MAQELLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVP 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
PPGRIV G I IDG ++ + E LR+++RW+K+SM+FQGAMN L PVYTVG Q+ E L
Sbjct: 61 PPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEEVLQ 120
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
HRG+ R +A R + LE VGL I RYPHELSGG KQRVVIA AL LEPDIVIADE
Sbjct: 121 IHRGVGRHEARQRVYELLESVGLHRSIADRYPHELSGGQKQRVVIAMALALEPDIVIADE 180
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTTALDVVVQAQI+NL+K+L + LS+I ITHDLS++AE+++ + IMY GKI E GPS+
Sbjct: 181 PTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIAEYGPSD 240
Query: 241 KVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKE 300
V+ +P HPYTQ LL AIP+L +++L +IPGSPP+L NPP GCRFHPRCP A DRC
Sbjct: 241 AVFTKPQHPYTQALLKAIPKLRGPIDRLAYIPGSPPDLRNPPPGCRFHPRCPKAFDRCSR 300
Query: 301 EEPKMVEVDKDHYAACWL 318
EEP + V H +ACWL
Sbjct: 301 EEPPLFRVGDGHLSACWL 318
>gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (dppD-1) [Sulfolobus
solfataricus]
Length = 316
Score = 331 bits (840), Expect = 6e-90
Identities = 161/316 (50%), Positives = 225/316 (70%), Gaps = 4/316 (1%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
+ +LEV+NLK+Y++T RG VKAVD V L+KGE++GLAGESG GKS+IG+ +M + P
Sbjct: 4 RMLLEVRNLKVYFYTKRGIVKAVDGVNLYLDKGEIVGLAGESGSGKSTIGYAIMRLVPFP 63
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
G+I SG I G I+ L E+ RK RW+KI+M+FQG+M+ PV+ + Q+IE L H
Sbjct: 64 GKIESGEILFKGENILKLDEEAFRKNYRWKKIAMVFQGSMSGFTPVFKIKDQIIEVLRIH 123
Query: 123 RGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
D +R + ++V +DP++ +YPHELSGG KQR IA AL L P+++IADEPT
Sbjct: 124 GWNG--DYEERIKELFKMVNMDPQLAEKYPHELSGGQKQRAFIAMALALNPEVLIADEPT 181
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
TALDV+VQ I+NL+K+L+K+L LS+IFITHDL++L+EISD+ +YAGK++E GPSE +
Sbjct: 182 TALDVMVQEHILNLLKKLRKELNLSIIFITHDLALLSEISDRDYTLYAGKVMESGPSEVI 241
Query: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
+ +P HPYT L+ +I L +D+ ++ IPG+ P+L +PP GCRF+ RCP+A D C +EE
Sbjct: 242 FKKPRHPYTSLLIESIATLDKDI--IKGIPGAMPDLSSPPLGCRFNTRCPFARDICFKEE 299
Query: 303 PKMVEVDKDHYAACWL 318
PKM ACWL
Sbjct: 300 PKMKTFSDGDEVACWL 315
>pir||A72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981009|gb|AAD35583.1|AE001726_17 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 333
Score = 319 bits (808), Expect = 4e-86
Identities = 155/315 (49%), Positives = 227/315 (71%), Gaps = 3/315 (0%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+LEVKNL +++ G VKAV+DV+F L EVLG+ GE+G GKS ++M + +PPG+
Sbjct: 7 LLEVKNLSTWFYMEEGIVKAVNDVSFSLNSNEVLGIVGETGSGKSVTVKSIMRLIKPPGK 66
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
IVSG I G++I+ +PE + + IR ++I+MIFQ M +LNP+YT+G Q++E + YH G
Sbjct: 67 IVSGEIIYKGQDILKIPEKEMHR-IRGKEIAMIFQDPMMSLNPLYTIGDQLMETIRYHLG 125
Query: 125 MSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
+ A RA++ LELVG+ +PE + YP E SGGM+QRVVIA AL P ++IADEPT
Sbjct: 126 YDKRRAYLRAVEMLELVGIPEPEKRMNNYPFEFSGGMRQRVVIAIALSCNPSVLIADEPT 185
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
TALDV +QAQI+ LMK L+K+ +IFITHDL ++A ++D+I +MY G+ VEIG S+++
Sbjct: 186 TALDVTIQAQILELMKELQKEFKTGLIFITHDLGVIASMADRIMVMYGGRQVEIGTSDQI 245
Query: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
+Y P HPYT+ LL ++PR+ + +EKLE IPG PP +++ P C F PRCP ++RC +E
Sbjct: 246 FYSPRHPYTKMLLRSVPRVDKRLEKLESIPGQPPRMVDIPPVCPFLPRCPRRVERCLKEL 305
Query: 303 PKMVEVDKDHYAACW 317
P++ E++++HY C+
Sbjct: 306 PELSEIEENHYVRCF 320
>gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis]
Length = 347
Score = 315 bits (799), Expect = 4e-85
Identities = 161/320 (50%), Positives = 227/320 (70%), Gaps = 4/320 (1%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-PQP 61
K +LEVK+L++ + T G V+AV VTFDL+KGE L + GESG GKS LMG+ P P
Sbjct: 2 KTLLEVKDLQVSFDTHAGEVQAVRGVTFDLKKGETLAIVGESGSGKSVTSKALMGLIPNP 61
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
PGRI +G I +GR++ L E ++ ++R + I+MIFQ M +LNP T+G Q++E LI
Sbjct: 62 PGRIKNGEIVFEGRDLTKLTEKEMQ-QVRGKDIAMIFQDPMTSLNPTMTIGNQIMEGLIK 120
Query: 122 HRGMSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H+GMS+ DA A++ ++LVG+ +PE + +YPH+ SGGM+QRVVIA AL P ++IAD
Sbjct: 121 HQGMSKADARKVALELIDLVGIPNPEARLKQYPHQFSGGMRQRVVIAMALACNPKLLIAD 180
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV +QAQI+ LMK +++K ++IFITHDL ++A ++D++A+MYAGK+VEIG
Sbjct: 181 EPTTALDVTIQAQILELMKDIQQKTEAAIIFITHDLGVVANVADRVAVMYAGKVVEIGTV 240
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCK 299
++++Y P HPYT L+A++P L E+L IPG+PP+LL PP G F PR P A+
Sbjct: 241 DEIFYNPKHPYTWGLIASMPSLDGSEEELYAIPGTPPDLLKPPKGDAFAPRNPQALKIDF 300
Query: 300 EEEPKMVEVDKDHYAACWLL 319
E +P + +V HYAA WLL
Sbjct: 301 EMDPPLFKVSDTHYAATWLL 320
>pir||F75202 dipeptide abc transporter, dipeptide-binding protein PAB0094 -
Pyrococcus abyssi (strain Orsay)
>gi|5457578|emb|CAB49069.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 323
Score = 311 bits (789), Expect = 6e-84
Identities = 158/316 (50%), Positives = 221/316 (69%), Gaps = 4/316 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+++++NL + + T RG VKA+D V+FD+ KGE+L L GE+GCGKS +M + P
Sbjct: 6 LVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRL-LPRNA 64
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
IV G I GR ++ LPE +RK IR ++I+MIFQ + +LNPV+T+ QM E H+
Sbjct: 65 IVKGKIIYKGRNLLELPEREMRK-IRGKEIAMIFQDPLTSLNPVFTIEDQMGEMFKVHKL 123
Query: 125 MSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
LD +K L++V + DPE V YP ELSGGM+QRV+IA L +P ++IADEPT
Sbjct: 124 PVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSLLIADEPT 183
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
TALDV +QAQI+NLM L++K S++ ITH+ ++AE++D++ +MYAG++VEI P E++
Sbjct: 184 TALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVEIAPVEEI 243
Query: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
+ P HPYTQ LL A+PR H+ +LE IPG PNLLNPP GCRFHPRC A + C +E+
Sbjct: 244 FDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAKEMCSKEK 303
Query: 303 PKMVEVDKDHYAACWL 318
PK++EV+K+HY AC L
Sbjct: 304 PKLIEVEKEHYVACHL 319
>pir||E71130 probable oligopeptide transport ATP-binding protein APPD -
Pyrococcus horikoshii >gi|3257220|dbj|BAA29903.1|
(AP000003) 327aa long hypothetical oligopeptide
transport ATP-binding protein APPD [Pyrococcus
horikoshii]
Length = 327
Score = 309 bits (782), Expect = 4e-83
Identities = 145/313 (46%), Positives = 219/313 (69%), Gaps = 3/313 (0%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
ILE++ L + Y T G V A+ +V+F ++KG ++G+ GESG GKS++G T++ R
Sbjct: 4 ILEIEGLTVKYKTRYGTVHALSNVSFSVKKGSIVGIIGESGSGKSTLGHTILRTLPENAR 63
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY-HR 123
I SG I +G +++ + E+V R+E RW+KISMIFQ +MNA +PV+ + Q+++
Sbjct: 64 IESGKIMFEGSDLLEIDEEVFRREFRWKKISMIFQNSMNAFSPVHRIQDQLLDVARKCFP 123
Query: 124 GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTT 183
SR + L+ + L + +D ++ +YPHELSGG +QRV I AL+ +P+IVIADEPTT
Sbjct: 124 NKSRNELLEIIKEKLRIANIDESVLKKYPHELSGGQRQRVAIGMALLADPEIVIADEPTT 183
Query: 184 ALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVY 243
LDVV Q QI+N +K ++K LG++++ ITHD+S++A +S + ++YAGK++E G ++V+
Sbjct: 184 GLDVVTQYQILNRLKEIQKDLGITLLLITHDVSVVAALSTDVLVLYAGKVLEYGDIKRVF 243
Query: 244 YEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEP 303
HPYT LL + P + + EKL IPGSPP+L NPPSGC FHPRCPYA D C++EEP
Sbjct: 244 KNSHHPYTYLLLRSYPEMGK--EKLYEIPGSPPDLRNPPSGCVFHPRCPYATDLCRKEEP 301
Query: 304 KMVEVDKDHYAAC 316
K+VE+++ H++AC
Sbjct: 302 KLVEIEEGHFSAC 314
>pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981012|gb|AAD35586.1|AE001726_20 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 327
Score = 307 bits (779), Expect = 9e-83
Identities = 153/313 (48%), Positives = 223/313 (70%), Gaps = 4/313 (1%)
Query: 8 VKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVS 67
++NLK Y++T G VKAVD V+F++ +GE LG+ GESG GKS ++M + G+IV
Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVD 60
Query: 68 GSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSR 127
G I GR ++ L E+ +RK IR ++I+MIFQ M ALNPV+T+G Q++E +I H+ +S
Sbjct: 61 GKIIFKGRNLLELSENEMRK-IRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSE 119
Query: 128 EDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTAL 185
++A A+ L VG+ +PE V YPH+LSGGM+QR +IA AL P ++IADEPTTAL
Sbjct: 120 KEARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTAL 179
Query: 186 DVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYE 245
DV +QAQI+ LMK L+K+ G+++I ITHD+ ++AE+SDK+A+MYAGK+VE G + ++ E
Sbjct: 180 DVTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTE 239
Query: 246 PAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCP-YAMDRCKEEEPK 304
P HPYT LL +IPR+ + E+L+ IPG+ P+ LN P GC+FHPRC + +C EEP+
Sbjct: 240 PKHPYTYALLESIPRIDVEQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEPE 299
Query: 305 MVEVDKDHYAACW 317
+ ++D +H C+
Sbjct: 300 LEDLDGNHKVRCF 312
>pir||F71014 probable dipeptide transport ATP-binding protein dppD - Pyrococcus
horikoshii >gi|3257835|dbj|BAA30518.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppD [Pyrococcus horikoshii]
Length = 329
Score = 306 bits (775), Expect = 3e-82
Identities = 158/322 (49%), Positives = 227/322 (70%), Gaps = 9/322 (2%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
IL+V++L ++++T G VKA++ V+FD+ KGE L GE+GCGKS + + + PGR
Sbjct: 8 ILQVRDLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
Query: 65 IVSGSI---KIDGR--EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
IV G + + DG +++ L E+ +RK IR +I+ IFQ ++L+P+YTVGYQ+ E +
Sbjct: 68 IVGGQVLYYREDGSVVDLLKLSEEEIRK-IRGNEIAYIFQDPHSSLDPLYTVGYQIAEAM 126
Query: 120 IYHRGMSR-EDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIV 176
H + ++ + +A+ L+ V + DP+ V YPHELSGGMKQRVVI L P I+
Sbjct: 127 EVHGKIKNIKEGIKKAVDILKSVLIPDPQRRVNNYPHELSGGMKQRVVIGIGLSNNPRIL 186
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
IADEPTTALDV VQAQI++L+ +LK+K ++I ITH+L ++AE +D++A+MYAGKIVEI
Sbjct: 187 IADEPTTALDVTVQAQILDLINQLKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMD 296
G ++++ P HPYTQ LL A+P +EKLE IPG+ PNL+NPPSGCRFHPRCP AMD
Sbjct: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLINPPSGCRFHPRCPKAMD 306
Query: 297 RCKEEEPKMVEVDKDHYAACWL 318
CK++ P++ E++ H+ AC L
Sbjct: 307 ICKQKVPELKEIEPGHFVACHL 328
>gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocytogenes]
Length = 358
Score = 304 bits (771), Expect = 8e-82
Identities = 159/320 (49%), Positives = 220/320 (68%), Gaps = 4/320 (1%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-PQP 61
+K+LEVK+L + + T G VKA+ V FDL KGE L + GESG GKS ++M + P+
Sbjct: 2 EKLLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPEG 61
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
I SG I +G +I E ++K IR + I+MIFQ M +LNP T+G Q+ EPLI
Sbjct: 62 NSEIKSGQILFNGMDIAKAHEKQMQK-IRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIK 120
Query: 122 HRGMSREDALDRAMKYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H+ +S+ +A A++ L+LVG+ E + +YPH+ SGGM+QRVVIA +L P I+IAD
Sbjct: 121 HQKISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIAD 180
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV +QAQI++LMK L+KK+ S+IFITHDL ++A ++D++A+MY GKIVEIG
Sbjct: 181 EPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGTV 240
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCK 299
++++Y P HPYT L++++P L D E+L IPG+PP+LL+PP G F R YAM
Sbjct: 241 DEIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTPPDLLHPPKGDAFAARNKYAMQIDL 300
Query: 300 EEEPKMVEVDKDHYAACWLL 319
EEEP + +V HYAA WLL
Sbjct: 301 EEEPPLFKVSDTHYAATWLL 320
>pir||D72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981700|gb|AAD36228.1|AE001772_7 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 323
Score = 304 bits (770), Expect = 1e-81
Identities = 152/316 (48%), Positives = 220/316 (69%), Gaps = 4/316 (1%)
Query: 4 KILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPG 63
K+LE+KN+ + Y T V AV++V+F LEKGE LGL GESGCGKS++GF++M + P G
Sbjct: 2 KVLELKNVSVRYKTGEKTVNAVENVSFHLEKGETLGLVGESGCGKSTLGFSIMRL-LPKG 60
Query: 64 RIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR 123
+ GSIKI+G +I L ++ +R +IR K++MIFQ M +LNP+ + +E ++ HR
Sbjct: 61 TKIDGSIKIEGIDISSLSDEEMR-QIRGSKVAMIFQDPMTSLNPILRIEDHFVEMILTHR 119
Query: 124 G-MSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
+S+EDA + A K LE VG++ + YP + SGGM+QRV+IA +++L P ++IADEPT
Sbjct: 120 PELSKEDARELAAKALEDVGINRNRLKDYPFQFSGGMRQRVMIALSIVLNPAVLIADEPT 179
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
T+LDV+VQAQI+ L+++L K+ +MI ITHD+ ++AE +D+I +MYAG +VE+ E++
Sbjct: 180 TSLDVIVQAQIMELLEKLTKEHRTAMILITHDMGLVAEAADRIGVMYAGHLVELASKERI 239
Query: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
+ P HPYT LL +IP + ++L +IPGSPP+L NPP GCRF PRC AM C E+E
Sbjct: 240 FTNPLHPYTVGLLRSIPNTDVNDKELRYIPGSPPDLSNPPEGCRFAPRCEKAMKICWEKE 299
Query: 303 PKMVEVDKDHYAACWL 318
P E+D CWL
Sbjct: 300 PPEFEIDGTR-VKCWL 314
>pir||F72617 probable dipeptide transport system ATP-binding protein APE1399 -
Aeropyrum pernix (strain K1) >gi|5105082|dbj|BAA80396.1|
(AP000061) 333aa long hypothetical dipeptide transport
system ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 303 bits (767), Expect = 2e-81
Identities = 160/323 (49%), Positives = 220/323 (67%), Gaps = 9/323 (2%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
I+EV+NLK+Y++T G VKA++DV+F + +GE L GE+GCGKS L + PPGR
Sbjct: 9 IIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPPGR 68
Query: 65 IVSGSIKI---DGR--EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
IV G I GR +I+ L E LR+ IR ++I+ IFQ AL+P+YT+GYQ+ E +
Sbjct: 69 IVEGKIYYYPEPGRRVDIMSLDEKELRR-IRGEEIAYIFQDPSAALDPLYTIGYQVGETM 127
Query: 120 IYH-RGMSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIV 176
+ H R S + + RA+ L+ V + DPE V YPHELSGGMKQR VI +L P ++
Sbjct: 128 LAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKLL 187
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
IADEPTTALDV +QAQI++L+ +LK++ GL+++ ITH+L ++AE D++A+MYAG IVE
Sbjct: 188 IADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVEE 247
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMD 296
P ++++ P HPYT+ L+ A+P +E LE IPG+ PNL+ PP GCRFHPRCP A D
Sbjct: 248 APVDELFSNPLHPYTRALIRAVPNPLAKIENLEHIPGTVPNLITPPPGCRFHPRCPLAFD 307
Query: 297 RCKEEEPKMVEVDKDHYAACWLL 319
RC E+P + E H AACW L
Sbjct: 308 RCSREKPLLKEYSPGHKAACWAL 330
>emb|CAC05750.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 327
Score = 301 bits (762), Expect = 9e-81
Identities = 151/318 (47%), Positives = 222/318 (69%), Gaps = 7/318 (2%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ-PPG 63
+LEV++L + + T G KAV+ V++ ++ GE L + GESG GKS T+MG+ PPG
Sbjct: 2 LLEVRDLHVEFHTRDGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTIMGILDIPPG 61
Query: 64 RIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR 123
R+ +G I +GR+++ L E+ RK +R +++MIFQ A+++LNPV TVG Q+ E HR
Sbjct: 62 RVTAGEILFEGRDLLKLKEEERRK-VRGAEMAMIFQDALSSLNPVLTVGAQLAEMFTVHR 120
Query: 124 GMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
GMSR+DA +A++ ++ V + E V +YPH+ SGGM+QR++IA A+ LEP ++IADEP
Sbjct: 121 GMSRKDAHAKAVELMDRVRIPAAKERVRQYPHQFSGGMRQRIMIAMAMALEPKLIIADEP 180
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV VQAQ+++L+ L+++L + +I ITHDL ++A+++DKIA+MYAG+IVE P
Sbjct: 181 TTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD 240
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
+Y PAHPYT+ LL +IPRL + ++L I G PPNL P GC FHPRCP A D C+ +
Sbjct: 241 IYKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIPPGCAFHPRCPMAQDVCRTD 300
Query: 302 EPKMVEV---DKDHYAAC 316
P + +V D + +AC
Sbjct: 301 VPPLYDVTESDAERGSAC 318
>gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola]
Length = 330
Score = 300 bits (761), Expect = 1e-80
Identities = 156/322 (48%), Positives = 219/322 (67%), Gaps = 6/322 (1%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +LEVKNL Y+FT++G +KAV V F +E G+ LG+ GESG GKS F+++ + +
Sbjct: 1 MKNPLLEVKNLHTYFFTNKGTIKAVQGVDFTIEAGKTLGIVGESGSGKSITAFSILNLLE 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
PG+IV G I G +V L + +RK IR ISMIFQ M +LNPV+ +G Q+ EPLI
Sbjct: 61 YPGKIVQGEINFGGINLVNLGKKEIRK-IRGNDISMIFQEPMTSLNPVHRIGRQLSEPLI 119
Query: 121 YHRGMSREDALDRAMKYLELVGL-DPE-IVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
H+ MS+++A A+ L V + +PE +VY YP +LSGGM+QRV+IA AL +P ++IA
Sbjct: 120 LHQHMSKKEAWAAAIDLLREVKIPNPENVVYNYPFQLSGGMRQRVMIAMALACKPRLLIA 179
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPTTALDV +QAQI LM LKKK +++FITHDL +AE++D +A+MY G+IVE P
Sbjct: 180 DEPTTALDVTIQAQIFKLMNDLKKKHNTAIMFITHDLGAIAELADDVAVMYTGEIVERAP 239
Query: 239 SEKVY---YEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAM 295
+ ++ + +HPY + LL +IP L E+VE L I GS P+ L P GCRF RC YA
Sbjct: 240 VDVIFDRQTQFSHPYKEGLLESIPLLDEEVEYLAQIQGSVPHPLKLPKGCRFSTRCEYAT 299
Query: 296 DRCKEEEPKMVEVDKDHYAACW 317
++C+ E+P++VEV++ H C+
Sbjct: 300 EKCRNEKPELVEVEEGHLIRCF 321
>pir||C72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981605|gb|AAD36139.1|AE001766_5 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 299 bits (758), Expect = 3e-80
Identities = 150/321 (46%), Positives = 226/321 (69%), Gaps = 8/321 (2%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L++KNL+ Y+FT G VKAVD V+F++E+G LG+ GESGCGKS +++ + GR
Sbjct: 4 LLQIKNLRTYFFTDEGVVKAVDGVSFEIEEGRTLGVVGESGCGKSVTARSIIKLLSTAGR 63
Query: 65 IVSGSI--KIDGR--EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
IVSG I +DG+ ++V ++ +RK +R + I+MIFQ M A +PVYT+G Q+ E +I
Sbjct: 64 IVSGEILYNMDGQMVDLVKFSKEEIRK-VRGRHIAMIFQEPMAAFSPVYTIGDQITEGMI 122
Query: 121 YHRGMSREDALDRAMKYLELVGLD-PE-IVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
YH G+++++A +RA++ L VG+ PE ++ YP E SGGM+QR +IA AL P ++IA
Sbjct: 123 YHFGITKQEARERAVELLRRVGIPKPEKMIDSYPFEYSGGMRQRAMIAMALSCNPRLLIA 182
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPTTALDV +QAQ+++L+K L+++ ++++ ITH++ ++AE++D + +MY G++VE P
Sbjct: 183 DEPTTALDVTIQAQVLDLLKDLQQEYKMAIMMITHNMGVVAEMADHVVVMYLGRVVESAP 242
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR- 297
E+++Y P HPYT LL +IP + + VE+LE I G P+ N P GCRFHPRCPY M
Sbjct: 243 VEELFYNPKHPYTSLLLRSIPVVGKRVERLEVIEGDVPDPRNMPKGCRFHPRCPYMMKGI 302
Query: 298 CKEEEPKMVEVDKDHYAACWL 318
C E EP VEV +H +C+L
Sbjct: 303 CDEREPVEVEVGPEHRVSCFL 323
>pir||H75117 peptide abc transporter ATP-binding protein PAB1874 - Pyrococcus
abyssi (strain Orsay) >gi|5458168|emb|CAB49657.1|
(AJ248285) PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN
[Pyrococcus abyssi]
Length = 329
Score = 299 bits (757), Expect = 3e-80
Identities = 154/322 (47%), Positives = 222/322 (68%), Gaps = 9/322 (2%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
IL+V+NL ++++T G VKA++ V+FD+ KGE L GE+GCGKS + + + PGR
Sbjct: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
Query: 65 IVSGSI---KIDGR--EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
IV G + + DG +++ L E+ +RK IR +I+ IFQ +L+P+YTVGYQ+ E +
Sbjct: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRK-IRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
Query: 120 IYHRGM-SREDALDRAMKYLELVGL-DP-EIVYRYPHELSGGMKQRVVIATALILEPDIV 176
H + S ++ + +A+ L+ V + DP V YPHELSGGMKQRVVI + P I+
Sbjct: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
IADEPTTALDV +QAQI++L+ ++K+K ++I ITH+L ++AE +D++A+MYAGKIVEI
Sbjct: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMD 296
G ++++ P HPYTQ LL A+P +EKLE IPG+ PNL+ PP GCRFHPRCP M
Sbjct: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
Query: 297 RCKEEEPKMVEVDKDHYAACWL 318
CKE+ P++ E++ H+ AC L
Sbjct: 307 ICKEKVPELKEIEPGHFVACHL 328
>dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 347
Score = 298 bits (755), Expect = 6e-80
Identities = 155/321 (48%), Positives = 215/321 (66%), Gaps = 5/321 (1%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A+ ILEV++L+ +FT VKAVD VTF + KG+ LG+ GESG GKS +++ + Q
Sbjct: 9 AETILEVRDLRTSFFTEAFEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQE 68
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
PG++V G I G +V E +RK IR +ISMIFQ M +LNPVYTVG Q+ E
Sbjct: 69 PGKVVGGEINFKGENLVTKNEAYMRK-IRGNEISMIFQEPMTSLNPVYTVGQQISESFRI 127
Query: 122 HRGMSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H + +++AL R++ L+LVG+ PE V++YPHELSGGM+QRV+IA AL P+++IAD
Sbjct: 128 HEKLGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPELLIAD 187
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV +QAQI+ LMK L+ +LG+S+I ITHDL ++AE D +A+MY GK+VE
Sbjct: 188 EPTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVEYADV 247
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDV--EKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
+ ++ P HPYT LL ++PR D+ E+L I G+ P+ + P GCRF PRCP+A D
Sbjct: 248 KTLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPFASDI 307
Query: 298 CKEEEPKMVEVDKDHYAACWL 318
CKE P + + + CW+
Sbjct: 308 CKERLPDLETDENGNQIRCWV 328
>pir||H72215 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982327|gb|AAD36814.1|AE001813_6 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 324
Score = 298 bits (754), Expect = 8e-80
Identities = 152/318 (47%), Positives = 214/318 (66%), Gaps = 3/318 (0%)
Query: 4 KILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPG 63
++L V NLK+ + G VKAVD +++ L KGE LG+ GESG GKS +L+ + G
Sbjct: 3 ELLNVNNLKVEFHRVEGIVKAVDGISYKLNKGESLGIVGESGSGKSVSVLSLLRLINRNG 62
Query: 64 RIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR 123
RIV G G++++ L ++ LR IR + IS+IFQ M +LNP+ VG Q++EP+I+HR
Sbjct: 63 RIVDGEAIFLGKDLLKLNKEELRN-IRGKDISIIFQNPMTSLNPIIRVGIQVMEPIIWHR 121
Query: 124 GMSREDALDRAMKYLELVGL--DPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
M E+A +RA++ LE VG+ P+ YP + SGGM+QRV+IA AL P ++IADEP
Sbjct: 122 LMKNEEARERAIELLERVGIPESPKRFLNYPFQFSGGMRQRVMIAMALACHPKLLIADEP 181
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV +QAQI+ L++ LK++ G+S+IFITHDLS+ D+I MYAGKIVE P E+
Sbjct: 182 TTALDVTIQAQIMELLQELKEEYGMSVIFITHDLSVATNFCDRIITMYAGKIVEEAPVEE 241
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
+ P HPYT+ LL + + +KL IPG+PPN PSGC+FHPRC +AM+ C+ E
Sbjct: 242 ILKTPLHPYTKGLLNSTLEIGSRGKKLVPIPGNPPNPTKHPSGCKFHPRCSFAMEICQRE 301
Query: 302 EPKMVEVDKDHYAACWLL 319
EP +V + ++H AC L+
Sbjct: 302 EPPLVNISENHRVACHLI 319
>gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 326
Score = 297 bits (753), Expect = 1e-79
Identities = 149/323 (46%), Positives = 228/323 (70%), Gaps = 10/323 (3%)
Query: 5 ILEVKNLKMYY----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
++E KNLK YY + + ++AVD+V+ + GE+ G+AGESGCGKS++ TL+ +
Sbjct: 4 LVEGKNLKAYYVLEFWGKKRTIRAVDNVSLKIFSGEIYGIAGESGCGKSTLLKTLLANLE 63
Query: 61 PPGRIVSGSIK--IDGR--EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
PP R+ G + +D + +V L E+ R+ ++W+ IS I QG+M+ LNPV + +
Sbjct: 64 PPLRLFGGELNYWLDSKPVNVVSLKEEE-RRRLKWRFISYIPQGSMHVLNPVKRIRDTFM 122
Query: 117 EPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
E L H +E L+ A+++L+ +GL ++ +PH+LSGGM+QRV IA A +L+P I+
Sbjct: 123 EILKSHVRRQKETFLEMAIEHLKALGLPSRVLDMFPHQLSGGMRQRVTIALATLLKPRII 182
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
+ADEPTTALDVV Q +I L+K+++K+L +++ +THD+ I A+++ ++AIMYAGKIVE
Sbjct: 183 LADEPTTALDVVAQRAVIQLIKKIQKELKNTIVLVTHDMGIHAQVTTRMAIMYAGKIVEE 242
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMD 296
GP+ +++ EP HPYT+ L+ ++PR+ D + E IPGSPP+L++PPSGCRFHPRCP+A
Sbjct: 243 GPTLEIFKEPLHPYTRYLIQSLPRV-GDKQLREGIPGSPPSLVSPPSGCRFHPRCPHATQ 301
Query: 297 RCKEEEPKMVEVDKDHYAACWLL 319
RC+EEEP +EV+ H AAC+LL
Sbjct: 302 RCEEEEPVFLEVNPGHRAACFLL 324
>dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 293 bits (743), Expect = 1e-78
Identities = 139/316 (43%), Positives = 219/316 (68%), Gaps = 3/316 (0%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L V+ LK Y++T G V +V+ V+F+++ GE + + GESGCGKS ++MG+ + PG+
Sbjct: 6 LLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGK 65
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
IV G I+ +G+++ + E RK +R ++SMIFQ + +LNP++T+G Q+ E ++ H+
Sbjct: 66 IVGGDIRFNGQDLTTISEREYRK-LRGNELSMIFQEPLTSLNPLFTIGNQLGEVILQHQQ 124
Query: 125 MSREDALDRAMKYLELVGLD-PEIVYR-YPHELSGGMKQRVVIATALILEPDIVIADEPT 182
+++E+A + ++ L+ VG+ E VYR YPH+LSGGM+QRV+IA AL EP ++IADEPT
Sbjct: 125 VTKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIADEPT 184
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
TALDV +QAQI+ LM++L K+ +++ ITHDL ++AE++D + +MYAG++VE +
Sbjct: 185 TALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQADVFTL 244
Query: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
+ PAHPYTQ LLA+ P +H EKL+ I G+ P P GCRF PRC +A ++C +E
Sbjct: 245 FATPAHPYTQGLLASTPNIHASGEKLQSIEGTVPTHETMPKGCRFFPRCLHATEQCVHQE 304
Query: 303 PKMVEVDKDHYAACWL 318
P +++ + + CWL
Sbjct: 305 PPLMKTGRGQHVRCWL 320
>sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
>gi|2119773|pir||I40543 oligopeptide transport
ATP-binding protein appD - Bacillus subtilis
>gi|677943|gb|AAA62356.1| (U20909) AppD [Bacillus
subtilis] >gi|2633490|emb|CAB12993.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 328
Score = 293 bits (742), Expect = 2e-78
Identities = 145/317 (45%), Positives = 210/317 (65%), Gaps = 4/317 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPG- 63
+LEV NLK Y+F + P+ AVD V F + KGE + L GESG GKS ++MG+ Q G
Sbjct: 4 LLEVNNLKTYFFRKKEPIPAVDGVDFHISKGETVALVGESGSGKSITSLSIMGLVQSSGG 63
Query: 64 RIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR 123
+I+ GSIK++ +++ E+ K IR ++SMIFQ M +LNPV T+G Q+ E LIYH+
Sbjct: 64 KIMDGSIKLEDKDLTSFTENDYCK-IRGNEVSMIFQEPMTSLNPVLTIGEQITEVLIYHK 122
Query: 124 GMSREDALDRAMKYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
M +++A RA++ L++VG +I+ YPH LSGGM+QRV+IA AL P ++IADEP
Sbjct: 123 NMKKKEARQRAVELLQMVGFSRAEQIMKEYPHRLSGGMRQRVMIAIALSCNPKLLIADEP 182
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV +QAQ++ LMK L +K S++ ITHDL +++E +D++ +MY G++VE +
Sbjct: 183 TTALDVTIQAQVLELMKDLCQKFNTSILLITHDLGVVSEAADRVIVMYCGQVVENATVDD 242
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
++ EP HPYT+ LL +IP + +++KL I GS P N P GCRF PRCP AMD+C
Sbjct: 243 LFLEPLHPYTEGLLTSIPVIDGEIDKLNAIKGSVPTPDNLPPGCRFAPRCPKAMDKCWTN 302
Query: 302 EPKMVEVDKDHYAACWL 318
+P ++ C+L
Sbjct: 303 QPSLLTHKSGRTVRCFL 319
>pir||H75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459331|gb|AAF11130.1|AE002000_6 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 386
Score = 293 bits (742), Expect = 2e-78
Identities = 154/329 (46%), Positives = 218/329 (65%), Gaps = 18/329 (5%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-PQPPG 63
+L V NLK Y+ T G VK+VD VTF ++KGE L + GESG GKS T+M + P PPG
Sbjct: 33 LLAVNNLKTYFNTDDGVVKSVDGVTFHIKKGETLAVVGESGSGKSVTSLTVMRLIPMPPG 92
Query: 64 RIVSGSIKIDG-----REIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
+I G I G R +V + E +R+ IR ISMIFQ M +LNPVYTVG Q+ E
Sbjct: 93 QIAGGEILFTGKDGVQRNLVNVSEAEMRR-IRGNDISMIFQEPMTSLNPVYTVGDQIAEA 151
Query: 119 LIYHRGMSREDALDRAMKYLELVGLD-PEI-VYRYPHELSGGMKQRVVIATALILEPDIV 176
++ H+G +R++A+D A L VG+ PE V YPH++SGGM+QRV+IA AL +P ++
Sbjct: 152 VVLHQGKTRKEAMDVATDMLRFVGIPAPEKRVNEYPHQMSGGMRQRVMIAMALSCKPALL 211
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
IADEPTTALDV +QAQI++LM+ L++++G+S++FITH+L ++AE++D++ +MY G++VE
Sbjct: 212 IADEPTTALDVTIQAQILDLMRNLQREVGMSILFITHNLGVVAEMADRVVVMYGGRVVEE 271
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHED---------VEKLEFIPGSPPNLLNPPSGCRF 287
G +++ P HPYT LL +IPR ED ++LE IPG+ PN LN P GC F
Sbjct: 272 GDVIEIFKAPRHPYTMGLLNSIPRPSEDEHAHVPGQPKKRLEAIPGNVPNPLNLPPGCTF 331
Query: 288 HPRCPYAMDRCKEEEPKMVEVDKDHYAAC 316
PRC +A+ +C + P + + H A C
Sbjct: 332 EPRCKFAVPQCSQAVPALEDTGGGHMARC 360
>pir||C75142 oligopeptide transport ATP-binding protein appf PAB0630 -
Pyrococcus abyssi (strain Orsay)
>gi|5458363|emb|CAB49852.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 293 bits (741), Expect = 3e-78
Identities = 150/318 (47%), Positives = 220/318 (69%), Gaps = 5/318 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L+V+NL++YY T G V+AVD V+F++ +GEV G+AGESGCGKS++ +L+ + +PP
Sbjct: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
GS GR+++ LP D LRK I++ ++S+I Q AMNALNP + + + H
Sbjct: 62 YKGGSAIFKGRDLMSLPRDELRK-IQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
Query: 125 MSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTA 184
R + + + L +V L P + YP ELSGGM+QR + + +L PD++IADE T+A
Sbjct: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
Query: 185 LDVVVQAQIINLMKR-LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVY 243
LDV Q +I L+ +++ + S+IF+THDL++L +I+D++ +MYAGK+VEIGP E+V
Sbjct: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
Query: 244 YEPAHPYTQKLLAAIPRL--HEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
PAHPYTQ LL ++PR+ H E+L IPG P +LLNPP GCRF+ RCP+AM+ C++
Sbjct: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCPFAMEDCRDV 300
Query: 302 EPKMVEVDKDHYAACWLL 319
EPK+V+V +DHYAAC LL
Sbjct: 301 EPKLVKVGRDHYAACHLL 318
>pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd) PAB1346 -
Pyrococcus abyssi (strain Orsay)
>gi|5458956|emb|CAB50443.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppD) [Pyrococcus
abyssi]
Length = 322
Score = 293 bits (741), Expect = 3e-78
Identities = 151/318 (47%), Positives = 219/318 (68%), Gaps = 5/318 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L+V+NL++YY T G V+AVD V+F++ +GEV G+AGESGCGKS++ +L+ + +PP
Sbjct: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSLI-LRKPPME 61
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
GS GR+++ LP D LRK I++ ++S+I Q AMNALNP + + + H
Sbjct: 62 YKGGSAIFKGRDLMSLPRDELRK-IQYSELSIIPQYAMNALNPTKRIKDIVWDLAREHGY 120
Query: 125 MSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTA 184
R + + + L +V L P + YP ELSGGM+QR + + +L PD++IADE T+A
Sbjct: 121 ADRREVEELLRERLSMVKLSPRVADMYPVELSGGMRQRATMVVSTLLNPDLLIADEITSA 180
Query: 185 LDVVVQAQIINLMKR-LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVY 243
LDV Q +I L+ +++ + S+IF+THDL++L +I+D++ +MYAGK+VEIGP E+V
Sbjct: 181 LDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVVEIGPMEEVL 240
Query: 244 YEPAHPYTQKLLAAIPRL--HEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
PAHPYTQ LL ++PR+ H E+L IPG P +LLNPP GCRF+ RCP+AM+ C E
Sbjct: 241 ENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPRGCRFYTRCPFAMEHCPEV 300
Query: 302 EPKMVEVDKDHYAACWLL 319
EPK+V+V K+HYAAC LL
Sbjct: 301 EPKLVKVGKEHYAACHLL 318
>gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 358
Score = 292 bits (740), Expect = 3e-78
Identities = 157/320 (49%), Positives = 214/320 (66%), Gaps = 5/320 (1%)
Query: 4 KILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-PQPP 62
++LEVK+L + + T G V+A+ V F L+KGE L + GESG GKS +M + P PP
Sbjct: 6 RLLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPP 65
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
G G I +G+++V L E ++ +R ++I MIFQ M +LNP VG Q+ E L H
Sbjct: 66 GYFKRGEILFEGKDLVPLSEKEMQN-VRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKH 124
Query: 123 RGMSREDALDRAMKYLELVGLD-PEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+S+E A RA++ LELVG+ PE V ++PHE SGGM+QRVVIA AL P ++IADE
Sbjct: 125 EKISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADE 184
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTTALDV +QAQI+ LMK L+KK+ S+IFITHDL ++A ++D++A+MYAG+IVE G +
Sbjct: 185 PTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVD 244
Query: 241 KVYYEPAHPYTQKLLAAIPRLHED-VEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCK 299
+++Y+P HPYT LLA++P L E+L IPG+PP+L NPP G F R YAM
Sbjct: 245 EIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDF 304
Query: 300 EEEPKMVEVDKDHYAACWLL 319
E+EP M +V HY WLL
Sbjct: 305 EQEPPMFKVSDTHYVKSWLL 324
>pir||D38447 sporulation initiation protein spo0KD - Bacillus subtilis
>gi|580898|emb|CAA39790.1| (X56347) OppD [Bacillus
subtilis]
Length = 336
Score = 292 bits (740), Expect = 3e-78
Identities = 157/320 (49%), Positives = 214/320 (66%), Gaps = 5/320 (1%)
Query: 4 KILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-PQPP 62
++LEVK+L + + T G V+A+ V F L+KGE L + GESG GKS +M + P PP
Sbjct: 6 RLLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPP 65
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
G G I +G+++V L E ++ +R ++I MIFQ M +LNP VG Q+ E L H
Sbjct: 66 GYFKRGEILFEGKDLVPLSEKEMQN-VRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKH 124
Query: 123 RGMSREDALDRAMKYLELVGLD-PEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+S+E A RA++ LELVG+ PE V ++PHE SGGM+QRVVIA AL P ++IADE
Sbjct: 125 EKISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADE 184
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTTALDV +QAQI+ LMK L+KK+ S+IFITHDL ++A ++D++A+MYAG+IVE G +
Sbjct: 185 PTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVD 244
Query: 241 KVYYEPAHPYTQKLLAAIPRLHED-VEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCK 299
+++Y+P HPYT LLA++P L E+L IPG+PP+L NPP G F R YAM
Sbjct: 245 EIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDF 304
Query: 300 EEEPKMVEVDKDHYAACWLL 319
E+EP M +V HY WLL
Sbjct: 305 EQEPPMFKVSDTHYVKSWLL 324
>sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442529|pir||B69669 oligopeptide transport
ATP-binding protein oppD - Bacillus subtilis
>gi|2633500|emb|CAB13003.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 358
Score = 292 bits (740), Expect = 3e-78
Identities = 157/320 (49%), Positives = 214/320 (66%), Gaps = 5/320 (1%)
Query: 4 KILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-PQPP 62
++LEVK+L + + T G V+A+ V F L+KGE L + GESG GKS +M + P PP
Sbjct: 6 RLLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPP 65
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
G G I +G+++V L E ++ +R ++I MIFQ M +LNP VG Q+ E L H
Sbjct: 66 GYFKRGEILFEGKDLVPLSEKEMQN-VRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKH 124
Query: 123 RGMSREDALDRAMKYLELVGLD-PEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+S+E A RA++ LELVG+ PE V ++PHE SGGM+QRVVIA AL P ++IADE
Sbjct: 125 EKISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADE 184
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTTALDV +QAQI+ LMK L+KK+ S+IFITHDL ++A ++D++A+MYAG+IVE G +
Sbjct: 185 PTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVD 244
Query: 241 KVYYEPAHPYTQKLLAAIPRLHED-VEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCK 299
+++Y+P HPYT LLA++P L E+L IPG+PP+L NPP G F R YAM
Sbjct: 245 EIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDF 304
Query: 300 EEEPKMVEVDKDHYAACWLL 319
E+EP M +V HY WLL
Sbjct: 305 EQEPPMFKVSDTHYVKSWLL 324
>pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf) PAB1875 -
Pyrococcus abyssi (strain Orsay)
>gi|5458167|emb|CAB49656.1| (AJ248285) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 326
Score = 292 bits (739), Expect = 4e-78
Identities = 146/331 (44%), Positives = 221/331 (66%), Gaps = 22/331 (6%)
Query: 1 MAKKILEVKNLKMYY-----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
M + +L+V+NLK Y+ F + G VKAVD V+F++++GE GL GESGCGK++ G T+
Sbjct: 1 MTETVLKVENLKKYFPIRGLFRTIGWVKAVDGVSFEIKRGETFGLVGESGCGKTTTGRTI 60
Query: 56 MGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRW--QKISMIFQGAMNALNPVYTVGY 113
+ + +P G I G+++ L + E++W +K ++FQ ++L+P TV
Sbjct: 61 LRLIEP----TDGKIIFMGKDVTKLKGE----ELKWFRRKAQIMFQDPYSSLDPRQTVFQ 112
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
++EP+ +H G+ +D + ++ LE VGL+ +YRYPHE SGG +QR+ +A L L+P
Sbjct: 113 IIMEPVKFH-GIQVDDPEEFVIRLLESVGLNEMHLYRYPHEFSGGQRQRIALARLLALKP 171
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
+ ++ DEPT+ALDV VQA I+N +K L++K G + +FI+HDL ++ +SD+I +MY GK+
Sbjct: 172 EFIVLDEPTSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKL 231
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDV-----EKLEFIPGSPPNLLNPPSGCRFH 288
VE+GP+++++ P HPYTQ L +AIP D+ +K + G PP+ +NPP GCRFH
Sbjct: 232 VEVGPADRIFENPLHPYTQMLFSAIPIPDPDLAREMKKKRMKVTGEPPSPINPPKGCRFH 291
Query: 289 PRCPYA-MDRCKEEEPKMVEVDKDHYAACWL 318
PRCPYA C +EEP MVEV+KDHY ACWL
Sbjct: 292 PRCPYAKAGLCDKEEPPMVEVEKDHYVACWL 322
>dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli] >gi|1805527|dbj|BAA16041.1| (D90852)
Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 337
Score = 291 bits (738), Expect = 6e-78
Identities = 154/319 (48%), Positives = 210/319 (65%), Gaps = 7/319 (2%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L VK+L++ + T G V AV+D+ F L GE LG+ GESG GKS F LMG+
Sbjct: 16 ADALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA 75
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
GRI GS +GREI+ LPE L K +R ++ISMIFQ M +LNP VG Q++E L+
Sbjct: 76 NGRI-GGSATFNGREILNLPEHELNK-LRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 133
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIA 178
H+ MS+ +A + +++ L+ V + PE R YPHE SGGM+QRV+IA AL+ P ++IA
Sbjct: 134 HKNMSKAEAFEESVRMLDAVKM-PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 192
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPTTALDV VQAQI+ L+ LK++ ++I ITHDL ++A I DK+ +MYAG+ +E G
Sbjct: 193 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGN 252
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
+ V+Y+P HPY+ LL A+PRL + E + IPG+PPNLL P GC F PRCP+AM+ C
Sbjct: 253 ARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC 312
Query: 299 KEEEPKMVEVDKDHYAACW 317
P + E AC+
Sbjct: 313 -SSAPPLEEFTPGRLRACF 330
>sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442530|pir||A64872 oligopeptide transport
ATP-binding protein oppD - Escherichia coli
>gi|1787499|gb|AAC74328.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 337
Score = 291 bits (738), Expect = 6e-78
Identities = 154/319 (48%), Positives = 210/319 (65%), Gaps = 7/319 (2%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L VK+L++ + T G V AV+D+ F L GE LG+ GESG GKS F LMG+
Sbjct: 16 ADALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAA 75
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
GRI GS +GREI+ LPE L K +R ++ISMIFQ M +LNP VG Q++E L+
Sbjct: 76 NGRI-GGSATFNGREILNLPEHELNK-LRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 133
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIA 178
H+ MS+ +A + +++ L+ V + PE R YPHE SGGM+QRV+IA AL+ P ++IA
Sbjct: 134 HKNMSKAEAFEESVRMLDAVKM-PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 192
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPTTALDV VQAQI+ L+ LK++ ++I ITHDL ++A I DK+ +MYAG+ +E G
Sbjct: 193 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGN 252
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
+ V+Y+P HPY+ LL A+PRL + E + IPG+PPNLL P GC F PRCP+AM+ C
Sbjct: 253 ARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC 312
Query: 299 KEEEPKMVEVDKDHYAACW 317
P + E AC+
Sbjct: 313 -SSAPPLEEFTPGRLRACF 330
>sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|47805|emb|CAA29042.1| (X05491) Opp D (AA1-335)
[Salmonella typhimurium]
Length = 335
Score = 290 bits (735), Expect = 1e-77
Identities = 150/305 (49%), Positives = 205/305 (67%), Gaps = 6/305 (1%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +LEV +L++ + T G V AV+D+ F L GE LG+ GESG GKS F LMG+
Sbjct: 14 ANVLLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALMGLLAT 73
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
GRI GS +GREI+ LPE L +R ++ISMIFQ M +LNP VG Q++E L+
Sbjct: 74 NGRI-GGSATFNGREILNLPERELNT-LRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 131
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIA 178
H+GMS+ +A + +++ L+ V + PE R YPHE SGGM+QRV+IA AL+ P ++IA
Sbjct: 132 HKGMSKAEAFEESVRMLDAVKM-PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 190
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPTTALDV VQAQI+ L+ LK++ ++I ITHDL ++A I DK+ +MYAG+ +E G
Sbjct: 191 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGK 250
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
+ V+Y+P HPY+ LL A+PRL + ++ IPG+PPNLL P GC F PRCP+AM+ C
Sbjct: 251 ARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC 310
Query: 299 KEEEP 303
P
Sbjct: 311 NNAPP 315
>pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655050|gb|AAF93783.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 327
Score = 289 bits (732), Expect = 3e-77
Identities = 141/318 (44%), Positives = 210/318 (65%), Gaps = 1/318 (0%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M ++ ++NL + Y T G V+A ++V+FDL GEV GLAGESGCGKS++ F+LM + +
Sbjct: 1 MTTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHK 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
PP I G + +G +I+ ++ ++ RW+++SM+FQ AMNALNPV T+ Q + +
Sbjct: 61 PPAFITGGEVIFNGEDILKYSDERMQA-FRWKEMSMVFQSAMNALNPVLTMEEQFCDVIT 119
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
H M+RE A RA LE+V + P + YPH+ SGGM+QR+VIA AL L P ++I DE
Sbjct: 120 RHTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQRLVIAIALALNPKMIIMDE 179
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTTALDVVVQ +I+ + LK++ G S++FITHDLS++ E SD+I IMY+G+++E+ PS+
Sbjct: 180 PTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSK 239
Query: 241 KVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKE 300
++ P HPYT+ L ++ P L KL IPG+P NLL+ P GCRF RC + C +
Sbjct: 240 QILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTK 299
Query: 301 EEPKMVEVDKDHYAACWL 318
+ +++ ++ C L
Sbjct: 300 VPTVLRQIEHGRFSNCHL 317
>pir||G71014 probable dipeptide transport ATP-binding protein dppF - Pyrococcus
horikoshii >gi|3257836|dbj|BAA30519.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppF [Pyrococcus horikoshii]
Length = 329
Score = 289 bits (731), Expect = 4e-77
Identities = 147/331 (44%), Positives = 219/331 (65%), Gaps = 22/331 (6%)
Query: 1 MAKKILEVKNLKMYY-----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
M + +L+V+NLK Y+ + G VKAVD V+F++ KGE GL GESGCGK++ G T+
Sbjct: 4 MPEPVLKVENLKKYFPVRGLLRTVGWVKAVDGVSFEIYKGETFGLVGESGCGKTTTGRTI 63
Query: 56 MGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRW--QKISMIFQGAMNALNPVYTVGY 113
+ + +P G I G+++ L + E++W +K ++FQ ++L+P TV
Sbjct: 64 LRLIEP----TDGRIIFMGKDVTKLKGN----ELKWFRRKAQIMFQDPYSSLDPRQTVFQ 115
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
++EP+ +H G+ +D + +K LE VGL+ +YRYPHE SGG +QR+ +A L L+P
Sbjct: 116 IIMEPVRFH-GIQVDDPEEFVIKLLESVGLNEMHLYRYPHEFSGGQRQRIALARLLALKP 174
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
+ ++ DEPT+ALDV VQA I+N +K L++K G + +FI+HDL ++ +SD+I +MY GK+
Sbjct: 175 EFIVLDEPTSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLGKL 234
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDV-----EKLEFIPGSPPNLLNPPSGCRFH 288
VE+GP++KV+ P HPYTQ L +AIP D+ +K + G PP+ +NPP GCRFH
Sbjct: 235 VEVGPADKVFENPLHPYTQMLFSAIPIPDPDIAREMKKKRMKVTGEPPSPVNPPKGCRFH 294
Query: 289 PRCPYA-MDRCKEEEPKMVEVDKDHYAACWL 318
PRCPYA C ++EP +VEV+KDHY ACWL
Sbjct: 295 PRCPYAKAGLCDKKEPPLVEVEKDHYVACWL 325
>pir||T34759 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402246|emb|CAA20182.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 365
Score = 289 bits (731), Expect = 4e-77
Identities = 151/324 (46%), Positives = 223/324 (68%), Gaps = 15/324 (4%)
Query: 6 LEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRI 65
LEV++LK+++ T G VK+VD ++F LEKG+ LG+ GESG GKS +MG+ G+
Sbjct: 25 LEVRDLKVHFPTDDGLVKSVDGLSFQLEKGKTLGIVGESGSGKSVTSLGIMGL-HTAGQY 83
Query: 66 ------VSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
+SG I +DG E++ D +RK +R ++++MIFQ ++AL+P YT+G Q++E
Sbjct: 84 GKRKARISGEIWLDGTELLSADPDHVRK-LRGREMAMIFQDPLSALHPYYTIGQQIVEAY 142
Query: 120 IYHRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
H + ++ A RA++ L+ VG+ + V YPHE SGGM+QR +IA +L+ P+++I
Sbjct: 143 RIHHKVDKKTAKRRAVEMLDRVGIPQPDKRVDSYPHEFSGGMRQRAMIAMSLVNNPELLI 202
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEPTTALDV VQAQI++L++ L+K+ G ++I ITHDL ++AE++D + +MY G+ VE G
Sbjct: 203 ADEPTTALDVTVQAQILDLIRDLQKEFGSAVIVITHDLGVVAELADDLLVMYGGRCVERG 262
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHED-VEKLEFIPGSPPNLLNPPSGCRFHPRCPYA-- 294
P+EKV+YEP HPYT LL ++PRL D E+L + GSPP+L+N PSGC F+PRCPYA
Sbjct: 263 PAEKVFYEPRHPYTWGLLGSMPRLDRDQQERLIPVKGSPPSLINLPSGCAFNPRCPYADV 322
Query: 295 --MDRCKEEEPKMVEVDKDHYAAC 316
D + P++ EV H+AAC
Sbjct: 323 PKDDVTRTVRPELTEVGSKHWAAC 346
>gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD)
[Archaeoglobus fulgidus] >gi|7445611|pir||A69471
dipeptide ABC transporter, ATP-binding protein (dppD)
homolog - Archaeoglobus fulgidus
>gi|2648781|gb|AAB89480.1| (AE000980) dipeptide ABC
transporter, ATP-binding protein (dppD) [Archaeoglobus
fulgidus]
Length = 313
Score = 288 bits (730), Expect = 5e-77
Identities = 145/314 (46%), Positives = 219/314 (69%), Gaps = 5/314 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L+++NL + T RG V+AVD+V+ +EKGE + + GESGCGKS++ ++M + PG
Sbjct: 3 LLDIENLTTIFRTRRGVVRAVDNVSMSVEKGEFISIVGESGCGKSTLAHSVMRLIDYPGE 62
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
I G I DG +++ L ++ +R EIR KI M+FQ M +L+P+ +G Q+ E ++ H
Sbjct: 63 ISGGKIIFDGVDLLSLGDEEMR-EIRGSKIGMVFQDPMTSLDPLEKIGDQISETIMEHMD 121
Query: 125 MSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTA 184
+++++A A + LE VGL PE V YPH+LSGG +QRV+IA A+ L P ++IADEPTTA
Sbjct: 122 VTKKEAWQMAREMLEKVGLQPERVDSYPHQLSGGQRQRVMIAMAISLNPKLLIADEPTTA 181
Query: 185 LDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYY 244
LDV+VQ +I++L++ +K++ G +++ ITHD ++ AE SD+IA+MYAG +VE+G +EK+
Sbjct: 182 LDVIVQEKIMDLLEDMKRE-GRAVMLITHDFALAAERSDRIAVMYAGWLVELGKAEKLTN 240
Query: 245 EPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPK 304
EP HPYT+ L+ ++P + D E ++ +PG PP+L+NPP GCRF PRC A RC +E P+
Sbjct: 241 EPLHPYTKGLIQSVPDVWMDKE-IKPLPGFPPDLINPPEGCRFRPRCSEASKRCMKEPPE 299
Query: 305 MVEVDKDHYAACWL 318
EVD CWL
Sbjct: 300 F-EVD-GRVVKCWL 311
>pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC1094 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655563|gb|AAF94253.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 324
Score = 288 bits (730), Expect = 5e-77
Identities = 148/316 (46%), Positives = 210/316 (65%), Gaps = 6/316 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L+VK+L++ + T G V AV+D+ F L++GE LG+ GESG GKS F +MG+ G+
Sbjct: 4 LLDVKDLRVEFSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKNGK 63
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
I +GS K +G+EI+ LPE L K +R ++I+MIFQ M +LNP V Q++E L+ H+G
Sbjct: 64 I-TGSAKFEGKEILNLPERELNK-VRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKG 121
Query: 125 MSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIADEP 181
M + +A + +++ LE V + PE R YPHE SGGM+QRV+IA AL+ P ++IADEP
Sbjct: 122 MGKAEAFEESVRMLEAVKI-PEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 180
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV VQAQI+ L+ LK++ ++I ITHDL ++A DK+ +MYAG+ +E G
Sbjct: 181 TTALDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVND 240
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
++Y P+HPY + LL+AIPRL + E L IPG+PPNLL P GC + RC DRCK E
Sbjct: 241 IFYNPSHPYAEGLLSAIPRLDTEGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDRCKRE 300
Query: 302 EPKMVEVDKDHYAACW 317
P ++ AC+
Sbjct: 301 APILLPFGNSRQRACF 316
>pir||A72452 probable peptide transport ATP-binding protein APE2261 - Aeropyrum
pernix (strain K1) >gi|5105962|dbj|BAA81273.1|
(AP000064) 320aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 320
Score = 287 bits (728), Expect = 8e-77
Identities = 148/313 (47%), Positives = 211/313 (67%), Gaps = 3/313 (0%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L++++LK++Y+T G V+AVD V+ + KGE + + GESG GKS++ ++ + PPGR
Sbjct: 7 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 66
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR- 123
IV G I G +++ L + LR+ R ++I M+FQ L+P TVG Q+ E L+ H
Sbjct: 67 IVGGRILYSGVDLLSLAGEELRR-YRGREIGMVFQDPTAYLDPYRTVGSQIAESLLEHGL 125
Query: 124 GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTT 183
S +A A LELVG+ + YPH+LSGG +QRV IA A+ LEP I+IADEPTT
Sbjct: 126 ASSGSEAESMAGDALELVGIPRDRASVYPHQLSGGQRQRVAIAAAVALEPKILIADEPTT 185
Query: 184 ALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVY 243
ALDVVVQA+I++LMK+L+++ GL+++ +THD+ + AE SD+IA+MYAG++VEIGP+E V
Sbjct: 186 ALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIGPAEDVV 245
Query: 244 YEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEP 303
P HPYT+ L+ ++P ED E ++ IPGSPP+L NPP GCRFHPRCP C P
Sbjct: 246 SNPIHPYTEMLIKSVPDPWEDRE-VKPIPGSPPDLRNPPPGCRFHPRCPLRQPLCTNTRP 304
Query: 304 KMVEVDKDHYAAC 316
+ VD +C
Sbjct: 305 SLRMVDGGRGHSC 317
>sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD >gi|98274|pir||S16650
dipeptide transport ATP-binding protein dppD - Bacillus
subtilis >gi|48807|emb|CAA40005.1| (X56678) dciAD
[Bacillus subtilis] >gi|2632016|emb|CAA05575.1|
(AJ002571) DppD [Bacillus subtilis]
>gi|2633649|emb|CAB13152.1| (Z99110) dipeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 335
Score = 287 bits (727), Expect = 1e-76
Identities = 149/319 (46%), Positives = 208/319 (64%), Gaps = 4/319 (1%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP- 61
+K+L V+NL + + T G V+AV V+FDL KGE + GESGCGKS ++MG+ P
Sbjct: 2 EKVLSVQNLHVSFTTYGGTVQAVRGVSFDLYKGETFAIVGESGCGKSVTSQSIMGLLPPY 61
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
++ G I +++ L + +R IR ISMIFQ M ALNP TVG Q+ E L+
Sbjct: 62 SAKVTDGRILFKNKDLCRLSDKEMRG-IRGADISMIFQDPMTALNPTLTVGDQLGEALLR 120
Query: 122 HRGMSREDALDRAMKYLELVGL-DP-EIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H+ MS++ A + L LVG+ DP E + +YPH+ SGGM+QR+VIA ALI EPDI+IAD
Sbjct: 121 HKKMSKKAARKEVLSMLSLVGIPDPGERLKQYPHQFSGGMRQRIVIAMALICEPDILIAD 180
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV +QAQI+ L K +++K +S+I ITHDL ++A+++D++A+MYAGK+ EIG
Sbjct: 181 EPTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGVVAQVADRVAVMYAGKMAEIGTR 240
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCK 299
+ ++Y+P HPYT+ LL ++PRL + +L I G+PP+L +PP GC F RCP M C
Sbjct: 241 KDIFYQPQHPYTKGLLGSVPRLDLNGAELTPIDGTPPDLFSPPPGCPFAARCPNRMVVCD 300
Query: 300 EEEPKMVEVDKDHYAACWL 318
P H CWL
Sbjct: 301 RVYPGQTIRSDSHTVNCWL 319
>pir||D71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256910|dbj|BAA29593.1|
(AP000002) 324aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 324
Score = 287 bits (727), Expect = 1e-76
Identities = 151/319 (47%), Positives = 220/319 (68%), Gaps = 7/319 (2%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L V+NL++YY T RG VKAVD V+F+++KGEV G+AGESGCGKS++ +L+ + +PP
Sbjct: 3 LLRVRNLRIYYSTPRGFVKAVDGVSFEVKKGEVFGIAGESGCGKSTLVHSLI-LRKPPMT 61
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
G G++++ L + RK I+++++S+I Q AMNALNP + ++ L G
Sbjct: 62 HKGGKAIFKGKDLMKLSREEARK-IQYKELSIIPQYAMNALNPTKKIK-DIVWDLAREHG 119
Query: 125 MSREDALDRAMKY-LELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTT 183
M + +++ +K L +V L P++ YP ELSGGM+QR + + +L PD++IADE T+
Sbjct: 120 MQDKKEVEKLLKERLSMVKLSPKVAEMYPVELSGGMRQRATMVVSTLLNPDLLIADEVTS 179
Query: 184 ALDVVVQAQIINLMKR-LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
ALDV Q +I L+ +++ + S+IF+THDL++L +I+D++ IMYAGK+VEIG E+V
Sbjct: 180 ALDVTTQRVVIELLHHFMEEGIVKSIIFVTHDLALLRQIADRVMIMYAGKVVEIGSMEEV 239
Query: 243 YYEPAHPYTQKLLAAIPRL--HEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKE 300
PAHPYTQ LL ++PR+ H E+L IPG P +LLNPP GCRF+ RCPYAM C+E
Sbjct: 240 LESPAHPYTQLLLNSLPRMGVHYKRERLRGIPGYPISLLNPPEGCRFYTRCPYAMQVCRE 299
Query: 301 EEPKMVEVDKDHYAACWLL 319
EP++VEV HYAAC LL
Sbjct: 300 VEPELVEVSPGHYAACHLL 318
>pir||QREBOT oligopeptide transport protein oppD - Salmonella typhimurium
Length = 335
Score = 286 bits (723), Expect = 3e-76
Identities = 149/305 (48%), Positives = 203/305 (65%), Gaps = 6/305 (1%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +LEV +L++ + T G V AV+D+ F L GE LG+ GESG GKS LMG+
Sbjct: 14 ANVLLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQSRLRLMGLLAT 73
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
GRI GS +GREI+ LPE L R ++ISMIFQ M +LNP VG Q++E L+
Sbjct: 74 NGRI-GGSATFNGREILNLPERELNTR-RAEQISMIFQDPMTSLNPYMRVGEQLMEVLML 131
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIA 178
H+GMS+ +A + +++ L+ V + PE R YPHE SGGM+QRV+IA AL+ P ++IA
Sbjct: 132 HKGMSKAEAFEESVRMLDAVKM-PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 190
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPTTALDV VQAQI+ L+ LK++ ++I ITHDL ++A I DK+ +MYAG+ +E G
Sbjct: 191 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGK 250
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
+ V+Y+P HPY+ LL A+PRL + ++ IPG+PPNLL P GC F PRCP+AM+ C
Sbjct: 251 ARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEIC 310
Query: 299 KEEEP 303
P
Sbjct: 311 NNAPP 315
>dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 284 bits (718), Expect = 1e-75
Identities = 139/321 (43%), Positives = 212/321 (65%), Gaps = 4/321 (1%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-P 59
M +LE+ L+ ++FT +G V AVD V+ L +GE++G+ GESGCGKS ++M + P
Sbjct: 1 MPDVVLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVP 60
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
PPG+I+SG + G ++V + + K+IR I+MIFQ M +LNP++T+G Q+IE +
Sbjct: 61 NPPGKIMSGHVYFKGEDLVQVSPKRM-KQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAI 119
Query: 120 IYHRGMSREDALDRAMKYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
HR M++++A +A+ LE VG+ EI YPH+LSGGM+QRV+IA A+ +P ++I
Sbjct: 120 RNHRKMTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLI 179
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEPTTALDV +QAQI++LM+ L + +++ ITHDL ++AE+ +++ +MYAG++VE G
Sbjct: 180 ADEPTTALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEG 239
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
+ P HPYT+ LL ++P++HE ++L IPG P GCRF RC A +R
Sbjct: 240 DVRMILKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFER 299
Query: 298 CKEEEPKMVEVDKDHYAACWL 318
CK P++ +V H C+L
Sbjct: 300 CKTTAPQLQQVATGHQCRCFL 320
>sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075084|pir||C64184 oligopeptide transport
ATP-binding protein oppD - Haemophilus influenzae
(strain Rd KW20) >gi|1574676|gb|AAC22775.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppD)
[Haemophilus influenzae Rd]
Length = 323
Score = 283 bits (716), Expect = 2e-75
Identities = 149/317 (47%), Positives = 206/317 (64%), Gaps = 7/317 (2%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L+VKNL + + T G V AV+D+ F L G LG+ GESG GKS F LMG+ G
Sbjct: 4 LLDVKNLYVRFKTPDGVVTAVNDLNFTLNAGSTLGIVGESGSGKSQTAFALMGLLAANGE 63
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
V GS +G+E+V LP L K IR ++ISMIFQ M +LNP +G Q++E L H+G
Sbjct: 64 -VEGSAIFEGKELVNLPNAELNK-IRAEQISMIFQDPMTSLNPYMKIGEQLMEVLQLHKG 121
Query: 125 MSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIADEP 181
++ A ++K L+ V + PE R YPHE SGGM+QRV+IA AL+ P ++IADEP
Sbjct: 122 YDKQTAFAESVKMLDAVKM-PEAKKRMGMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 180
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV VQAQI+ L+ LK++ ++I ITHDL ++A I D++ +MYAG+ +E G +E+
Sbjct: 181 TTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDQVMVMYAGRTMEYGTAEQ 240
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
++Y P HPY+ L+ AIPRL + E L IPG+PPNLL+ P GC F PRC +A ++C +
Sbjct: 241 IFYHPTHPYSIGLMDAIPRLDGNEEHLVTIPGNPPNLLHLPKGCPFSPRCQFATEQC-QI 299
Query: 302 EPKMVEVDKDHYAACWL 318
PK+ + CWL
Sbjct: 300 APKLTTFNHGQLRNCWL 316
>pir||B72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980562|gb|AAD35168.1|AE001694_4 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 282 bits (715), Expect = 3e-75
Identities = 143/324 (44%), Positives = 212/324 (65%), Gaps = 9/324 (2%)
Query: 4 KILEVKNLKMYY----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMP 59
++L +NLK YY F + VKAVDDV + + E+ G+AGESGCGKS++ L
Sbjct: 2 EVLRTENLKSYYILDIFGKKRVVKAVDDVNISIMENEIYGIAGESGCGKSTLLRALFAAI 61
Query: 60 QPPGRIVSGSI--KIDGREI-VGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
+PP RIV G + + +G+E+ V D R+ +RW IS + QG+M+ LNPV +
Sbjct: 62 EPPQRIVGGKVLYRENGKEVDVYSLSDEERRRLRWSFISYVPQGSMSVLNPVVKIKETFK 121
Query: 117 EPLIYHR-GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
+ + H G ++E+A + A ++++ +GL EI+ YPH+LSGGM+QRV IA A +L P +
Sbjct: 122 DFIESHTTGKTKEEAYEMAKEHIKELGLPIEILNAYPHQLSGGMRQRVTIALATVLSPKV 181
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
+IADEPTTALDVV Q ++ L+K ++ ++I +THD+ + A ++D+IAIMYAGKI+E
Sbjct: 182 IIADEPTTALDVVTQRGVVQLLKEIQSSRQNTIILVTHDMGVHANVTDRIAIMYAGKIIE 241
Query: 236 IGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAM 295
G +E+++ P HPYT+ L+ ++P+ D + E PGSPP+L + P GC FHPRCP+A
Sbjct: 242 EGKTEEIFENPMHPYTKYLIYSLPKF-GDKGRRESAPGSPPSLADLPPGCSFHPRCPHAF 300
Query: 296 DRCKEEEPKMVEVDKDHYAACWLL 319
DRCK+E P + E H ACWL+
Sbjct: 301 DRCKKEVPPLKEYLPGHRVACWLV 324
>pir||D72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980803|gb|AAD35391.1|AE001712_4 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 282 bits (714), Expect = 4e-75
Identities = 141/323 (43%), Positives = 209/323 (64%), Gaps = 10/323 (3%)
Query: 3 KKILEVKNLKMYYFTSRGP----VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM 58
+KI +NL+ YYF G ++AVD+V+ + EV G+AGESGCGKS++ L G
Sbjct: 2 EKIAVAENLRAYYFIKSGDKTTSIRAVDNVSLHFFENEVYGIAGESGCGKSTLLKVLFGE 61
Query: 59 PQPPGRIVSGSI--KIDGRE--IVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQ 114
+PP ++V G + K+DG E I + D L+K IRW+ +S + QG+M+ LNPV +
Sbjct: 62 IKPPLKLVDGEVVFKLDGEEYRINSMSLDQLKK-IRWKYVSYVPQGSMSVLNPVRKIRRI 120
Query: 115 MIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPD 174
++ + H MSRE+A R Y E +GL ++ YPH+LSGGM+QRV IA A +L P
Sbjct: 121 FLDVIEEHTSMSREEAFSRIESYFEALGLPVRVLDSYPHQLSGGMRQRVTIALATVLNPK 180
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
++ ADEPTTALDVVVQ +I L+K++ K+ +++ +THD+ + A ++ +I +MYAG+++
Sbjct: 181 VIFADEPTTALDVVVQRGVIQLLKKIHKEQKNTLVIVTHDMGVHAHLATRIGVMYAGRLI 240
Query: 235 EIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYA 294
E + +++ P HPYT+ L+ ++PR D + E PGSPP+L N PSGC FHPRCP A
Sbjct: 241 EEAETHEIFKNPLHPYTRFLINSLPRF-GDRSRKEGTPGSPPSLANLPSGCPFHPRCPIA 299
Query: 295 MDRCKEEEPKMVEVDKDHYAACW 317
C E EP ++EV ++H ACW
Sbjct: 300 DQICMEMEPDLIEVARNHKVACW 322
>pir||G72283 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981745|gb|AAD36269.1|AE001776_5 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 281 bits (712), Expect = 6e-75
Identities = 143/323 (44%), Positives = 217/323 (66%), Gaps = 10/323 (3%)
Query: 5 ILEVKNLKMYY----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
++ KNLK YY + S+ VKAVD+V+ D+ E+ G+AGESGCGKS++ L+ +
Sbjct: 4 LISGKNLKAYYVLDLWGSKKVVKAVDNVSLDILPNEIYGIAGESGCGKSTLLKALLALLD 63
Query: 61 PPGRIVSGSI--KIDGR--EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
PP R++ G + I+GR + L + +RK +RW IS I QG+M+ LNPV V I
Sbjct: 64 PPLRLMDGELLYNIEGRPTNVTLLKSETIRK-LRWSFISYIPQGSMHVLNPVKRVRDTFI 122
Query: 117 EPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
E L H ++ LD A+++L+ +GL ++ +PH+LSGGM+QRV IA A +L+P ++
Sbjct: 123 EILSSHVKKQTKEFLDLAVQHLKDLGLPERVLNMFPHQLSGGMRQRVTIALATVLKPRVI 182
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
ADEPTTALDVV Q ++ L+++++ L +++ +THD+ + A+I+ ++AIMYAGKIVE
Sbjct: 183 FADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTRMAIMYAGKIVEE 242
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMD 296
GP+ +++ P HPYT+ L+ ++P + D + IPGSPP+L+ PP GCRFHPRCP+A
Sbjct: 243 GPTLEIFKNPLHPYTRYLIQSLPAI-GDKKLRSGIPGSPPSLVAPPPGCRFHPRCPHASQ 301
Query: 297 RCKEEEPKMVEVDKDHYAACWLL 319
RC+EEEP + E+ H AC+L+
Sbjct: 302 RCREEEPLLKEIKPGHKVACFLM 324
>pir||T45280 probable ABC transporter intracellular ATPase chain bldkD
[imported] - Streptomyces coelicolor
>gi|1532204|gb|AAB09557.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldkD
[Streptomyces coelicolor A3(2)]
Length = 353
Score = 279 bits (707), Expect = 2e-74
Identities = 146/307 (47%), Positives = 206/307 (66%), Gaps = 8/307 (2%)
Query: 6 LEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRI 65
L V++LK+++ T G VKAVD ++FDLE+G+ LG+ GESG GKS ++G+
Sbjct: 20 LSVRDLKVHFSTEGGVVKAVDGLSFDLERGKTLGIVGESGSGKSVTNLAVLGLHDRRRTA 79
Query: 66 VSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGM 125
+ GSI +DG+E+ E L K +R +K++MIFQ A+ AL+P YTVG Q+ EP + H G
Sbjct: 80 IDGSITLDGQELTDASEKQLEK-LRGKKMAMIFQDALTALSPYYTVGRQIAEPFMKHNGA 138
Query: 126 SREDALDRAMKYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTT 183
S++DA A+ L+ VG+ + V YPH+ SGG+ QR +IA AL PD++IADEPTT
Sbjct: 139 SKKDARCGAIDLLQKVGIPHPQKRVDDYPHQFSGGIGQRAMIAMALSCNPDLLIADEPTT 198
Query: 184 ALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVY 243
ALDV VQAQI++L+K L+++ ++I ITHDL ++ ++D I +MYAG+ VE G +V
Sbjct: 199 ALDVTVQAQILDLLKDLQQEFASAIIMITHDLGVVGNMADDIMVMYAGRAVERGTVREVL 258
Query: 244 YEPAHPYTQKLLAAIPRLHEDV-EKLEFIPGSPPNLLNPPSGCRFHPRCPY----AMDRC 298
P HPYT LL+++P L DV E L IPGSPP+L+NPPSGC FHPRC + + +RC
Sbjct: 259 KSPQHPYTWGLLSSMPNLTSDVDEPLMPIPGSPPSLMNPPSGCAFHPRCGFTDLVSGERC 318
Query: 299 KEEEPKM 305
E P +
Sbjct: 319 SGERPTL 325
>pir||F72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980512|gb|AAD35122.1|AE001690_16 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 330
Score = 277 bits (701), Expect = 1e-73
Identities = 142/325 (43%), Positives = 217/325 (66%), Gaps = 8/325 (2%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M + +L+ +N++ YY + VKAVD ++F++ + EV+G+ GESGCGK+++ +
Sbjct: 1 MKEILLKAENVRAYYKLEKVSVKAVDGLSFEILEDEVIGVVGESGCGKTTLSNVIFMNMV 60
Query: 61 PPGRIVSGSI--KIDGR--EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
P +V G I +++G E+ + D ++++ ++I++I Q AMNAL P + + +
Sbjct: 61 KPLTLVDGKIFLRVNGEFVELSSMTRDEVKRKFWGKEITIIPQAAMNALMPTIRME-KYV 119
Query: 117 EPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
L G+ E+ LD+A + E VGLDP + RYP ELSGGM+QR VIA A IL P ++
Sbjct: 120 RHLAESHGIDEEELLDKARRRFEEVGLDPLWIKRYPFELSGGMRQRAVIAIATILNPSLL 179
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKK-LGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
IADEPT+ALDVV Q ++ ++ ++K++ + S+IFITHD++ + +I+D++ IMYAGKIVE
Sbjct: 180 IADEPTSALDVVNQKVLLKVLMQMKRQGIVKSIIFITHDIATVRQIADRMIIMYAGKIVE 239
Query: 236 IGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEK--LEFIPGSPPNLLNPPSGCRFHPRCPY 293
P E + +P HPYTQ L ++ +V+K + IPG+PPNL+NPPSGCRFHPRCP+
Sbjct: 240 FAPVESLLEKPLHPYTQGLFNSVLTPEPEVKKRGITTIPGAPPNLINPPSGCRFHPRCPH 299
Query: 294 AMDRCKEEEPKMVEVDKDHYAACWL 318
AMD CKE+EP + E++ ACWL
Sbjct: 300 AMDVCKEKEPPLTEIEPGRRVACWL 324
>pir||B72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981773|gb|AAD36295.1|AE001778_16 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 277 bits (701), Expect = 1e-73
Identities = 144/321 (44%), Positives = 224/321 (68%), Gaps = 8/321 (2%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+A+ +L+V++L++YY T G VKAVD V+FD+++GE+LG+AGESGCGKS++G L+ + +
Sbjct: 4 VAEVVLDVRDLRIYYRTLYGYVKAVDGVSFDIKRGEILGIAGESGCGKSTLGNGLI-LLK 62
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
PP + + G +DG+ I+ L LRK +R++KIS+I Q AM+A+NP + Q+I+ L+
Sbjct: 63 PPMKYMGGEAILDGKNIMALSPKELRK-VRYEKISIIPQYAMDAMNPTKKIK-QIIDDLL 120
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+ G S E D + LE+V L +++ YP ELSGGMKQR+V+ + ++ PD++IADE
Sbjct: 121 HEHGESFERKKDVIEERLEIVNLGKKVLNMYPIELSGGMKQRMVMVISTLMNPDVLIADE 180
Query: 181 PTTALDVVVQAQIINLMKRLK-KKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
T+ALDV Q +I ++ ++ K++ S+ FITHDLS+L +I+DK+ ++YAG++ EI P
Sbjct: 181 ITSALDVSSQRSVIQMLYEMREKEIMGSLAFITHDLSVLYQIADKVMVLYAGRVAEISPM 240
Query: 240 EKVYYEPAHPYTQKLLAAIPRL--HEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
E + EP HPYT+ LL+++P++ KL+ IPG PP+LLN GCRF RCPYA ++
Sbjct: 241 EDIIQEPLHPYTKMLLSSLPKIGVRYSQTKLKGIPGYPPSLLNIGPGCRFRDRCPYAFEK 300
Query: 298 CKEEEPKMVEVDKDHYAACWL 318
C E++P + +VD +CWL
Sbjct: 301 C-EQDPPVFDVD-GRKVSCWL 319
>sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|1074009|pir||F64188 dipeptide transport ATP-binding
protein dppD - Haemophilus influenzae (strain Rd KW20)
>gi|972897|gb|AAA95974.1| (U17295) DppD [Haemophilus
influenzae] >gi|1574112|gb|AAC22838.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Haemophilus influenzae Rd]
Length = 330
Score = 275 bits (697), Expect = 4e-73
Identities = 134/303 (44%), Positives = 209/303 (68%), Gaps = 3/303 (0%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L+VK L +++ + P KAVD +++ + +GEVLG+ GESG GKS +MG+ PGR
Sbjct: 3 LLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGR 62
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
+ + S++ + +++ L E ++++ ++MIFQ M +LNP YTVG+Q++E L H G
Sbjct: 63 VSAESLQFENTDLLTL-ESKAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHEG 121
Query: 125 MSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
+++ DR ++ L+LVG+ DPE + YPH+LSGGM QRV+IA A+ P ++IADEPT
Sbjct: 122 GTKKARKDRTLELLKLVGIPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPT 181
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
TALDV +QAQI+ L+ L+KK +S+I ITHDL+++AE +++I +MYAG+IVE G ++ +
Sbjct: 182 TALDVTIQAQIMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKDI 241
Query: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
+ EP HPYTQ LL ++P E +LE + G P + P+GC +PRCPYA + C++ E
Sbjct: 242 FREPKHPYTQALLRSLPEFAEGKSRLESLQGVVPGKYDRPTGCLLNPRCPYATEYCRQVE 301
Query: 303 PKM 305
P++
Sbjct: 302 PQL 304
>emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related protein
[Thermoplasma acidophilum]
Length = 704
Score = 273 bits (690), Expect = 2e-72
Identities = 137/325 (42%), Positives = 211/325 (64%), Gaps = 17/325 (5%)
Query: 8 VKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVS 67
++N+ + + T G V A+ DV+FDL++G LG+ GESG GKS++ ++M + P ++
Sbjct: 1 MRNVSVEFKTYSGIVHALSDVSFDLKQGRFLGIVGESGSGKSTLALSIMSL-LPENAMMR 59
Query: 68 GSIKIDGREIVG--------------LPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
GSI + G E + + ED LR IRW+ ISM+FQGAMN+ NPVYT+
Sbjct: 60 GSIYLKGTEYISDVIINNAKKKKARKILEDNLRN-IRWKNISMVFQGAMNSFNPVYTIRR 118
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
QM E H + ++ + + L + GL+ ++ YPHELSGGMKQR VIA AL L+P
Sbjct: 119 QMFEVFKIHTTLDNDEIEKKVEEALRMAGLNISVLDMYPHELSGGMKQRAVIAMALSLDP 178
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGL-SMIFITHDLSILAEISDKIAIMYAGK 232
DIVIADEPTT LDV+ QA+II+ +K+LK+ + S+I I+HDL ++++++D++ ++YAGK
Sbjct: 179 DIVIADEPTTGLDVITQAEIISQLKKLKENGKIKSLILISHDLGVVSQLADEVMVLYAGK 238
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCP 292
+ E G +++ A+PYT KL+ + P + +E IPGS P+ + GC+F RC
Sbjct: 239 VFEYGEKSRIFQNTANPYTYKLIGSYPSIRNAKRYVEGIPGSLPDPMKIGKGCKFADRCY 298
Query: 293 YAMDRCKEEEPKMVEVDKDHYAACW 317
A D C+EEEP++++V+ +HY+AC+
Sbjct: 299 MARDVCREEEPELIKVEDNHYSACF 323
Score = 227 bits (573), Expect = 1e-58
Identities = 128/312 (41%), Positives = 191/312 (61%), Gaps = 20/312 (6%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGLP 81
V+AVDD+TF + KGE+LG+ GESG GK+++G TL+G+ P ++ S EI
Sbjct: 377 VRAVDDITFAIRKGEILGIVGESGSGKTTLGKTLLGLYSPTAGKITYSFSNGDVEITPTT 436
Query: 82 ED--VLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI---YHRG-MSREDALDRAM 135
+ ++R IR ++ MIFQ ++LNP TV + EP+I YH+G ++D +
Sbjct: 437 SESELMRSSIR-KETQMIFQDPYDSLNPKLTVYDIVAEPIIARRYHKGNKEKDDIYKNPL 495
Query: 136 KYLELV-------GLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALD 186
+ L LV L P ++RYPHELSGG +QRV A AL+L + +IADEPT+ LD
Sbjct: 496 EILNLVKIALAKASLKPVENYLFRYPHELSGGERQRVATARALVLNSEFIIADEPTSMLD 555
Query: 187 VVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEP 246
V ++A +N+MK ++ K G++M++I+HD++ +SDKI +MY GK VE+G ++ + EP
Sbjct: 556 VSIRASFMNMMKEIRSKEGITMVYISHDIASTYYMSDKILVMYLGKAVEMGSADAIINEP 615
Query: 247 AHPYTQKLLAAIPRLHEDVE--KLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPK 304
HPYT+ L+ AIP D + K++ I G N +N P GCRF+ RC Y D CK + P
Sbjct: 616 LHPYTKALIKAIPTPFSDWDPSKIDII-GEIGNAINVPKGCRFYNRCIYRQDICK-DNPP 673
Query: 305 MVEVDKDHYAAC 316
V+ +DH+ C
Sbjct: 674 TVKGAEDHWYLC 685
>sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|2125993|pir||S61404 dipeptide transport protein dppD
- Escherichia coli >gi|349228|gb|AAA23705.1| (L08399)
peripheral membrane protein [Escherichia coli]
>gi|466680|gb|AAB18519.1| (U00039) dppD [Escherichia
coli] >gi|1789963|gb|AAC76566.1| (AE000431) putative
ATP-binding component of dipeptide transport system
[Escherichia coli K12]
Length = 327
Score = 273 bits (690), Expect = 2e-72
Identities = 130/304 (42%), Positives = 204/304 (66%), Gaps = 5/304 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L V L +++ P +AVD +++ +++GEV+G+ GESG GKS +MG+ PGR
Sbjct: 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGR 62
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
+++ ++ +G+++ + E R+ + +++MIFQ M +LNP YTVG+Q++E + H+G
Sbjct: 63 VMAEKLEFNGQDLQRISEKE-RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG 121
Query: 125 MSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIADEP 181
++ RA+ L VG+ P+ R YPH+LSGGM QRV+IA A+ P ++IADEP
Sbjct: 122 GNKSTRRQRAIDLLNQVGI-PDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV +QAQII L+ L++K ++++ ITHDL+++AE + KI +MYAG++VE G +
Sbjct: 181 TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA 240
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
+++ P HPYTQ LL A+P +D E+L +PG P + P+GC +PRCPYA DRC+ E
Sbjct: 241 IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAE 300
Query: 302 EPKM 305
EP +
Sbjct: 301 EPAL 304
>dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 340
Score = 272 bits (687), Expect = 5e-72
Identities = 141/317 (44%), Positives = 203/317 (63%), Gaps = 4/317 (1%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
K +L+++NL + AVD+VT ++ K EVL + GESG GKS++ T+MG+ P
Sbjct: 4 KALLQIRNLTTAFQIKDDFYAAVDNVTLNVNKNEVLAIVGESGSGKSALANTIMGLHNPE 63
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
+ G I G +V LP L K IR K+SMIFQ + ALNP+ +G Q+ E L+ H
Sbjct: 64 RTKIEGEINFKGENLVKLPVSKLNK-IRGDKLSMIFQDPLTALNPLMIIGEQIGEALLLH 122
Query: 123 RGMSREDALDRAMKYLELVGLD-PEIVY-RYPHELSGGMKQRVVIATALILEPDIVIADE 180
R +++ + + + L LVG+ PE Y +YPHELSGGM+QRV+IA A+ EP+ +IADE
Sbjct: 123 RSLTKAERKKKVIDLLNLVGIPRPESTYEQYPHELSGGMRQRVMIAAAIACEPEFLIADE 182
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTTALDV +QAQI++L++ LK+K+ +I ITHDL ++AE++D++A+MYAG+IVEI
Sbjct: 183 PTTALDVTIQAQILDLIRDLKEKIHAGIILITHDLGVVAEMADRVAVMYAGQIVEIADVF 242
Query: 241 KVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLN-PPSGCRFHPRCPYAMDRCK 299
++ P HPYT+ LL ++P D EKL I G P L N P GCRF R P+ +
Sbjct: 243 TLFERPLHPYTRSLLNSVPSESNDQEKLHVIQGIVPALQNLPRKGCRFKDRIPWLSESAH 302
Query: 300 EEEPKMVEVDKDHYAAC 316
E+ P++ EV+ H+ C
Sbjct: 303 EDHPELHEVEPGHFVRC 319
>pir||C72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980544|gb|AAD35152.1|AE001692_9 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 331
Score = 271 bits (686), Expect = 7e-72
Identities = 145/324 (44%), Positives = 214/324 (65%), Gaps = 8/324 (2%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
+K+LE+++LK+Y+ + G VKAVD V+FD+ +GE+LGL GESGCGKS +++ +
Sbjct: 2 EKVLEIRDLKVYFDLTEGTVKAVDGVSFDIRRGEILGLVGESGCGKSVTAQSILRILPKS 61
Query: 63 GRIVSGSIKI--DGR--EIVGL-PEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
RIV+G I +G+ ++ L PE ++IR + ISMIFQ M + +PVYTVG QMIE
Sbjct: 62 ARIVNGEIVFHRNGKTLDLTRLDPEGEEIRDIRGKDISMIFQEPMASFSPVYTVGAQMIE 121
Query: 118 PLIYHRGMSREDALDRAMKYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDI 175
++ H +S+E+A R ++ L+ V + ++V YP ELSGGM QR +IA A+ L P +
Sbjct: 122 AILLHENVSKEEARKRVVEMLKKVKIPNAEKVVDMYPFELSGGMLQRCMIAMAMSLNPTL 181
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
++ADEPTTALDV +QAQI+ LMK L+K+ S++ ITHD+ ++A+++D++A+MY G IVE
Sbjct: 182 LLADEPTTALDVTIQAQILYLMKELQKEYHSSILLITHDMGVVAQMADRVAVMYLGNIVE 241
Query: 236 IGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRC-PYA 294
+++ P HPYTQ LL +IP++ +LE I G P+ N P+GCRFH RC +
Sbjct: 242 TAEVFELFKNPLHPYTQALLRSIPKIGIRKTRLETIKGMVPDPYNLPTGCRFHNRCEKFM 301
Query: 295 MDRCKEEEPKMVEVDKDHYAACWL 318
C +EP VEV H C+L
Sbjct: 302 KGLCDVKEPPEVEVKPGHKVKCFL 325
>gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 617
Score = 271 bits (685), Expect = 9e-72
Identities = 134/315 (42%), Positives = 213/315 (67%), Gaps = 3/315 (0%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L+V L YF G V V +V F++ E+ +AGESGCGKS++ + G+ + PG
Sbjct: 8 LLKVNELTAGYFNQDGFVIGVTNVNFEVYPNEIFAIAGESGCGKSTLAMAIYGLLKYPGV 67
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
++ G + + ++I+ + ++ LRK +R ++ + Q AM+AL+PV +G QM+ + H G
Sbjct: 68 VLRGHVYLKDKDILSITQEELRK-LRMKEFVYVPQFAMDALDPVAKIGDQMMRAAVSH-G 125
Query: 125 MSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTA 184
++ E+A + LELV L +V YPHELSGGM+QRVVIAT+++L P ++I DEPTT
Sbjct: 126 VNVEEARKLIKEKLELVDLPYNVVNMYPHELSGGMRQRVVIATSILLNPSLIILDEPTTG 185
Query: 185 LDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYY 244
LDV+VQ +I+ +KR++++LG+S++ I+HD+S+L ISD++ IMYAG+IVEIG E++
Sbjct: 186 LDVIVQYEILKDLKRIQRQLGVSLVIISHDISMLLMISDRVGIMYAGEIVEIGSKEEIIK 245
Query: 245 EPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNP-PSGCRFHPRCPYAMDRCKEEEP 303
P+HPYT L++++P L + EKL IPG+PP +L+ P+ CRF+ RCP+ M++C P
Sbjct: 246 RPSHPYTYLLISSLPSLVKRREKLLSIPGNPPLMLSKVPNSCRFYDRCPFKMEKCSTLNP 305
Query: 304 KMVEVDKDHYAACWL 318
+ ++ H A C+L
Sbjct: 306 ALGDIMDGHKARCFL 320
Score = 185 bits (465), Expect = 6e-46
Identities = 103/265 (38%), Positives = 170/265 (63%), Gaps = 19/265 (7%)
Query: 5 ILEVKNLKMYYFTSRG-----PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMP 59
++++ NL Y+ + P+ AV+DV+F+L+KG + L G SG GKS+I L GM
Sbjct: 356 VMKILNLSKIYYIRKNLILSEPINAVNDVSFELKKGTITALVGGSGHGKSTIAKILAGMI 415
Query: 60 QPPGRIVSGSIKIDGREI--VGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
Q SG I + G+++ G+ + KE + MIFQ ++L+P +TV + +
Sbjct: 416 QQ----TSGKIILLGKDVSEYGVRNSMWYKE----NVQMIFQDPYSSLDPRHTVRWHVER 467
Query: 118 PLIYHRGMSREDAL-DRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPD 174
PL+ H+ +S +D L + ++ L+ VGL P + +Y+YPHELSGG +QRV IA A +EP
Sbjct: 468 PLLIHKKVSNKDQLLPKIIEVLKNVGLKPPEKYLYKYPHELSGGERQRVAIARATAVEPK 527
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
+++ADEP + LD ++A I+NL+K+ KK G+S+++ITHD++ + I+D+I ++Y G+IV
Sbjct: 528 VLVADEPVSMLDASLRAGILNLIKKFKKN-GISILYITHDIATVNYIADEIMVIYKGRIV 586
Query: 235 EIGPSEKVYYEPAHPYTQKLLAAIP 259
E G + +V P+H YT++L+ A+P
Sbjct: 587 EKGNTYEVISNPSHEYTKRLIEAVP 611
>dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 322
Score = 270 bits (684), Expect = 1e-71
Identities = 145/326 (44%), Positives = 207/326 (63%), Gaps = 14/326 (4%)
Query: 1 MAKKILEVKNLKMYY-----FTSR--GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGF 53
M K +LEVKNL + F SR G V+AVD+++F + +GEVLG+ GESGCGKS+ G
Sbjct: 1 MGKPLLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGK 60
Query: 54 TLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
++ + +P SG + G EI L E +RK R + + +IFQ +LNP +T+
Sbjct: 61 AILRLIEPS----SGEVYFAGTEITALSEGDMRK--RRRDMQIIFQDPYASLNPRHTIEK 114
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
+ EPLI H+ ++++ L+R + LE VGL + RYPH+ SGG +QR+ IA AL + P
Sbjct: 115 IIREPLIVHQIGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHP 174
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
+VI DEP +ALDV VQ+QI+NLM LK+ L+ IFI HDLS++ ISD++A+MY G++
Sbjct: 175 KLVICDEPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRM 234
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLE-FIPGSPPNLLNPPSGCRFHPRCP 292
VE+ ++++ P HPYT+ LL+A+P D K + + G P+ NPP GC FH RCP
Sbjct: 235 VEMATKDQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCP 294
Query: 293 YAMDRCKEEEPKMVEVDKDHYAACWL 318
MD CK + P + E +K HY AC L
Sbjct: 295 DCMDVCKIKRPSLHEKEKGHYVACHL 320
>pir||B72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980543|gb|AAD35151.1|AE001692_8 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 338
Score = 270 bits (683), Expect = 2e-71
Identities = 145/327 (44%), Positives = 210/327 (63%), Gaps = 19/327 (5%)
Query: 4 KILEVKNLKMYYFTSRG-------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLM 56
K+LEVK LK Y+ ++G V+AVDDV+FD+++GE L L GESGCGK++ +++
Sbjct: 2 KLLEVKGLKKYFPLTKGFFKKVVGYVRAVDDVSFDIKQGETLALVGESGCGKTTTAKSIL 61
Query: 57 GMPQPP-GRIVSGSIKIDGRE--IVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
P G ++ + +DG++ I L D L+ R+ + MIFQ +LNP V
Sbjct: 62 RAIDPTDGDVI---LHLDGKDVNIAKLSRDELKPYRRYMQ--MIFQNPYTSLNPRMKVKE 116
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
+ EPL+ + ++ DR + L+ VGL PE + RYPH SGG +QR+VIA A+ L P
Sbjct: 117 IVGEPLLVNGIAKGKELEDRVAELLKAVGLRPEYMIRYPHAFSGGQRQRIVIARAIALRP 176
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
+V+ DEPT+ALDV ++AQI+NL+ L+++ L+ +FITHDLS++ ISD++A+MY GKI
Sbjct: 177 KLVVCDEPTSALDVSIRAQILNLLMDLQEEFALTYLFITHDLSVVEHISDRVAVMYLGKI 236
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDV-EKLEFIPGSPPNLLNPPSGCRFHPRCP 292
VE+ +E+++ P HPYT+ LL ++P+ D+ E+L I G PN NPPSGC FHPRCP
Sbjct: 237 VELSSTEEIFENPKHPYTETLLRSVPKPDPDLREELVPIEGEVPNPANPPSGCYFHPRCP 296
Query: 293 YAMDRCKEEEPKMVEV---DKDHYAAC 316
YA CKEE P+ + D HY AC
Sbjct: 297 YAKSICKEEYPEFRNLGTEDNPHYVAC 323
>pir||F71130 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3257221|dbj|BAA29904.1|
(AP000003) 323aa long hypothetical oligopeptide
transport ATP-binding protein APPF [Pyrococcus
horikoshii]
Length = 323
Score = 269 bits (680), Expect = 4e-71
Identities = 148/323 (45%), Positives = 210/323 (64%), Gaps = 15/323 (4%)
Query: 5 ILEVKNL-KMYYFTS-----RGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM 58
++EVKNL K++ TS + ++AVD+V+F+++K E+LGL GESGCGKS++G L+ +
Sbjct: 6 LIEVKNLTKLFPVTSSILGKKISIRAVDNVSFEIKKNEILGLVGESGCGKSTLGKLLVRL 65
Query: 59 PQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
+P SG++ G++I L L KE R + + M+FQ + +P T+ + EP
Sbjct: 66 LEP----TSGTVLFKGQDIYKLRGKKL-KEYR-KSVQMVFQNPYTSFDPRLTLFENIAEP 119
Query: 119 LIYHR-GMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDI 175
L H+ +++E+AL AM+Y E VGL P + + RYPHELSGG QR IA A+ LEP+
Sbjct: 120 LYTHKLALNKEEALTLAMQYFEDVGLTPPEDFLMRYPHELSGGQLQRASIARAIALEPEF 179
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
++ADEPT+ LD +++ I+NL+K+L+K+L S +FITHDL I+D+IA+MY GKIVE
Sbjct: 180 IVADEPTSMLDASLRSGILNLIKKLRKELHTSWLFITHDLPSAYYIADRIAVMYLGKIVE 239
Query: 236 IGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAM 295
IG S++V P HPYTQ LL A + D E P + CRF PRCPYA
Sbjct: 240 IGESKEVLKNPLHPYTQALLEANLPIDPDASLKEPKVKGEPKPVFETGYCRFFPRCPYAF 299
Query: 296 DRCKEEEPKMVEVDKDHYAACWL 318
++CK+EEP +VEV KDHY ACWL
Sbjct: 300 EKCKKEEPPLVEVKKDHYVACWL 322
>gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [Halobacterium sp.
NRC-1]
Length = 363
Score = 268 bits (678), Expect = 6e-71
Identities = 143/321 (44%), Positives = 202/321 (62%), Gaps = 6/321 (1%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
+ IL ++NL+ + T ++AVD ++ + GE LG+ GESG GKS ++MG+ P
Sbjct: 16 ESILSIRNLQTVFRTDHEHIRAVDGISLSISPGETLGIVGESGSGKSVTARSIMGLVDAP 75
Query: 63 GRIV-SGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
G ++ SI DG E+ L D + E+R + MIFQ + +LNPVYTVG Q+ E L
Sbjct: 76 GEVLPESSIVFDGTELTELSADQYQ-EVRGSGVGMIFQDPLKSLNPVYTVGNQIREALRI 134
Query: 122 HRGMSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
+RG++ ++A D A+ LE V + DPE + YP+E SGGM+QR VIA L +PD++I D
Sbjct: 135 NRGITGQEATDVAIDLLEDVAIPDPERRLDEYPNEFSGGMRQRAVIAMMLACDPDVLICD 194
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV +QAQI+ L++ ++ + L+++FITHD+ ++AEISD++ +MYAG+ VE P
Sbjct: 195 EPTTALDVTIQAQIVELLQDIQAERDLAILFITHDMGVIAEISDRVNVMYAGEFVEKAPV 254
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCK 299
E+++ P HPYTQ LL AIP D E+L I G P P + CRF PRCP A + C
Sbjct: 255 EELFANPKHPYTQGLLDAIPGTSVDDERLNTIEGDVPTPNQPATDCRFAPRCPKAFEDCT 314
Query: 300 EEEPKMVEVD--KDHYAACWL 318
E P V V DH AC L
Sbjct: 315 EVHPTHVSVSDTHDHSTACLL 335
>pir||C72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 325
Score = 267 bits (676), Expect = 1e-70
Identities = 146/328 (44%), Positives = 209/328 (63%), Gaps = 21/328 (6%)
Query: 5 ILEVKNLKMYYFTSRGP-----------VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGF 53
++EV+NLK Y+ +GP VKAVD V F +++G+ LGL GESG GK++ G
Sbjct: 3 LIEVQNLKKYFPVKQGPIDVLLRKPRKFVKAVDGVNFQIDEGKSLGLVGESGSGKTTTGR 62
Query: 54 TLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
++ + +P G I DGR+I L ++ +RK +R +++ +IFQ M +LNP VG
Sbjct: 63 VILRLEEP----TDGKIIFDGRDITKLSKEEMRK-LR-KEMQIIFQDPMASLNPYMRVGK 116
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALIL 171
+ L H R + ++ L V L+P +I RYP ELSGG +QRVVIA ALIL
Sbjct: 117 AIEHALEIHGIGDRSSRKEMVLEMLRRVNLEPAEDIYRRYPRELSGGQRQRVVIARALIL 176
Query: 172 EPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAG 231
+P +V+ADE LDV V++Q++ L++ L+K+ L+M+FITHDL+ + D+IA+MY G
Sbjct: 177 KPRLVVADEAVAMLDVSVRSQLLRLLQELRKEFNLTMLFITHDLATTKYVCDEIAVMYLG 236
Query: 232 KIVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIP-GSPPNLLNPPSGCRFHPR 290
KIVEIG E +Y P HPYTQ L++A+P +K +FIP G PN ++ PSGCRFHPR
Sbjct: 237 KIVEIGDFEDIYLNPKHPYTQALISAVPEPSLKKKK-KFIPEGETPNPIDVPSGCRFHPR 295
Query: 291 CPYAMDRCKEEEPKMVEVDKDHYAACWL 318
CPY MD C +EEP++ V+++H AC L
Sbjct: 296 CPYRMDICMKEEPQLKAVEENHKVACHL 323
>pir||F83082 probable ATP-binding component of ABC dipeptide transporter PA4506
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950746|gb|AAG07894.1|AE004864_6 (AE004864) probable
ATP-binding component of ABC dipeptide transporter
[Pseudomonas aeruginosa]
Length = 323
Score = 267 bits (675), Expect = 1e-70
Identities = 130/317 (41%), Positives = 208/317 (65%), Gaps = 13/317 (4%)
Query: 5 ILEVKNLKMYYFTSRG------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM 58
+L ++L +Y SRG V+A++ V+F+LE G+ L + GESGCGKS++ L +
Sbjct: 4 VLTARDLTRHYEVSRGLFKGHAQVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLI 63
Query: 59 PQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
+P SGS+KI G+E+ G +D R+++R + + M+FQ +LNP +G Q+ EP
Sbjct: 64 EEP----TSGSLKIAGQEVKGASKDQ-RRQLR-RDVQMVFQNPYASLNPRQKIGDQLAEP 117
Query: 119 LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
L+ + +SRE+ ++ + + VGL PE RYPH SGG +QR+ +A A++L+P +++A
Sbjct: 118 LLINTALSREERREKVQQMMRQVGLRPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLVA 177
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPT+ALDV +QAQ++NL L+++ + +FI+H+L+++ ++D + +MY G+ E+GP
Sbjct: 178 DEPTSALDVSIQAQVLNLFMDLQQQFRTAYVFISHNLAVVRHVADDVLVMYLGRPAEMGP 237
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEF-IPGSPPNLLNPPSGCRFHPRCPYAMDR 297
++K+Y P HPYT+ LL+A P +H D K + I G PN LNPP GC FH RCPYA +R
Sbjct: 238 ADKLYENPLHPYTRALLSATPAIHPDPTKPKIRIQGELPNPLNPPEGCAFHKRCPYATER 297
Query: 298 CKEEEPKMVEVDKDHYA 314
C+ E P++ +D+ A
Sbjct: 298 CRSEVPELRLLDQRQVA 314
>sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TR
>gi|1486422|emb|CAA92400.1| (Z68203) OppD homologue
[Rhizobium sp.] >gi|2182648|gb|AAB91871.1| (AE000098)
Y4tR [Rhizobium sp. NGR234]
Length = 335
Score = 265 bits (671), Expect = 4e-70
Identities = 135/320 (42%), Positives = 209/320 (65%), Gaps = 5/320 (1%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-PQ 60
A +L+V++L+ +++ +A+ V F ++ GE+LG+ GESGCGKS +++ + P+
Sbjct: 9 ADLLLDVRDLETHFYGEESVTRALGGVNFHVKSGEMLGIVGESGCGKSVTALSILRLLPK 68
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
+ V G + GR ++ L E +R E+R +I+MIFQ M +L+PV+TVG Q+ E +
Sbjct: 69 QTAKTVGGEVIFKGRNLLELSERQMR-EVRGNRIAMIFQDPMTSLSPVHTVGRQIAEAVQ 127
Query: 121 YHRGMSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIA 178
H +SR +AL++A++ L LV + DPE + YPHE+SGGM+QR +IA AL P+++IA
Sbjct: 128 IHGRVSRAEALEKALEMLRLVRIADPERRLNNYPHEMSGGMRQRAMIAMALACSPELLIA 187
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPTTALDV +QAQI+ L+ LK ++G +++FITHDL ++AE ++ +MYAG+IVE
Sbjct: 188 DEPTTALDVTIQAQILRLIVDLKDRMGTAVMFITHDLGVVAETCQRVIVMYAGRIVEQAS 247
Query: 239 SEKVYYEPAHPYTQKLLAAIP-RLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
++ P HPYT+ L+ ++P R +L IPG P+L P GC F RCP+A+
Sbjct: 248 VTDLFARPTHPYTRALMNSVPDRRRGRQSRLPEIPGVVPSLREPLVGCSFAERCPFAIGV 307
Query: 298 CKEEEPKMVEVDKDHYAACW 317
C+E+ P + E+ H AACW
Sbjct: 308 CREKMPVLSEIQPGHAAACW 327
>emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD) [Thermoplasma
acidophilum]
Length = 321
Score = 264 bits (668), Expect = 9e-70
Identities = 140/321 (43%), Positives = 205/321 (63%), Gaps = 10/321 (3%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L +K+L ++Y T G K +DD+ D+++GE++ L GES GKS++G + M P G
Sbjct: 2 LLSIKHLNVWYNTVAGKYKVIDDLNLDIDQGELVSLVGESASGKSTLGQVISRMLPPVG- 60
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
I SG + +DG +++ L E + K IR + MIFQ +N+LNPV + Q++E L
Sbjct: 61 ITSGEVVLDGVDVLKLSEKEMTK-IRGTTVFMIFQNPLNSLNPVKRIEEQLMEALAIRNS 119
Query: 125 -----MSREDALDRAMKYLELVGL-DPE-IVYRYPHELSGGMKQRVVIATALILEPDIVI 177
M+ E+A +K LE + L DPE I+ RYPHELSGG QRVVI AL+L P ++I
Sbjct: 120 RMNIQMTFEEARKEVIKALESLRLPDPEKILIRYPHELSGGQVQRVVICMALLLRPKLLI 179
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEPTTALDV +QAQ++ L+K L + +++IFITHD+ + +SD++ + YAG+++E G
Sbjct: 180 ADEPTTALDVTIQAQVVKLLKDLNRDTKMTIIFITHDVGLAYVLSDRMLVFYAGRVMEQG 239
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
+ ++ P HPYT LLA+IP + KL IPG PP+ L+ P GC+F PRC +A +R
Sbjct: 240 QTVEIVKNPLHPYTSGLLASIPSSPKHSGKLYSIPGYPPSYLSLPKGCKFAPRCRFAFER 299
Query: 298 CKEEEPKMVEVDKDHYAACWL 318
C EEEP ++ D + CWL
Sbjct: 300 CFEEEPSYIKKD-NRLIRCWL 319
>pir||A72216 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982328|gb|AAD36815.1|AE001813_7 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 264 bits (667), Expect = 1e-69
Identities = 130/319 (40%), Positives = 211/319 (65%), Gaps = 8/319 (2%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
K +L+ +LK Y+ + +KAVD ++ ++++GE LGL GESGCGKS++G T++ + +P
Sbjct: 11 KPLLQTVDLKKYFPQGKRILKAVDGISIEIKEGETLGLVGESGCGKSTLGRTILKLLRPD 70
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
G G I +G++I L D K R +K+ +IFQ + +LNP TVG + +PLI H
Sbjct: 71 G----GKIFFEGKDITNL-NDKEMKPYR-KKMQIIFQDPLGSLNPQMTVGRIIEDPLIIH 124
Query: 123 RGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
+ ++++ R + L++VG+ E + +PHE SGG +QR+ IA AL L P ++ DEP
Sbjct: 125 KIGTKKERRKRVEELLDMVGIGREFINSFPHEFSGGQQQRIGIARALALNPKFIVCDEPV 184
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
+ALDV +QAQII+L++ +++K+G+S +FI H+L+++ IS K+A+MY GKIVE G +K+
Sbjct: 185 SALDVSIQAQIIDLLEEIQQKMGISYLFIAHNLAVVEHISHKVAVMYLGKIVEYGDVDKI 244
Query: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEF--IPGSPPNLLNPPSGCRFHPRCPYAMDRCKE 300
+ P HPYT+ LL ++P++ D +K F + G P+ ++ P GCRF RC C E
Sbjct: 245 FLNPIHPYTRALLKSVPKIPWDGQKQRFYSLKGELPSPIDLPKGCRFQTRCTEKKAICFE 304
Query: 301 EEPKMVEVDKDHYAACWLL 319
+EP++ EV+K+H+ +C L+
Sbjct: 305 KEPELTEVEKNHFVSCHLV 323
>pir||G75202 dipeptide abc transporter, dipeptide-binding protein PAB0095 -
Pyrococcus abyssi (strain Orsay)
>gi|5457579|emb|CAB49070.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 345
Score = 263 bits (666), Expect = 2e-69
Identities = 145/325 (44%), Positives = 200/325 (60%), Gaps = 17/325 (5%)
Query: 3 KKILEVKNLKMYYFTSRGPVK-------AVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
K + +NLK Y+ G K AVD ++ ++ KGE GLAGESGCGKS+ G L
Sbjct: 4 KDFIVTENLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLL 63
Query: 56 MGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQM 115
+ + +P GSI DG +I L +D +RK R ++ ++FQ ++LNP T+ +
Sbjct: 64 LRLIEP----TEGSIYFDGIDITKLDKDEMRKLRR--RMGIVFQDPKSSLNPRMTIYDTL 117
Query: 116 IEPLIYHR-GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPD 174
PL HR S E+ D+ ++ LE VGL E + RYPHELSGG QRV IA A+I PD
Sbjct: 118 KRPLEIHRLAESEEEKYDKIVEILEAVGLGEEHLSRYPHELSGGQLQRVSIARAIITNPD 177
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
V+ DEPT+ALD+ VQAQI+NL+ L++K L+ +FI+HD+S+L +SD+I IMY GK+V
Sbjct: 178 FVVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVV 237
Query: 235 EIGPSEKVYY-EPAHPYTQKLLAAIPRLH--EDVEKLEFIPGSPPNLLNPPSGCRFHPRC 291
EI + E HPYT LL + P LH + + + G P+ +N P GCRFH RC
Sbjct: 238 EILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRC 297
Query: 292 PYAMDRCKEEEPKMVEVDKDHYAAC 316
P+ +CK+EEP +VE+ KDHY AC
Sbjct: 298 PFVTQKCKDEEPPLVEIKKDHYVAC 322
>emb|CAA61525.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 356
Score = 263 bits (665), Expect = 2e-69
Identities = 140/318 (44%), Positives = 205/318 (64%), Gaps = 4/318 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
IL K++ + + + A+ +V+ +L +GEVL GESG GKS + T GM + GR
Sbjct: 8 ILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGR 67
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
I +GSI G+E+ L + +IR KI+ IFQ M +L+P+ T+G Q+ E +I H+
Sbjct: 68 IANGSIVYRGQELTDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQK 127
Query: 125 MSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIADEP 181
+S A + A+ Y+ VG+ P R YP E SGGM+QR+VIA AL PDI+I DEP
Sbjct: 128 VSHAKAKEMALDYMNKVGI-PNAKKRFEDYPFEYSGGMRQRIVIAIALACRPDILICDEP 186
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV +QAQI+ L+K L+++ ++IFITHDL ++A I+DK+A+MYAG+IVE G E+
Sbjct: 187 TTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVEFGTVEE 246
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
++Y+P HPYT LL+++P+L ++ +L IPG+PP+L +P G F R YAM E+
Sbjct: 247 IFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEK 306
Query: 302 EPKMVEVDKDHYAACWLL 319
P + V + H+A WLL
Sbjct: 307 APPAINVSETHWAKTWLL 324
>gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . (dppD-2)
[Sulfolobus solfataricus]
Length = 323
Score = 263 bits (664), Expect = 3e-69
Identities = 136/316 (43%), Positives = 211/316 (66%), Gaps = 4/316 (1%)
Query: 6 LEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRI 65
L+V++L + Y +G ++A++ V F LEKG+ LG+ GE+G GK++I +M P
Sbjct: 3 LQVRDLNISYKIGKGSIRAINRVYFQLEKGDSLGVIGETGSGKTTIANAIM-RALPENAE 61
Query: 66 VSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH-RG 124
SGSI + ++I+ + ++ RKEIRW+KIS+I Q +MNA NP+ VG Q+++ ++ +
Sbjct: 62 YSGSIFFNNKDILKMDQETYRKEIRWKKISIIPQYSMNAFNPIKRVGEQLVKIMMENDSN 121
Query: 125 MSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTA 184
+ A +R + L PEI + P ELSGG +QRVVIA+AL+L+P++VIADEPTTA
Sbjct: 122 IDTSKASERIFYLFNQLSLPPEIYKKLPDELSGGQRQRVVIASALLLDPELVIADEPTTA 181
Query: 185 LDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYY 244
LDV+ QA++I+L+KR ++I+ITHD++++A ++ K+ +YAG+I+E G S K++
Sbjct: 182 LDVINQARVISLIKREIVDKQKTLIYITHDIAVVAGVAKKVLTLYAGEIMEFGDSRKIFK 241
Query: 245 EPAHPYTQKLLAAIPRLH-EDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEP 303
EP HPY++ LL+++P + V+K+ +IPG PP+L GC F PRC A D CK E+P
Sbjct: 242 EPLHPYSKGLLSSVPDIRFGKVKKVHYIPGDPPDLSKEIKGCPFAPRCSIAKDICKVEKP 301
Query: 304 KMVEVDKDHYAACWLL 319
K+ VD Y AC L+
Sbjct: 302 KLRYVD-GRYVACHLV 316
>pir||T35982 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464267|emb|CAB37470.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 398
Score = 263 bits (664), Expect = 3e-69
Identities = 137/314 (43%), Positives = 200/314 (63%), Gaps = 7/314 (2%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+LEV++LK+ Y G AV V L GE LG+AGESGCGKS++ L+ + PPG
Sbjct: 3 LLEVRDLKVTY---PGGAAAVRGVDLTLAAGEKLGVAGESGCGKSTLALALLRL-LPPGA 58
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
V G I +DG +++ + +R +RW S++FQGAM++LN V+ VG Q+ EP++ HR
Sbjct: 59 RVGGEILLDGEDVLTMKWGRVRA-VRWAGASIVFQGAMHSLNAVHRVGDQIAEPILLHRR 117
Query: 125 MSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTA 184
+ A RA + LE VGL YPHELSGG +QRV+IA AL +P +++ADEPTTA
Sbjct: 118 TTAAGARRRAGELLEQVGLPAARASAYPHELSGGQRQRVMIAMALACDPRLIVADEPTTA 177
Query: 185 LDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYY 244
LDV++QAQI+ L++ L + + +I I+HDL++LA+ D++A+MYAG++VE GP+ +VY
Sbjct: 178 LDVMIQAQILRLIEGLVGEQDVGLIMISHDLAVLADTCDRLAVMYAGRVVEEGPARQVYD 237
Query: 245 EPAHPYTQKLLAAIPRLHEDVEKL--EFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
+ HPY + L A P + + + +PG PP+ PSGC FHPRCP A+D C ++
Sbjct: 238 DARHPYGRALSEAFPTIGDPASRFAPRGLPGDPPDPAAVPSGCAFHPRCPVALDLCATQD 297
Query: 303 PKMVEVDKDHYAAC 316
+ + AAC
Sbjct: 298 QPLRDAGARRRAAC 311
>pir||A72618 probable oligopeptide transport ATP-binding protein APE1402 -
Aeropyrum pernix (strain K1) >gi|5105085|dbj|BAA80399.1|
(AP000061) 347aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 262 bits (663), Expect = 4e-69
Identities = 143/321 (44%), Positives = 205/321 (63%), Gaps = 16/321 (4%)
Query: 5 ILEVKNLKMYY-----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMP 59
++E LK Y+ F +R VKAVD+VT + +G+ LGL GESG GK++ G ++ +
Sbjct: 30 LVETVGLKKYFPVKSLFFTRAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLE 89
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
+P G G I DG +++ L L KE R ++ +IFQ +LNP T+ + EP+
Sbjct: 90 EPTG----GRIFFDGIDVMKLRGRGL-KEFR-RRAQIIFQDPYGSLNPRKTIFNLIAEPI 143
Query: 120 IYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H G+ D + + L VGL+ +YRYPHE SGG +QR+ IA L L+P+ ++ D
Sbjct: 144 KVH-GIKVGDLQEYIVSLLYQVGLNETHLYRYPHEFSGGQRQRIAIARVLALKPEFIVLD 202
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPT+ALDV VQAQI+NL+K L++K L+ +FI+HDL ++ +SD IA+MY GKIVE G +
Sbjct: 203 EPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEA 262
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEF---IPGSPPNLLNPPSGCRFHPRCPYAMD 296
E+V+ +P HPYT+ LL +IP +V K I G PP+ +NPPSGCRF RCP A+D
Sbjct: 263 EEVFEKPLHPYTKVLLESIPVPDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCPIAVD 322
Query: 297 RCKEEEPKMVEVDKDHYAACW 317
+C EEP + EV++ H+ ACW
Sbjct: 323 KCL-EEPPLEEVERGHWVACW 342
>pir||E64557 dipeptide transport ATP-binding protein dppD - Helicobacter pylori
(strain 26695) >gi|2313399|gb|AAD07370.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Helicobacter pylori 26695]
Length = 287
Score = 261 bits (659), Expect = 1e-68
Identities = 129/266 (48%), Positives = 195/266 (72%), Gaps = 3/266 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
ILEVK+LK Y+FT +G KAVD V+F L+K + L + GESG GKS +++G+ + PG+
Sbjct: 2 ILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEKPGQ 61
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL-IYHR 123
IV GSI+ G++++ L E ++KEIR +KI MIFQ M +LNP YTVG+Q+ E L I+H
Sbjct: 62 IVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVLKIHHP 121
Query: 124 GMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
+++++ L+R + LE VG+ + + YP LSGG +QRV+IA A++ EP+I+IADEP
Sbjct: 122 NLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEILIADEP 181
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV +QAQI+ LMK L++K G S++FITHDL ++A+I+D++ +MY G +VE +++
Sbjct: 182 TTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQASAKE 241
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEK 267
++ +P HPYT+ LL+AIP+ ++ K
Sbjct: 242 LFADPRHPYTKALLSAIPKPGKEYRK 267
>sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF
>gi|2119774|pir||I40544 oligopeptide transport
ATP-binding protein appF - Bacillus subtilis
>gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus
subtilis] >gi|2633491|emb|CAB12994.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 329
Score = 260 bits (657), Expect = 2e-68
Identities = 138/324 (42%), Positives = 201/324 (61%), Gaps = 15/324 (4%)
Query: 5 ILEVKNLKMYY------FTSR-GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
ILE++++K Y+ F + G VKAVD V+F L+KGE LG+ GESGCGKS+ G T++
Sbjct: 9 ILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTMIR 68
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
+ +P G I G++I L E+ LRK +R + I M+FQ +LNP T+ + E
Sbjct: 69 LYKP----TEGQILFKGQDISNLSEEKLRKSVR-KNIQMVFQDPFASLNPRKTLRSIIKE 123
Query: 118 PLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
P H + + ++ + L VGL P RYPHE SGG +QR+ IA AL L P+++I
Sbjct: 124 PFNTHNMYTMRERNEKVEELLARVGLHPSFAGRYPHEFSGGQRQRIGIARALTLNPELII 183
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEP +ALDV +Q Q+INLM+ L+++ L+ +FI+HDLS++ ISD++ +MY GK++E+
Sbjct: 184 ADEPVSALDVSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELT 243
Query: 238 PSEKVYYEPAHPYTQKLLAAIP--RLHEDVEKLEFI-PGSPPNLLNPPSGCRFHPRCPYA 294
++Y P HPYTQ LL+++P R V++ + G P+ NPP GC FH RCP A
Sbjct: 244 GKHELYDNPLHPYTQALLSSVPVTRKRGSVKRERIVLKGELPSPANPPKGCVFHTRCPVA 303
Query: 295 MDRCKEEEPKMVEVDKDHYAACWL 318
CKE+ P+ E H+ AC L
Sbjct: 304 KPICKEQIPEFKEAAPSHFVACHL 327
>pir||H71951 dipeptide transport system dipeptide transport system ATP-binding
protein - Helicobacter pylori (strain J99)
>gi|4154800|gb|AAD05856.1| (AE001465) DIPEPTIDE
TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 260 bits (657), Expect = 2e-68
Identities = 129/266 (48%), Positives = 194/266 (72%), Gaps = 3/266 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
ILEVK+LK Y+FT +G KAVD V+F L+K + L + GESG GKS +++G+ + PG+
Sbjct: 2 ILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEKPGK 61
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL-IYHR 123
IV GSI+ G++++ L E ++KEIR +KI MIFQ M +LNP YTVG+Q+ E L I+H
Sbjct: 62 IVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVLKIHHP 121
Query: 124 GMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
+++++ L+R + LE VG+ + + YP LSGG +QRV+IA A++ EP+I+IADEP
Sbjct: 122 SLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEILIADEP 181
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV +QAQI+ LMK L++K G S++FITHDL ++A+I+D++ +MY G +VE +++
Sbjct: 182 TTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQASAKE 241
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEK 267
++ +P HPYT+ LL AIP+ ++ K
Sbjct: 242 LFADPRHPYTKALLNAIPKPGKEYRK 267
>gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dppD-3) [Sulfolobus
solfataricus]
Length = 324
Score = 259 bits (656), Expect = 2e-68
Identities = 142/323 (43%), Positives = 210/323 (64%), Gaps = 15/323 (4%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L+++NL +YY T VK + DV D+EKGE++G+ GESG GKS++G + + PP
Sbjct: 6 VLQIRNLNVYYNTLISWVKVLSDVNLDVEKGEIVGVVGESGSGKSTLGHAISRI-LPPNA 64
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP--LIYH 122
+ G I +DG + L + L+K R + MIFQ +N+LNPV VG Q++E + Y
Sbjct: 65 RIQGDIIVDGVNLAKLKDSELQK-YRGTWVFMIFQNPLNSLNPVKKVGSQLLEAVKIRYQ 123
Query: 123 RG--MSREDALDR----AMKYLELVGLDP-EIVYRYPHELSGGMKQRVVIATALILEPDI 175
R + E++L R +K L L DP I+ RYPH+LSGG QR+VI+ AL+L+P +
Sbjct: 124 REGKKAEEESLMRDVIEVLKDLRLP--DPYSIIDRYPHQLSGGQVQRIVISMALLLKPKL 181
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
+IADEPT+ALDV +QAQ++NL K+L K++ S++FITHD+S+ +SD+I +MYAG+I+E
Sbjct: 182 LIADEPTSALDVTIQAQVVNLFKQLNKEINTSILFITHDISLAYVVSDRIVVMYAGRIME 241
Query: 236 IGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAM 295
G E+V P HPYTQ L+A+IP ++ +KL IPG+PP+ P+GC+F RC
Sbjct: 242 DGKVEEVLKSPMHPYTQGLVASIPSGDKN-QKLTAIPGNPPSFFALPTGCKFSNRCSKVF 300
Query: 296 DRCKEEEPKMVEVDKDHYAACWL 318
D C+++EP ++E CWL
Sbjct: 301 DICRKKEPSIIE-KNGRKIRCWL 322
>sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIE
>gi|98018|pir||S11152 oligopeptide transport protein
amiE - Streptococcus pneumoniae
>gi|47346|emb|CAA35216.1| (X17337) AmiE protein
[Streptococcus pneumoniae]
Length = 355
Score = 257 bits (651), Expect = 9e-68
Identities = 137/318 (43%), Positives = 202/318 (63%), Gaps = 4/318 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
IL +++ + + + A+ V+ +L +GEVL L GESG GKS + T GM + GR
Sbjct: 8 ILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFRGMLEENGR 67
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
I GSI G+++ L ++IR KI+ IFQ M +L+P+ T+G Q+ E ++ H+G
Sbjct: 68 IAEGSIDYRGQDLTALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQG 127
Query: 125 MSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIADEP 181
+ ++A + A+ Y+ VG+ P+ R YP + SGGM+QR+VIA AL PD++I DEP
Sbjct: 128 KTAKEAKELAIDYMNKVGI-PDADRRFNEYPFQYSGGMRQRIVIAIALACRPDVLICDEP 186
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV +QAQII+L+K L+ + + IFITHDL ++A I+DK+A+MYAG+IVE G E+
Sbjct: 187 TTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVEYGTVEE 246
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
V+Y+P HPYT LL+++P+L +D L IPG+PP+L G F R YAM E+
Sbjct: 247 VFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQ 306
Query: 302 EPKMVEVDKDHYAACWLL 319
+ V + H+A WLL
Sbjct: 307 KAPQFSVSETHWAKTWLL 324
>sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|7442535|pir||B64872 oligopeptide transport
ATP-binding protein oppF - Escherichia coli
>gi|1742036|dbj|BAA14779.1| (D90763) Oligopeptide
transport ATP-binding protein OppF. [Escherichia coli]
>gi|1787500|gb|AAC74329.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 334
Score = 257 bits (651), Expect = 9e-68
Identities = 134/314 (42%), Positives = 202/314 (63%), Gaps = 11/314 (3%)
Query: 7 EVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIV 66
E+K+ K +++ +KAVD VT L +GE LG+ GESGCGKS+ ++G+ +
Sbjct: 22 EIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV----KAT 77
Query: 67 SGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL-IYHRGM 125
G + G+E++G+ D R +R I MIFQ + +LNP T+G + EPL YH M
Sbjct: 78 DGHVAWLGKELLGMKPDEWRA-VR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKM 135
Query: 126 SREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTAL 185
SR++ +R + VGL P ++ RYPHE SGG QR+ IA ALILEP ++I DEP +AL
Sbjct: 136 SRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 195
Query: 186 DVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYE 245
DV +QAQ++NL+++L++++GLS+IFI HDL+++ ISD++ +MY G VE+G ++VY+
Sbjct: 196 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 255
Query: 246 PAHPYTQKLLAAIPRLHEDVEK---LEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
P HPYT+ L++A+P D+EK ++ + G P+ +NPPSGC F RCP A C +
Sbjct: 256 PLHPYTRALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTR 315
Query: 303 PKMVEVDKDHYAAC 316
P ++E H +C
Sbjct: 316 P-VLEGSFRHSVSC 328
>sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|72454|pir||QREBOF oligopeptide transport protein
oppF - Salmonella typhimurium >gi|47806|emb|CAA29043.1|
(X05491) Opp F (AA1-334) [Salmonella typhimurium]
Length = 334
Score = 257 bits (649), Expect = 2e-67
Identities = 136/327 (41%), Positives = 206/327 (62%), Gaps = 20/327 (6%)
Query: 3 KKILEVKNLKMYYFTSRGP---------VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGF 53
K +LE+ +LK+++ G +KAVD VT L +GE LG+ GESGCGKS+
Sbjct: 9 KVLLEIADLKVHFDIKEGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFAR 68
Query: 54 TLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
++G+ + G + G++++G+ D R E+R I MIFQ + +LNP T+G
Sbjct: 69 AIIGLV----KATDGKVAWLGKDLLGMKADEWR-EVR-SDIQMIFQDPLASLNPRMTIGE 122
Query: 114 QMIEPL-IYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
+ EPL YH +SR+D DR + VGL P ++ RYPHE SGG QR+ IA ALILE
Sbjct: 123 IIAEPLRTYHPKLSRQDVRDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILE 182
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
P ++I D+ +ALDV +QAQ++NL+++L++++GLS+IFI HDL+++ ISD++ +MY G
Sbjct: 183 PKLIICDDAVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 242
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVE---KLEFIPGSPPNLLNPPSGCRFHP 289
VE+G ++VY+ P HPYT+ L++A+P D+E K++ + G P+ +NPPSGC F
Sbjct: 243 AVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLERNKKIQLLEGELPSPINPPSGCVFRT 302
Query: 290 RCPYAMDRCKEEEPKMVEVDKDHYAAC 316
RCP A C + P ++E H +C
Sbjct: 303 RCPIAGPECAQTRP-VLEGSFRHAVSC 328
>sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TS
>gi|1486423|emb|CAA92401.1| (Z68203) OppF homologue
[Rhizobium sp.] >gi|2182649|gb|AAB91872.1| (AE000098)
Y4tS [Rhizobium sp. NGR234]
Length = 353
Score = 256 bits (646), Expect = 3e-67
Identities = 135/324 (41%), Positives = 206/324 (62%), Gaps = 14/324 (4%)
Query: 1 MAKKILEVKNLKMYY------FTSRGPV-KAVDDVTFDLEKGEVLGLAGESGCGKSSIGF 53
M+ +L+V++L +Y F + PV +AV+DV+F ++ GE L + GESGCGKS++
Sbjct: 1 MSDALLKVESLTKHYPIEAGWFKTNVPVVRAVEDVSFTVQAGETLCVVGESGCGKSTLAR 60
Query: 54 TLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
LM + P SG + ++G +I GL ++ LR R ++ M+FQ ++LNP T G
Sbjct: 61 LLMRLIDP----TSGRVLVEGTDIAGLRKNELRAWRR--RMQMVFQDPYSSLNPRLTAGQ 114
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
+ EP+ +SR + A L VG+ PE+ RYP E+SGG +QR+ IA AL L+P
Sbjct: 115 IITEPVENFECLSRRQRQELATDLLRKVGMSPEMASRYPSEMSGGQRQRLGIARALALKP 174
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
++IADE +ALDV VQAQI+NL+ L+++ G+++IFI+HDL+++ I ++A+MY G+I
Sbjct: 175 SLIIADEAVSALDVSVQAQILNLLMDLQQETGIALIFISHDLAVVEHIGHRVAVMYLGRI 234
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEF-IPGSPPNLLNPPSGCRFHPRCP 292
VE+ P + ++ +P HPYT+ L+AA P +LE + G P+ +NPPSGC FHPRCP
Sbjct: 235 VELSPRDALFAKPVHPYTEALIAAAPVPDPARARLEVPLEGEVPSPVNPPSGCAFHPRCP 294
Query: 293 YAMDRCKEEEPKMVEVDKDHYAAC 316
A+DRC+ E P +V + AC
Sbjct: 295 LAVDRCRAEVPPLVPMPDGRAVAC 318
>dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 332
Score = 255 bits (644), Expect = 6e-67
Identities = 133/326 (40%), Positives = 197/326 (59%), Gaps = 16/326 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRG-------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGF 53
M + +LE K L ++ S G ++AVD V + GE LG+ GESGCGKS++G
Sbjct: 1 MKEVLLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQ 60
Query: 54 TLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
LM + +P G++ G + + L + LR+ + I +IFQ ++LNP TV
Sbjct: 61 LLMRLLEP----TRGTLSFAGSDFLALKGEALRQ--KRSDIQIIFQDPFSSLNPRMTVRE 114
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
+ EPL HR D + R + ++ VGLD RYPHE SGG +QR+ IA A+ L+P
Sbjct: 115 IIGEPLKTHRLAKGNDLIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIALKP 174
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
++I DEP +ALDV +QAQI+NLM RL+K+ L+ +FI H L + ISD++A+MY GK+
Sbjct: 175 KLIICDEPVSALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKV 234
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDV---EKLEFIPGSPPNLLNPPSGCRFHPR 290
VE+ + ++ +P HPY++ L+ A+P V +K + G P+ ++PPSGCRFHPR
Sbjct: 235 VELASKDALFAQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPR 294
Query: 291 CPYAMDRCKEEEPKMVEVDKDHYAAC 316
CPYA D+C +EP + E + H+ AC
Sbjct: 295 CPYAQDKCTVQEPALTEKEPGHFVAC 320
>pir||B72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981604|gb|AAD36138.1|AE001766_4 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 341
Score = 254 bits (643), Expect = 8e-67
Identities = 142/328 (43%), Positives = 206/328 (62%), Gaps = 19/328 (5%)
Query: 5 ILEVKNLKMYYFTSR--------GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLM 56
+LEVKNLK Y+ + G +KAVD ++F +E+GE LGL GESGCGK++ +M
Sbjct: 3 LLEVKNLKKYFPIIKRGFRRKVVGYLKAVDGISFHIEEGETLGLVGESGCGKTTTAKLIM 62
Query: 57 -GMPQPPGRIVSGSIKIDGR--EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
G+ G IV + +DG +I L E LR++ + + MIFQ ++LNP TV
Sbjct: 63 RGIEPTEGEIV---LNMDGEKVDITKLSEKELREKGVRRFLQMIFQDPYSSLNPRMTVRD 119
Query: 114 QMIEPLIYHRGMSREDALDRAMK-YLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
+ EPL+ + + ++ +D + L VGL PE + RYPH SGG +QR+ IA A+ L+
Sbjct: 120 IIAEPLVVNGVIKGKEEIDAIVSDLLRAVGLRPEYMQRYPHAFSGGQRQRIAIARAIALK 179
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
P +V+ DEPT+ALDV VQAQIINL+K L+K+ L+ +FI+HDL ++ I++++A+MY G+
Sbjct: 180 PKLVLCDEPTSALDVSVQAQIINLLKDLQKEYNLTYLFISHDLGVVEHITNRVAVMYVGR 239
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAAIPRLH-EDVEKLEFIPGSPPNLLNPPSGCRFHPRC 291
IVE+ +E+++ P HPYT+ LL+A+P+ + K + G P+ NPPSGC FHPRC
Sbjct: 240 IVELAETEELFSSPKHPYTEALLSAVPKPDPKRKRKKAQLTGEVPDPSNPPSGCYFHPRC 299
Query: 292 PYAMDRCKEEEPKMVEVDKD---HYAAC 316
PYA CKE P + V D H AC
Sbjct: 300 PYAKAICKEVYPDLRNVGTDQNPHLVAC 327
>gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF)
[Archaeoglobus fulgidus] >gi|7442541|pir||B69471
dipeptide transport ATP-binding protein dppF -
Archaeoglobus fulgidus >gi|2648778|gb|AAB89479.1|
(AE000980) dipeptide ABC transporter, ATP-binding
protein (dppF) [Archaeoglobus fulgidus]
Length = 323
Score = 253 bits (639), Expect = 2e-66
Identities = 136/324 (41%), Positives = 203/324 (61%), Gaps = 21/324 (6%)
Query: 5 ILEVKNLKMYYFTSRGP-----------VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGF 53
+L V+NLK Y+ + V+AVD V+F++++GEVL L GESGCGK++ G
Sbjct: 1 MLRVENLKKYFPVQKSVLEVLLSGRRDFVRAVDGVSFEMKQGEVLSLVGESGCGKTTTGR 60
Query: 54 TLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
++G+ +P SG I REI L E+ R+ R I M+FQ +LNP +G
Sbjct: 61 IIVGLERP----TSGKIYFKDREITSLSEEEQRRMKR--HIQMVFQDPYASLNPRMKIGE 114
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVY-RYPHELSGGMKQRVVIATALILE 172
++E L H ++A + AM L+ VGL E + R P++LSGG +QRV IA A+IL+
Sbjct: 115 HLVESLTIHGIAENDEAREMAMSMLDRVGLPGEQFFNRMPYQLSGGQRQRVAIARAMILK 174
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
PD V+ADEP + +DV ++A I++L+ + + LSM+FITHDLS+ + D+IA+MY GK
Sbjct: 175 PDFVVADEPVSMIDVSLRAAILDLLMSFRDEYNLSMLFITHDLSVARIVGDRIAVMYLGK 234
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCP 292
I+EIG + +V + P HPYT LL+++P + K+E I G N ++ PSGCR+HPRCP
Sbjct: 235 IMEIGKTREVIHNPRHPYTAALLSSVPSFVKKGRKVEII-GDIANPIDIPSGCRYHPRCP 293
Query: 293 YAMDRCKEEEPKMVEVDKDHYAAC 316
+A ++CK+EEP++ +H AC
Sbjct: 294 FAREKCKKEEPEL--EGGEHSFAC 315
>sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1074010|pir||E64188 dipeptide transport ATP-binding
protein dppF - Haemophilus influenzae (strain Rd KW20)
>gi|972898|gb|AAA95975.1| (U17295) DppF [Haemophilus
influenzae] >gi|1574111|gb|AAC22837.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Haemophilus influenzae Rd]
Length = 327
Score = 250 bits (633), Expect = 1e-65
Identities = 128/320 (40%), Positives = 197/320 (61%), Gaps = 13/320 (4%)
Query: 5 ILEVKNLKMYYFTSRG------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM 58
+L LK YY +G VKA+D V+F LE+G+ L + GESGCGKS++G L +
Sbjct: 11 LLNAIGLKKYYPVKKGLFAKPQQVKALDGVSFQLERGKTLAVVGESGCGKSTLGRLLTMI 70
Query: 59 PQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
+P G + G L D K +R +KI ++FQ +LNP +G + EP
Sbjct: 71 EEP----TKGELYYKGHNF--LENDSETKALRRKKIQIVFQNPYASLNPRKKIGSILEEP 124
Query: 119 LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
LI + +S ++ ++ + +E VGL E RYPH SGG +QR+ IA L+L+PD+V+A
Sbjct: 125 LIINTKLSAKERREKVLSMMEKVGLRAEFYDRYPHMFSGGQRQRIAIARGLMLDPDVVVA 184
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEP +ALDV V+AQ++NLM L+ +LGLS +FI+HDLS++ I+D++ +MY G+ +E G
Sbjct: 185 DEPVSALDVSVRAQVLNLMMDLQDELGLSYVFISHDLSVVEHIADEVMVMYLGRCIEKGT 244
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEF-IPGSPPNLLNPPSGCRFHPRCPYAMDR 297
+E+++ P HPYT+ LL+A PRL ++ + + G P+ +NPP GC F+PRC A ++
Sbjct: 245 TEQIFSNPQHPYTKALLSATPRLSPNLRRERIKLTGELPSPINPPKGCAFNPRCWKATEK 304
Query: 298 CKEEEPKMVEVDKDHYAACW 317
C+E +P + + AC+
Sbjct: 305 CRENQPHLEQHTDGKLIACF 324
>pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC1095 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655564|gb|AAF94254.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 336
Score = 249 bits (630), Expect = 3e-65
Identities = 134/327 (40%), Positives = 208/327 (62%), Gaps = 20/327 (6%)
Query: 3 KKILEVKNLKMYY---------FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGF 53
K +L+VK+LK+++ +T +KAVD V L +GE LG+ GESGCGKS+
Sbjct: 12 KLLLDVKDLKVHFNITPKSAWPWTKPVTLKAVDGVNVRLYEGETLGVVGESGCGKSTFAR 71
Query: 54 TLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
++G+ Q G + G+++ + E V R+ R Q I MIFQ + +LNP TVG
Sbjct: 72 AIIGLVQA----THGEVVWLGQDLTRMQE-VKRRATRKQ-IQMIFQDPLASLNPRMTVGD 125
Query: 114 QMIEPL-IYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
+ EPL ++ +S+++ DR + + VGL P ++ RYPHE SGG QR+ IA ALIL+
Sbjct: 126 IIAEPLQTFYPELSKQEVKDRVKEMMAKVGLLPNVINRYPHEFSGGQCQRIGIARALILK 185
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
P ++I DEP +ALDV +QAQ++NL+K L+K+LGLS++FI HDLS++ ISD++ +MY G
Sbjct: 186 PKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLVMYLGN 245
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEK---LEFIPGSPPNLLNPPSGCRFHP 289
VE+G S++++ P HPYT+ L++A+P ++E+ ++ + G P+ +NPPSGC F
Sbjct: 246 AVELGVSKELFANPKHPYTKALMSAVPIPDPNIERNKTIQMLEGDLPSPMNPPSGCVFRT 305
Query: 290 RCPYAMDRCKEEEPKMVEVDKDHYAAC 316
RCP A C + +P +++ H +C
Sbjct: 306 RCPQATAECAKTKP-VIKGSDIHSVSC 331
>gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia coli]
Length = 333
Score = 249 bits (628), Expect = 4e-65
Identities = 128/312 (41%), Positives = 198/312 (63%), Gaps = 13/312 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRGP------VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFT 54
+ + +L+ +LK +Y +G VKA+D V+F+LE+G+ L + GESGCGKS++G
Sbjct: 8 LQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRL 67
Query: 55 LMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQ 114
L + P G G + G+++ L D +++R QKI ++FQ +LNP VG
Sbjct: 68 LTMIEMPTG----GELYYQGQDL--LKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQI 121
Query: 115 MIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPD 174
+ EPL+ + +S+E ++A+ + VGL E RYPH SGG +QR+ IA L+L+PD
Sbjct: 122 LEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPD 181
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
+VIADEP +ALDV V+AQ++NLM L+++LGLS +FI+HDLS++ I+D++ +MY G+ V
Sbjct: 182 VVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 241
Query: 235 EIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEF-IPGSPPNLLNPPSGCRFHPRCPY 293
E G ++++ P HPYTQ LL+A PRL+ D + + G P+ LNPP GC F+ RC
Sbjct: 242 EKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIKLSGELPSPLNPPPGCAFNARCRR 301
Query: 294 AMDRCKEEEPKM 305
C + +P++
Sbjct: 302 RFGPCTQLQPQL 313
>sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1073370|pir||S47762 dipeptide transport protein dppF
- Escherichia coli >gi|466679|gb|AAB18518.1| (U00039)
was dppE [Escherichia coli] >gi|1789962|gb|AAC76565.1|
(AE000431) putative ATP-binding component of dipeptide
transport system [Escherichia coli K12]
Length = 334
Score = 249 bits (628), Expect = 4e-65
Identities = 128/312 (41%), Positives = 198/312 (63%), Gaps = 13/312 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRGP------VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFT 54
+ + +L+ +LK +Y +G VKA+D V+F+LE+G+ L + GESGCGKS++G
Sbjct: 8 LQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRL 67
Query: 55 LMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQ 114
L + P G G + G+++ L D +++R QKI ++FQ +LNP VG
Sbjct: 68 LTMIEMPTG----GELYYQGQDL--LKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQI 121
Query: 115 MIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPD 174
+ EPL+ + +S+E ++A+ + VGL E RYPH SGG +QR+ IA L+L+PD
Sbjct: 122 LEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPD 181
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
+VIADEP +ALDV V+AQ++NLM L+++LGLS +FI+HDLS++ I+D++ +MY G+ V
Sbjct: 182 VVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 241
Query: 235 EIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEF-IPGSPPNLLNPPSGCRFHPRCPY 293
E G ++++ P HPYTQ LL+A PRL+ D + + G P+ LNPP GC F+ RC
Sbjct: 242 EKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIKLSGELPSPLNPPPGCAFNARCRR 301
Query: 294 AMDRCKEEEPKM 305
C + +P++
Sbjct: 302 RFGPCTQLQPQL 313
>sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN RV1281C
>gi|7445626|pir||A70756 probable ABC-type peptide
transport protein - Mycobacterium tuberculosis (strain
H37RV) >gi|1480305|emb|CAB00901.1| (Z77137) oppD
[Mycobacterium tuberculosis]
Length = 612
Score = 247 bits (625), Expect = 1e-64
Identities = 134/316 (42%), Positives = 203/316 (63%), Gaps = 6/316 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+LEV +L + + T PV AV +++ +E GEV+ + GESG GKS+ ++G+ P
Sbjct: 4 LLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGL-LPEYA 62
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
V GS+++ G E++GL ++ + + R + I +FQ M+AL PVYTVG Q+ E + H+
Sbjct: 63 QVRGSVRLQGTELLGLADNAMSR-FRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQP 121
Query: 125 -MSREDALDRAMKYLELVGLD-PEIVYR-YPHELSGGMKQRVVIATALILEPDIVIADEP 181
+ ++ A RA++ L+LVG+ P+ R +PHELSGG +QRVVIA A+ +PD++I DEP
Sbjct: 122 RVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV VQAQI++++K + G ++ ITHDL ++AE +D+ +MYAG++VE
Sbjct: 182 TTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVND 241
Query: 242 VYYEPAHPYTQKLLAAIPRLH-EDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKE 300
+Y + PYT LL ++PRL +L IPG+PP+L GC F PRCP +D C
Sbjct: 242 LYRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVIDECLT 301
Query: 301 EEPKMVEVDKDHYAAC 316
EP++++V DH AAC
Sbjct: 302 AEPELLDVATDHRAAC 317
Score = 173 bits (435), Expect = 2e-42
Identities = 97/241 (40%), Positives = 151/241 (62%), Gaps = 7/241 (2%)
Query: 20 GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVG 79
G V+AVD ++ +L +G LG+ GESG GKS+ ++ + P SGSI++ G ++
Sbjct: 372 GEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQ----SGSIEVLGTDVAT 427
Query: 80 LPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLE 139
L R+ +R + I ++FQ + +L+P V + EPL G + + R + L+
Sbjct: 428 LGT-AERRSLR-RDIQVVFQDPVASLDPRLPVFDLIAEPL-QANGFGKNETHARVAELLD 484
Query: 140 LVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKR 199
+VGL RYP E SGG KQR+ IA AL L+P I+ DEP +ALDV +QA IINL+
Sbjct: 485 IVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIINLLLD 544
Query: 200 LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIP 259
L+++ GLS +F++HDLS++ ++ ++A+M AG +VE G SE+V+ P H YT++LL A+P
Sbjct: 545 LQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRRLLGAVP 604
Query: 260 R 260
+
Sbjct: 605 Q 605
>pir||F71211 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3258402|dbj|BAA31085.1|
(AP000007) 335aa long hypothetical oligopeptide
transport ATP-binding protein appF [Pyrococcus
horikoshii]
Length = 335
Score = 247 bits (624), Expect = 1e-64
Identities = 139/334 (41%), Positives = 207/334 (61%), Gaps = 23/334 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGP-----------VKAVDDVTFDLEKGEVLGLAGESGCGKS 49
M++ IL+V+NLK Y+ RG VKAVD V+F++ K +V L GESGCGK+
Sbjct: 1 MSEPILKVENLKKYFPVRRGFLSALRGEPQKFVKAVDGVSFEIYKQQVFALVGESGCGKT 60
Query: 50 SIGFTLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVY 109
+ G ++ + +P G I ++G+++ L K R +K+ MIFQ +++NP +
Sbjct: 61 TTGKLIVKLLEP----TDGKIYLEGQDVTELRTKEEIKAYR-RKVQMIFQDPFSSMNPRF 115
Query: 110 TVGYQMIEPLIYHR-GMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIA 166
+ + EPL+ H G +R + + K LE+V + P E V R+PH LSGG +QRV IA
Sbjct: 116 RIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIA 175
Query: 167 TALILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIA 226
ALIL P V+ADEP + LDV ++A+I+ LMK LK+K+G++ ++ITHDLS +D IA
Sbjct: 176 RALILNPTFVVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIA 235
Query: 227 IMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPR---LHEDVEKLEFIPGSPPNLLNPPS 283
+MY G+IVE+GP++++ P HPYT+ LLAA+P +DV K I G P+ +N PS
Sbjct: 236 VMYLGRIVEMGPAKEIIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPS 295
Query: 284 GCRFHPRCPY-AMDRCKEEEPKMVEVDKDHYAAC 316
GCRFHPRC Y C ++P+++E +H+ C
Sbjct: 296 GCRFHPRCIYFKKGLCDVKQPQLIEYSHNHWVEC 329
>pir||F75026 oligopeptide transport ATP-binding protein appf. PAB1197 -
Pyrococcus abyssi (strain Orsay)
>gi|5459166|emb|CAB50652.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF. [Pyrococcus abyssi]
Length = 335
Score = 246 bits (621), Expect = 3e-64
Identities = 138/334 (41%), Positives = 206/334 (61%), Gaps = 23/334 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGP-----------VKAVDDVTFDLEKGEVLGLAGESGCGKS 49
MA+ IL+V+NLK Y+ RG V+AVD ++F++ K +V L GESGCGK+
Sbjct: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
Query: 50 SIGFTLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVY 109
+ G ++ + +P G I ++G+++ L K R +++ MIFQ +++NP +
Sbjct: 61 TTGKLVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRF 115
Query: 110 TVGYQMIEPLIYHR-GMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIA 166
+ + EPL+ H G +R + + K LE+V + P E V R+PH LSGG +QRV IA
Sbjct: 116 RIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIA 175
Query: 167 TALILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIA 226
ALIL P ++ADEP + LDV ++A+I+ LMK LK+K+G++ ++ITHDLS +D IA
Sbjct: 176 RALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIA 235
Query: 227 IMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPR---LHEDVEKLEFIPGSPPNLLNPPS 283
+MY G+IVE+GP+++V P HPYT+ LLAA+P +DV K I G P+ +N P
Sbjct: 236 VMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPP 295
Query: 284 GCRFHPRCPY-AMDRCKEEEPKMVEVDKDHYAAC 316
GCRFHPRC Y C +EPK++E +H+ C
Sbjct: 296 GCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
>pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376983|gb|AAD18821.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189002|gb|AAF37954.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979054|dbj|BAA98889.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 244 bits (617), Expect = 9e-64
Identities = 125/317 (39%), Positives = 194/317 (60%), Gaps = 4/317 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
IL++++L + R V ++F + +G+ L + GESG GKS ++ + P
Sbjct: 6 ILQIEDLSITLAKQRQQYPIVQSLSFTINEGQTLAIIGESGSGKSVSAHAILRLLPCPPF 65
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
VSG + G ++ + +K+I +ISMIFQ +LNPV+T+ Q E + H
Sbjct: 66 SVSGQVNFQGHNLLTASRSI-QKKIIGTEISMIFQNPQASLNPVFTIEQQFREIIHTHLA 124
Query: 125 MSREDALDRAMKYLELVGL-DPEIVYR-YPHELSGGMKQRVVIATALILEPDIVIADEPT 182
++ E A ++ + LE G DP + YPH+LSGGM QR+ IA AL+ P ++IADEPT
Sbjct: 125 LTAEVAKEKMLYALEETGFHDPRLCLNLYPHQLSGGMLQRICIAMALLCSPKLLIADEPT 184
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
TALDV VQ QI+ L+K L+KK G+S++ ITH++ ++AE +D + ++YAG++VE P+ ++
Sbjct: 185 TALDVSVQYQILQLLKTLQKKTGMSLLIITHNMGVVAETADDVLVLYAGRMVECAPAVQM 244
Query: 243 YYEPAHPYTQKLLAAIPRLH-EDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
++ P+HPYT+ LLA+ P L + + IPG PP+ PSGCR+HPRC ++RC E
Sbjct: 245 FHNPSHPYTRDLLASRPSLQPQQLGSFNPIPGQPPHYTAFPSGCRYHPRCSKILNRCSAE 304
Query: 302 EPKMVEVDKDHYAACWL 318
P++ V + H CWL
Sbjct: 305 APEIYPVREGHKVRCWL 321
>pir||E83082 probable ATP-binding component of ABC transporter PA4505 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9950745|gb|AAG07893.1|AE004864_5 (AE004864) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 324
Score = 244 bits (617), Expect = 9e-64
Identities = 129/304 (42%), Positives = 188/304 (61%), Gaps = 6/304 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+L++KNL + F V VD + ++KGEVL + GESG GKS LMG+ PG
Sbjct: 3 LLDIKNLSVR-FGDTTAVPVVDGLDLSVDKGEVLAIVGESGSGKSVTMMALMGLIDAPGW 61
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
+ + ++ DG +++ L + R+ I + ++M+FQ M ALNP YTVGYQ+ E L H G
Sbjct: 62 VSADHLRFDGHDMLTL-KGRQRRRIVGKDMAMVFQDPMTALNPSYTVGYQIEEVLRLHLG 120
Query: 125 MSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIADEP 181
+ + RA++ LE V + P R YPH+LSGGM QRV IA A+ EP ++IADEP
Sbjct: 121 LRGKALRQRALELLERVEI-PAAASRLDAYPHQLSGGMSQRVAIAMAIAAEPKLLIADEP 179
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV +QAQI+ L+ L++ +++I ITHDL+++AE + ++ +MYAG+ VEIG
Sbjct: 180 TTALDVTIQAQIMELLLNLQRDQDMALILITHDLAVVAETAQRVCVMYAGEAVEIGGVPA 239
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
++ P HPYT+ L+ AIP +L +PG P + P GC PRCPYA + C++E
Sbjct: 240 LFDRPTHPYTEALIKAIPEHCAGEARLATLPGIVPGRYDRPRGCLLSPRCPYAQEHCRQE 299
Query: 302 EPKM 305
P +
Sbjct: 300 RPAL 303
>emb|CAC05751.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 356
Score = 244 bits (617), Expect = 9e-64
Identities = 143/314 (45%), Positives = 191/314 (60%), Gaps = 20/314 (6%)
Query: 5 ILEVKNL-KMYYFTSR-------GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLM 56
ILEV+ L K Y TS G VKAVD V F L +GE LG+ GESGCGKS++ L+
Sbjct: 8 ILEVRGLVKHYPLTSGILFKKQVGAVKAVDGVDFRLARGETLGIVGESGCGKSTVAKMLV 67
Query: 57 GMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
+ +P +G I+ G +I L L K +R + I M+FQ +LNP TVG +
Sbjct: 68 NLERP----TAGEIRYKGEDITRLSGRAL-KSVR-RNIQMVFQDPYTSLNPRMTVGDIIG 121
Query: 117 EPLIYHRGMS-REDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
E H ++ + D R L++VGL+PE + RYPH+ SGG +QR+ IA L L P+I
Sbjct: 122 EAYDIHPEVAPKGDRRRRVQDLLDVVGLNPEYINRYPHQFSGGQRQRIGIARGLALRPEI 181
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
++ADEP +ALDV VQAQ+INLM RL+ + LS IFI HDLSI+ ISD++ +MY G+IVE
Sbjct: 182 IVADEPVSALDVSVQAQVINLMARLQDEFDLSYIFIAHDLSIVRHISDRVGVMYLGRIVE 241
Query: 236 IGPSEKVYYEPAHPYTQKLLAAI----PRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRC 291
G E++Y P HPYTQ LL+A+ P E E++ + G P+ N PSGCRF RC
Sbjct: 242 TGRDEEIYDHPTHPYTQALLSAVPVPDPEAREHRERI-ILSGDVPSPTNIPSGCRFRTRC 300
Query: 292 PYAMDRCKEEEPKM 305
A +RC E P +
Sbjct: 301 WKARERCALEVPAL 314
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 244 bits (616), Expect = 1e-63
Identities = 137/298 (45%), Positives = 194/298 (64%), Gaps = 20/298 (6%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGLP 81
V+A+D+V+ ++ KGEVLG+ GESG GK+++G L + +P G G++ G E+
Sbjct: 35 VRALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLATLEKPTG----GNLIFMGMEVNDRN 90
Query: 82 EDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLELV 141
+ +RK I M+FQ M ++NP V + E + +E +R K LE V
Sbjct: 91 INHVRKHIH-----MVFQNPMTSINPRMKVKDIVREAM-------KEKREERVKKLLEEV 138
Query: 142 GLDPEIVY-RYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKRL 200
GLD V +YP ELSGG QRV IA AL EPD +I DEPT+ALD VQAQI+NL+ L
Sbjct: 139 GLDYNYVKDKYPRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASVQAQILNLLVDL 198
Query: 201 KKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPR 260
+K+ L+ +FITH++++ ISD++ IMYAGKIVE G +++V EP HPYTQ LL+++P
Sbjct: 199 QKERKLTYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKEVISEPMHPYTQSLLSSVPE 258
Query: 261 LHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAACWL 318
L + ++L+ G P+L+NPPSGCRF+PRCP+AM CKE+EP +VE++ ACWL
Sbjct: 259 LGK--KELKPPSGEVPSLINPPSGCRFNPRCPFAMSVCKEKEPPLVEIN-GRKVACWL 313
>dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [Ochrobactrum
anthropi]
Length = 334
Score = 243 bits (615), Expect = 1e-63
Identities = 130/315 (41%), Positives = 193/315 (61%), Gaps = 4/315 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-PQPPG 63
+L V NL + + T RG V A + V+ + GE LG+ GESG GKS + L+G+ P PP
Sbjct: 6 LLSVDNLNVTFSTPRGNVVANNGVSLQIAGGETLGIVGESGSGKSVLCRALLGLLPSPPA 65
Query: 64 RIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR 123
I + + GR ++ L +R +R Q+ISM+FQ M++LNPV+ +G Q+ E L HR
Sbjct: 66 TIRADRLVFAGRNMLSLTAAEMRA-VRGQEISMVFQNPMSSLNPVWPIGDQISEGLRVHR 124
Query: 124 GMSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
G+ A A+ L VG+ PEI V YPH+ SGGM QR VIA A+I EP +++ADEP
Sbjct: 125 GIGNAQARSAAIAALRRVGIPSPEIRVDDYPHQWSGGMAQRAVIAMAMIGEPKLLLADEP 184
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
TTALDV +Q QI++L+ +L+++ G++++ ++HD+S+++E D +A+MYAG +VE G +
Sbjct: 185 TTALDVTIQDQILSLLMQLQRETGMAIVLVSHDMSVISETCDNVAVMYAGGVVETGRTTD 244
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
++ P+HPYT LL +IP + +KL IPG PP+L GC F RC A C+
Sbjct: 245 IFRTPSHPYTAGLLNSIPPIKGRADKLASIPGQPPDLARLGPGCPFFERCSVASAECQTR 304
Query: 302 EPKMVEVDKDHYAAC 316
+ + AC
Sbjct: 305 PVALKRLASGQQTAC 319
>sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075085|pir||B64184 oligopeptide transport
ATP-binding protein oppF - Haemophilus influenzae
(strain Rd KW20) >gi|1574675|gb|AAC22774.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppF)
[Haemophilus influenzae Rd]
Length = 332
Score = 243 bits (614), Expect = 2e-63
Identities = 126/319 (39%), Positives = 195/319 (60%), Gaps = 20/319 (6%)
Query: 7 EVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIV 66
++KN K +F +KAV DV+F L GE LG+ GESGCGKS++ R +
Sbjct: 21 KIKNDKSLFFAKPQTLKAVKDVSFKLYAGETLGVVGESGCGKSTLA-----------RAI 69
Query: 67 SGSIKIDGREIVGLPEDVLRKEIR-WQK----ISMIFQGAMNALNPVYTVGYQMIEPL-I 120
G ++ EI+ L + + ++ + W++ I MIFQ + +LNP +G + EPL I
Sbjct: 70 IGLVEASEGEILWLGKHLRKQSAKQWKETRKDIQMIFQDPLASLNPRMNIGEIIAEPLKI 129
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
Y +S + ++ + VGL P ++ RYPHE SGG QR+ IA ALI+EP ++I DE
Sbjct: 130 YQPHLSAAEVKEKVQAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALIIEPKMIICDE 189
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
P +ALDV +QAQ++NL+K L+K++GLS+IFI HDL+++ ISD++ +MY G +E+G
Sbjct: 190 PVSALDVSIQAQVVNLLKSLQKEMGLSLIFIAHDLAVVKHISDRVLVMYLGNAMELGSDV 249
Query: 241 KVYYEPAHPYTQKLLAAIPRLHEDVEK---LEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
+VY + HPYT+ L++A+P +E+ +E + G P+ +NPPSGC F RC A +
Sbjct: 250 EVYNDTKHPYTKALMSAVPIPDPKLERNKSIELLEGDLPSPINPPSGCVFRTRCLKADEN 309
Query: 298 CKEEEPKMVEVDKDHYAAC 316
C +++P + H+ AC
Sbjct: 310 CAKQKPPFTSQNNSHFVAC 328
>pir||G75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459330|gb|AAF11129.1|AE002000_5 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 346
Score = 243 bits (613), Expect = 3e-63
Identities = 132/320 (41%), Positives = 198/320 (61%), Gaps = 14/320 (4%)
Query: 5 ILEVKNLKMYYFTSRG-------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
+LEV NL+ Y+ G VKAV+D+TF + KGEV+GL GESG GK++ G L+
Sbjct: 27 LLEVNNLQKYFPIRGGLMSRVVANVKAVNDITFRVGKGEVVGLIGESGSGKTTAGRALLR 86
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
+ +P G G + +G +I L + +R R ++ +IFQ +LNP TV + E
Sbjct: 87 LIEPTG----GQVIFNGTDITKLGKSQMRDYRR--EMQIIFQDPFASLNPRMTVSDILGE 140
Query: 118 PLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
+ H + +DR + L+ VGL PE + RYPHE SGG +QR+ IA AL ++P ++
Sbjct: 141 AMQIHNLHPGKARVDRIAELLQRVGLRPEHMGRYPHEFSGGQRQRIGIARALAVDPSFIV 200
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEP +ALDV +QAQ++NL++ L+++LGL+++FI HDL ++ I D++ +MY G+I+EI
Sbjct: 201 ADEPVSALDVSIQAQVVNLIQDLQEELGLTVLFIAHDLHVVEYICDRMIVMYLGRIMEIA 260
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFI-PGSPPNLLNPPSGCRFHPRCPYAMD 296
PS ++ P HPYT+ LL+A P +++ I G P+ +NPPSGC F RC YA+
Sbjct: 261 PSRELNRNPKHPYTEALLSASPVPDPTIKRQRIILEGDIPSPINPPSGCVFRTRCRYAIA 320
Query: 297 RCKEEEPKMVEVDKDHYAAC 316
C P++ EV DH+ AC
Sbjct: 321 DCANIVPELREVSPDHFKAC 340
>dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 338
Score = 243 bits (613), Expect = 3e-63
Identities = 127/327 (38%), Positives = 202/327 (60%), Gaps = 17/327 (5%)
Query: 1 MAKKILEVKNLKMYYFTSRG-------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGF 53
M K++L+V+ LK Y+ G VKAVDDV+F + +GE + + GESGCGKS+ G
Sbjct: 1 MQKELLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGR 60
Query: 54 TLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGY 113
++ + +P G I+ G +++ L + +RK+ + + +IFQ ++NP T+
Sbjct: 61 AILRLDEP----TDGKIEFQGEDLLSLNKREMRKKRK--DLQIIFQDPYASINPRQTIRQ 114
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
+ E + + + R+ +R + ++ VGL R+PHE SGG +QR+ IA AL + P
Sbjct: 115 VLEEAMEIQKVVPRDKRGERIRELMDTVGLGSHQADRFPHEFSGGQRQRIGIARALSVNP 174
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
+++ DE +ALDV +QAQ+INL+KRL+++ L+ +FI+HDL ++ ISD++ +MY G+I
Sbjct: 175 KLIVCDEAVSALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRI 234
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFI-PGSPPNLLNPPSGCRFHPRCP 292
VEI ++ P HPYT+ LL+AIP + +K I G P+ ++PP+GCRFH RCP
Sbjct: 235 VEIADKTSLFENPQHPYTKALLSAIPVPDPEKKKERIILKGDVPSPIDPPNGCRFHTRCP 294
Query: 293 YAMDRCKEEEPKMVEVD--KD-HYAAC 316
+A D+C+ E P++ D KD H AAC
Sbjct: 295 FATDKCRTETPELRTADYMKDGHLAAC 321
>pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654573|gb|AAF93346.1| (AE004107) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 571
Score = 242 bits (612), Expect = 3e-63
Identities = 117/269 (43%), Positives = 184/269 (67%), Gaps = 3/269 (1%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
+LEVKNL++ Y + G AV +T D+++GE++G+ GESG GKS++G ++ + PPG
Sbjct: 3 LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRG 124
I G + ++G +I GL +R E+R KI IFQ M +LNP++TV +Q+ E + +
Sbjct: 63 IAGGEVYLNGEKISGLSPQAMR-EVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121
Query: 125 MSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
+S E+A RA+ ++ VG+ PE + +YPH+ SGGM+QRVVIA AL EPD++IADEPT
Sbjct: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
TALDV +Q QI+NL++ L KK + + +THD+ +++ ++D++A+MY G +VE GP+ KV
Sbjct: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
Query: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEFI 271
P HPYT+ L++A+PR +++ +
Sbjct: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLV 270
Score = 182 bits (458), Expect = 4e-45
Identities = 97/264 (36%), Positives = 167/264 (62%), Gaps = 15/264 (5%)
Query: 5 ILEVKNLKMYYFTS-------RGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
+L+V+N+ + + T R V+A ++V+F + +GE GL GESG GKS+I + G
Sbjct: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
+ QP +G + +G ++ L + R+ +R Q + M+FQ ++NP + + E
Sbjct: 362 LYQPN----AGRVTFEGIDLTALKSEHERRPLRRQ-MQMVFQNPYTSMNPRMKIFDIIAE 416
Query: 118 PLIYHRGMSREDALDRAM--KYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
P+ +H+ ++R ++ R + LE VGL +YPHE SGG +QR+ IA AL P +
Sbjct: 417 PIRFHK-LTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRL 475
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
+I DEPT+ALDV VQAQI+NL+K L+ +L L+M+FI+HDL ++ ++ D++ +M G ++E
Sbjct: 476 LICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLE 535
Query: 236 IGPSEKVYYEPAHPYTQKLLAAIP 259
+ P+E+++ +P H Y++KL++ +P
Sbjct: 536 VAPTEQLFTDPQHEYSKKLISLMP 559
>gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 331
Score = 242 bits (611), Expect = 4e-63
Identities = 131/318 (41%), Positives = 198/318 (62%), Gaps = 4/318 (1%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ + VKNL + Y + G +K + +V+ D+ + +++G+AGESG GKS++ T+MG
Sbjct: 1 MSEISISVKNLNVGYLSDYGIIKVLRNVSIDIPESKIIGVAGESGSGKSTLATTIMGFVN 60
Query: 61 PPGRIVSGSIKIDGR-EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
PP + GSI +D + +I+ + D L K IR IS + Q A N+LNP+ V + +
Sbjct: 61 PPLYVERGSIIVDSKYDILSMSRDELNK-IRGSVISYVPQAAQNSLNPIRKVK-ETFTDI 118
Query: 120 IYHRGMSREDALDRAMKYLELVGL-DPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
+ +GM +D LE VGL D +++ YP +LSGGMKQRVVIA +L+L P I+I
Sbjct: 119 LKAKGMDYYANIDVVYNTLEEVGLTDRQVLDMYPFQLSGGMKQRVVIAISLLLNPKILIM 178
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPTT LDVVVQ +I+ L+K+++K+ L+++ I+HD+++L +ISD IA+MY G+IVE G
Sbjct: 179 DEPTTGLDVVVQYEILKLLKKIQKEKDLTLVVISHDIAMLFQISDYIAVMYGGQIVEYGK 238
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
+ E HPYT LL+++P + +KL IPG + P GC F RCP+ C
Sbjct: 239 YNTLLEEAYHPYTYLLLSSVPTVRSRGKKLPRIPGDFEGFIRYPKGCVFSSRCPFVTSTC 298
Query: 299 KEEEPKMVEVDKDHYAAC 316
KE P++V DK + C
Sbjct: 299 KEVPPQIVAYDKFGFYKC 316
>pir||H72366 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981043|gb|AAD35615.1|AE001728_16 (AE001728)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 389
Score = 242 bits (611), Expect = 4e-63
Identities = 143/385 (37%), Positives = 215/385 (55%), Gaps = 70/385 (18%)
Query: 4 KILEVKNLKMYYFTSRG--------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
K +EV +L+ Y+ +G VKAVDD++F +EKG+ L GESGCGK++ T+
Sbjct: 2 KTIEVLSLRKYFPIRKGFLVKKIVGYVKAVDDISFSVEKGKTFALVGESGCGKTTTAKTI 61
Query: 56 MGMPQPP-GR-IVSGSI----------------------------KIDGREIVGLPEDVL 85
+ + P GR ++ G K+ +IV + EDV
Sbjct: 62 LRLTNPTAGRVVIDGDDTTYYFMKRRDAENYLETTYVDIFREMREKLSPDQIVDVLEDVD 121
Query: 86 RK--EIRWQ--------------------------KISMIFQGAMNALNPVYTVGYQMIE 117
+K EI ++ KI ++FQ M++LNP TVG + E
Sbjct: 122 KKYAEIFFKEAKESEEKFYQILLDDIDEKRMKFRRKIQIVFQDPMSSLNPRMTVGDILTE 181
Query: 118 PLIYHR-GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
P+++H +RE+A+D A L+ VGL + RYPH+ SGG +QR+ IA A+ + P+IV
Sbjct: 182 PILFHGLAKTREEAVDMAKDLLKSVGLKEYHLERYPHQFSGGQRQRIAIARAISINPEIV 241
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
I DEPT +LDV VQAQ+INL +L+++ G + +FI+HDL ++ IS ++ IMY G+IVE+
Sbjct: 242 ILDEPTASLDVSVQAQVINLFLKLQEEKGFTYLFISHDLGLVRFISHEVGIMYLGRIVEM 301
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLE---FIPGSPPNLLNPPSGCRFHPRCPY 293
G +++++ P HPYTQ LL+A+P VE+ + G P+ +N P+GC FHPRCPY
Sbjct: 302 GNTDEIFDNPLHPYTQALLSAVPVPDPKVERTRKRIILRGGVPSPINRPTGCFFHPRCPY 361
Query: 294 AMDRCKEEEPKMVEVDKDHYAACWL 318
M C++E P M E+ H+ AC L
Sbjct: 362 KMPVCEKEYPVMKEISPGHWVACHL 386
>gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-binding; YkfD
[Halobacterium sp. NRC-1]
Length = 445
Score = 242 bits (610), Expect = 6e-63
Identities = 127/297 (42%), Positives = 193/297 (64%), Gaps = 13/297 (4%)
Query: 2 AKKILEVKNLKMYYFT----SRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
++ ++EV +LK +Y S PVKAVD V F++++GE LGL GESG GK+++G TL+
Sbjct: 16 SQPLVEVTDLKKHYGDGGRFSGPPVKAVDGVNFEIQEGETLGLVGESGSGKTTLGRTLIQ 75
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQK-ISMIFQGAMNALNPVYTVGYQMI 116
+ G++ DGR+I L L++ W+K ++FQ ++LN T+G +
Sbjct: 76 LETA----TEGTVSFDGRDITKLTGSDLKQ---WRKNAQIVFQDPDSSLNDRMTIGEIVR 128
Query: 117 EPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
EPL H S + DR + L VGL + YRYPH+ SGG +QR+ IA AL LEP+ +
Sbjct: 129 EPLDAHDWNSPAERRDRVKELLSSVGLQADHYYRYPHQFSGGQRQRIGIARALALEPEFM 188
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
+ DEP +ALD VQA+I+NL++ L+ + GL+ +FI HDLS++ I D++A+MY GKI+EI
Sbjct: 189 VLDEPVSALDASVQAKILNLLEDLQDEFGLTYLFIAHDLSVVRHICDRVAVMYLGKIMEI 248
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEF-IPGSPPNLLNPPSGCRFHPRCP 292
G +E++Y + +PYT+ LL+AIPR +++ +PG+PP+ NPP+GC+F RCP
Sbjct: 249 GETEELYADAKNPYTRSLLSAIPRPDPTIDRNRITLPGAPPSPRNPPAGCQFSTRCP 305
>emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport system, ATP-binding
protein appD [Thermoplasma acidophilum]
Length = 298
Score = 242 bits (610), Expect = 6e-63
Identities = 125/285 (43%), Positives = 188/285 (65%), Gaps = 2/285 (0%)
Query: 32 LEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRW 91
+ KG +LG+AGESG GKS++ + + PG I SG + +D ++I+ + + LR+ IR
Sbjct: 5 VRKGIILGIAGESGSGKSTLAQAIYRSLKYPGEITSGQVYLDDQDILRINGEDLRR-IRA 63
Query: 92 QKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRY 151
+ S I Q AMNALNPV + YQ + LI H G+ E DR +++V L ++ +
Sbjct: 64 TRFSFIPQAAMNALNPVKRIRYQFYDLLIAH-GLQPEKNEDRIQAAIKMVRLRENVLESF 122
Query: 152 PHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFI 211
PHELSGGM+QRVVIA +L+L PD+VI DEPTT LDV+VQ +I+ +K ++++ GL+MIFI
Sbjct: 123 PHELSGGMRQRVVIAMSLLLRPDLVILDEPTTGLDVLVQHEILKDLKAIQRQSGLTMIFI 182
Query: 212 THDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFI 271
THDLSIL EI+D+IA++YAG+IVE GP +++ +P HPY LL ++PR+ +
Sbjct: 183 THDLSILYEIADEIAMIYAGEIVEFGPRDEMLNDPQHPYNFLLLRSMPRIGAKRGTGYRL 242
Query: 272 PGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAAC 316
G+P N +GC+F+ RCP+++ +C + P++ D H+ C
Sbjct: 243 IGNPGNFREDFNGCQFYTRCPFSVPQCVSKHPELTSDDGRHFRRC 287
>pir||B69856 oligopeptide transport ATP-binding protein homolog ykfD - Bacillus
subtilis >gi|2632021|emb|CAA05580.1| (AJ002571) YkfD
[Bacillus subtilis] >gi|2633654|emb|CAB13157.1| (Z99110)
similar to oligopeptide ABC transporter (permease)
[Bacillus subtilis]
Length = 327
Score = 240 bits (605), Expect = 2e-62
Identities = 137/304 (45%), Positives = 189/304 (62%), Gaps = 16/304 (5%)
Query: 5 ILEVKNLKMYYFTSRG-PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPG 63
+LEV LKM++ + VKAVD VTF + +GE GL GESGCGKS++G LM + QP
Sbjct: 6 LLEVSQLKMHFDAGKKRTVKAVDGVTFQIREGETFGLVGESGCGKSTLGRVLMRLYQP-- 63
Query: 64 RIVSGSIKIDGREIVGLPEDVLRKEIRW-QKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
GS+ G + L E +++ + +K+ MIFQ +LNP TV ++EP+ H
Sbjct: 64 --TEGSVTYRGTNLHALSE---KEQFAFNRKLQMIFQDPYASLNPRMTVREIILEPMEIH 118
Query: 123 RGMSREDA-LDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
+ A L + LE VGL P+ RYPHE SGG +QR+ IA AL L P+ ++ADEP
Sbjct: 119 NLYNTHKARLSVVDELLEAVGLHPDFGSRYPHEFSGGQRQRIGIARALSLNPEFIVADEP 178
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
+ALDV VQAQ++NL+KRL+K+ GL+ +FI HDLS++ ISD+I +MY G ++EI S
Sbjct: 179 ISALDVSVQAQVVNLLKRLQKEKGLTFLFIAHDLSMVKHISDRIGVMYLGHMMEITESGT 238
Query: 242 VYYEPAHPYTQKLLAAIPRLH---EDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
+Y EP HPYT+ LL++IP ED + + G P+ +NPPSGC F RCP +RC
Sbjct: 239 LYREPLHPYTKALLSSIPIPDPELEDKRERILLKGELPSPVNPPSGCVFRTRCP---ERC 295
Query: 299 KEEE 302
E
Sbjct: 296 LNVE 299
>dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [Ochrobactrum
anthropi]
Length = 335
Score = 238 bits (602), Expect = 5e-62
Identities = 125/296 (42%), Positives = 187/296 (62%), Gaps = 13/296 (4%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGLP 81
V+AVD V+ ++ GE LGL GESG GKS+IG ++G+ +P +SG+I DGR
Sbjct: 34 VRAVDGVSLSVQAGETLGLVGESGSGKSTIGRAILGLNEP----LSGTIHFDGRPTHS-- 87
Query: 82 EDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLELV 141
R+++R +++ M+FQ ++LNP +G + E L +H + ++D + L LV
Sbjct: 88 ----RRDLR-RRMQMVFQDPYSSLNPRLKIGDAIGEVLRFHSIVPKQDVDREVRRLLSLV 142
Query: 142 GLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKRLK 201
GL + R P E+SGG +QR IA AL L PD ++ DEP ALDV +QAQI+NL+ L+
Sbjct: 143 GLSAAMAERRPREMSGGQRQRAGIARALALRPDFLVLDEPVAALDVSIQAQILNLLTDLR 202
Query: 202 KKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPRL 261
++LGL+M+FI H L ++ +SD+IA++Y GKI+E+GP+ V+ HPYT+ LL+A+P +
Sbjct: 203 QELGLTMLFIAHGLGVVRHMSDRIAVLYLGKIMEVGPAHAVFESSRHPYTKALLSAVPEI 262
Query: 262 H-EDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAAC 316
+ ++ G P+ LN PSGCRF RCP A D CK + P+ V V DH++ C
Sbjct: 263 NLVKRQRPPVTQGDVPSPLNVPSGCRFRTRCPVAQDICKTQPPE-VPVGPDHFSRC 317
>gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis]
>gi|2633501|emb|CAB13004.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 305
Score = 238 bits (600), Expect = 9e-62
Identities = 122/268 (45%), Positives = 179/268 (66%), Gaps = 6/268 (2%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +K+LE+K+LK ++ T RG VKAVDD++FD+ KGE LGL GESGCGKS+ G +++ + +
Sbjct: 1 MTEKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYE 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
G + +G + G E +K+ MIFQ +LNP TV + E L
Sbjct: 61 A----TDGEVLFNGENVHGRKSRKKLLEFN-RKMQMIFQDPYASLNPRMTVADIIAEGLD 115
Query: 121 YHR-GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H+ ++++ + R + LE VGL+ E RYPHE SGG +QR+ IA AL ++P+ +IAD
Sbjct: 116 IHKLAKTKKERMQRVHELLETVGLNKEHANRYPHEFSGGQRQRIGIARALAVDPEFIIAD 175
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EP +ALDV +QAQ++NLMK L+K+ GL+ +FI HDLS++ ISD+I +MY GK+VE+ P+
Sbjct: 176 EPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPA 235
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEK 267
+++Y P HPYT+ LL+AIP D E+
Sbjct: 236 DELYENPLHPYTKSLLSAIPLPDPDYER 263
>sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|98478|pir||E38447 oligopeptide transport ATP-binding
protein oppF - Bacillus subtilis
>gi|143608|gb|AAA62692.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 308
Score = 236 bits (597), Expect = 2e-61
Identities = 121/268 (45%), Positives = 179/268 (66%), Gaps = 6/268 (2%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+ +K+LE+K+LK ++ T RG VKAVDD++FD+ KGE LGL GESGCGKS+ G +++ + +
Sbjct: 4 LTEKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYE 63
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
G + +G + G E +K+ MIFQ +LNP TV + E L
Sbjct: 64 A----TDGEVLFNGENVHGRKSRKKLLEFN-RKMQMIFQDPYASLNPRMTVADIIAEGLD 118
Query: 121 YHR-GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H+ ++++ + R + LE VGL+ E RYPHE SGG +QR+ IA AL ++P+ +IAD
Sbjct: 119 IHKLAKTKKERMQRVHELLETVGLNKEHANRYPHEFSGGQRQRIGIARALAVDPEFIIAD 178
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EP +ALDV +QAQ++NLMK L+K+ GL+ +FI HDLS++ ISD+I +MY GK+VE+ P+
Sbjct: 179 EPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPA 238
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEK 267
+++Y P HPYT+ LL+AIP D E+
Sbjct: 239 DELYENPLHPYTKSLLSAIPLPDPDYER 266
>emb|CAA39791.1| (X56347) OppF [Bacillus subtilis]
Length = 307
Score = 236 bits (597), Expect = 2e-61
Identities = 121/268 (45%), Positives = 179/268 (66%), Gaps = 6/268 (2%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+ +K+LE+K+LK ++ T RG VKAVDD++FD+ KGE LGL GESGCGKS+ G +++ + +
Sbjct: 4 LTEKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYE 63
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
G + +G + G E +K+ MIFQ +LNP TV + E L
Sbjct: 64 A----TDGEVLFNGENVHGRKSRKKLLEFN-RKMQMIFQDPYASLNPRMTVADIIAEGLD 118
Query: 121 YHR-GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H+ ++++ + R + LE VGL+ E RYPHE SGG +QR+ IA AL ++P+ +IAD
Sbjct: 119 IHKLAKTKKERMQRVHELLETVGLNKEHANRYPHEFSGGQRQRIGIARALAVDPEFIIAD 178
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EP +ALDV +QAQ++NLMK L+K+ GL+ +FI HDLS++ ISD+I +MY GK+VE+ P+
Sbjct: 179 EPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVELAPA 238
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEK 267
+++Y P HPYT+ LL+AIP D E+
Sbjct: 239 DELYENPLHPYTKSLLSAIPLPDPDYER 266
>gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 362
Score = 235 bits (593), Expect = 6e-61
Identities = 120/303 (39%), Positives = 199/303 (65%), Gaps = 5/303 (1%)
Query: 5 ILEVKNLKMYYFTSRGPV-KAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPG 63
ILEV NL + Y + KAV+DV+F +EKGE+LG+ GESG GK+++ ++ +PPG
Sbjct: 45 ILEVHNLNVIYDEGNSRIIKAVNDVSFGVEKGEILGIIGESGSGKTTLISAILRAIRPPG 104
Query: 64 RIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR 123
+I+SG + +G +I + D RK + W+ IS + Q + NALNPV + I H
Sbjct: 105 KIISGKVIFNGMDIFSMTIDEFRK-LLWKDISYVPQASQNALNPVLPISEIFYHEAISHG 163
Query: 124 GMSREDALDRAMKYLELVGLDPEIVYR-YPHELSGGMKQRVVIATALILEPDIVIADEPT 182
++ ++RA + L+LVGLDP V + YP +LSGGMKQRV+IA +L+L P +++ DEPT
Sbjct: 164 EADKKRVIERASELLKLVGLDPARVLKMYPFQLSGGMKQRVMIALSLLLNPKLILMDEPT 223
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
+ALD++ Q ++ L+K + +++G++++++THD+ +A+I++++ +MY G ++E G +E++
Sbjct: 224 SALDMLNQELLLKLIKNINQEMGVTIVYVTHDILNIAQIANRLLVMYKGYVMEEGKTEEI 283
Query: 243 YYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEE 302
P +PYT L+++IP L +V+ + +P P L++ GC F RC A RCKEE
Sbjct: 284 IKSPLNPYTSLLVSSIPSLKGEVKVIN-VPLDEP-LVSKEKGCPFLARCSKAFGRCKEEL 341
Query: 303 PKM 305
P++
Sbjct: 342 PEI 344
>gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis]
Length = 311
Score = 232 bits (586), Expect = 4e-60
Identities = 120/266 (45%), Positives = 177/266 (66%), Gaps = 6/266 (2%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
+K++EVKN+K ++ S G VKAV+D++FD+ +GE GL GESGCGKS+ G T++ +
Sbjct: 6 EKLIEVKNVKQHFDVSGGVVKAVNDISFDIYRGETFGLVGESGCGKSTTGRTIIRLYDA- 64
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
+G + DG + G K+ +K+ MIFQ +LNP TVG + E + H
Sbjct: 65 ---TAGEVLFDGENVHGKKSRAELKKFN-RKMQMIFQDPYASLNPRMTVGDIIAEGIDIH 120
Query: 123 R-GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
S+++ +DR + L VGL+ E R+PHE SGG +QR+ IA AL +EP+ +IADEP
Sbjct: 121 GLAKSKKERMDRVHELLNTVGLNKEHANRFPHEFSGGQRQRIGIARALAVEPEFIIADEP 180
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
+ALDV +QAQ++NL+K+L+K+ GL+ +FI HDLS++ ISD+I +MY G+IVE+ SE+
Sbjct: 181 ISALDVSIQAQVVNLLKKLQKEKGLTYLFIAHDLSMVKYISDRIGVMYRGQIVELTTSEE 240
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEK 267
+Y P HPYT+ LL+AIP D E+
Sbjct: 241 LYANPVHPYTKSLLSAIPLPDPDYER 266
>pir||T03431 probable transport protein accB - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153178|gb|AAC17198.1| (AF010180) AccB
[Agrobacterium tumefaciens]
Length = 321
Score = 232 bits (585), Expect = 5e-60
Identities = 124/301 (41%), Positives = 187/301 (61%), Gaps = 17/301 (5%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLM-GMPQPPGRIVSGSIKID-GREIVG 79
+ ++ V+F L+ G+ LGL GESGCGKS + + +P+ + G+I++D G + G
Sbjct: 28 ITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQ-TGGTIELDSGPKADG 86
Query: 80 LPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLE 139
P I+MI+Q ++LNPV+++GY + L H+G+ DA AM+ LE
Sbjct: 87 KPA-----------IAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAMRLLE 135
Query: 140 LVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLM 197
VG+D + YPHE SGGM QRV+IA AL +P ++IADEPTTALDV QAQI++L+
Sbjct: 136 RVGIDRAKSRLRSYPHEYSGGMNQRVMIAHALAAKPKLMIADEPTTALDVTTQAQILHLL 195
Query: 198 KRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAA 257
+ L+ + G++++ ++HDL ++A ++D+ A+MY GKIVE P ++ AHPY + L+
Sbjct: 196 EELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLERAAHPYARALIGC 255
Query: 258 IPRLH-EDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAAC 316
+P + +D+E IPGS P L N P+GC +HPRCP A ++C P V V H AAC
Sbjct: 256 MPTIDADDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFHDAAC 315
Query: 317 W 317
+
Sbjct: 316 Y 316
>gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter ATPase subunit [uncultured
proteobacterium EBAC31A08]
Length = 532
Score = 231 bits (584), Expect = 6e-60
Identities = 124/261 (47%), Positives = 175/261 (66%), Gaps = 5/261 (1%)
Query: 4 KILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPG 63
KILEV +L + + T G AVD+++FD+EK + L L GESG GKS +++ + Q P
Sbjct: 3 KILEVSDLSINFSTRDGLFNAVDNISFDIEKNQTLALVGESGSGKSVTAMSILQLLQKPQ 62
Query: 64 RIVS--GSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
S SIK +G EI+ + L +R ISMIFQ M +LNP + VG Q+ E ++
Sbjct: 63 ASYSKESSIKFNGDEIINAKYEKLLS-LRGNIISMIFQEPMTSLNPYHRVGNQITESILL 121
Query: 122 HRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H S++DA+D A K + LV +D Y YPHELSGG +QRV+IA AL+ +P+++IAD
Sbjct: 122 HSKSSKKDAIDEAKKLMALVEIDDVERRFYAYPHELSGGQRQRVMIAMALVNKPELLIAD 181
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV +QAQI++LM +LK +LG+S++FITHDL ++ E SD + +M GKIVE G +
Sbjct: 182 EPTTALDVTIQAQILDLMSKLKNELGMSILFITHDLGLVQEFSDNVCVMKNGKIVEQGNT 241
Query: 240 EKVYYEPAHPYTQKLLAAIPR 260
+V+ P+H YT+KLL A P+
Sbjct: 242 VEVFNNPSHEYTKKLLDAEPQ 262
Score = 175 bits (438), Expect = 9e-43
Identities = 97/259 (37%), Positives = 156/259 (59%), Gaps = 13/259 (5%)
Query: 5 ILEVKNLKMYY------FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM 58
I+E+ +L +YY F + AV + +F + K +GL GESG GKS++G + +
Sbjct: 274 IIEINDLNVYYSIPSTNFFKKNTFHAVKNTSFSIYKNTTIGLVGESGSGKSTLGKAIANL 333
Query: 59 PQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
G+IK +GR+I + KE++ + + ++FQ +L+P TVG + E
Sbjct: 334 VS-----YKGNIKFEGRDINSNSQKE-NKELK-KNVQIVFQDPYGSLSPRMTVGEIVGEG 386
Query: 119 LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
L H +++++ +R K L VG++ +YPHE SGG +QR+ IA +LI+ P +I
Sbjct: 387 LGVHFKLTKKERDERIDKVLSDVGIEIVAKNKYPHEFSGGQRQRIAIARSLIMNPAFMIL 446
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPT+ALD +Q Q+I+L+K ++ + GL+ +FI+HDL ++ +SD I +M G+IVE GP
Sbjct: 447 DEPTSALDRSIQIQVIDLLKEIQNEYGLTYLFISHDLKVIRSMSDFIFVMKNGEIVESGP 506
Query: 239 SEKVYYEPAHPYTQKLLAA 257
S KV+ P YT+KLL+A
Sbjct: 507 SHKVFESPEQDYTKKLLSA 525
>gi|10954941 Probable accB [Agrobacterium tumefaciens]
>gi|6498294|dbj|BAA87746.1| (AB016260) Probable accB
[Agrobacterium tumefaciens]
Length = 321
Score = 231 bits (583), Expect = 8e-60
Identities = 123/305 (40%), Positives = 184/305 (60%), Gaps = 25/305 (8%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLM-----GMPQPPGRI-VSGSIKIDGR 75
+ ++ V+F L+ G+ LGL GESGCGKS + + G+ Q G I ++ K DG+
Sbjct: 28 ITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGTIELNSGPKADGK 87
Query: 76 EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAM 135
I+MI+Q ++LNPV+++GY + L H+G+ DA AM
Sbjct: 88 PA----------------IAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAM 131
Query: 136 KYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQI 193
+ LE VG+D + YPHE SGGM QRV+IAT + +P ++IADEPTTALDV QAQI
Sbjct: 132 RLLERVGIDRAKSRLRSYPHEFSGGMNQRVMIATRSLAKPKLMIADEPTTALDVTTQAQI 191
Query: 194 INLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQK 253
++L++ L+ + G++++ ++HDL ++A ++D+ A+MY GKIVE P ++ AHPY +
Sbjct: 192 LHLLEELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLEHAAHPYARA 251
Query: 254 LLAAIPRLH-EDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDH 312
L+ +P + +D+E IPGS P L N P+GC +HPRCP A ++C P V V H
Sbjct: 252 LIGCMPTIDADDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFH 311
Query: 313 YAACW 317
AAC+
Sbjct: 312 DAACY 316
>pir||T34760 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402247|emb|CAA20183.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 496
Score = 231 bits (582), Expect = 1e-59
Identities = 121/302 (40%), Positives = 180/302 (59%), Gaps = 12/302 (3%)
Query: 20 GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVG 79
G V+AVD + F++ GE LG+ GESGCGKS++G + + +P +G ++ G++I
Sbjct: 61 GAVRAVDGIDFEVRSGETLGVVGESGCGKSTMGRLITRLLEP----TAGKVEFQGKDITH 116
Query: 80 LPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLE 139
L +R R + MIFQ ++LNP +T+G + P + L
Sbjct: 117 LGVGGMRPLRR--DVQMIFQDPYSSLNPRHTIGTIVSAPFKLQGVQPEGGVKKEVQRLLS 174
Query: 140 LVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKR 199
+VGL+PE RYPHE SGG +QR+ IA AL L P +V+ADEP +ALDV +QAQ++NL+
Sbjct: 175 VVGLNPEHYNRYPHEFSGGQRQRIGIARALALNPRLVVADEPVSALDVSIQAQVVNLLDD 234
Query: 200 LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIP 259
L+++LGL+ + I HDLS++ +SD+IA+MY GKI+E+ + +Y P HPYT+ L++A+P
Sbjct: 235 LQQELGLTYVIIAHDLSVVRHVSDRIAVMYLGKIMELADRDLLYKTPMHPYTKALMSAVP 294
Query: 260 -----RLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYA 314
R E++ + G P+ + PPSGCRFH RC A C EP + E+
Sbjct: 295 IPDPARRGAKSERI-LLKGDVPSPIAPPSGCRFHTRCWKATQVCTTTEPPLKELRPGQQV 353
Query: 315 AC 316
AC
Sbjct: 354 AC 355
>pir||C72452 probable peptide transport ATP-binding protein APE2263 - Aeropyrum
pernix (strain K1) >gi|5105964|dbj|BAA81275.1|
(AP000064) 347aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 231 bits (582), Expect = 1e-59
Identities = 118/295 (40%), Positives = 178/295 (60%), Gaps = 8/295 (2%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGLP 81
V+AVD V + +GEVL + GESGCGK+++G ++G+ +P G+I G + P
Sbjct: 41 VRAVDGVDLGIREGEVLAIVGESGCGKTTLGKAIVGIEEPS----DGAIYYRGELLT--P 94
Query: 82 EDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLELV 141
+ R +K+ M+FQ +L+P+ VG Q+ EPL+ H E+A RA++ LE V
Sbjct: 95 HRLARDRRLRRKLQMVFQDPYKSLDPLMPVGDQVAEPLVIHGLARGEEARRRAVEMLETV 154
Query: 142 GLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKR 199
GL P E +R PH+LSGG +QRV IA L+LEP++++ADEP + +DV ++A I++L+
Sbjct: 155 GLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEVIVADEPVSMIDVSMRASILDLIMD 214
Query: 200 LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIP 259
++ G +++ ITHD+++ ++D+IA+MY GKIVE+G V P HPYT L+ + P
Sbjct: 215 YHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVEVGEPRSVIENPRHPYTAALVTSTP 274
Query: 260 RLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYA 314
+ I G P+ + P GCRFHPRCP A C+ EP +VE YA
Sbjct: 275 SISRRRPPRFPISGEVPSAVAIPPGCRFHPRCPLASSLCRSREPALVEEGGRLYA 329
>pir||F71483 probable dipeptide transport - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329143|gb|AAC68285.1| (AE001339) ABC
Transport ATPase [Chlamydia trachomatis]
Length = 321
Score = 230 bits (581), Expect = 1e-59
Identities = 125/321 (38%), Positives = 192/321 (58%), Gaps = 8/321 (2%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A+ +L+VKNL + +R AVD ++FD+ G+ L + GESG GKS +LM +
Sbjct: 3 AQPLLQVKNLSVSLNRNRVSFLAVDSLSFDVFPGQTLAIIGESGSGKSITAQSLMQLLPE 62
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
+SG + ++ ++ K + KISMIFQ + + +PV+T+ Q E +
Sbjct: 63 ENFSLSGEALFNKENLLDR-KNTNAKVLFGSKISMIFQNPLASFDPVFTIEQQFHEVIRT 121
Query: 122 HRGMSREDALDRAMKYLELVGL-DPE-IVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H G+S + A ++ + L G DPE + YPHELSGGM QR+ IA L+ PD++IAD
Sbjct: 122 HLGISNKMAHEQMLAVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIAD 181
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV VQ QI+ L+K L+KK G+S++ ITHD+ ++AE++D + ++YAG++ E
Sbjct: 182 EPTTALDVSVQYQILQLLKTLQKKTGMSLLIITHDMGVVAEMADDVFVLYAGRMAEYSSV 241
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIP--GSPPNLLNPPSGCRFHPRCPYAMDR 297
+++++ PAHPYT+ LLA+ P + F+P G PP+ + P GC + PRC A
Sbjct: 242 QEIFHSPAHPYTEDLLASRP---SQYRQQTFVPIAGQPPHYTSLPKGCCYSPRCRKAQPI 298
Query: 298 CKEEEPKMVEVDKDHYAACWL 318
C E+ P + ++ H CWL
Sbjct: 299 CFEKSPDSLSLNDHHRVRCWL 319
>pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei
>gi|1491738|emb|CAA62801.1| (X91502) ABC transporter
[Methanosarcina mazei]
Length = 317
Score = 229 bits (579), Expect = 2e-59
Identities = 126/308 (40%), Positives = 192/308 (61%), Gaps = 10/308 (3%)
Query: 4 KILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPG 63
K+LEVKNL++ + + V A+ ++F + + E L L GE+GCGKS +M + PP
Sbjct: 8 KLLEVKNLQVSFLGIK-TVTALSGISFSIGERETLALVGETGCGKSVAAHAIMRL-LPPE 65
Query: 64 RIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR 123
V G++++ GR ++GL E + EIR ++I +IFQ ALNPVY++G+Q+ EPL HR
Sbjct: 66 SGVKGTVELRGRNLLGLSEKEMT-EIRGKEIGIIFQNPSLALNPVYSIGHQLAEPLRLHR 124
Query: 124 GMSREDALDRAMKYLELVGL--DPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
++ AL RA + L+ +G EI+ YP SGGM QR +IA + IL+P ++IADEP
Sbjct: 125 KEKKKKALSRAAEALKNMGFANTGEIINYYPSWCSGGMNQRFLIAASTILDPALLIADEP 184
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
LD +++ +KRLK++ +++ I+HDL + ++D++A+MYAG+IVEI S
Sbjct: 185 GKGLDRSCLSELEAGLKRLKEEKKTALLLISHDLGFVRNLADRVAVMYAGEIVEIADSSG 244
Query: 242 VYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEE 301
++ EP HPYT+ LL ++P + IPG P L PSGCRFHPRCP C E
Sbjct: 245 IFEEPLHPYTKGLLNSLPE-----KGFIPIPGFSPPLSRLPSGCRFHPRCPLRKRCCIEN 299
Query: 302 EPKMVEVD 309
+P+++E +
Sbjct: 300 QPEIIETN 307
>gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding; DppF
[Halobacterium sp. NRC-1]
Length = 943
Score = 229 bits (579), Expect = 2e-59
Identities = 126/308 (40%), Positives = 188/308 (60%), Gaps = 29/308 (9%)
Query: 21 PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGL 80
PVKAVD V D+ +GE LGL GESGCGKS+ G +++ + +P G + G ++ L
Sbjct: 531 PVKAVDGVDLDVYEGETLGLVGESGCGKSTTGRSILRLVEP----TDGRVVFAGDDVTDL 586
Query: 81 PEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH-------RGMSREDALDR 133
+D LR + MIFQ +++L+P ++G ++EPL H +R+ DR
Sbjct: 587 NDDELRATRT--DMQMIFQDPLSSLDPRQSIGDTILEPLQIHDLPANPGAQSTRQARRDR 644
Query: 134 AMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQI 193
+ ++ VGLDP RYPHELSGG +QRV IA AL ++PD ++ADEP +ALDV VQAQI
Sbjct: 645 VIDLMDAVGLDPSQYDRYPHELSGGQRQRVGIARALAVDPDFIVADEPVSALDVSVQAQI 704
Query: 194 INLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQK 253
+NL++ L+ + L+ +FI HDLS++ I D+IA+MY GKIVE + +++ P HPYT+
Sbjct: 705 LNLLEDLQDEFDLTYLFIAHDLSVVRHICDRIAVMYLGKIVETAQTAQLFSTPKHPYTKS 764
Query: 254 LLAAIPRLHEDVEKLE------FIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVE 307
LL++IP D + L + G P+ ++PPSGCRF RCP + P ++
Sbjct: 765 LLSSIP----DPDPLATTDDRIILEGDVPSPIDPPSGCRFRTRCPSVI------PPADLD 814
Query: 308 VDKDHYAA 315
+++D + A
Sbjct: 815 IEQDAFRA 822
Score = 205 bits (516), Expect = 6e-52
Identities = 112/265 (42%), Positives = 165/265 (62%), Gaps = 27/265 (10%)
Query: 76 EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR------------ 123
++ PE +R ++R ++ MIFQ M +LNP TVG Q+ E L HR
Sbjct: 214 DLTAAPERAMR-DLRGGEMGMIFQDPMTSLNPSLTVGEQVAESLRLHRYGEQPTDSWLNG 272
Query: 124 -------GMSREDALDRAMKYLELVGL-DPEI-VYRYPHELSGGMKQRVVIATALILEPD 174
G + E + + L+ VG+ +PE + YPHE SGGM+QRV+IA AL P
Sbjct: 273 LRAAISRGDTDEQVVADVVDVLDAVGIPEPETRLDEYPHEFSGGMRQRVLIAIALACRPR 332
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
++IADEPTTALDV +QAQI++ + L+ + G+S++FITHDL ++AE D++A+MYAG+IV
Sbjct: 333 LLIADEPTTALDVTIQAQILDRISDLQDEFGMSVLFITHDLGVVAETCDRVAVMYAGEIV 392
Query: 235 EIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYA 294
E GP E++++ P+HPYT LL +IPR +D ++L I G+ P+L++ PSGC F RCP+A
Sbjct: 393 EEGPVEEIFHNPSHPYTYALLESIPR--DDADRLHPIEGNVPDLIDLPSGCHFEARCPWA 450
Query: 295 MDRCKEEEPKMVE---VDKDHYAAC 316
D C ++ +E D H + C
Sbjct: 451 SDACVGDDIPYMEHGPDDVSHRSKC 475
>sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDP
>gi|7445758|pir||G64901 ABC-type transport protein b1484
- Escherichia coli >gi|1742424|dbj|BAA15139.1| (D90789)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1742435|dbj|BAA15149.1| (D90790)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1787759|gb|AAC74557.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 328
Score = 229 bits (577), Expect = 4e-59
Identities = 120/320 (37%), Positives = 191/320 (59%), Gaps = 4/320 (1%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-P 59
M + +L+++ L + + G V A+++V+ + +GE++GL GESG GKS +M + P
Sbjct: 1 MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLP 60
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
+ G I + G +++ E LR + R +++MIFQ M ALNP +G QM++ +
Sbjct: 61 TGSYCVHRGQISLLGEDVLNAREKQLR-QWRGARVAMIFQEPMTALNPTRRIGLQMMDVI 119
Query: 120 IYHRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
+H+ +SR +A +A+ LE + + E++ RYP ELSGGM+QRV+IA A EP ++I
Sbjct: 120 RHHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLII 179
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEPTTALDV VQ Q++ L+K + G +++FI+HD+++++++ D + +MYAG ++E G
Sbjct: 180 ADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESG 239
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
+ V + P HPYT LL P + L IPG+ PNL + P GC F RC A +
Sbjct: 240 VTADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGTVPNLTHLPDGCAFRDRCYAAGAQ 299
Query: 298 CKEEEPKMVEVDKDHYAACW 317
C+ D + ACW
Sbjct: 300 CENVPALTACGDNNQRCACW 319
>gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-binding; AppF
[Halobacterium sp. NRC-1]
Length = 440
Score = 228 bits (576), Expect = 6e-59
Identities = 117/299 (39%), Positives = 183/299 (61%), Gaps = 14/299 (4%)
Query: 2 AKKILEVKNLKMYY-------FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFT 54
A+ ++ V LK +Y T G V+AVD V+F++ GE LG+ GESGCGKS++ +
Sbjct: 13 AESLMRVDGLKKHYPITEGVLRTEVGRVRAVDGVSFEVRAGETLGIVGESGCGKSTVAES 72
Query: 55 LMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQ 114
++ + P +GS+ DG ++ + L++ R + MIFQ ++ +P T G
Sbjct: 73 VLRLTDP----TAGSVYFDGEDVTAYDDTALKRFRR--EAQMIFQNPDSSFDPRMTTGES 126
Query: 115 MIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPD 174
+ EPL H R L+ A LE VG+ E RYPHELSGG KQRV +A AL++ P
Sbjct: 127 VAEPLKIHGVGPRSRRLEIARDLLERVGMSGEDAARYPHELSGGQKQRVALARALVVNPR 186
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
+++ADEP +ALDV VQA+++ L+ ++ + L ++FI+HD+ ++ E+ D++A+MY G+IV
Sbjct: 187 LIVADEPVSALDVSVQAEVLTLLNDIQAEFNLGVLFISHDMGVVREVCDRVAVMYLGEIV 246
Query: 235 EIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEF-IPGSPPNLLNPPSGCRFHPRCP 292
E+G +E V+ +P HPYT+ LL +IP + + + + G P +PP+GC FH RCP
Sbjct: 247 EMGRTEDVFNDPEHPYTRALLRSIPTVGVESRGTDAGLRGEVPPPSDPPTGCNFHTRCP 305
>pir||D72720 probable oligopeptide transport ATP-binding protein oppD APE0301 -
Aeropyrum pernix (strain K1) >gi|5103940|dbj|BAA79256.1|
(AP000059) 282aa long hypothetical oligopeptide
transport ATP-binding protein oppD [Aeropyrum pernix]
Length = 282
Score = 228 bits (574), Expect = 1e-58
Identities = 127/282 (45%), Positives = 181/282 (64%), Gaps = 9/282 (3%)
Query: 42 GESGCGKSSIGFTLMGMPQPPGRIVSGSIKID-----GREIVGLPEDVLRKEIRWQKISM 96
GESGCGKS++ ++ + I GSI ++ ++V L ED L K IR + +SM
Sbjct: 2 GESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVK-IRGKIVSM 60
Query: 97 IFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELS 156
IFQ AL+PV+ V Q+ + + + + A + K + + I+ +YPHELS
Sbjct: 61 IFQDPSAALSPVHKVKKQVTDHVSGEKRRVEKIAQEILKKLM--MPAPHMILEKYPHELS 118
Query: 157 GGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLS 216
GGMKQR+VIA +LI P I+IADEPTTALDV VQAQI+ ++ RL+++L ++I ITH+L+
Sbjct: 119 GGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITHNLA 178
Query: 217 ILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPP 276
+ AEI+D+IA+MYAG +VE+ ++ P HPYT+ LL +IP+ H D E++E I G PP
Sbjct: 179 VAAEIADRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKSIPKPHVD-EEIEPIRGEPP 237
Query: 277 NLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAACWL 318
+L +PP GCRFHPRCPY MD C +P++ E AC L
Sbjct: 238 SLADPPPGCRFHPRCPYVMDVCMRIKPRLEERAPGRLVACHL 279
>pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190098|gb|AAF38947.1| (AE002273) peptide ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 321
Score = 228 bits (574), Expect = 1e-58
Identities = 120/321 (37%), Positives = 195/321 (60%), Gaps = 8/321 (2%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A+ +L+VKNL + + V+D++F++ G+ L + GESG GKS +LM +
Sbjct: 3 AQPLLQVKNLSVSLNRNTVSFPVVEDLSFNVFPGQTLAIIGESGSGKSITAQSLMQLLPE 62
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
+SG + ++ +++L K + K++MIFQ + + +PV+T+ Q E +
Sbjct: 63 EYFSISGEAFLHKENLLDR-KNLLSKTLFGSKMAMIFQNPLASFDPVFTIEQQFHEVIRT 121
Query: 122 HRGMSREDALDRAMKYLELVGL-DPE-IVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H ++++ A ++ + L G DPE + YPHELSGGM QR+ IA L+ PD++IAD
Sbjct: 122 HLDLTKKVAHEQIVTVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDLLIAD 181
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV VQ QI+ L+K L+KK G+S++ ITHD+ ++AE++D + ++YAG++ E
Sbjct: 182 EPTTALDVSVQYQILQLLKTLQKKTGMSLLVITHDMGVVAEMADDVFVLYAGRMAEYSSV 241
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIP--GSPPNLLNPPSGCRFHPRCPYAMDR 297
+ +++ PAHPYT+ LLA+ P +K F+P G PP+ N P GC + PRC A+
Sbjct: 242 QDIFHSPAHPYTKDLLASRP---SQYKKQTFVPISGHPPHYTNLPKGCCYSPRCQKALPI 298
Query: 298 CKEEEPKMVEVDKDHYAACWL 318
C ++ P + ++ H+ CWL
Sbjct: 299 CYKQSPHAISLNDHHHVRCWL 319
>sp|P50980|OPPD_LACLC OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|495177|gb|AAB00533.1| (U09553) ATP binding protein
[Lactococcus lactis]
Length = 338
Score = 226 bits (571), Expect = 2e-58
Identities = 124/316 (39%), Positives = 188/316 (59%), Gaps = 5/316 (1%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
++ ILE K + + + + KA+ D+ L +GEVL + GESG GKS++ +MG+ P
Sbjct: 3 SENILEAKQVSVAFRIAGKFQKAIYDIDLSLRRGEVLAIVGESGSGKSTLATAVMGLHNP 62
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
++GSI +D E++G D + IR K+ MIFQ + ALNP+ +G Q+ E L
Sbjct: 63 NQTQITGSILLDEEEVIGKTGDSMAS-IRGSKVGMIFQNPLTALNPLMKIGQQIKEMLAV 121
Query: 122 HRGMSREDALDRAMKYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H R + LE VG+ +V ++PH+LSGGM+QRV+IA A+ +PD++IAD
Sbjct: 122 HDVYPENQYESRIFQLLEQVGIPNPKRVVNQFPHQLSGGMRQRVMIAIAIANDPDLIIAD 181
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV +QAQI++L+ ++KK +I ITHDL ++AE++D +A+MYAG++VE
Sbjct: 182 EPTTALDVTIQAQILDLILEIQKKKNAGVILITHDLGVVAEVADTVAVMYAGQLVEKASV 241
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLN-PPSGCRFHPRCPYAMDRC 298
E+++ P HPYT+ LL + P + L IPGS P+L F R P+ +
Sbjct: 242 EELFQNPKHPYTRSLLRSNPSAETVSDDLYVIPGSVPSLSEIEYDKDLFLARVPWMKEEA 301
Query: 299 -KEEEPKMVEVDKDHY 313
K KM E+ +H+
Sbjct: 302 QKVISEKMTEISSNHF 317
>sp|Q07733|OPPD_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075749|pir||A53290 oligopeptide transport protein
oppD - Lactococcus lactis subsp. lactis
>gi|308850|gb|AAA16163.1| (L18760) ATP binding protein
[Lactococcus lactis]
Length = 338
Score = 226 bits (569), Expect = 4e-58
Identities = 124/316 (39%), Positives = 188/316 (59%), Gaps = 5/316 (1%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
++ ILE K + + + + KA+ D+ L++GEVL + GESG GKS+ +MG+ P
Sbjct: 3 SENILEAKQVSVAFRIAGKFQKAIYDIDLSLKRGEVLAIVGESGSGKSTFATAVMGLHNP 62
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
++GSI +D E++G D + IR K+ MIFQ + ALNP+ +G Q+ E L
Sbjct: 63 NQTQITGSILLDDEEVIGKTGDSMAS-IRGSKVGMIFQNPLTALNPLMKIGQQIKEMLAV 121
Query: 122 HRGMSREDALDRAMKYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H R + LE VG+ +V ++PH+LSGGM+QRV+IA A+ +PD++IAD
Sbjct: 122 HDVYPENQYESRIFQLLEQVGIPNPKRVVNQFPHQLSGGMRQRVMIAIAIANDPDLIIAD 181
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV +QAQI++L+ ++KK +I ITHDL ++AE++D +A+MYAG++VE
Sbjct: 182 EPTTALDVTIQAQILDLILEIQKKKNAGVILITHDLGVVAEVADTVAVMYAGQLVEKTSV 241
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLN-PPSGCRFHPRCPYAMDRC 298
E+++ P HPYT+ LL + P + L IPGS P+L F R P+ +
Sbjct: 242 EELFQNPKHPYTRSLLRSNPSAETVSDDLYVIPGSVPSLSKIEYDKDLFLARVPWMKEEA 301
Query: 299 -KEEEPKMVEVDKDHY 313
K KM E+ +H+
Sbjct: 302 QKVISEKMTEISSNHF 317
>gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (dppF-1) [Sulfolobus
solfataricus]
Length = 325
Score = 224 bits (566), Expect = 8e-58
Identities = 118/322 (36%), Positives = 202/322 (62%), Gaps = 19/322 (5%)
Query: 5 ILEVKNLKMYY-----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMP 59
+++V+NLK+Y+ FT + VKA+D VT +++ E++G+ GESG GK+++G +G+
Sbjct: 14 VVKVENLKVYFTKGGMFTKKYVVKALDGVTLSIKEREIMGVVGESGSGKTTLGRVTIGLQ 73
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIR--WQKISMIFQGAMNALNPVYTVGYQMIE 117
+P V IK D +EI +V + +++ + MI+Q ++++P+ V +
Sbjct: 74 KPTSGNVY--IKADNKEI-----NVNKAKLKDISNYVQMIYQDPYSSIDPIMRVYDVLAT 126
Query: 118 PLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
PL Y + + ++ AM+ LV L E++ ++LSGG +QR+ IA A+++ P ++
Sbjct: 127 PLKYKKMSDIDKKIEEAMR---LVDLPLELLENRVYQLSGGQRQRLSIARAIVVNPKYIV 183
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEPTT LD ++ +I+ ++K ++ G S ++ITH+L I ISD+I ++Y GKIVE+G
Sbjct: 184 ADEPTTMLDASLKGEILKIIKDARESKGFSFMYITHELPIAKIISDRIIVLYLGKIVELG 243
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDV-EKLEFIPGSPPNLLNPPSGCRFHPRCPYAMD 296
S ++ P HPYTQ L+ PR+ + +K++ I +++ P GC F+PRCP+AM
Sbjct: 244 NSNEIIKNPLHPYTQGLIEVYPRIDPSLRDKIKEIK-IKVDIVRPDKGCVFYPRCPFAMP 302
Query: 297 RCKEEEPKMVEVDKDHYAACWL 318
+CKE+EP++ EV ++HY ACWL
Sbjct: 303 KCKEQEPELKEVSQNHYVACWL 324
>dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-binding protein in bcr
5'region. [Escherichia coli] >gi|4062406|dbj|BAA35524.1|
(D90721) Hypothetical ABC transporter ATP-binding
protein in bcr 5'region. [Escherichia coli]
Length = 659
Score = 224 bits (565), Expect = 1e-57
Identities = 117/268 (43%), Positives = 179/268 (66%), Gaps = 9/268 (3%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L V+NL + + + + AV +++F L++GE L + GESG GKS LM + +
Sbjct: 45 AGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 104
Query: 62 PGRIVSGS---IKIDGREIVGLPED--VLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
G +V ++ RE++ L E + +R ++MIFQ M +LNPV+TVG Q+
Sbjct: 105 AGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIA 164
Query: 117 EPLIYHRGMSREDALDRAMKYLELVGLDPE---IVYRYPHELSGGMKQRVVIATALILEP 173
E + H+ SRE+A+ A + L+ V + PE I+ RYPH+LSGGM+QRV+IA AL P
Sbjct: 165 ESIRLHQNASREEAMVEAKRMLDQVRI-PEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 223
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
++IADEPTTALDV +QAQI+ L+K L+K++ + +IFITHD+ ++AEI+D++ +MY G+
Sbjct: 224 AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 283
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRL 261
VE G E++++ P HPYT+ LLAA+P+L
Sbjct: 284 VETGTVEQIFHAPQHPYTRALLAAVPQL 311
Score = 201 bits (506), Expect = 9e-51
Identities = 115/262 (43%), Positives = 159/262 (59%), Gaps = 13/262 (4%)
Query: 5 ILEVKNLKMYYFTSRG-------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
+L V+NL + G V AV+ V+FDL GE L L GESG GKS+ G L+
Sbjct: 349 VLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 408
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
+ + G G I +G+ I L L+ R I IFQ +L+P T+G +IE
Sbjct: 409 LVESQG----GEIIFNGQRIDTLSPGKLQALRR--DIQFIFQDPYASLDPRQTIGDSIIE 462
Query: 118 PLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
PL H + +DA R LE VGL PE +RYPHE SGG +QR+ IA AL L P ++I
Sbjct: 463 PLRVHGLLPGKDAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVII 522
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADE +ALDV ++ QIINL+ L++ G++ +FI+HD++++ IS ++A+MY G+IVEIG
Sbjct: 523 ADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 582
Query: 238 PSEKVYYEPAHPYTQKLLAAIP 259
P V+ P HPYT+KLLAA+P
Sbjct: 583 PRRAVFENPQHPYTRKLLAAVP 604
>sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YLIA
Length = 629
Score = 224 bits (565), Expect = 1e-57
Identities = 117/268 (43%), Positives = 179/268 (66%), Gaps = 9/268 (3%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L V+NL + + + + AV +++F L++GE L + GESG GKS LM + +
Sbjct: 15 AGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ 74
Query: 62 PGRIVSGS---IKIDGREIVGLPED--VLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
G +V ++ RE++ L E + +R ++MIFQ M +LNPV+TVG Q+
Sbjct: 75 AGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIA 134
Query: 117 EPLIYHRGMSREDALDRAMKYLELVGLDPE---IVYRYPHELSGGMKQRVVIATALILEP 173
E + H+ SRE+A+ A + L+ V + PE I+ RYPH+LSGGM+QRV+IA AL P
Sbjct: 135 ESIRLHQNASREEAMVEAKRMLDQVRI-PEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 193
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
++IADEPTTALDV +QAQI+ L+K L+K++ + +IFITHD+ ++AEI+D++ +MY G+
Sbjct: 194 AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 253
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRL 261
VE G E++++ P HPYT+ LLAA+P+L
Sbjct: 254 VETGTVEQIFHAPQHPYTRALLAAVPQL 281
Score = 201 bits (506), Expect = 9e-51
Identities = 115/262 (43%), Positives = 159/262 (59%), Gaps = 13/262 (4%)
Query: 5 ILEVKNLKMYYFTSRG-------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
+L V+NL + G V AV+ V+FDL GE L L GESG GKS+ G L+
Sbjct: 319 VLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 378
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
+ + G G I +G+ I L L+ R I IFQ +L+P T+G +IE
Sbjct: 379 LVESQG----GEIIFNGQRIDTLSPGKLQALRR--DIQFIFQDPYASLDPRQTIGDSIIE 432
Query: 118 PLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
PL H + +DA R LE VGL PE +RYPHE SGG +QR+ IA AL L P ++I
Sbjct: 433 PLRVHGLLPGKDAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVII 492
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADE +ALDV ++ QIINL+ L++ G++ +FI+HD++++ IS ++A+MY G+IVEIG
Sbjct: 493 ADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 552
Query: 238 PSEKVYYEPAHPYTQKLLAAIP 259
P V+ P HPYT+KLLAA+P
Sbjct: 553 PRRAVFENPQHPYTRKLLAAVP 574
>pir||F71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256912|dbj|BAA29595.1|
(AP000002) 321aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 321
Score = 224 bits (564), Expect = 1e-57
Identities = 120/301 (39%), Positives = 186/301 (60%), Gaps = 11/301 (3%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGLP 81
V+AVDDV+F++ +GE++ L GESG GK++IG ++ + +P SG I G +I
Sbjct: 24 VRAVDDVSFEVGEGEIVSLIGESGSGKTTIGKLILRLLKP----TSGRILFRGEDIWSFD 79
Query: 82 EDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH---RGMSREDALDRAMKYL 138
+ LR+ ++ + +FQ + NP++ V + L++ RG++ + + + L
Sbjct: 80 REKLRRYY-YKNVQAVFQDPFASFNPLHKV--DRVFDLVFRNFLRGVAPGEREELIKRSL 136
Query: 139 ELVGLDP-EIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLM 197
E VGL+P E++ +YPH+LSGG QR++IA AL++EP ++IADE + LD + I+NL+
Sbjct: 137 ESVGLNPGEVLGKYPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDILNLL 196
Query: 198 KRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAA 257
+ K G S+IFITHDL++ ISDKI IMY G+IVE G +E+V+ P HPYT+ LL +
Sbjct: 197 GEFRDKFGTSVIFITHDLALGYYISDKIVIMYRGRIVEWGDAERVFGNPLHPYTRMLLES 256
Query: 258 IPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAACW 317
+P L E P + GCRF PRCPYA C E+ P+ +E++K+H+ AC+
Sbjct: 257 VPDLSVRWEFKGIEPEREEERVYEIKGCRFAPRCPYARKECYEKPPQTIEIEKNHHVACY 316
Query: 318 L 318
L
Sbjct: 317 L 317
>gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola]
Length = 385
Score = 224 bits (564), Expect = 1e-57
Identities = 122/302 (40%), Positives = 182/302 (59%), Gaps = 15/302 (4%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGLP 81
V A D + + +GE +GL GESGCGKS++G T++ + +P +G I +G I
Sbjct: 85 VIANDGIDLVIHEGETVGLVGESGCGKSTLGRTILKLYKP----TAGEIFFEGENITNYT 140
Query: 82 EDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSRED-ALDRAMK-YLE 139
V + +K+ +IFQ ++LNP TVG + E L+ H ++D A ++ +K +
Sbjct: 141 --VTQMMPLRKKMQIIFQDPYSSLNPKMTVGQIIGEALLEHGMFKKKDPAYEKYVKEIMN 198
Query: 140 LVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKR 199
GL ++YRYPHE SGG +QR+ IA AL L+P ++ DE +ALDV +Q+QIINL+
Sbjct: 199 TCGLADYMIYRYPHEFSGGQRQRIGIARALALKPKFIVCDEAVSALDVSIQSQIINLLND 258
Query: 200 LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIP 259
L+K+ LS +FI+HDLS++ ISD+I +MY G +VE ++Y P HPYT+ LL+AIP
Sbjct: 259 LQKEFNLSYLFISHDLSVVKHISDRIGVMYLGNMVEFTDKREMYANPLHPYTKVLLSAIP 318
Query: 260 RLHEDVEKLE-----FIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYA 314
D++K+ + G P+ + P+GC+FH RCP A D CK E P+ E H+
Sbjct: 319 --ETDLQKMRTKRRILLEGDIPSNIITPTGCKFHTRCPIAKDICKREIPQFKEEKPGHFV 376
Query: 315 AC 316
AC
Sbjct: 377 AC 378
>emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding protein appF related
protein [Thermoplasma acidophilum]
Length = 314
Score = 220 bits (556), Expect = 1e-56
Identities = 120/328 (36%), Positives = 191/328 (57%), Gaps = 31/328 (9%)
Query: 4 KILEVKNLKMYYFTSRGP------------VKAVDDVTFDLEKGEVLGLAGESGCGKSSI 51
+I +KN+K YY + V+A+DDV+ + G V+G+ GESG GKS++
Sbjct: 3 EIYSLKNVKKYYLAQKRGLIDALVKVPKIYVRALDDVSISIMDGNVIGVVGESGSGKSTM 62
Query: 52 GFTLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTV 111
G ++ + P G + G + +RK++ M+FQ +LNP V
Sbjct: 63 GKVMVTLETP----TDGELYFKGTRVTKSEYPKIRKQV-----DMVFQNPATSLNPKMKV 113
Query: 112 GYQMIEPL-IYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALI 170
+ EPL + G +E L + Y E+ + ELSGG QRV IA AL+
Sbjct: 114 KDIVSEPLGHFDEGAIKEVILKVGLSY-------DEVKDKQSRELSGGQVQRVAIARALM 166
Query: 171 LEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYA 230
+P++++ DEPT+ALD +QAQ++NL+ L+ + ++ IFITH++ + ISD I ++YA
Sbjct: 167 KKPELLVLDEPTSALDESIQAQVLNLLVDLQTEYKMTYIFITHNILVAKYISDYIVVLYA 226
Query: 231 GKIVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPR 290
GKIVE GP+ +V +P HPYTQ LL+++P + DV+ ++ G P+L+N P GCRF+PR
Sbjct: 227 GKIVEYGPTSEVLSKPLHPYTQLLLSSVPTV--DVKDVKPPVGDVPSLINLPQGCRFNPR 284
Query: 291 CPYAMDRCKEEEPKMVEVDKDHYAACWL 318
CP+ M++C++EEP ++ +++ ACWL
Sbjct: 285 CPFVMEKCRKEEPPLISQGQNYQVACWL 312
>emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding protein homolog
[Mycoplasma hominis]
Length = 388
Score = 219 bits (552), Expect = 4e-56
Identities = 125/322 (38%), Positives = 196/322 (60%), Gaps = 9/322 (2%)
Query: 4 KILEVKNLKMYYFTS-RGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
+IL+V+NL + + + + V V D+ +GE++GL GESG GKS TL+ + +
Sbjct: 43 QILKVRNLHVSFPQGHKKSIHIVRGVDLDVHRGEIIGLVGESGSGKSVTSKTLINVNES- 101
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
G I + I+I E+ + + + IR QKI I Q + +LNP TVG Q+++ L +
Sbjct: 102 GIISADQIQIGEYELTNIKKQKYWQYIRGQKIGYIPQDPLTSLNPTRTVGKQLLDALNNN 161
Query: 123 RGMSREDALDRA---MKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
++ + L+ GL +I Y YPH LSGGMKQR+VI + L+P+++I
Sbjct: 162 EDWKNSTYTEKKNYLIGLLKTFGLRSAEKIFYAYPHTLSGGMKQRIVITMVVALKPELII 221
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEPTTALD VQA ++ L + +++K+G+S+I I+H++S++A+ D I +MYAG+IVE G
Sbjct: 222 ADEPTTALDPTVQASVLALFEDIRQKMGISIILISHNISVIAKFCDYIYVMYAGRIVEKG 281
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
++++ PAHPYT L++AIP + EKL I G+PP++ N P G F R YA++
Sbjct: 282 TKQEIFTNPAHPYTWALISAIPESKD--EKLYTIQGTPPDMANLPLGDPFVYRNDYALEI 339
Query: 298 CKEEEPKMVEVDKDHYAACWLL 319
+EP ++ + + H AA WLL
Sbjct: 340 DYLKEPPLIPITETHAAATWLL 361
>gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T45532 agaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665708|gb|AAB88468.1| (AF242881) agaD
[Agrobacterium tumefaciens]
Length = 569
Score = 217 bits (547), Expect = 1e-55
Identities = 109/272 (40%), Positives = 179/272 (65%), Gaps = 3/272 (1%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
++++L++ NL + + T G AV+ V+ L GE+LGL GESG GK+ + MG+ P
Sbjct: 3 SREVLKIDNLTVAFKTGDGLRTAVNSVSLSLHSGEILGLVGESGSGKTILSLAAMGLLPP 62
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
+ G++K G +++ DVLRK +R ++I+MIFQ M +L+PV+T G Q++E ++
Sbjct: 63 NAVVAGGTVKFFGEDLLTARPDVLRK-LRGKRIAMIFQDPMASLDPVFTCGSQIVESILL 121
Query: 122 HRGMSREDALDRAMKYLELVGL-DPE-IVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H + R +A RA+ L VG+ DPE + YPHELSGG QRV+IA A+ +PD++IAD
Sbjct: 122 HERVPRRNAHQRALDLLTKVGIVDPERCMGSYPHELSGGQCQRVMIAMAVACKPDVIIAD 181
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV VQ Q++NL++ L +++G +++ ITHDL ++ E++D++A++Y G ++E +
Sbjct: 182 EPTTALDVTVQKQVLNLLQNLNQEIGAAILLITHDLGVIYEVADRVAVIYRGDMMEEAKT 241
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFI 271
++ P YT+ L+A++P + +L I
Sbjct: 242 TDLFAAPKSAYTKALIASMPSVSTPKTRLPVI 273
Score = 190 bits (479), Expect = 1e-47
Identities = 106/264 (40%), Positives = 162/264 (61%), Gaps = 16/264 (6%)
Query: 5 ILEVKNLKMYYFTSRGPV------KAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM 58
+L ++NL ++ P+ +AVDDV+ D+ +GL GESGCGKS++ +M +
Sbjct: 304 LLTIRNLTKTFWLRESPLAPPKEFRAVDDVSLDIPARSTVGLVGESGCGKSTLSRLVMRL 363
Query: 59 PQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
+P SG+I+ DG ++ L + LR Q +++FQ +LNP TV + P
Sbjct: 364 MEPN----SGTIEFDGIDLTSLDRERLRHAR--QNFALVFQNPYGSLNPRQTVTDLIAAP 417
Query: 119 LIYH-RGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
+ H +G RE + K L+ VGL + + RYPHE SGG +QR+VIA AL L P ++I
Sbjct: 418 VDIHAKGRDREAIV---AKLLDAVGLPRDAMRRYPHEFSGGQRQRIVIARALALRPKLLI 474
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
DE +ALDV VQAQ++NL++ L+ + L+ +FITHD+S++ ISD IA+M G+IVE G
Sbjct: 475 CDEAVSALDVSVQAQVLNLLQDLQDEFDLTYLFITHDMSVVRHISDTIAVMQKGRIVETG 534
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRL 261
+E+V+ P YT+ LL A+P++
Sbjct: 535 TAEEVFDHPKDEYTRTLLRAVPKI 558
>pir||D75142 oligopeptide transport ATP-binding protein appf PAB0631 -
Pyrococcus abyssi (strain Orsay)
>gi|5458364|emb|CAB49853.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 217 bits (546), Expect = 2e-55
Identities = 124/320 (38%), Positives = 191/320 (58%), Gaps = 12/320 (3%)
Query: 5 ILEVKNLKMYYFTSR---GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
+LEV+NL + + V+AVD V+F + +GE++ L GESG GK++IG ++ + P
Sbjct: 2 LLEVQNLTKIFTSGLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLLTP 61
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVG--YQMIEPL 119
SG I +G++I+ + L K ++K+ +FQ + NP++ V + MI
Sbjct: 62 ----TSGRILFEGKDIMKFSKKEL-KTYYYRKVQAVFQDPFASFNPLHQVDKVFHMIFDS 116
Query: 120 IYHRGMSREDALDRAMKYLELVGLDP-EIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
Y + RE+ + K LE VGL+P E+ +YPH+LSGG QR++IA AL+L+P ++IA
Sbjct: 117 -YFPDLGREEREEMIDKALEEVGLNPSEVRGKYPHQLSGGQLQRILIARALLLKPRLLIA 175
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DE + LD + ++NL+ + K G S++FITHDL++ ISD IMY G IVE+G
Sbjct: 176 DEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVEMGE 235
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
+EKV++ P HPYT+ LL ++P L+ E P + GCR+ PRCP A D C
Sbjct: 236 TEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAPRCPKAKDVC 295
Query: 299 KEEEPKMVEVDKDHYAACWL 318
+ P ++EV+K+H+ AC L
Sbjct: 296 FKIRPTLIEVEKNHWVACHL 315
>pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf) PAB1347 -
Pyrococcus abyssi (strain Orsay)
>gi|5458955|emb|CAB50442.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 319
Score = 213 bits (537), Expect = 2e-54
Identities = 123/321 (38%), Positives = 190/321 (58%), Gaps = 14/321 (4%)
Query: 5 ILEVKNLKMYYFTSR---GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
+LEV+NL + + V+AVD+VTF +++GE++ L GESG GK++IG ++ + +P
Sbjct: 2 LLEVQNLTKIFTSGLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLIKP 61
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
SG I G +I +D L ++ + +FQ + NP+Y V + L++
Sbjct: 62 ----TSGKILFKGEDIWSFDKDKLMNYY-YKNVQAVFQDPFASFNPLYKV--DRVFDLVF 114
Query: 122 H---RGMSREDALDRAMKYLELVGLDP-EIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
+ +S + + + LE VGL+P EI+ ++PH+LSGG QR++IA AL++EP ++I
Sbjct: 115 RTFLKNVSDVEKDELVRRALESVGLNPREILGKFPHQLSGGQLQRILIARALLVEPSLLI 174
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADE + LD + ++NL+ + G S+IFITHDL++ ISDKI IMY G IVE G
Sbjct: 175 ADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVEWG 234
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
+EKV+ P HPYT+ LL ++P L+ E P + GC+F PRC A D+
Sbjct: 235 DTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCSLAKDK 294
Query: 298 CKEEEPKMVEVDKDHYAACWL 318
C + P+ VEV+K+H+ AC L
Sbjct: 295 CWKIRPEPVEVEKNHWVACHL 315
>pir||E70141 oligopeptide transport ATP-binding protein oppD - Lyme disease
spirochete >gi|2281462|gb|AAC46287.1| (AF000366)
oligopeptide permease homolog D [Borrelia burgdorferi]
>gi|2688243|gb|AAC66722.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Borrelia
burgdorferi]
Length = 290
Score = 212 bits (535), Expect = 4e-54
Identities = 114/268 (42%), Positives = 169/268 (62%), Gaps = 4/268 (1%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-PQP 61
+ ILE+KNL + + + V +V +++GE+ + GESG GKS ++ + P+
Sbjct: 4 ENILEIKNLTIEFRLKHTTIHPVSNVNLSVKRGEIRAIVGESGSGKSVTSMAILKLLPEL 63
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
SG I + ++++ L E L K IR KISMIFQ M +LNP + Q+ E +I
Sbjct: 64 TTVYKSGEILFENQDLLKLSEKELLK-IRGNKISMIFQDPMTSLNPFLRISTQLEETIIL 122
Query: 122 HRGMSREDALDRAMKYLELVGL--DPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H+G+ +++A ++A++ L+ VG+ E + +PH+ SGGM+QRV+IA AL P ++IAD
Sbjct: 123 HQGLGKKEAKEKAIEMLKTVGVVNAEERIKHFPHQFSGGMRQRVMIAMALSCHPSLLIAD 182
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV +Q QI+ L+K L KK S IFITHDL+++AEI D +++MY GKIVE G
Sbjct: 183 EPTTALDVTIQEQILLLIKNLSKKFNTSTIFITHDLAVVAEICDTVSVMYQGKIVEEGTV 242
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEK 267
E+++ P HPYT LL +I L D K
Sbjct: 243 EEIFNNPKHPYTIGLLKSILTLEHDPNK 270
>gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T45539 moaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665715|gb|AAB88475.1| (AF242881) moaD
[Agrobacterium tumefaciens]
Length = 588
Score = 212 bits (535), Expect = 4e-54
Identities = 113/260 (43%), Positives = 170/260 (64%), Gaps = 9/260 (3%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
+ +L VKNL + + G + V D++FD+ G L + GESG GKS +MG+
Sbjct: 4 QSVLSVKNLNVAF----GKKQVVQDLSFDIAPGSTLAVVGESGSGKSVTSLAIMGLLPVG 59
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
SGSI+++GRE++ L E + IR KISMIFQ M +LNPV VG+Q+ E + H
Sbjct: 60 VAKASGSIQLNGRELLSLSESEMCG-IRGGKISMIFQEPMTSLNPVQKVGFQIGEAIRIH 118
Query: 123 RGMSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIVIAD 179
RG+ ++ + ++ L+ VG+ P+ R YPH SGGM+QRV+IA AL P ++IAD
Sbjct: 119 RGLRGKELRNAVLEMLKKVGI-PDAERRIDNYPHTFSGGMRQRVMIAMALACNPALIIAD 177
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPTTALDV VQAQI+ L+K+L+++ ++++FITHD+ ++AEI+D++ +M G++VE GP
Sbjct: 178 EPTTALDVTVQAQILELLKQLQRETNVALLFITHDMGVVAEIADRVLVMRGGQVVESGPV 237
Query: 240 EKVYYEPAHPYTQKLLAAIP 259
+ V+ P PYT+ L+ A P
Sbjct: 238 DSVFTRPESPYTKVLIEAAP 257
Score = 186 bits (467), Expect = 3e-46
Identities = 107/270 (39%), Positives = 161/270 (59%), Gaps = 19/270 (7%)
Query: 3 KKILEVKNLKMYY-------FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
+ ILEV++L + + +G V AV+ +F + KGE LGL GESG GKS+IG +
Sbjct: 284 RPILEVRDLTVRFPLRGGLLGNVQGNVHAVEKASFAIGKGETLGLVGESGSGKSTIGKAI 343
Query: 56 MGMPQPPGRIVSGSIKIDGREIVGLPED---VLRKEIRWQKISMIFQGAMNALNPVYTVG 112
+ + G GSI +DGR I E VLR++++ MIFQ +L+ T+G
Sbjct: 344 IDLAPRFG----GSIVVDGRTIDYADEKSLAVLRRDVQ-----MIFQDPFGSLDSRQTIG 394
Query: 113 YQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
++EP+ H S + ++ LE VGLDP PHE SGG +QR+ IA AL +
Sbjct: 395 SAIVEPMYVHGIASGRELREKMEWLLEKVGLDPARASSLPHEFSGGQRQRICIARALSMS 454
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
P ++IADE +ALDV ++ QII LM L+ + G+S +FI+HD++ + +I ++A+MY G+
Sbjct: 455 PKLIIADEAVSALDVAIKGQIIELMMDLQSEFGVSYLFISHDMAAVEKICTRVAVMYFGE 514
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAAIPRLH 262
+VEIG + V P H YT++LL+A+P H
Sbjct: 515 LVEIGGRDNVIGRPGHSYTKRLLSAVPITH 544
>pir||D83419 probable ATP-binding component of ABC transporter PA1807 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9947791|gb|AAG05196.1|AE004607_2 (AE004607) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 212 bits (534), Expect = 5e-54
Identities = 113/263 (42%), Positives = 174/263 (65%), Gaps = 6/263 (2%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-P 59
M++ ILE+++L + + + + V+ V+FD+ +GE L L GESG GKS +++ + P
Sbjct: 1 MSENILEIRDLAVEFLSGEQRQRVVEGVSFDIRQGETLALVGESGSGKSVTAHSILRLLP 60
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
+GSI G +++ LPE LR IR +I+M+FQ M +LNP++T+ Q+ E L
Sbjct: 61 YSVASHPAGSIHYQGEDLLKLPERRLRG-IRGNRIAMVFQEPMTSLNPLHTIEKQLAEVL 119
Query: 120 IYHRGMSREDALDRAMKYLELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEPDIV 176
H+G+ A R ++ LELVG+ PE R YPHELSGG +QRV+IA AL EP ++
Sbjct: 120 ALHKGLGGAKASARILELLELVGI-PEPAKRLKAYPHELSGGQRQRVMIAMALACEPQLL 178
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
IADEPTTALDV VQ +I++L+K L+ +LG+S++ ITHDL+++ I+ ++ +M G+IVE
Sbjct: 179 IADEPTTALDVTVQLKILDLLKDLQARLGMSLLLITHDLNLVRRIAHRVCVMQQGRIVEQ 238
Query: 237 GPSEKVYYEPAHPYTQKLLAAIP 259
++++ P HPYT++LL A P
Sbjct: 239 ASCQELFAAPRHPYTRELLNAEP 261
Score = 185 bits (466), Expect = 4e-46
Identities = 100/260 (38%), Positives = 161/260 (61%), Gaps = 14/260 (5%)
Query: 5 ILEVKNLKMYYFTSRGP-------VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
+L V +L++++ +G VKAVD V F+L +G+ LG+ GESG GKS++G ++
Sbjct: 274 LLAVDDLRVWFPIRKGVFRRTVDHVKAVDGVNFELPRGQTLGIVGESGSGKSTLGLAILR 333
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
+ + G I+ +G + GL + +R R ++ ++FQ +L+P VG + E
Sbjct: 334 LLES-----QGGIRFEGTRLDGLAQHDVRPLRR--EMQVVFQDPYGSLSPRMCVGEIVGE 386
Query: 118 PLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
L HR S + + L VGLDP+ YRYPHE SGG +QR+ IA AL+L+P +++
Sbjct: 387 GLRIHRIGSEAEQEQAIIDALVEVGLDPQTRYRYPHEFSGGQRQRIAIARALVLKPALIL 446
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
DEPT+ALD VQ Q++ L+++L+ K L+ +FI+HDL+++ +S ++ ++ GK+VE G
Sbjct: 447 LDEPTSALDRTVQRQVVELLRQLQGKYNLTYLFISHDLAVVKALSHQLMVVRHGKVVEQG 506
Query: 238 PSEKVYYEPAHPYTQKLLAA 257
+E V+ P HPYTQ+LL A
Sbjct: 507 SAEAVFASPQHPYTQQLLEA 526
>pir||F64557 dipeptide transport ATP-binding protein dppF - Helicobacter pylori
(strain 26695) >gi|2313400|gb|AAD07371.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Helicobacter pylori 26695]
Length = 268
Score = 210 bits (529), Expect = 2e-53
Identities = 113/274 (41%), Positives = 172/274 (62%), Gaps = 20/274 (7%)
Query: 4 KILEVKNLKMYYFTSRGPVK------AVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
K+LE+K LK Y RG K A++ ++F++E+ EVL + GESGCGKS+ L G
Sbjct: 2 KLLEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAG 61
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRW----QKISMIFQGAMNALNPVYTVGY 113
+ + SG+I +G+ + + W +K+ MIFQ ++LNP + VG
Sbjct: 62 IERQD----SGAIYFNGKRHLHFSKQ------DWFDYRKKVQMIFQDPYSSLNPRWKVGE 111
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
+ EPL+ + S+++ + ++ ++ VGL E + RYPH+ SGG +QR+ IA ALIL P
Sbjct: 112 IIAEPLLLNSHFSKKEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHP 171
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
+VI DEP +ALDV +QAQ++NL+ L+K++GL+ IFI+HDL ++ ISDKI +M G+I
Sbjct: 172 SVVICDEPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQI 231
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEK 267
VE G + V P HPYTQKLL A+P L + +++
Sbjct: 232 VETGDVDSVISAPKHPYTQKLLNAVPHLEKSMQR 265
>pir||A71952 dipeptide transport system ATP-binding protein - Helicobacter
pylori (strain J99) >gi|4154801|gb|AAD05857.1|
(AE001465) DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 268
Score = 210 bits (529), Expect = 2e-53
Identities = 113/274 (41%), Positives = 172/274 (62%), Gaps = 20/274 (7%)
Query: 4 KILEVKNLKMYYFTSRGPVK------AVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
K+LE+K LK Y RG K A++ ++F++E+ EVL + GESGCGKS+ L G
Sbjct: 2 KLLEIKELKKSYAIDRGLFKPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAKILAG 61
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRW----QKISMIFQGAMNALNPVYTVGY 113
+ + SG+I +G+ + + W +K+ MIFQ ++LNP + VG
Sbjct: 62 IERQD----SGAIYFNGKRHLHFSKQ------DWFDYRKKVQMIFQDPYSSLNPRWKVGE 111
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
+ EPL+ + S+++ + ++ ++ VGL E + RYPH+ SGG +QR+ IA ALIL P
Sbjct: 112 IIAEPLLLNSHFSKKEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHP 171
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
+VI DEP +ALDV +QAQ++NL+ L+K++GL+ IFI+HDL ++ ISDKI +M G+I
Sbjct: 172 SVVICDEPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQI 231
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEK 267
VE G + V P HPYTQKLL A+P L + +++
Sbjct: 232 VETGDVDSVISAPKHPYTQKLLNAVPHLEKSMQR 265
>pir||C72536 probable oligopeptide transport ATP-binding protein APE1576 -
Aeropyrum pernix (strain K1) >gi|5105263|dbj|BAA80576.1|
(AP000062) 377aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 377
Score = 208 bits (524), Expect = 7e-53
Identities = 129/347 (37%), Positives = 198/347 (56%), Gaps = 36/347 (10%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+ + I E+ +K F VKAVD V+F + +GEV L GESGCGK++ G ++ + +
Sbjct: 31 LRRSITELITMKPQRF-----VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVK 85
Query: 61 PPGRIVSGSIK------IDGREIVGLPE---DVLR------KEIRWQKISMIFQGAMNAL 105
G V K ++ R + L + D+L K +R +++ +++Q +L
Sbjct: 86 ATGGRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRKFKPLR-RELQIVYQDPYGSL 144
Query: 106 NPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRV 163
NP +T+ + +PL+ H + + + + LE V L P + + RYPH+LSGG +QRV
Sbjct: 145 NPRFTIKRILEDPLLIHSIGNAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRV 204
Query: 164 VIATALILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISD 223
IA A IL P +V+ADEP + LDV ++A+I+ L+ ++KLG S++FITHDL++ I D
Sbjct: 205 AIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICD 264
Query: 224 KIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPRLH-EDVEKLEFIP--GSPPNLLN 280
+IA+MY GKIVE G + ++ P HPYT+ L+AAIP + +KL +P G P+
Sbjct: 265 RIAVMYLGKIVETGDARRIIERPIHPYTKALVAAIPEPDPSNRKKLREVPIKGEIPSAAA 324
Query: 281 PPSGCRFHPRC---PYAMDR----CKEEEPKM---VEVDKDHYAACW 317
P GCRFHPRC MDR C +EP + E ++D +CW
Sbjct: 325 IPPGCRFHPRCVEYEQDMDRLREMCPVKEPPLKRPTEGEEDRRVSCW 371
>pir||T03432 probable transport protein accC - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153179|gb|AAC17199.1| (AF010180) AccC
[Agrobacterium tumefaciens]
Length = 338
Score = 207 bits (522), Expect = 1e-52
Identities = 117/305 (38%), Positives = 178/305 (58%), Gaps = 13/305 (4%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A+ + +V LK F AV+ + +L E +G+ GESG GKS++G L+G+
Sbjct: 8 ARGVTKVFRLKSGLFVKPSVHVAVNSIDLELAPRERVGVVGESGSGKSTLGRLLLGLTST 67
Query: 62 PGRIVSGSIKIDG---REIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
G + +G + RKE S++ Q ++ALNP T+G Q+ E
Sbjct: 68 ----TEGEVLFEGLAHTDRSARDWSTFRKET-----SLVQQNPLSALNPQMTIGEQIAEA 118
Query: 119 LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
+ HR ++ A DRA L+ VGL ++ RYPH++SGG +QRVVIA ALIL+P +V+
Sbjct: 119 VWVHR-VANAGARDRAATMLDRVGLSSAMMNRYPHQMSGGQRQRVVIARALILDPKLVVF 177
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DE +ALDV VQAQ++ L+++L ++L L+ +FITHDL I+ + D+I +MY G++VE G
Sbjct: 178 DEAVSALDVSVQAQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLGRVVETGD 237
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
+ VY P HPYT+ LLA++P + V +E + +GC F RCP+A++RC
Sbjct: 238 IKSVYAWPRHPYTRALLASVPTMDPTVRNIEPPIKGELDAGKVMTGCAFRSRCPFAIERC 297
Query: 299 KEEEP 303
+E P
Sbjct: 298 AKETP 302
>gi|10954942 Probable accC [Agrobacterium tumefaciens]
>gi|6498295|dbj|BAA87747.1| (AB016260) Probable accC
[Agrobacterium tumefaciens]
Length = 339
Score = 207 bits (521), Expect = 2e-52
Identities = 117/305 (38%), Positives = 176/305 (57%), Gaps = 12/305 (3%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A+ + +V LK F AV+ + +L E + + ESG GKS++G L+G+
Sbjct: 8 ARGVTKVFRLKSGLFVKPSVHVAVNSIDLELAPRERVSVVRESGSGKSTLGRLLLGLTST 67
Query: 62 PGRIVSGSIKIDG---REIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
G + +G + RKE S++ Q ++ALNP T+G Q+ E
Sbjct: 68 ----TEGEVLFEGLAHTDRSARDWSTFRKET-----SLVQQNPLSALNPQMTIGEQIAEA 118
Query: 119 LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
+ HR +R A DRA L+ VGL ++ RYPH++SGG +QRVVIA ALIL+P +VI
Sbjct: 119 VWVHRVANRAGARDRAATMLDRVGLSSAMMNRYPHQMSGGQRQRVVIARALILDPKLVIF 178
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DE +ALDV VQAQ++ L+++L ++L L+ +FITHDL I+ + D+I +MY G++VE G
Sbjct: 179 DEAVSALDVSVQAQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLGRVVETGD 238
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRC 298
+ VY P HPYT+ LLA++P + V +E + +GC F RCP+A++RC
Sbjct: 239 IKSVYAWPRHPYTRALLASVPTMDPTVRNIEPPIKGELDAGKVMTGCAFRSRCPFAIERC 298
Query: 299 KEEEP 303
+E P
Sbjct: 299 AKETP 303
>dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elongatus]
Length = 531
Score = 205 bits (516), Expect = 6e-52
Identities = 114/263 (43%), Positives = 160/263 (60%), Gaps = 13/263 (4%)
Query: 2 AKKILEVKNLKMYY-----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLM 56
A ++L V+NL+ +Y + ++AVD V L +GE LGL GESGCGKS++ ++
Sbjct: 272 APELLRVENLQRHYRLGGWLQPQTTIRAVDGVDLTLRRGETLGLVGESGCGKSTLSRLIL 331
Query: 57 GMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
+ +G + GR + L LR+ R + MIFQ LNP TV ++
Sbjct: 332 QLIPAN----AGDVVFLGRSLTQLSAAQLRRTRR--DLQMIFQDPHACLNPKMTVAQNLL 385
Query: 117 EPLIYHRGMSREDALDRAMKYLELVGLDPEIVY--RYPHELSGGMKQRVVIATALILEPD 174
EPL+ HR M++ A +R + L V L P Y RYPH LSGG +QRV IA ALI P
Sbjct: 386 EPLLIHRLMAKRAAQERVREMLMQVELTPAEAYLHRYPHALSGGQRQRVAIARALITHPQ 445
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
+VI DEP + LD +QAQ++ LM+ LK++L L+ +FITHDL+I D++A+MY GKIV
Sbjct: 446 LVICDEPVSMLDAHIQAQVLALMQELKEQLQLTYLFITHDLAIARRFCDRVAVMYRGKIV 505
Query: 235 EIGPSEKVYYEPAHPYTQKLLAA 257
E+ P+ +++ P HPYTQKLLAA
Sbjct: 506 ELAPTAQLFAHPQHPYTQKLLAA 528
Score = 194 bits (489), Expect = 9e-49
Identities = 107/257 (41%), Positives = 163/257 (62%), Gaps = 6/257 (2%)
Query: 5 ILEVKNLKMYY---FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
+LE++ L++ Y TS VD V+F + GE GL G SGCGKS+IG ++ + P
Sbjct: 4 LLELRELRVAYPRMETSSAATFVVDGVSFCVAAGERFGLVGASGCGKSTIGKAILRL-LP 62
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
PG + G I + G+ ++GL L++ +R ++I ++FQ M LNP+ ++ E L
Sbjct: 63 PGSQIFGQIALQGQSLLGLSASQLQR-LRGEQIGLVFQDPMTRLNPLMSIYDHCDELLRS 121
Query: 122 HR-GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
H SR R ++ LE V + +++YPHELSGGM+QRV IA AL+L P ++IADE
Sbjct: 122 HWFSWSRPQRRQRIIEVLERVKIPANRLHQYPHELSGGMRQRVAIALALLLNPPLIIADE 181
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTTALDV V A+I+ + RL ++ ++ I+HDL+++A+ D++A+M+ GKI+E+G +
Sbjct: 182 PTTALDVTVAAEILEELTRLCQQEQRGLLLISHDLALMAKYCDRLAVMHQGKIMELGAAH 241
Query: 241 KVYYEPAHPYTQKLLAA 257
+V P HPYTQ LLAA
Sbjct: 242 QVLQRPQHPYTQSLLAA 258
>pir||T35983 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464268|emb|CAB37471.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 359
Score = 205 bits (516), Expect = 6e-52
Identities = 126/334 (37%), Positives = 184/334 (54%), Gaps = 36/334 (10%)
Query: 2 AKKILEVKNLKMYYFTSRGPV--KAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMP 59
A +L V+ L + + RG +AVD V D+ +GE++ L GESGCGK+++ +L+G+
Sbjct: 29 APPLLSVRGLHVTFPGRRGAAAARAVDGVDLDIRRGEIVALVGESGCGKTTLARSLLGLV 88
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
+P G G + DG + G L+ R + ++ Q +LNP +TV + E L
Sbjct: 89 RPTG----GRVTFDGAPL-GYSARALKAYRR--RAQLVLQDPSGSLNPRHTVYDIVAEGL 141
Query: 120 IYHRGMSRE-----DALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILE 172
H E +AL RA GL P RYPHELSGG +QRVVIA AL+L+
Sbjct: 142 RIHGHAGDERTAVAEALSRA-------GLRPPERFFLRYPHELSGGQRQRVVIAGALVLQ 194
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
P++++ADEP +LD V+ +I+ L+ RL+ +LGLS + +THDL + I+D++A+MY G+
Sbjct: 195 PELLVADEPVASLDASVRGEILALLLRLRTELGLSALVVTHDLGLAWNIADRVAVMYLGR 254
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCP 292
IVE G E+V P HPYTQ LL+ +P E + G PP+ P GCRFH RCP
Sbjct: 255 IVETGAVEQVLTAPRHPYTQALLSVLP---EAPGAPVVLTGEPPDPSYIPGGCRFHVRCP 311
Query: 293 Y----------AMDRCKEEEPKMVEVDKDHYAAC 316
D C+ EE +++ + AC
Sbjct: 312 VLASGEAVRAGVADACRNEELEILRGGDESQVAC 345
>sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YEJF
>gi|7445954|pir||C64987 probable oligopeptide transport
protein yejF - Escherichia coli
>gi|405909|gb|AAA16379.1| (U00008) yejF [Escherichia
coli] >gi|1788506|gb|AAC75241.1| (AE000307) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 529
Score = 205 bits (515), Expect = 8e-52
Identities = 110/262 (41%), Positives = 167/262 (62%), Gaps = 4/262 (1%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-P 59
M + +L ++NL + + + V+DV+ +E GE L L GESG GKS +++ + P
Sbjct: 1 MTQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP 60
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
PP +SG I+ G ++ + LR +R KI+MIFQ M +LNP++T+ Q+ E L
Sbjct: 61 SPPVEYLSGDIRFHGESLLHASDQTLRG-VRGNKIAMIFQEPMVSLNPLHTLEKQLYEVL 119
Query: 120 IYHRGMSREDALDRAMKYLELVGLDPEI--VYRYPHELSGGMKQRVVIATALILEPDIVI 177
HRGM RE A + L+ VG+ + YPH+LSGG +QRV+IA AL+ P+++I
Sbjct: 120 SLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEPTTALDV VQAQI+ L++ L+ +L + M+FITH+LSI+ +++ ++A+M G+ VE
Sbjct: 180 ADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQN 239
Query: 238 PSEKVYYEPAHPYTQKLLAAIP 259
+ ++ P HPYTQKLL + P
Sbjct: 240 YAATLFASPTHPYTQKLLNSEP 261
Score = 164 bits (410), Expect = 2e-39
Identities = 99/263 (37%), Positives = 154/263 (57%), Gaps = 15/263 (5%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDD-------VTFDLEKGEVLGLAGESGCGKSSIGFT 54
A +L+V+ L++ + +G +K + D ++F L GE LGL GESG GKS+ G
Sbjct: 272 ASTLLDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLA 331
Query: 55 LMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQ 114
L+ + G I+ DG+ + L L IR +I ++FQ ++LNP V
Sbjct: 332 LLRLINSQGSII-----FDGQPLQNLNRRQLLP-IR-HRIQVVFQDPNSSLNPRLNVLQI 384
Query: 115 MIEPLIYHRG-MSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
+ E L H+ +S + + + VGLDPE +RYP E SGG +QR+ IA ALIL+P
Sbjct: 385 IEEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKP 444
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
++I DEPT++LD VQAQI+ L+K L++K L+ +FI+HDL ++ + ++ I+ G++
Sbjct: 445 SLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEV 504
Query: 234 VEIGPSEKVYYEPAHPYTQKLLA 256
VE GP +V+ P YT++LLA
Sbjct: 505 VEQGPCARVFATPQQEYTRQLLA 527
>dbj|BAA15988.1| (D90849) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 370
Score = 205 bits (515), Expect = 8e-52
Identities = 110/262 (41%), Positives = 167/262 (62%), Gaps = 4/262 (1%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM-P 59
M + +L ++NL + + + V+DV+ +E GE L L GESG GKS +++ + P
Sbjct: 1 MTQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP 60
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
PP +SG I+ G ++ + LR +R KI+MIFQ M +LNP++T+ Q+ E L
Sbjct: 61 SPPVEYLSGDIRFHGESLLHASDQTLRG-VRGNKIAMIFQEPMVSLNPLHTLEKQLYEVL 119
Query: 120 IYHRGMSREDALDRAMKYLELVGLDPEI--VYRYPHELSGGMKQRVVIATALILEPDIVI 177
HRGM RE A + L+ VG+ + YPH+LSGG +QRV+IA AL+ P+++I
Sbjct: 120 SLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEPTTALDV VQAQI+ L++ L+ +L + M+FITH+LSI+ +++ ++A+M G+ VE
Sbjct: 180 ADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQN 239
Query: 238 PSEKVYYEPAHPYTQKLLAAIP 259
+ ++ P HPYTQKLL + P
Sbjct: 240 YAATLFASPTHPYTQKLLNSEP 261
>pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AAC07852.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 204 bits (513), Expect = 1e-51
Identities = 109/303 (35%), Positives = 184/303 (59%), Gaps = 22/303 (7%)
Query: 4 KILEVKNLKMYYFTSRGPVK-----AVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM 58
++L ++NL Y G ++ A+ +V+ +++G+ L + GESG GKS++G ++ +
Sbjct: 2 ELLSIQNLTKVYKVPAGFLRKKNFFALKEVSLSIKQGDFLAIVGESGSGKSTLGKIILRL 61
Query: 59 PQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
+P G + G++I + ++ RK +S +FQ ++LNP V + EP
Sbjct: 62 EKP----TKGKVSFKGKDIFSMGKEYTRK------VSAVFQDPRSSLNPRMKVEEILEEP 111
Query: 119 LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
LI HR R++ R +K L+ V L E++ + P ++SGG QRV IA ALILEP++++A
Sbjct: 112 LIVHRVKGRKE---RVLKVLQRVRLSEELLEKRPLQISGGQAQRVAIARALILEPELIVA 168
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPT +LDV VQ +I+ L K L K G+S F+THD+ ++ ++++ + ++YAG ++E+G
Sbjct: 169 DEPTASLDVSVQEEILELFKELNSK-GISFFFVTHDIRVVEKVANMVGVIYAGILMELGK 227
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLH-EDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDR 297
E+V P HPYT+ LL +P H +D + L+++ ++ P GC F+PRCP AM+
Sbjct: 228 KEEVLKNPLHPYTKFLLENVPVRHPKDRKPLKYLQEEEVSI--PEEGCPFYPRCPEAMEE 285
Query: 298 CKE 300
CK+
Sbjct: 286 CKK 288
>sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIF
>gi|98019|pir||S11153 oligopeptide transport protein
amiF - Streptococcus pneumoniae
>gi|47347|emb|CAA35217.1| (X17337) AmiF protein
[Streptococcus pneumoniae]
Length = 308
Score = 203 bits (511), Expect = 2e-51
Identities = 110/260 (42%), Positives = 166/260 (63%), Gaps = 6/260 (2%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++K++E+K+L++ + AV + F + KGE L GESG GK++IG ++G+
Sbjct: 1 MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLND 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
+G I DG++I G E+ ++I MIFQ +LN TV Y + E L
Sbjct: 61 TS----NGDIIFDGQKINGKKSREQAAELI-RRIQMIFQDPAASLNERATVDYIISEGLY 115
Query: 121 YHRGMS-REDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
HR E+ ++ + VGL E + RYPHE SGG +QR+ IA AL+++PD VIAD
Sbjct: 116 NHRLFKDEEERKEKVQSIIREVGLLAEHLTRYPHEFSGGQRQRIGIARALVMQPDFVIAD 175
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EP +ALDV V+AQ++NL+K+ +K+LGL+ +FI HDLS++ ISD+IA++Y G IVE+ +
Sbjct: 176 EPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAET 235
Query: 240 EKVYYEPAHPYTQKLLAAIP 259
E+++ P HPYTQ LL+A+P
Sbjct: 236 EELFNNPIHPYTQALLSAVP 255
>gb|AAD48155.1|AF086619_1 (AF086619) ABC transporter homolog [Loofah witches'-broom
phytoplasma]
Length = 264
Score = 203 bits (511), Expect = 2e-51
Identities = 107/254 (42%), Positives = 172/254 (67%), Gaps = 3/254 (1%)
Query: 4 KILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPG 63
KILEV NL Y+ T +G VKAV ++F LE+G+ LGL GESG GKS +++ + +
Sbjct: 2 KILEVNNLHTYFETEKGLVKAVQGISFYLEQGKTLGLVGESGSGKSQTANSILKLFEKTQ 61
Query: 64 RIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHR 123
+I G I + + I E ++K IR ++ISMIFQ + +LNP++ + Q++E L H+
Sbjct: 62 KIHQGEIIFNNQVISDFNEKKMQK-IRGKEISMIFQDPITSLNPMFKIKDQIMEILFIHQ 120
Query: 124 GMSREDALDRAMKYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
++ ++A ++A+ L+ + +I+ YP++LSGGM QRV+IA ALI +P ++I DE
Sbjct: 121 EITYKEAYEKALNMLKKTKIHNCEQIMNCYPYQLSGGMCQRVMIAIALICQPKLLIVDEA 180
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
T ALDV+VQ +I+NL+K ++K+ +++FI+HDLS+++EISD I +M GKI+E +++
Sbjct: 181 TIALDVIVQKEILNLIKEMQKENQTAVLFISHDLSVISEISDDIIVMLKGKIIEKASTQQ 240
Query: 242 VYYEPAHPYTQKLL 255
+ +P HPYT+ LL
Sbjct: 241 ILKDPKHPYTRTLL 254
>gi|10954710 hypothetical ABC-transporter gene~similar to moaD gene
[Agrobacterium rhizogenes] >gi|8918710|dbj|BAA97775.1|
(AB039932) hypothetical ABC-transporter gene~similar to
moaD gene [Agrobacterium rhizogenes]
>gi|10567374|dbj|BAB16183.1| (AP002086) hypothetical
ABC-transporter gene~similar to moaD gene [Agrobacterium
rhizogenes]
Length = 603
Score = 202 bits (508), Expect = 5e-51
Identities = 119/321 (37%), Positives = 185/321 (57%), Gaps = 16/321 (4%)
Query: 5 ILEVKNLKMYY-------FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMG 57
+L V+N Y F + VKAV DV+F ++ GE G+ GESGCGKS++ L
Sbjct: 278 VLTVENATRTYSVRRRDAFNAFNEVKAVRDVSFTVKAGENFGIVGESGCGKSTLTRLLAW 337
Query: 58 MPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
+ QP +G I G+ + L L E+R + ++ Q +L ++ + E
Sbjct: 338 LEQPN----AGRIAFLGKNLSNLSARSLT-EMR-KSFQLLLQDPYGSLPAGMSIIRMIEE 391
Query: 118 PLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
PL+ H G++R DA RA + + VGL ++ R P LS G +QR+ IA AL+L+P ++I
Sbjct: 392 PLLIH-GVARRDAEQRAQEAMREVGLHADLAERLPVGLSAGQRQRINIARALVLKPRLLI 450
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
DE +ALD V QA++++L KRL+ G S IFI+HDL+++ I ++A+MY G+IVE+
Sbjct: 451 LDETLSALDQVEQAELLDLFKRLQAAHGFSYIFISHDLALVRRICHRVAVMYLGRIVELA 510
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHED--VEKLEFIPGSPPNLLNPPSGCRFHPRCPYAM 295
++ ++ P HPYT+ LL+A+P L E+ + G PP+ ++ P GC F RCP A
Sbjct: 511 DNKTLFEHPHHPYTRALLSAMPTLEENRFPGAQYLLDGEPPSPIHLPVGCSFRSRCPRAQ 570
Query: 296 DRCKEEEPKMVEVDKDHYAAC 316
C++ +P + D +YAAC
Sbjct: 571 SDCEKTDPMLEGSDGGNYAAC 591
Score = 155 bits (388), Expect = 6e-37
Identities = 95/272 (34%), Positives = 151/272 (54%), Gaps = 4/272 (1%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+ IL V NL + + VD+V F L+ GEVLGL GE+G GKS + ++ Q
Sbjct: 1 MSDPILAVSNLSVDLLRDGSKRRIVDNVDFALQPGEVLGLVGEAGSGKSVLARAMVNAIQ 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P I SG + +G++++ L LR IR +I I M +L+P +G+Q++E L
Sbjct: 61 APLDISSGQVIFEGKDVLSLDARGLRS-IRGNRIGFIGANPMGSLDPRLPIGHQIVEKLR 119
Query: 121 YHR-GMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
R + + +A ++ + L V + + P + SGGM QRV+I AL+ EP +VI
Sbjct: 120 SVRPDIGKAEAKEKVLDLLGRVHIPSPRSRFHEAPFQFSGGMMQRVMIVDALVSEPSLVI 179
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
AD T LDV V AQII L+ L++ L + +FI+ L ++++I+++ +M G+IVE G
Sbjct: 180 ADNITQPLDVTVAAQIIRLIDNLRESLDTAFLFISSSLPVVSKIAERTLVMQGGRIVEQG 239
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLE 269
+ + P YT+ LL+ IP + ++V E
Sbjct: 240 ETADIAANPQQAYTRALLSRIPSIWKNVSAPE 271
>pir||C72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980563|gb|AAD35169.1|AE001694_5 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 320
Score = 201 bits (507), Expect = 7e-51
Identities = 119/332 (35%), Positives = 184/332 (54%), Gaps = 34/332 (10%)
Query: 5 ILEVKNLKMYY----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+LE+KNL + SR + AVD+V FD+ + E+ LAGESGCGK++ ++G +
Sbjct: 3 LLEIKNLTKIFTIGSIFSRTRIVAVDNVNFDINEAEIFTLAGESGCGKTTTAKIILGFEE 62
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P SG I GR+I + ++ + ++I +FQ + NP+ V E L
Sbjct: 63 P----TSGEIIYKGRKIDRVHQNEKERRELLKEIQAVFQNPFSTFNPLRKVDRYFYETL- 117
Query: 121 YHRGMS--REDALDRAMKYLELVGLD-PEIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
++ G++ ++ A + + L VG+ E +YP E SGG QR+ IA AL+ P +++
Sbjct: 118 FNLGIADTKKKAEEIIKEKLSAVGISFEEFSEKYPSEFSGGQLQRISIARALLTNPSLLV 177
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
ADEP + +D ++ I+NL K LK++ G+S+++ITHDL+ +SD+IA+M+ G IVE+G
Sbjct: 178 ADEPVSMVDASLRMSIVNLFKDLKEQYGVSVLYITHDLTTAYYVSDRIAVMFRGNIVELG 237
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLH-----------EDVEKLEFIPGSPPNLLNPPSGCR 286
P+EKV EP HPYTQ L ++P + E+ E++ GC+
Sbjct: 238 PAEKVLMEPKHPYTQLLRESVPEPDPKKKWDIRIKLSETEQAEYL----------RQGCK 287
Query: 287 FHPRCPYAMDRCKEEEPKMVEVDKDHYAACWL 318
F RCP AMD C++E P EVD CWL
Sbjct: 288 FAGRCPKAMDICRKEPPPYFEVD-GVQVKCWL 318
>pir||F70141 probable oligopeptide transport ATP-binding protein oppF - Lyme
disease spirochete >gi|2281463|gb|AAC46288.1| (AF000366)
oligopeptide permease homolog F [Borrelia burgdorferi]
>gi|2688242|gb|AAC66721.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppF) [Borrelia
burgdorferi]
Length = 323
Score = 201 bits (506), Expect = 9e-51
Identities = 119/327 (36%), Positives = 192/327 (58%), Gaps = 30/327 (9%)
Query: 5 ILEVKNLKMYYFT--------SRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLM 56
IL+V+NL + T ++ V AV++V+F++EK + LGL GESGCGKS+ ++M
Sbjct: 8 ILKVENLMQTFTTGEDFLFWKNKQKVNAVNNVSFEVEKNKTLGLVGESGCGKSTTLRSIM 67
Query: 57 GMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
+ P SG+I +G+ I L + L K + + M+FQ +L+P T+ +
Sbjct: 68 QLYTP----TSGNIYFNGKNITKLSKKELLKTKK--DMQMVFQDPHTSLDPRMTIKEIIA 121
Query: 117 EPL-IYHRGM----SREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALIL 171
EPL IY+ ++++ R + ++VGL ++ RYPHE SGG +QR+ IA AL L
Sbjct: 122 EPLEIYNENKILPKTKQEIEQRVNELTDIVGLHKSMLTRYPHEFSGGQRQRIGIARALAL 181
Query: 172 EPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAG 231
P +++ DE +ALDV ++AQI+NL+K L+K+ LS +FI+HDL+++ +SDKIA+MY G
Sbjct: 182 NPKLLLLDEAVSALDVSIRAQILNLLKALQKEFNLSYLFISHDLAVVKYMSDKIAVMYLG 241
Query: 232 KIVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRC 291
I+E+ P E ++ P HPYT+ L+A+IP ++ + K + I L N
Sbjct: 242 VILELAPRETLFSNPIHPYTKMLIASIPEINPEKRKNKNIKLDEQTLANIRK-------- 293
Query: 292 PYAMDRCKEEEPKMVEVDKDHYAACWL 318
+ + PK+ EV+KDH+ + +L
Sbjct: 294 ---IHLSTQVHPKLEEVEKDHFVSKYL 317
>emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 307
Score = 199 bits (501), Expect = 3e-50
Identities = 121/315 (38%), Positives = 186/315 (58%), Gaps = 25/315 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++K++EVK+L++ + + AV + F ++KGE L GESG GK++IG ++G+
Sbjct: 1 MSEKLVEVKDLEISFGEGKKKFGAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLND 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
SG I DG+ I G E+ +KI MIFQ +LN TV Y + E L
Sbjct: 61 TS----SGQILYDGKVINGRKSKSEANELI-RKIQMIFQDPAASLNERATVDYIISEGLY 115
Query: 121 -YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
++ + E+ ++ + VGL E + RYPHE SGG +QR+ IA AL++ P+ VIAD
Sbjct: 116 NFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIGIARALVMNPEFVIAD 175
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EP +ALDV V+AQ++NL+KR++ + GL+ +FI HDLS++ ISD+IA+++ G IVE+ +
Sbjct: 176 EPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAET 235
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHP-RCPYAMDRC 298
E+++ P HPYTQ LL+A+P IP P L +HP + Y +D+
Sbjct: 236 EELFNNPIHPYTQSLLSAVP-----------IP--DPILERQKELVVYHPDQHDYTLDK- 281
Query: 299 KEEEPKMVEVDKDHY 313
P MVE+ +H+
Sbjct: 282 ----PSMVEIKPNHF 292
>gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus pyogenes]
Length = 307
Score = 199 bits (501), Expect = 3e-50
Identities = 121/315 (38%), Positives = 186/315 (58%), Gaps = 25/315 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++K++EVK+L++ + + AV + F ++KGE L GESG GK++IG ++G+
Sbjct: 1 MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLND 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
SG I DG+ I G E+ +KI MIFQ +LN TV Y + E L
Sbjct: 61 TS----SGQILYDGKVINGRKSKSEANELI-RKIQMIFQDPAASLNERATVDYIISEGLY 115
Query: 121 -YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
++ + E+ ++ + VGL E + RYPHE SGG +QR+ IA AL++ P+ VIAD
Sbjct: 116 NFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIGIARALVMNPEFVIAD 175
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EP +ALDV V+AQ++NL+KR++ + GL+ +FI HDLS++ ISD+IA+++ G IVE+ +
Sbjct: 176 EPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAET 235
Query: 240 EKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHP-RCPYAMDRC 298
E+++ P HPYTQ LL+A+P IP P L +HP + Y +D+
Sbjct: 236 EELFNNPIHPYTQSLLSAVP-----------IP--DPILERQKELVVYHPDQHDYTLDK- 281
Query: 299 KEEEPKMVEVDKDHY 313
P MVE+ +H+
Sbjct: 282 ----PSMVEIKPNHF 292
>pir||B83389 probable ATP-binding component of ABC transporter PA2061 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948069|gb|AAG05449.1|AE004632_8 (AE004632) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 197 bits (496), Expect = 1e-49
Identities = 104/261 (39%), Positives = 163/261 (61%), Gaps = 8/261 (3%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +++L V+NL + Y G + V + F L GE L L GESG GKS L+ +
Sbjct: 1 MNRELLRVENLSVAY----GDTQVVKGIDFSLRAGETLALVGESGSGKSQTAHALLRLLP 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
R+ GS+++DG E++ L L IR Q+I M+FQ M +LNP+ +G Q+ E L
Sbjct: 57 GAARL-GGSVRLDGEELLALSPQALLA-IRGQRIGMVFQEPMTSLNPLQRIGRQVGEGLR 114
Query: 121 YHRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
HR + R ++ LEL GL+ ++ YPH+LSGG +QRV++A AL EP ++IA
Sbjct: 115 LHRRLRGAALRGRVLELLELAGLEQPRRLLEAYPHQLSGGQRQRVMLAMALACEPQLLIA 174
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPTTALDV VQ +++ L++ L+++LG++++ I+HDL+++ ++D++ +M G+IVE
Sbjct: 175 DEPTTALDVTVQKRLLELLQSLQRRLGMAILLISHDLNLVRRVADRVCVMRDGQIVEENA 234
Query: 239 SEKVYYEPAHPYTQKLLAAIP 259
E ++ P HPYT+ L+ A P
Sbjct: 235 CETLFRSPRHPYTRLLIEAEP 255
Score = 169 bits (425), Expect = 3e-41
Identities = 95/265 (35%), Positives = 155/265 (57%), Gaps = 19/265 (7%)
Query: 6 LEVKNLKMYY------FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMP 59
LEV+ L + Y R ++AV +V+ L +G LG+ GESG GKSS+G L+ +
Sbjct: 269 LEVRALSLDYPAPGGWLRRRAGLRAVHEVSLRLRRGSTLGIVGESGSGKSSLGQALLRLL 328
Query: 60 QPPGRIVSGSIKID---GREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMI 116
G+I+ ++D G+ ++ L ++ +FQ +LNP +V +
Sbjct: 329 PAEGQILFQGERLDRLHGKRLLPLR----------RQFQAVFQDPYGSLNPRLSVEQIVG 378
Query: 117 EPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
E L H + R ++ L VGLD + RYPHE SGG +QR+ IA L+L+P ++
Sbjct: 379 EGLRIHGIGDAGERRARVLEALREVGLDEPCLERYPHEFSGGQRQRIAIARTLVLKPALI 438
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
+ DEPT+ALD VQ Q++ L++RL+++ GLS +FI+HDL+++ ++ I ++ G++VE
Sbjct: 439 LLDEPTSALDRSVQCQVVELLRRLQRRHGLSYLFISHDLAVVRALAHDILVLKDGRVVEQ 498
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRL 261
G + ++ +P HPYT++LL AIP L
Sbjct: 499 GSAAALFSQPRHPYTRELLGAIPAL 523
>sp|P77622|YDDO_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDO
>gi|7445738|pir||F64901 ABC-type transport protein b1483
- Escherichia coli >gi|1742423|dbj|BAA15138.1| (D90789)
Dipeptide transport ATP-binding protein DppF.
[Escherichia coli] >gi|1742434|dbj|BAA15148.1| (D90790)
Dipeptide transport ATP-binding protein DppF.
[Escherichia coli] >gi|1787758|gb|AAC74556.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 308
Score = 196 bits (494), Expect = 2e-49
Identities = 109/299 (36%), Positives = 172/299 (57%), Gaps = 25/299 (8%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP-GRIV-SGSIKIDGREIVG 79
V A++ + + +GE LG+ GESGCGKS++ LMGM QP G+ + SGS +I
Sbjct: 29 VHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRI------- 81
Query: 80 LPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLE 139
+ M+FQ +++LNP V + EPL + S + A +
Sbjct: 82 --------------MQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAV 127
Query: 140 LVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKR 199
VG+ PE + R PH SGG +QR+ IA AL +PD+++ DEPT+ALD+ VQAQI+NL+
Sbjct: 128 QVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVT 187
Query: 200 LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIP 259
L++ GL+ + I+H++S++ +SD++A+MY G+IVE+G +++V PAHPYT+ LL ++P
Sbjct: 188 LQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLP 247
Query: 260 RLHEDVEKLEFIPGSP-PNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAACW 317
+ + +E+ + + P P GC F+ RCP A C+ + + D CW
Sbjct: 248 AIDKPLEEEWALRKTDLPGNRTLPQGCFFYERCPLATHGCEVRQSLAIRED-GRELRCW 305
>pir||A82876 oligopeptide transport system permease protein UU560 [imported] -
Ureaplasma urealyticum
>gi|6899566|gb|AAF30973.1|AE002154_9 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 506
Score = 196 bits (494), Expect = 2e-49
Identities = 118/325 (36%), Positives = 194/325 (59%), Gaps = 9/325 (2%)
Query: 3 KKIL-EVKNLKMYYFTSRGP---VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGM 58
KKI E++N+++ + P + + + +GEV + GESG GKS I L G+
Sbjct: 156 KKIAAEIENVRLTFTNPSKPNDRALVLRNTSVQFYEGEVHAIIGESGSGKSVITSLLYGL 215
Query: 59 PQPPGRIVSGSIKIDGREIVGLP-EDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE 117
+ G I + E+ +D + + IS +FQ M+ LNP +G Q++E
Sbjct: 216 AGKNANVEEGKILLYNNEVQDFSFKDWEKSRYLGKVISAVFQNPMSTLNPTMKIGKQIME 275
Query: 118 PLIYHRGM-SREDALDRAMKYLELVGLD--PEIVYRYPHELSGGMKQRVVIATALILEPD 174
++ + + +R++A +++++YL+L ++ EI+ YPHELSGGM QRVVIA+ + L P
Sbjct: 276 GMLINGIVKTRKEAYNKSIEYLKLTKINNPEEIMELYPHELSGGMIQRVVIASIVSLHPK 335
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
I++ DEPTTALD VQA ++++++ L++K + +IFITHDL ++A I++ I+IMYAG+I+
Sbjct: 336 ILVLDEPTTALDPTVQALVLDVIRELQEKFKMCIIFITHDLGVVASIANYISIMYAGQII 395
Query: 235 EIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYA 294
E G +++ + P HPYT L+ ++P +++ ++L I GS P+ LN G F R YA
Sbjct: 396 EEGQRDEILWYPQHPYTWGLIMSMPDVNKG-DRLATIKGSVPSRLNDIVGDAFAIRNDYA 454
Query: 295 MDRCKEEEPKMVEVDKDHYAACWLL 319
+ R E EP+M V + H LL
Sbjct: 455 LTRDFEHEPEMYHVSETHRVKSALL 479
>gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocytogenes]
Length = 325
Score = 195 bits (491), Expect = 5e-49
Identities = 118/320 (36%), Positives = 179/320 (55%), Gaps = 28/320 (8%)
Query: 3 KKILEVKNLKMYYFT-SRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
+K+LE+ NLK Y+ + V+AVDD++FD+ KGE LGL GESGCGKS+ G T++ +
Sbjct: 6 EKLLEIHNLKQYFNKGTASEVRAVDDISFDIYKGETLGLVGESGCGKSTTGRTIIRLYDA 65
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
G G + +G+++ E R +K+ MIFQ +LNP V + E +
Sbjct: 66 TG----GEVIYNGKDVHARKSRKEMLEFR-RKMQMIFQDPYASLNPRVKVKDIIAEGIRI 120
Query: 122 HRGMSR--EDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
H G+++ E+ + LE VGL E RYPHE SGG +QR+ + P+ +IAD
Sbjct: 121 H-GLAKTPEETNKQVYDLLETVGLSKEHAGRYPHEFSGGQRQRIGYRSCACCSPEFIIAD 179
Query: 180 EPTTALD---VVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
EP +ALD V +QAQ++NL+++L+K+ L+ +FI HDLS++ ISD+I +MY GK+V++
Sbjct: 180 EPISALDFLDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMVKYISDRIGVMYFGKLVKL 239
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMD 296
+ +Y+ P HPYT+ LL+AIP + E+ P N G
Sbjct: 240 AFANDLYHAPLHPYTESLLSAIPLPDPNYERTRVRKTYDPTSHNYKDG------------ 287
Query: 297 RCKEEEPKMVEVDKDHYAAC 316
+E KM E+ H+ C
Sbjct: 288 ----DEIKMREIAPGHFVYC 303
>emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter ATP-binding
protein [Streptomyces coelicolor]
Length = 316
Score = 195 bits (491), Expect = 5e-49
Identities = 106/265 (40%), Positives = 170/265 (64%), Gaps = 12/265 (4%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +LE+ L+ F R P AVDDV+ ++ +GE + L GESGCGK+++ L+G+ +P
Sbjct: 22 AGPLLELDGLRKE-FGGRHPNVAVDDVSLEVREGETMALVGESGCGKTTLTRLLLGLLEP 80
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
+GS++ DG+++ L LR R ++ ++ Q +++NP + + EPL+
Sbjct: 81 ----TAGSVRFDGQDLAALTASQLRGVRR--QMQVVLQDPYSSMNPRMRITDIVAEPLVT 134
Query: 122 H----RGM-SREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
H RG +R R + LE VGLD I RYPHE SGG +QRV IA AL L P ++
Sbjct: 135 HDPEARGRRARARNRQRVGELLEAVGLDAGIQDRYPHEFSGGQRQRVSIARALALHPRLL 194
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
+ DEPT+ALDV VQA +++L+ L+++LGL+ +F++H+L+++A+++D++A+M G +VE+
Sbjct: 195 VLDEPTSALDVSVQATVLDLLADLQQRLGLTYVFVSHNLAVVAQVADRVAVMSRGSLVEV 254
Query: 237 GPSEKVYYEPAHPYTQKLLAAIPRL 261
G + V P HPYT++LL A+P L
Sbjct: 255 GEAAAVLRTPRHPYTRQLLDAVPVL 279
>pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655049|gb|AAF93782.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 194 bits (489), Expect = 9e-49
Identities = 104/305 (34%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 22 VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGLP 81
++A++DV+F + K L + GESG GKS+ + M P SG I+ GR+I +
Sbjct: 31 MRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAP----TSGVIEYKGRDIQDI- 85
Query: 82 EDVLRKEIRWQK--ISMIFQGAMNALNPVYTVGYQMIEPLIYHRGMS---REDALDRAMK 136
V R ++ + + M++Q +LNP +T+ + + PL+ H+ ++ +++ +R +
Sbjct: 86 --VSRDDLMHYREGVQMVWQDPFGSLNPTHTIFHHIARPLLIHKKVTPGNKKELEERVYE 143
Query: 137 YLELVGLDPE--IVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQII 194
LE VGL P +YPH+LSGG +QRV +A + + ++V+ADEPT+ LDV ++A ++
Sbjct: 144 LLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVL 203
Query: 195 NLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKL 254
NLM+ +K + +S+++ITHD++ I++ +A+MY G +VE G ++++ ++P HPYT+ L
Sbjct: 204 NLMEEMKFERQMSLLYITHDIATARYIAEDLAVMYVGHMVEWGDTDEIIHDPQHPYTKLL 263
Query: 255 LAAIPRLHEDV-EKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHY 313
++A+P + + EKLE G P GC F RC YA +C+E P++ ++ +H+
Sbjct: 264 VSAVPDPKKSIHEKLEGNKGEIPLWTPNSVGCPFAGRCLYASAKCREALPEVTQLSDNHF 323
Query: 314 AACWL 318
C+L
Sbjct: 324 VRCYL 328
>sp|Q07734|OPPF_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075750|pir||B53290 oligopeptide transport protein
oppF - Lactococcus lactis subsp. lactis
>gi|308851|gb|AAA16164.1| (L18760) ATP binding protein
[Lactococcus lactis] >gi|495178|gb|AAB00534.1| (U09553)
ATP binding protein [Lactococcus lactis]
Length = 319
Score = 190 bits (479), Expect = 1e-47
Identities = 102/266 (38%), Positives = 167/266 (62%), Gaps = 15/266 (5%)
Query: 4 KILEVKNLKMYYFTSRG-------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLM 56
+IL +K+LK+YY G V AVD V + +GE +GL GESG GKS+IG T++
Sbjct: 3 EILNLKDLKVYYPIRSGFFNRVTDNVLAVDGVDLTIHEGETVGLVGESGSGKSTIGKTIV 62
Query: 57 GMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQK-ISMIFQGAMNALNPVYTVGYQM 115
G+ Q + SG + G+++ + +R ++++ K + MIFQ A ++LNP T+ +
Sbjct: 63 GLEQ----MTSGQLIYKGQDV---SKKKIRNQLKYNKDVQMIFQDAFSSLNPRKTIYDII 115
Query: 116 IEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
EP+ + R + L++VGL + + +YP + SGG +QR+ IA A+ P +
Sbjct: 116 AEPIRNFEKIDANTENKRIHELLDIVGLPKQALEQYPFQFSGGQQQRIGIARAVATNPKL 175
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
++ADEP +ALD+ VQAQ++N MK ++K LG++ +FI+HDL ++ ++D IA+M+ G+IVE
Sbjct: 176 IVADEPVSALDLSVQAQVLNFMKLIQKDLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVE 235
Query: 236 IGPSEKVYYEPAHPYTQKLLAAIPRL 261
G ++ EP H YT++LL+AIP +
Sbjct: 236 KGTRRDIFDEPQHIYTKRLLSAIPSI 261
>sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1361734|pir||G64208 oligopeptide transport
ATP-binding protein amiE - Mycoplasma genitalium
>gi|1045756|gb|AAC71297.1| (U39688) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Mycoplasma
genitalium]
Length = 402
Score = 190 bits (477), Expect = 2e-47
Identities = 116/355 (32%), Positives = 187/355 (52%), Gaps = 42/355 (11%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
IL++ +L + + G + AV + +E+G ++G+ GESG GKS +++G +
Sbjct: 21 ILDITDLHVNFKVKDGILHAVRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGF-NDNAQ 79
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI---- 120
+ + +I L + K R +S I Q + +LNP T+G Q+ E +
Sbjct: 80 TKAKLMNFKNVDITKLKKHQW-KYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIYVASK 138
Query: 121 ----------------------------------YHRGMSREDALDRAMKYLELVGLDP- 145
Y + + + + ++ L+ +G++
Sbjct: 139 RRYFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIGINDA 198
Query: 146 -EIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKL 204
+ + +P E SGGM+QR+VIA A+ EPD++IADEPTTALDV +QA+++ L+K+L+ L
Sbjct: 199 KKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQLRDLL 258
Query: 205 GLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPRLHED 264
+++IFI+H++S++A D + +MYAGKIVE G E+++ P HPYT L+++IP +
Sbjct: 259 NITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNPLHPYTWALISSIPEQKDK 318
Query: 265 VEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAACWLL 319
+ L IPG PN+L PP G F R YA+ E P EV K H AA WLL
Sbjct: 319 NKPLTSIPGVIPNMLTPPKGDAFASRNQYALAIDFEYHPPFFEVTKTHKAATWLL 373
>sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|2146480|pir||S73940 oligopeptide transport
ATP-binding protein oppD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674316|gb|AAB96262.1| (AE000058)
oligopeptide transport ATP-binding protein OppD
[Mycoplasma pneumoniae]
Length = 423
Score = 189 bits (474), Expect = 5e-47
Identities = 117/360 (32%), Positives = 196/360 (53%), Gaps = 52/360 (14%)
Query: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
IL++++L + + G ++AV V ++KG ++G+ GESG GKS +++G
Sbjct: 21 ILDIRDLHVSFKVKDGIMQAVRGVDLKVKKGSIVGIVGESGSGKSVCVKSIIGFNDG--- 77
Query: 65 IVSGSIKIDGREIVGLPEDVLRKEIRWQK-----ISMIFQGAMNALNPVYTVGYQMIEPL 119
+ K+ + + + + K+ +WQ +S I Q + +LNP T+G Q+ E +
Sbjct: 78 -AKTTAKLMNFKNIDISK---MKKHQWQYYRGTYVSYISQDPLFSLNPTMTIGRQVKEAI 133
Query: 120 I------YHRGMS------REDALD--------------------------RAMKYLELV 141
Y++ S + + +D + ++ L +
Sbjct: 134 YVSCKRRYYQTKSDLKYDLQTERIDLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFI 193
Query: 142 GLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKR 199
G+D + + +P E SGGM+QR+VIA A+ EPD++IADEPTTALDV +QA+ +NL+K+
Sbjct: 194 GIDQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQ 253
Query: 200 LKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIP 259
L+ L +++IFI+H++S++A D + +MYAG++VE G E+++ P HPYT L+A+IP
Sbjct: 254 LRDLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYTWALMASIP 313
Query: 260 RLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAACWLL 319
+ L IPG PN+L+PP G F R +A+ E +P +V + H AA WLL
Sbjct: 314 EGTDKNAPLTSIPGYIPNMLSPPKGDAFAARNQFALAIDFEHQPPFFDVTETHKAATWLL 373
>gb|AAF73561.1| (AE002315) peptide ABC transporter, ATP-binding protein [Chlamydia
muridarum]
Length = 281
Score = 182 bits (458), Expect = 4e-45
Identities = 106/283 (37%), Positives = 171/283 (59%), Gaps = 19/283 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+K +L+++NL + S + V+ ++ +++ + L L GE+G GK+++ ++G
Sbjct: 1 MSKTLLKIENLVVAIKESNQ--RLVNHLSLTIKQRQSLALVGENGSGKTTVSKAILGFLP 58
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
I SG I G +I L + IR +KIS IFQ AM L P VG Q+IE L
Sbjct: 59 DNCCIQSGKIFYSGTDITRLSRKEFQS-IRGKKISTIFQNAMGTLTPSMRVGTQIIETLR 117
Query: 121 YHRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
+H MS+E+A +A + L V ++ + YP ELSGGM QRV IA AL P+++IA
Sbjct: 118 HHFVMSKEEAFAKARELLVSVHIESPDRCLQLYPFELSGGMCQRVSIAIALATNPELIIA 177
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEP+TALD + QAQ++ ++K++ + +++ ITH+L++++E+ +++AI++ G+IVE GP
Sbjct: 178 DEPSTALDSISQAQVLRVLKQIHQNNNTALLLITHNLALVSELCEEMAIIHHGEIVEQGP 237
Query: 239 SEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNP 281
++ P+HPYTQKL+ AIP++ PNL NP
Sbjct: 238 VHELLRSPSHPYTQKLIRAIPKI--------------PNLYNP 266
>dbj|BAA15129.1| (D90788) Dipeptide transport ATP-binding protein DppF. [Escherichia
coli]
Length = 262
Score = 182 bits (457), Expect = 5e-45
Identities = 103/281 (36%), Positives = 161/281 (56%), Gaps = 25/281 (8%)
Query: 40 LAGESGCGKSSIGFTLMGMPQPP-GRIV-SGSIKIDGREIVGLPEDVLRKEIRWQKISMI 97
+ GESGCGKS++ LMGM QP G+ + SGS +I + M+
Sbjct: 1 IVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRI---------------------MQMV 39
Query: 98 FQGAMNALNPVYTVGYQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSG 157
FQ +++LNP V + EPL + S + A + VG+ PE + R PH SG
Sbjct: 40 FQDPLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSG 99
Query: 158 GMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSI 217
G +QR+ IA AL +PD+++ DEPT+ALD+ VQAQI+NL+ L++ GL+ + I+H++S+
Sbjct: 100 GQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSV 159
Query: 218 LAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSP-P 276
+ +SD++A+MY G+IVE+G +++V PAHPYT+ LL ++P + + +E+ + + P
Sbjct: 160 IRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLP 219
Query: 277 NLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAACW 317
P GC F+ RCP A C+ + + D CW
Sbjct: 220 GNRTLPQGCFFYERCPLATHGCEVRQSLAIRED-GRELRCW 259
>pir||E72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980804|gb|AAD35392.1|AE001712_5 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 316
Score = 180 bits (452), Expect = 2e-44
Identities = 104/299 (34%), Positives = 171/299 (56%), Gaps = 13/299 (4%)
Query: 24 AVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIVGLPED 83
A+D+V+F++ GE+ LAGESGCGK++ L+G+ +P +G + DG ++ +D
Sbjct: 25 AIDNVSFEIGSGEIFSLAGESGCGKTTTAKILLGLEEP----TNGEVLYDGIKL----KD 76
Query: 84 VLRKEIRW-QKISMIFQGAMNALNPVYTVGYQMIEPLI-YHRGMSREDALDRAMKYLELV 141
+ E+ + +K+ + Q + NP V + + ++ + ++++AL + L +V
Sbjct: 77 FVENEMHFLKKVQTVQQNPFSTFNPFRKVEDYLFKTVLRFKMANTKDEALRLIEEKLSVV 136
Query: 142 GLD-PEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLMKRL 200
GL+ EI RYP E SGG QR+ IA AL+ P ++ADEP + +D ++ I+NL + L
Sbjct: 137 GLNFDEIKGRYPSEFSGGQLQRISIARALLTNPSFLVADEPVSMIDASLRISIVNLFRDL 196
Query: 201 KKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPR 260
K++ G+S+++ITHDLS ++DK+AIM+ G IVE+G ++ + P HPYT+ L ++IP
Sbjct: 197 KERFGISILYITHDLSTAYYVADKLAIMFRGSIVEMGRAQDILDTPFHPYTKLLKSSIPV 256
Query: 261 LHEDVEKLEFIP-GSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAACWL 318
+ E E I S GC+F RCP M C+E P +V+ CWL
Sbjct: 257 PDPEYEWDENINLSSTEREEFFAKGCKFASRCPEVMSICRESVPPDFDVN-GRVVKCWL 314
>gb|AAF77616.1|AF151721_2 (AF151721) oligopeptide permease subunit AmiF-like protein
[Streptococcus thermophilus]
Length = 238
Score = 177 bits (445), Expect = 1e-43
Identities = 97/243 (39%), Positives = 156/243 (63%), Gaps = 6/243 (2%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +K++EVK++++ + + AV + F + KGE L GESG GK++IG ++G+
Sbjct: 1 MPEKLVEVKDVEISFGEGKKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLND 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
+G I DG++I G + ++ ++I MIFQ +LN TV Y + E L
Sbjct: 61 TS----NGEIIFDGKKINGYLSHSEKNDLI-RRIQMIFQDPAASLNERATVDYILSEGLY 115
Query: 121 -YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
+H E+ + + ++ VGL E + RYPHE SGG +QR+ IA +L+++PD+VIAD
Sbjct: 116 NFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIGIARSLVMQPDLVIAD 175
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EP +ALDV V+AQ++NL+K+ +K+LGL+ +FI HDLS++ ISD+IA++Y G IVE+ +
Sbjct: 176 EPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAET 235
Query: 240 EKV 242
E++
Sbjct: 236 EEL 238
>pir||H70788 probable peptidetransport system ABC-transporter ATP-binding
protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960087|emb|CAA17985.1| (AL022121) dppD
[Mycobacterium tuberculosis]
Length = 548
Score = 176 bits (443), Expect = 2e-43
Identities = 104/265 (39%), Positives = 157/265 (59%), Gaps = 13/265 (4%)
Query: 2 AKKILEVKNLKMYYFTSRGPV------KAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
A IL V L Y SRG +AVD V+F L + L + GESG GKS++ +
Sbjct: 278 AGDILVVSELTKIYRESRGAPWRRVESRAVDGVSFRLPRASTLAIVGESGSGKSTLARMV 337
Query: 56 MGMPQPPGRIVSGSIKIDGREIVG-LPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQ 114
+G+ QP SG++ DG VG L D + R ++ +FQ ++L+P+Y+V
Sbjct: 338 LGLLQP----TSGTVVFDGTYDVGALARDQVLAFRR--RVQPVFQNPYSSLDPMYSVFRA 391
Query: 115 MIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPD 174
+ EPL H R + ++ V L I+ R P ELSGG +QRV IA AL L P+
Sbjct: 392 IEEPLRVHHVGDRRQRQRAVRELVDQVALPSSILGRRPRELSGGQRQRVAIARALALRPE 451
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
+++ DE +ALDV+VQAQI++L+ L+ LGL+ +FI+HDL+++ +I+D + +M AG++V
Sbjct: 452 VLVCDEAVSALDVLVQAQILDLLADLQADLGLTYLFISHDLAVIRQIADDVLVMRAGRVV 511
Query: 235 EIGPSEKVYYEPAHPYTQKLLAAIP 259
E +E+V+ P H YT++LL AIP
Sbjct: 512 EHASTEEVFSRPRHEYTRQLLQAIP 536
Score = 169 bits (424), Expect = 4e-41
Identities = 100/262 (38%), Positives = 154/262 (58%), Gaps = 8/262 (3%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L V+ L++ + T V VD + G+ + + GESG GKS+ ++G+
Sbjct: 5 AAPLLSVEGLEVTFGTDAPAVCGVD---LAVRSGQTVAVVGESGSGKSTTAAAILGLLPA 61
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
GRI +G + DGR+I G LR IR ++I + Q M LNPV+ VG+Q+ E L
Sbjct: 62 GGRITAGRVVFDGRDITGADAKRLRS-IRGREIGYVPQDPMTNLNPVWKVGFQVTEAL-- 118
Query: 122 HRGMSREDALDRAMKYLELVGL-DP-EIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
A RA++ L GL DP + RYPH+LSGGM QR +IA L P ++IAD
Sbjct: 119 RANTDGRAARRRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIAD 178
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPT+ALDV VQ Q+++ ++ L +LG +++ ITHDL++ A+ ++ + ++ G +VE G +
Sbjct: 179 EPTSALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAA 238
Query: 240 EKVYYEPAHPYTQKLLAAIPRL 261
+ + P H YT++L+AA P L
Sbjct: 239 QSILQSPQHEYTRRLVAAAPSL 260
>pir||E71545 probable oligopeptide transport ATPase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328607|gb|AAC67793.1|
(AE001293) Oligopeptide Transport ATPase [Chlamydia
trachomatis]
Length = 277
Score = 176 bits (441), Expect = 4e-43
Identities = 96/263 (36%), Positives = 166/263 (62%), Gaps = 5/263 (1%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ +L++ NL + S + V+ ++ +++ + + L GE+G GK+++ ++G
Sbjct: 1 MSEDLLKIDNLVVSVKDSNQ--RLVNHLSLTIKRCQSMALVGENGSGKTTVSKAVLGFLP 58
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
I SG I +I L L+ IR +KI+ IFQ AM L P VG Q++E L
Sbjct: 59 DNCYIQSGRILYSSTDITRLSRRQLQT-IRGKKIATIFQNAMGTLTPSMRVGAQIVETLR 117
Query: 121 YHRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
+H MS+E+A +A + LE V ++ + YP ELSGGM QRV IA AL P+++IA
Sbjct: 118 HHFDMSKEEAFSKARELLESVHIESPDRCLQLYPFELSGGMCQRVSIAIALATNPELIIA 177
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEP+TALD + QAQ++ ++ ++ + +++ ITH+L++++E+ +++AI+ G+IVE GP
Sbjct: 178 DEPSTALDSISQAQVLRVLTQIHQNHSTALLLITHNLALVSELCEEMAIIRYGEIVEQGP 237
Query: 239 SEKVYYEPAHPYTQKLLAAIPRL 261
+++ + P+HPYTQ+L+ AIP++
Sbjct: 238 VQELLHSPSHPYTQQLIRAIPKI 260
>gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 324
Score = 174 bits (437), Expect = 1e-42
Identities = 106/326 (32%), Positives = 178/326 (54%), Gaps = 24/326 (7%)
Query: 5 ILEVKNLKMYYFTSRGPVK-----AVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMP 59
++E+K + + + G K A+ DV+ + +G++L + GESG GK+++G ++G+
Sbjct: 3 LMELKGVSVIFEDKVGLFKKRKFYALKDVSLSMNQGDLLIVLGESGAGKTTLGRVIVGLQ 62
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
+P SG + DG I + +K + + +I Q + L TV ++ P+
Sbjct: 63 KP----TSGEVVYDGYNIWKNKRKIFKKYRK--DVQLIPQDPYSTLPFNKTVEEILVAPI 116
Query: 120 IYHRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALILEPDIVI 177
+ +++++ R + LELV L P E + +YPH+LSGG KQR+ IA +L + P I++
Sbjct: 117 LRWEKINKDELRKRLINLLELVKLTPAEEFLGKYPHQLSGGQKQRLSIARSLSVNPRIIV 176
Query: 178 ADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSI---LAEISDK--IAIMYAGK 232
ADEP T +D ++ I+N + +K +L L+M+FITHD+ I + DK +M+AG+
Sbjct: 177 ADEPVTMVDASLRIGILNTLAEIKNRLNLTMVFITHDIPIARYFYHLFDKGNTIVMFAGR 236
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCP 292
IVE E++ +P HPYT L+ P + +++ N GC + RCP
Sbjct: 237 IVERADLEEILKDPLHPYTNDLIKLTPSIDNLYKEINV----KINYERVEKGCPYRLRCP 292
Query: 293 YAMDRCKEEEPKMVEVDKDHYAACWL 318
+AMD CK EEPK+ + H AC+L
Sbjct: 293 FAMDICKNEEPKLFKY--SHEVACFL 316
>sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|7445934|pir||E64877 peptide transport system
ATP-binding protein sapF - Escherichia coli
>gi|470683|gb|AAA17671.1| (U08190) Shows similarity with
ATP-binding proteins from other ABC-transport operons,
Swiss Prot Accession Numbers P24137, P08007, P04285,
P24136 [Escherichia coli] >gi|1279404|emb|CAA65941.1|
(X97282) SapF protein [Escherichia coli]
>gi|1742103|dbj|BAA14843.1| (D90766) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1742112|dbj|BAA14851.1| (D90767) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1787547|gb|AAC74372.1| (AE000227) putative
ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 268
Score = 157 bits (392), Expect = 2e-37
Identities = 92/261 (35%), Positives = 149/261 (56%), Gaps = 14/261 (5%)
Query: 1 MAKKILEVKNLKMYY-----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
M + +LEV+NL + + R V+AV ++F L +G+ L + GE+G GKS++ L
Sbjct: 1 MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKML 60
Query: 56 MGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQM 115
GM +P SG + ID P R Q+I MIFQ +LNP + +
Sbjct: 61 AGMIEP----TSGELLIDDH-----PLHFGDYSFRSQRIRMIFQDPSTSLNPRQRISQIL 111
Query: 116 IEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
PL + + E + ++ + +VGL P+ V YPH L+ G KQR+ +A ALIL P +
Sbjct: 112 DFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKV 171
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
+IADE +LD+ +++Q+INLM L++K G+S I++T + ++ ISD++ +M+ G++VE
Sbjct: 172 IIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVE 231
Query: 236 IGPSEKVYYEPAHPYTQKLLA 256
G + V P H T++L+A
Sbjct: 232 RGSTADVLASPLHELTKRLIA 252
>sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|628821|pir||S39589 peptide transport system
ATP-binding protein sapF - Salmonella typhimurium
>gi|414212|emb|CAA52288.1| (X74212) sapF [Salmonella
typhimurium]
Length = 268
Score = 153 bits (383), Expect = 2e-36
Identities = 91/261 (34%), Positives = 147/261 (55%), Gaps = 14/261 (5%)
Query: 1 MAKKILEVKNLKMYY-----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
M + +LEV+NL + + R V AV ++F L + + L + GE+G GKS++ L
Sbjct: 1 MVETLLEVRNLSKTFRYRTGWFRRQTVDAVKPLSFTLRERQTLAIIGENGSGKSTLAKML 60
Query: 56 MGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQM 115
GM +P SG + ID P R Q+I MIFQ +LNP + +
Sbjct: 61 AGMIEP----TSGELLIDDH-----PLHYGDYSFRSQRIRMIFQDPSTSLNPRQRISQIL 111
Query: 116 IEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
PL + + E + ++ + +VGL P+ V YPH L+ G KQR+ +A ALIL P +
Sbjct: 112 DFPLRLNTDLEPEQRRKQIVETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKV 171
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
+IADE +LD+ +++Q+INLM L++K G+S I++T + ++ ISD++ +M+ G++VE
Sbjct: 172 IIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVE 231
Query: 236 IGPSEKVYYEPAHPYTQKLLA 256
G + V P H T++L+A
Sbjct: 232 RGSTADVLASPLHELTRRLIA 252
>emb|CAA10913.1| (AJ222649) sapF [Erwinia chrysanthemi]
Length = 269
Score = 146 bits (366), Expect = 2e-34
Identities = 94/265 (35%), Positives = 149/265 (55%), Gaps = 20/265 (7%)
Query: 1 MAKKILEVKNLKMYY-----FTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
M + +LE +NL + + R V+AV V+F L + + L + GE+G GKS++ L
Sbjct: 1 MVETLLEARNLTKTFRYRTGWFRRQHVQAVKSVSFTLRERQTLAIIGENGSGKSTLAKML 60
Query: 56 MGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQM 115
G+ P SG + ID P R Q+I M Q + +LNP +G +
Sbjct: 61 SGVIPP----TSGELVIDDH-----PLQYGDYHYRSQRIRMSIQDSATSLNPRQRIGQLL 111
Query: 116 IEPLIYHRGMS---REDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
PL + ++ RE A++ A++ VGL + YPH L+ G KQR+ +A ALIL+
Sbjct: 112 ELPLRLNTDLTPQEREKAINLALRQ---VGLRADHATYYPHALAPGQKQRIGLARALILQ 168
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
P +++ADE +LD+ V++QIINLM L++K G+S I++T L ++ ISD+I +M AG+
Sbjct: 169 PKVIVADEVLASLDMSVRSQIINLMLELQEKHGISYIYVTQHLGMMKHISDQILVMQAGE 228
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAA 257
+VE G + V P H T++L+A+
Sbjct: 229 VVERGSTADVLAAPLHDLTKRLIAS 253
>gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 267
Score = 145 bits (362), Expect = 7e-34
Identities = 81/276 (29%), Positives = 160/276 (57%), Gaps = 19/276 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPV-----KAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTL 55
M+ K++E+ ++ + +G + DV D+ K E++G+ G SG GK+ I + +
Sbjct: 1 MSDKLIELIHVYKDFIVRKGVFGKEHRPGIWDVNMDIRKNEIVGMVGGSGGGKTVIAWMI 60
Query: 56 MGMPQPP-GRIVSGSIKIDGREIVGLPEDVLRKEIRWQK--ISMIFQGAMNALNPVYTVG 112
+G+ +P G I+ + +D + +K+++ + + ++FQ ++L+P +TV
Sbjct: 61 VGLLKPTKGSIIYTPMGLDVTK-------ANKKQLKQYRADVQLVFQDPYSSLDPAHTVK 113
Query: 113 YQMIEPLIYHRGMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIATALI 170
+ + PL ++ R D +R + L V L P + + +YP +LSGG +QRV +A L
Sbjct: 114 WHIERPLKIYK--YRGDIEERIKELLREVALTPPEDFLNKYPFQLSGGQRQRVYLARVLA 171
Query: 171 LEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYA 230
L P ++IADEP + +D ++A +++L KRL+ + G+S+++ITHD++ + ++D++ ++
Sbjct: 172 LNPKVLIADEPVSNVDASIRASLLDLFKRLRDEKGISIMYITHDIATIGYVADRVYVVKN 231
Query: 231 GKIVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVE 266
G+IVE G + P H YT+ L+ A+P ++ +E
Sbjct: 232 GRIVEEGDVGTIISHPKHEYTRLLIEAVPDPYKRIE 267
>sp|P16678|PHNK_ECOLI PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN PHNK
>gi|96281|pir||C35719 phnK protein - Escherichia coli
>gi|147206|gb|AAA24349.1| (J05260) HisP-like nucleotide
binding protein (phnK) [Escherichia coli]
>gi|216600|dbj|BAA14271.1| (D90227) ATP-binding protein
[Escherichia coli]
Length = 252
Score = 142 bits (355), Expect = 5e-33
Identities = 86/258 (33%), Positives = 142/258 (54%), Gaps = 9/258 (3%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M + +L V NL Y P K DV+FDL GEVLG+ GESG GK+++ ++
Sbjct: 1 MNQPLLSVNNLTHLY----APGKGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLT 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P G I + R + + E R+ +R + ++ Q ++ L + G + E L+
Sbjct: 57 PQ----QGEIHYENRSLYAMSEADRRRLLRTEW-GVVHQHPLDGLRRQVSAGGNIGERLM 111
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
D A K+LE V + + P SGGM+QR+ IA L+ P +V DE
Sbjct: 112 ATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDE 171
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PT LDV VQA++++L++ L +L L+++ +THDL + ++D++ +M G++VE G ++
Sbjct: 172 PTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTD 231
Query: 241 KVYYEPAHPYTQKLLAAI 258
+V +P HPYTQ L++++
Sbjct: 232 RVLDDPHHPYTQLLVSSV 249
>pir||B83224 probable ATP-binding component of ABC transporter PA3376 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9949511|gb|AAG06764.1|AE004759_11 (AE004759)
probable ATP-binding component of ABC transporter
[Pseudomonas aeruginosa]
Length = 271
Score = 141 bits (353), Expect = 8e-33
Identities = 88/262 (33%), Positives = 145/262 (54%), Gaps = 16/262 (6%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
+ +L V+ L Y GP K +V FDL GEVLG+ GESG GKS++ L G P
Sbjct: 17 RPLLSVRGLTRLY----GPEKGCQEVDFDLYPGEVLGIVGESGSGKSTLLSLLSGRCPPD 72
Query: 63 GRIVSGSIKIDGREIVGL--PEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL- 119
V+ + DG + L + R+ + + + Q + L + G + E L
Sbjct: 73 AGTVA--YRDDGDRWLDLYAASEAERRTLLRTEWGFVEQNPRDGLRMGVSAGANIGERLM 130
Query: 120 ---IYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
+ H G R+ LD +LE V +DP + P SGGM+QR+ IA L+ P +V
Sbjct: 131 AQGVRHYGRLRQAGLD----WLEQVEIDPLRIDDLPRTFSGGMQQRLQIARNLVSAPRLV 186
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
DEPT LDV VQA++++L++ L ++L L+++ +THDL++ ++D++ +M ++VE
Sbjct: 187 FMDEPTGGLDVSVQARLLDLLRGLVRELDLAVVIVTHDLAVARLLADRLMVMRRSRVVEA 246
Query: 237 GPSEKVYYEPAHPYTQKLLAAI 258
G ++++ +P HPYTQ L++++
Sbjct: 247 GLTDQILDDPQHPYTQLLVSSV 268
>pir||S56325 hisP protein-like nucleotide-binding protein phnK - Escherichia
coli >gi|536941|gb|AAA96996.1| (U14003) HisP-like
nucleotide binding protein (ATP-binding protein)
[Escherichia coli] >gi|1790535|gb|AAC77058.1| (AE000482)
ATP-binding component of phosphonate transport
[Escherichia coli K12]
Length = 252
Score = 140 bits (350), Expect = 2e-32
Identities = 86/258 (33%), Positives = 141/258 (54%), Gaps = 9/258 (3%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M + +L V NL Y P K DV+FDL GEVLG+ GESG GK++ ++
Sbjct: 1 MNQPLLSVNNLTHLY----APGKGFSDVSFDLWPGEVLGIVGESGSGKTTQLKSISARLT 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P G I + R + + E R+ +R + ++ Q ++ L + G + E L+
Sbjct: 57 PQ----QGEIHYENRSLYAMSEADRRRLLRTEW-GVVHQHPLDGLRRQVSAGGNIGERLM 111
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
D A K+LE V + + P SGGM+QR+ IA L+ P +V DE
Sbjct: 112 ATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDE 171
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PT LDV VQA++++L++ L +L L+++ +THDL + ++D++ +M G++VE G ++
Sbjct: 172 PTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVESGLTD 231
Query: 241 KVYYEPAHPYTQKLLAAI 258
+V +P HPYTQ L++++
Sbjct: 232 RVLDDPHHPYTQLLVSSV 249
>sp|P46920|OPAA_BACSU GLYCINE BETAINE TRANSPORT ATP-BINDING PROTEIN OPUAA
>gi|2119776|pir||I40535 probable glycine betaine/proline
ABC transporter - Bacillus subtilis
>gi|984803|gb|AAC43455.1| (U17292) ATPase [Bacillus
subtilis]
Length = 418
Score = 136 bits (338), Expect = 5e-31
Identities = 88/254 (34%), Positives = 147/254 (57%), Gaps = 9/254 (3%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A ++L K + G V+ F++ GE+ + G SG GKS++ L + +P
Sbjct: 26 AVQMLANGKTKKEILKATGSTVGVNQADFEVYDGEIFVIMGLSGSGKSTLVRMLNRLIEP 85
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
+G+I IDG I + +D LR E+R +KISM+FQ AL P T+ + E +
Sbjct: 86 ----TAGNIYIDGDMITNMSKDQLR-EVRRKKISMVFQKF--ALFPHRTI-LENTEYGLE 137
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
+G+ +++ +A++ L+LVGL+ ++YP +LSGGM+QRV +A AL +PDI++ DE
Sbjct: 138 LQGVDKQERQQKALESLKLVGLEG-FEHQYPDQLSGGMQQRVGLARALTNDPDILLMDEA 196
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
+ALD +++ + + + L +G ++IFITHDL I D+I +M G IV+IG E+
Sbjct: 197 FSALDPLIRKDMQDELLDLHDNVGKTIIFITHDLDEALRIGDRIVLMKDGNIVQIGTPEE 256
Query: 242 VYYEPAHPYTQKLL 255
+ P++ Y +K +
Sbjct: 257 ILMNPSNEYVEKFV 270
>dbj|BAA08932.1| (D50453) glycine betain/L-proline transport ATPase [Bacillus
subtilis] >gi|2632584|emb|CAB12092.1| (Z99105) glycine
betaine ABC transporter (ATP-binding protein) [Bacillus
subtilis]
Length = 418
Score = 136 bits (338), Expect = 5e-31
Identities = 88/254 (34%), Positives = 147/254 (57%), Gaps = 9/254 (3%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A ++L K + G V+ F++ GE+ + G SG GKS++ L + +P
Sbjct: 26 AVQMLANGKAKKEILKATGSTVGVNQADFEVYDGEIFVIMGLSGSGKSTLVRMLNRLIEP 85
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
+G+I IDG I + +D LR E+R +KISM+FQ AL P T+ + E +
Sbjct: 86 ----TAGNIYIDGDMITNMSKDQLR-EVRRKKISMVFQKF--ALFPHRTI-LENTEYGLE 137
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
+G+ +++ +A++ L+LVGL+ ++YP +LSGGM+QRV +A AL +PDI++ DE
Sbjct: 138 LQGVDKQERQQKALESLKLVGLEG-FEHQYPDQLSGGMQQRVGLARALTNDPDILLMDEA 196
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
+ALD +++ + + + L +G ++IFITHDL I D+I +M G IV+IG E+
Sbjct: 197 FSALDPLIRKDMQDELLDLHDNVGKTIIFITHDLDEALRIGDRIVLMKDGNIVQIGTPEE 256
Query: 242 VYYEPAHPYTQKLL 255
+ P++ Y +K +
Sbjct: 257 ILMNPSNEYVEKFV 270
>gi|10955047 ophD [Agrobacterium tumefaciens] >gi|7445601|pir||S77575
oligopeptide transport protein homolog ophD -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215734|gb|AAC44511.1| (AF242881) ophD
[Agrobacterium tumefaciens]
Length = 259
Score = 134 bits (335), Expect = 1e-30
Identities = 82/267 (30%), Positives = 139/267 (51%), Gaps = 23/267 (8%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L+++NL++ + P VDDV+ ++ +G+VLGL GESG GKS+IG +G +P
Sbjct: 3 ASTLLDIRNLRIDAASRTNPTLIVDDVSLEVCRGKVLGLIGESGAGKSTIGLAALGYLRP 62
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
R++SGS+ DG ++ E + R ++I+ + Q A A NP + + Q++E +
Sbjct: 63 GTRLLSGSVTFDGVDLFTRTE-AQHRLFRGRRIAYVAQSAAAAFNPAFRLIDQLVEASLR 121
Query: 122 HR-----------GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALI 170
R G++R +R L H+ +G L
Sbjct: 122 ERRPNNVRHRAGNGLARSSRPEREDNCDALSSRSVGRTVAARHDRNG-----------LC 170
Query: 171 LEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYA 230
PD++I DEPTTALD+ Q + +++ + I+I+HDL ++A+I+D I ++
Sbjct: 171 GRPDLIIFDEPTTALDIATQRDVFTAIRKAIAVEATAAIYISHDLPLVADIADDIHVLRN 230
Query: 231 GKIVEIGPSEKVYYEPAHPYTQKLLAA 257
G+ VE GP+ + +PA PYT+ L +A
Sbjct: 231 GRSVERGPAVTIMRDPAQPYTKALTSA 257
>sp|P14175|PROV_ECOLI GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BINDING PROTEIN PROV
>gi|72467|pir||BVECPV glycine betaine/L-proline
transport ATP-binding protein proV - Escherichia coli
>gi|147373|gb|AAA24427.1| (M24856) proV peptide
[Escherichia coli] >gi|1789032|gb|AAC75724.1| (AE000352)
ATP-binding component of transport system for glycine,
betaine and proline [Escherichia coli K12]
>gi|1800065|dbj|BAA16542.1| (D90891) GLYCINE
BETAINE/L-PROLINE TRANSPORT ATP-BINDING PROTEIN PROV.
[Escherichia coli]
Length = 400
Score = 129 bits (321), Expect = 4e-29
Identities = 86/263 (32%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A K +E K G V D + +E+GE+ + G SG GKS++ L + +P
Sbjct: 21 AFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP 80
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTV------GYQM 115
G + IDG +I + + LR E+R +KI+M+FQ AL P TV G ++
Sbjct: 81 ----TRGQVLIDGVDIAKISDAELR-EVRRKKIAMVFQSF--ALMPHMTVLDNTAFGMEL 133
Query: 116 IEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
G++ E+ ++A+ L VGL+ + YP ELSGGM+QRV +A AL + PDI
Sbjct: 134 A-------GINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDI 185
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
++ DE +ALD +++ ++ + + +L+ K +++FI+HDL I D+IAIM G++V+
Sbjct: 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245
Query: 236 IGPSEKVYYEPAHPYTQKLLAAI 258
+G +++ PA+ Y + +
Sbjct: 246 VGTPDEILNNPANDYVRTFFRGV 268
>pir||B45917 nucleotide-binding protein proV - Salmonella typhimurium (fragment)
>gi|552022|gb|AAA88621.1| (M26063) proV gene product
[Salmonella typhimurium]
Length = 290
Score = 128 bits (318), Expect = 1e-28
Identities = 85/263 (32%), Positives = 144/263 (54%), Gaps = 21/263 (7%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A K +E K G V D + +E+GE+ + G SG GKS++ L + +P
Sbjct: 21 AFKYIEKGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP 80
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTV------GYQM 115
G + IDG +I + + LR E+R +KI+M+FQ AL P TV G ++
Sbjct: 81 ----TRGQVLIDGVDIAKISDAELR-EVRRKKIAMVFQSF--ALMPHMTVLDNTAFGMEL 133
Query: 116 IEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
G++ ++ ++A+ L VGL+ + YP ELSGGM+QRV +A AL + PDI
Sbjct: 134 A-------GIAAQERREKALDALRQVGLE-NYAHAYPDELSGGMRQRVGLARALAINPDI 185
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
++ DE +ALD +++ ++ + + +L+ K +++FI+HDL I D+IAIM G++V+
Sbjct: 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245
Query: 236 IGPSEKVYYEPAHPYTQKLLAAI 258
+G +++ PA+ Y + +
Sbjct: 246 VGTPDEILNNPANDYVRTFFRGV 268
>gb|AAD29104.1|AF039835_1 (AF039835) ATPase homolog GbuA [Listeria monocytogenes]
Length = 397
Score = 127 bits (317), Expect = 1e-28
Identities = 104/314 (33%), Positives = 161/314 (51%), Gaps = 27/314 (8%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L K G V+ +F +E+GE+ + G SG GKS++ L + +P
Sbjct: 20 ASSLLSQGKSKTDILKETGATIGVNKASFSVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP 79
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
SG I +DG+E+ L + L E+R + +SM+FQ L P T+ + +E +
Sbjct: 80 ----TSGKIWLDGKELSSLNKKELL-EVRRKSMSMVFQNF--GLFPNRTIN-RNVEYGLE 131
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
+GM +E+ A + L LVGL +YP +LSGGM+QRV +A AL PDI++ DE
Sbjct: 132 IQGMDKEEREKNAAESLALVGL-AGYGDQYPSQLSGGMQQRVGLARALANNPDILLMDEA 190
Query: 182 TTALDVV----VQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIG 237
+ALD + +Q Q+++L ++KK ++IFITHDL I D I IM G +V+ G
Sbjct: 191 FSALDPLNRKDMQDQLLDLQDKMKK----TIIFITHDLDEALRIGDHIMIMRDGSVVQTG 246
Query: 238 PSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCP-YAMD 296
E++ PA+ Y +K + EDV++ + S N++ P F P A+
Sbjct: 247 SPEEILAHPANEYVEKFI-------EDVDRSKVYTAS--NVMIRPEIVNFEKDGPRVALK 297
Query: 297 RCKEEEPKMVEVDK 310
R +E V V K
Sbjct: 298 RMREAGTSSVFVVK 311
>sp|P17328|PROV_SALTY GLYCINE BETAINE/L-PROLINE TRANSPORT ATP-BINDING PROTEIN PROV
>gi|72466|pir||QREBVT glycine betaine/proline transport
protein proV - Salmonella typhimurium
>gi|47831|emb|CAA36921.1| (X52693) proV protein (AA
1-400) [Salmonella typhimurium]
Length = 400
Score = 127 bits (316), Expect = 2e-28
Identities = 92/295 (31%), Positives = 155/295 (52%), Gaps = 24/295 (8%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A K +E K G V D + +E+GE+ + G SG GKS++ L + +P
Sbjct: 21 AFKYIEKGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP 80
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTV------GYQM 115
G + IDG +I + + LR E+R +KI+M+FQ AL P TV G ++
Sbjct: 81 ----TRGQVLIDGVDIAKISDAELR-EVRRKKIAMVFQSF--ALMPHMTVLDNTAFGMEL 133
Query: 116 IEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
G++ ++ ++A+ L VGL+ + YP ELSGGM+QRV +A AL + PDI
Sbjct: 134 A-------GIAAQERREKALDALRQVGLE-NYRHAYPDELSGGMRQRVGLARALAINPDI 185
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
++ DE +ALD +++ ++ + + +L+ K +++FI+HDL I D+IAIM G++V+
Sbjct: 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245
Query: 236 IGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPR 290
+G +++ PA+ Y + + + + + SP L+ G F PR
Sbjct: 246 VGTPDEILNNPANDYVRTFFRGVD-ISQVFSAKDIARRSPVGLIRKTPG--FGPR 297
>pir||B75082 phosphate abc transporter, ATP-binding protein (pstb) PAB0700 -
Pyrococcus abyssi (strain Orsay)
>gi|5458471|emb|CAB49959.1| (AJ248286) phosphate ABC
transporter, ATP-binding protein (pstB) [Pyrococcus
abyssi]
Length = 280
Score = 125 bits (311), Expect = 7e-28
Identities = 86/260 (33%), Positives = 137/260 (52%), Gaps = 21/260 (8%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSI--GFTLMGM 58
M + +E +NL++YY G + + + + K V L G SGCGKS++ F +
Sbjct: 28 MKEFAIETRNLRIYY----GSNEVIKGINLKIPKNVVFALMGPSGCGKSTLLRAFNRLLD 83
Query: 59 PQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPV-YTVGYQMIE 117
P + V G ++I G I D +R +++ M+FQ NP + Y+ +
Sbjct: 84 LNPEAK-VEGEVRISGVNIYSPDVDPIRVR---REVGMVFQYP----NPFPHLTIYENVA 135
Query: 118 PLIYHRGMSREDALDRAMKY-LELVGLDPEIVYR---YPHELSGGMKQRVVIATALILEP 173
+ G+++ LD +K+ L+ L E+ R YP LSGG KQR+VIA L ++P
Sbjct: 136 IGVKLNGLAKGKELDEIVKWALKKATLWDEVKNRLKDYPANLSGGQKQRLVIARVLAMKP 195
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
I++ DEPT +D V +I L+ LKK +++ +TH + A +SD +A +Y GKI
Sbjct: 196 KIILMDEPTANIDPVGTRKIEELLFELKK--DYTIVLVTHSPAQAARVSDYVAFIYMGKI 253
Query: 234 VEIGPSEKVYYEPAHPYTQK 253
VE+GP+ KV+ P H T+K
Sbjct: 254 VEVGPTRKVFENPEHELTEK 273
>sp|P45171|POTA_HAEIN SPERMIDINE/PUTRESCINE TRANSPORT ATP-BINDING PROTEIN POTA
>gi|1075318|pir||B64118 spermidine/putrescine transport
protein potA - Haemophilus influenzae (strain Rd KW20)
>gi|1574806|gb|AAC22991.1| (U32813)
spermidine/putrescine ABC transporter, ATP-binding
protein (potA) [Haemophilus influenzae Rd]
Length = 381
Score = 124 bits (308), Expect = 1e-27
Identities = 76/256 (29%), Positives = 144/256 (55%), Gaps = 19/256 (7%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
K I+E++++K Y G ++D + GE + + G SGCGK+++ L G+ +
Sbjct: 17 KPIIELRSIKKSY----GSNTIINDFNLTINNGEFVTILGPSGCGKTTVLRLLAGLEE-- 70
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
+ SGSI +DG +I +P + + I+ +FQ AL P T+ ++ + +
Sbjct: 71 --LDSGSIILDGEDITNVPAEK-------RHINTVFQSY--ALFPHMTI-FENVAFGLRM 118
Query: 123 RGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
+ + E+ R ++ L +V L+ E+ R P +LSGG +QR+ IA A++ +P +++ DE
Sbjct: 119 QKVPNEEIKPRVLEALRMVQLE-EMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESL 177
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
+ALD ++ Q+ +K L+++LG++ IF+THD +SD+I ++ GKI + G ++
Sbjct: 178 SALDYKLRKQMQQELKMLQRQLGITFIFVTHDQEEAITMSDRIVLLRKGKIAQDGSPREI 237
Query: 243 YYEPAHPYTQKLLAAI 258
Y +PA+ + + + I
Sbjct: 238 YEDPANLFVARFIGEI 253
>sp|P02915|HISP_SALTY HISTIDINE TRANSPORT ATP-BINDING PROTEIN HISP >gi|72452|pir||QREBPT
histidine transport protein hisP - Salmonella
typhimurium >gi|47734|emb|CAA24662.1| (V01373) reading
frame of hisP [Salmonella typhimurium]
>gi|154128|gb|AAA75581.1| (J01805) hisP gene product
[Salmonella typhimurium] >gi|223502|prf||0809313D
protein hidP [Salmonella typhimurium]
Length = 258
Score = 123 bits (307), Expect = 2e-27
Identities = 82/263 (31%), Positives = 144/263 (54%), Gaps = 19/263 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ L V +L Y G + + V+ G+V+ + G SG GKS+ + + +
Sbjct: 2 MSENKLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57
Query: 61 PPGRIVSGSIKIDGREIVGLPE--------DVLRKEIRWQKISMIFQGAMNALNPVYTVG 112
P G+I ++G+ I + + D + + +++M+FQ N + + TV
Sbjct: 58 PS----EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH-FNLWSHM-TVL 111
Query: 113 YQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
++E I G+S+ DA +RA+KYL VG+D +YP LSGG +QRV IA AL +E
Sbjct: 112 ENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
PD+++ DEPT+ALD + +++ +M++L ++ G +M+ +TH++ +S + ++ GK
Sbjct: 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGK 230
Query: 233 IVEIGPSEKVYYEPAHPYTQKLL 255
I E G E+V+ P P Q+ L
Sbjct: 231 IEEEGDPEQVFGNPQSPRLQQFL 253
>sp|P55662|Y4TH_RHISN PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN Y4TH
>gi|2182638|gb|AAB91861.1| (AE000098) Y4tH [Rhizobium
sp. NGR234]
Length = 257
Score = 123 bits (307), Expect = 2e-27
Identities = 83/265 (31%), Positives = 144/265 (54%), Gaps = 18/265 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+ I+ +K Y G ++++ F++ +GE + + G SG GKS++ LM +
Sbjct: 1 MSDSIIVFDKVKKAY----GNFTVINELDFEVRRGEKVSIIGPSGSGKSTVLRILMTLEG 56
Query: 61 PPGRIVSGSIKIDGREIV-----GLPEDVLRKEIRWQK--ISMIFQGAMNALNPVYTVGY 113
I G++ + G + G K +R + + M+FQ L P TV
Sbjct: 57 ----INDGAVYVGGEPLWHELKNGSMMPATEKHLRKMRTQLGMVFQ--QFNLFPHMTVLR 110
Query: 114 QMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
+ E G+S+E+A RA + LELVGL + +++P +LSGG +QRV IA AL + P
Sbjct: 111 NLTEAPRVVLGLSKEEARRRAEELLELVGL-VDHAHKFPAQLSGGQQQRVGIARALAMRP 169
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
I++ DEPT+ALD + +++N+++RL + L+M+ +TH++ EISD++ G+I
Sbjct: 170 KIMLFDEPTSALDPELVGEVLNVIRRLAAEHDLTMLMVTHEMRFAREISDRVCFFDKGRI 229
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAI 258
E G E+++ +P T++ L A+
Sbjct: 230 REEGTPEQLFSQPKEERTREFLKAV 254
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 123 bits (307), Expect = 2e-27
Identities = 82/263 (31%), Positives = 144/263 (54%), Gaps = 19/263 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ L V +L Y G + + V+ G+V+ + G SG GKS+ + + +
Sbjct: 2 MSENKLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57
Query: 61 PPGRIVSGSIKIDGREIVGLPE--------DVLRKEIRWQKISMIFQGAMNALNPVYTVG 112
P G+I ++G+ I + + D + + +++M+FQ N + + TV
Sbjct: 58 PS----EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH-FNLWSHM-TVL 111
Query: 113 YQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
++E I G+S+ DA +RA+KYL VG+D +YP LSGG +QRV IA AL +E
Sbjct: 112 ENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
PD+++ DEPT+ALD + +++ +M++L ++ G +M+ +TH++ +S + ++ GK
Sbjct: 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGK 230
Query: 233 IVEIGPSEKVYYEPAHPYTQKLL 255
I E G E+V+ P P Q+ L
Sbjct: 231 IEEEGDPEQVFGNPQSPRLQQFL 253
>pir||C75369 amino acid ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459415|gb|AAF11206.1|AE002008_1 (AE002008) amino
acid ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 265
Score = 122 bits (304), Expect = 4e-27
Identities = 83/259 (32%), Positives = 138/259 (53%), Gaps = 18/259 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+ + I+ +N++ ++ G A+ V + +GEV+ + G SG GKS+ T+ +
Sbjct: 21 VGEPIIVAQNVQKHF----GTFHALRGVNLTVRQGEVVVIIGPSGSGKSTFIRTINALDP 76
Query: 61 PPGRIVSGSIKIDGREIVGLPE-DVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
G GSI +DG + G D +R+E+ M+FQ L P TV +
Sbjct: 77 HDG----GSITVDGLPLQGARNLDAIRREV-----GMVFQSFN--LFPHLTVLDNITLAP 125
Query: 120 IYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
RG+ + A R + L VG++ E Y++P +LSGG +QRV IA AL +EP I++ D
Sbjct: 126 TRVRGVDKAQAQARGLDLLRRVGIE-EQAYKFPAQLSGGQQQRVAIARALAMEPKIMLFD 184
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPS 239
EPT+ALD + +++++MK L + G++M+ +TH++ E++D+I G IVE
Sbjct: 185 EPTSALDPEMIKEVLDVMKEL-ARTGMTMLVVTHEMGFAREVADRILFFDQGNIVEDTTP 243
Query: 240 EKVYYEPAHPYTQKLLAAI 258
E Y P H ++ L+ I
Sbjct: 244 EAFYQNPQHERARQFLSKI 262
>sp|P07109|HISP_ECOLI HISTIDINE TRANSPORT ATP-BINDING PROTEIN HISP
>gi|7442522|pir||H65002 histidine transport protein hisP
- Escherichia coli >gi|1788644|gb|AAC75366.1| (AE000319)
ATP-binding component of histidine transport
[Escherichia coli K12] >gi|1799677|dbj|BAA16143.1|
(D90861) histidine transport protein hisP [Escherichia
coli] >gi|1799687|dbj|BAA16152.1| (D90862) histidine
transport protein hisP [Escherichia coli]
Length = 257
Score = 121 bits (301), Expect = 1e-26
Identities = 80/263 (30%), Positives = 145/263 (54%), Gaps = 19/263 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ L V +L Y G + + V+ G+V+ + G SG GKS+ + + +
Sbjct: 1 MSENKLNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK 56
Query: 61 PPGRIVSGSIKIDGREIVGLPE--------DVLRKEIRWQKISMIFQGAMNALNPVYTVG 112
P GSI ++G+ I + + D + + +++M+FQ N + + TV
Sbjct: 57 PS----EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH-FNLWSHM-TVL 110
Query: 113 YQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
++E I G+S+++A +RA+KYL VG+D +YP LSGG +QRV IA AL +E
Sbjct: 111 ENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 170
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
P++++ DEPT+ALD + +++ +M++L ++ G +M+ +TH++ +S + ++ GK
Sbjct: 171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Query: 233 IVEIGPSEKVYYEPAHPYTQKLL 255
I E G E+++ P P Q+ L
Sbjct: 230 IEEEGAPEQLFGNPQSPRLQRFL 252
>pir||A27835 histidine transport protein hisP - Escherichia coli
>gi|41705|emb|CAA68511.1| (Y00455) P protein (AA 1-257)
[Escherichia coli]
Length = 257
Score = 121 bits (300), Expect = 1e-26
Identities = 80/263 (30%), Positives = 145/263 (54%), Gaps = 19/263 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ L V +L Y G + + V+ G+V+ + G SG GKS+ + + +
Sbjct: 1 MSENKLNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK 56
Query: 61 PPGRIVSGSIKIDGREIVGLPE--------DVLRKEIRWQKISMIFQGAMNALNPVYTVG 112
P GSI ++G+ I + + D + + +++M+FQ N + + TV
Sbjct: 57 PS----EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH-FNLWSHM-TVL 110
Query: 113 YQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
++E I G+S+++A +RA+KYL VG+D +YP LSGG +QRV IA AL +E
Sbjct: 111 ENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 170
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
P++++ DEPT+ALD + +++ +M++L ++ G +M+ +TH++ +S + ++ GK
Sbjct: 171 PEVLLFDEPTSALDPELVGELLRIMQQLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGK 229
Query: 233 IVEIGPSEKVYYEPAHPYTQKLL 255
I E G E+++ P P Q+ L
Sbjct: 230 IEEEGAPEQLFGNPQSPRLQRFL 252
>gb|AAA26354.1| (M96263) phnK [Sinorhizobium meliloti]
Length = 258
Score = 120 bits (297), Expect = 3e-26
Identities = 85/265 (32%), Positives = 142/265 (53%), Gaps = 20/265 (7%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L+V ++ +Y + G +V+F+L GEVL + GESG GK+++ L P
Sbjct: 3 AVPLLKVSDVSKFYGSRIG----CRNVSFELYPGEVLAIVGESGSGKTTLLSCLSTRLMP 58
Query: 62 PGRIVSGSIKIDG--REIVGLPEDVLRKEIR--WQKISMIFQGAMNALNPVYTVGYQMIE 117
IV ++ DG R++ + E R +R W + Q + L + G + E
Sbjct: 59 TSGIVEYHMR-DGQYRDLARMSEAERRFLMRTDW---GFVHQNPADGLRMTVSAGANVGE 114
Query: 118 PLIY----HRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEP 173
L+ H G R A D +L V ++ + + P SGGM+QR+ IA L+ P
Sbjct: 115 RLMAVGDRHYGNIRAAAGD----WLRRVEIEEDRIDDQPRAFSGGMRQRLQIARNLVTSP 170
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
+V DEPT LDV VQA++++L++ L LGL+ + +THDL++ +S ++ +M G +
Sbjct: 171 RLVFMDEPTGGLDVSVQARLLDLVRGLVHDLGLAAVIVTHDLAVARLLSHRMMVMKDGAV 230
Query: 234 VEIGPSEKVYYEPAHPYTQKLLAAI 258
+E G +++V +P PYTQ L+++I
Sbjct: 231 IEQGLTDRVLDDPREPYTQLLVSSI 255
>gb|AAC27495.1| (AF077856) PotA [Actinobacillus actinomycetemcomitans]
Length = 372
Score = 118 bits (292), Expect = 1e-25
Identities = 74/256 (28%), Positives = 141/256 (54%), Gaps = 19/256 (7%)
Query: 3 KKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPP 62
K I+E++++ Y G + D + GE L + G SGCGK+++ L G+ +
Sbjct: 8 KPIIELRSITKSY----GSNTIIKDFNLTINNGEFLTILGPSGCGKTTVLRLLAGLEE-- 61
Query: 63 GRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIYH 122
+ SG+I +DG +I +P + + ++ +FQ AL P T+ ++ + +
Sbjct: 62 --LDSGNIILDGEDITNVPAEK-------RHVNTVFQSY--ALFPHMTI-FENVAFGLRM 109
Query: 123 RGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPT 182
+ + + R ++ L +V L+ E+ R P +LSGG +QR+ IA A++ +P +++ DE
Sbjct: 110 QKVPEAEIKPRVLEALRMVQLE-EMADRKPTQLSGGQQQRIAIARAVVNKPKVLLLDESL 168
Query: 183 TALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKV 242
+ALD ++ Q+ +K L+++LG++ IF+THD +SD+I ++ GKI + G ++
Sbjct: 169 SALDYKLRKQMQYELKVLQRQLGITFIFVTHDQEEAITMSDRIVLLRKGKIAQDGSPREI 228
Query: 243 YYEPAHPYTQKLLAAI 258
Y EPA+ + + + I
Sbjct: 229 YEEPANLFVARFIGEI 244
>pir||E83288 probable ATP-binding component of ABC transporter PA2857 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948945|gb|AAG06245.1|AE004712_5 (AE004712) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 227
Score = 116 bits (287), Expect = 4e-25
Identities = 77/237 (32%), Positives = 128/237 (53%), Gaps = 16/237 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+ IL +NL ++ G + + D++ DL +G+ L + G SG GKS++ L G+ Q
Sbjct: 1 MSASILNAQNLSKVVGSAEGKLTILHDLSLDLARGDSLAIVGSSGSGKSTLLGLLAGLDQ 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQG--AMNALNPVYTVGYQMIEP 118
P G G +++ G + L ED R +R + +FQ +++L+ + V + P
Sbjct: 61 PSG----GEVRLAGHALGDLDEDQ-RARVRAAHVGFVFQSFQLLDSLDALENV----MLP 111
Query: 119 LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
L R DA RA + LE VGL + + YP +LSGG +QRV IA A EPD++ A
Sbjct: 112 LELE---GRADARQRARELLERVGLGQRLGH-YPRQLSGGEQQRVAIARAFAAEPDVLFA 167
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
DEPT LD +I +L+ L ++ G +++ +THD LA ++ + +G++++
Sbjct: 168 DEPTGNLDSATGERISDLLFELNRERGTTLVLVTHD-ERLAHRCRRLIRLESGRLID 223
>pir||S76632 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001739|dbj|BAA10576.1| (D64004) ABC transporter
[Synechocystis sp.]
Length = 245
Score = 114 bits (283), Expect = 1e-24
Identities = 80/232 (34%), Positives = 132/232 (56%), Gaps = 10/232 (4%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A+ ++ ++NL +Y T + + D+ L++GEV+ L G SG GK+++ TLMG +
Sbjct: 18 AEPVVAMENLSHFYGTGNLRKQILFDINLRLDEGEVVILKGPSGSGKTTL-LTLMGGLRS 76
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
SGS+++ G+E+ G + L + R I IFQ A N L + T + +
Sbjct: 77 AQ---SGSLRVFGQELNGAKKQDLVQVRR--HIGYIFQ-AHNLLESL-TARQNVQMAIEL 129
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
H + + A + ++ LE VGL I Y PH LSGG KQRV IA AL+ P +++ADEP
Sbjct: 130 HPQYNAQQAKELSIAMLEAVGLGAHINYN-PHNLSGGQKQRVAIARALVSHPKMILADEP 188
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
T ALD ++ LM++L ++ G +++ +THD IL +++D+I + G++
Sbjct: 189 TAALDSKSGHDVVELMRKLAREQGSTILIVTHDNRIL-DVADRIIQLEDGQL 239
>pir||D83194 polyamine transport protein PotA PA3607 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949764|gb|AAG06995.1|AE004781_3 (AE004781)
polyamine transport protein PotA [Pseudomonas
aeruginosa]
Length = 363
Score = 113 bits (279), Expect = 4e-24
Identities = 78/269 (28%), Positives = 139/269 (50%), Gaps = 19/269 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +LE++N+ + G AVD+V+ + GE L G SGCGK+++ L G Q
Sbjct: 1 MTPPLLEIRNVTRRF----GDFTAVDNVSLTINTGEFFTLLGPSGCGKTTLLRMLAGFDQ 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P SG I+++G+++ G+ E + + +FQ AL P +V + PL
Sbjct: 57 PD----SGEIRLNGQDLAGV-------EPEKRPVHTVFQSY--ALFPHMSVAQNIAFPLK 103
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
G+++ + R + L+ V L + R P +LSGG +QRV IA AL+ P +++ DE
Sbjct: 104 M-AGVAKSEIDARVEQALKDVRLADK-GGRMPTQLSGGQRQRVAIARALVNRPRLLLLDE 161
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
P +ALD ++ ++ + L+K +G++ +++THD +S +IA+M G++ ++ E
Sbjct: 162 PLSALDAKLREEMQIELINLQKDVGITFVYVTHDQGEALALSHRIAVMNQGRVEQLDAPE 221
Query: 241 KVYYEPAHPYTQKLLAAIPRLHEDVEKLE 269
+Y P + + L VE ++
Sbjct: 222 TIYSFPRSRFVADFIGQCNLLDATVEAVD 250
>pir||T34822 ABC-transporter ATP binding protein - Streptomyces coelicolor
>gi|2815356|emb|CAA16479.1| (AL021530) ABC-transporter
ATP binding protein [Streptomyces coelicolor A3(2)]
Length = 230
Score = 112 bits (278), Expect = 5e-24
Identities = 73/235 (31%), Positives = 129/235 (54%), Gaps = 10/235 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+ + ++ V++++ Y V A+ V+FD+ +GE++ L G SG GK+++ + G+
Sbjct: 5 VTETMVRVEDVRKSYGRDSAAVHALRGVSFDVPRGELIALKGRSGSGKTTLLNIVGGLDT 64
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P +G +++DGR++ L ED L +R ++ +FQ L P+ T + P+
Sbjct: 65 PD----AGRVEVDGRDLAELDEDGLLA-LRRDRVGFVFQSF--GLIPILTAAENVGVPMR 117
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
R +RE +R L LVGL R P E+SGG +QRV IA AL P ++IADE
Sbjct: 118 LRRAAARERE-ERVELLLSLVGLADHAAQR-PGEMSGGQQQRVAIARALANNPALLIADE 175
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
PT LD ++ L++ + + ++ + THD ++L +++D++ + G+IVE
Sbjct: 176 PTGQLDAETGHSVMELLRAVVRSEQVTALVATHDATLL-DLADRVLELRDGEIVE 229
>pir||G69043 cobalt transport ATP-binding protein O - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621173|gb|AAB84639.1| (AE000802) cobalt transport
ATP-binding protein O [Methanobacterium
thermoautotrophicum]
Length = 280
Score = 111 bits (274), Expect = 1e-23
Identities = 84/279 (30%), Positives = 144/279 (51%), Gaps = 19/279 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +I+E +++ +T +A+ + F E+GEV+ L G +G GKS++ G+ Q
Sbjct: 1 MNMRIIEAVDIR---YTYPDGTEALRGINFHAERGEVVALLGPNGAGKSTLFLHFNGILQ 57
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P SG I IDG E+ +++ QK+ ++FQ + L PL
Sbjct: 58 P----TSGKIMIDGEELDYSKSGLIKAR---QKVGIVFQNPDDQLFAPRVDEDVAFGPL- 109
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVY--RYPHELSGGMKQRVVIATALILEPDIVIA 178
+ G+S ++ +R L+ VG+ + Y + PH SGG K+RV IA + ++PDI++
Sbjct: 110 -NMGLSEDEVEERVRDALQKVGM---LGYESKPPHHFSGGEKKRVAIAGIIAMKPDIMVL 165
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEPT+ LD +QI+ L+ L ++ G+++I THD+ + SD+I I+ G+I+ G
Sbjct: 166 DEPTSGLDPRGASQILRLLHNLNEE-GMTIIISTHDVDLAPLYSDRIYIISDGEIISTGA 224
Query: 239 SEKVYYEPAHPYTQKL-LAAIPRLHEDVEKLEFIPGSPP 276
+V+ + L L I L E ++K + +P P
Sbjct: 225 PSEVFSDIDTIRGANLRLPRIAHLVEILQKEDDLPFEEP 263
>sp|P45247|LOLD_HAEIN LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|1074192|pir||A64129 probable ABC-type transport
protein HI1549 - Haemophilus influenzae (strain Rd KW20)
>gi|1574394|gb|AAC23199.1| (U32830) ABC transporter,
ATP-binding protein [Haemophilus influenzae Rd]
Length = 227
Score = 110 bits (273), Expect = 2e-23
Identities = 71/235 (30%), Positives = 127/235 (53%), Gaps = 10/235 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +L+ +N+ +Y + + V+F +E E++ + G SG GKS++ TL G+ Q
Sbjct: 1 MNNYLLKCENINKFYQEGENQTQVLKGVSFSMEPAELVAIVGSSGSGKSTLLHTLGGLDQ 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P SG + I+G+ + + L +R + + ++Q + L +T ++ P++
Sbjct: 61 PS----SGEVFINGQSLQKASANELAA-LRNRYLGFVYQ--FHHLMADFTALENVMMPML 113
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
++ +A DRA K L VGL I +R P LSGG +QRV IA AL+ P +V+ADE
Sbjct: 114 IGH-QNKTEAKDRAEKMLSAVGLSHRITHR-PSALSGGERQRVAIARALVNNPSLVLADE 171
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
PT LD I L+++L ++ ++ + +THD+ + ++S ++ +M G + E
Sbjct: 172 PTGNLDHKTTESIFELIQQLNQEQNIAFLLVTHDMGLAEKLSRRL-VMQDGLLKE 225
>sp|P47426|Y180_MYCGE HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MG180
>gi|1361718|pir||I64219 membrane transport protein
(glnQ) homolog MG180 - Mycoplasma genitalium
>gi|3844776|gb|AAC71399.1| (U39697) ABC transporter,
ATP-binding protein [Mycoplasma genitalium]
Length = 304
Score = 110 bits (273), Expect = 2e-23
Identities = 81/273 (29%), Positives = 142/273 (51%), Gaps = 20/273 (7%)
Query: 2 AKKILEVKNLKMYYFT-SRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
A +IL V +L + + + P+K +DD ++ +K ++ + G+SG GKS++ G+ +
Sbjct: 13 ADEILAVSHLSCVFNSKTNNPIKVIDDFSYTFQKNQIYCIIGDSGSGKSTLVNHFNGLIK 72
Query: 61 P-PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
P G I I I ++ LRK I S++FQ P Y + +E
Sbjct: 73 PNQGDIWVKDIYIGAKQRKIKNFKKLRKTI-----SIVFQF------PEYQLFKDTVEKD 121
Query: 120 IYHR----GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
I G S+ DA +A YLE++GL + R P ELSGG K+RV IA L +EP+I
Sbjct: 122 IMFGPVALGQSKYDARQKAAYYLEMMGLKYPFLERNPFELSGGQKRRVAIAGILAIEPEI 181
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
+I DEPT LD + +++ L+K K++ ++ ITH + + E++D + ++ GK+V+
Sbjct: 182 LIFDEPTAGLDPEGEREMMQLIKTAKQQ-QRTVFMITHQMENVLEVADVVLVLAKGKLVK 240
Query: 236 IGPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKL 268
+V+ + + +K +P + + ++ L
Sbjct: 241 AASPYEVFMD--QTFLEKTTIVLPPVIQVIKDL 271
>sp|Q57293|AFUC_ACTPL FERRIC TRANSPORT ATP-BINDING PROTEIN AFUC
>gi|1469284|gb|AAB05030.1| (U05042) afuC gene product
[Actinobacillus pleuropneumoniae]
>gi|1477453|gb|AAB17216.1| (U04954) afuC [Actinobacillus
pleuropneumoniae]
Length = 348
Score = 110 bits (272), Expect = 2e-23
Identities = 72/235 (30%), Positives = 130/235 (54%), Gaps = 19/235 (8%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M L +KN+ + G +D++ +++G ++ L G SGCGK+++ + G+
Sbjct: 1 MNNDFLVLKNITKSF----GKATVIDNLDLVIKRGTMVTLLGPSGCGKTTVLRLVAGLEN 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P SG I IDG EDV + I+ + I ++FQ AL P ++G + L
Sbjct: 57 P----TSGQIFIDG-------EDVTKSSIQNRDICIVFQSY--ALFPHMSIGDNVGYGLR 103
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+G+S E+ R + LELV L R+ ++SGG +QRV +A AL+L+P ++I DE
Sbjct: 104 M-QGVSNEERKQRVKEALELVDL-AGFADRFVDQISGGQQQRVALARALVLKPKVLILDE 161
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
P + LD ++ + ++ L+++LG++ +++THD + +SD++ +M G I++
Sbjct: 162 PLSNLDANLRRSMREKIRELQQRLGITSLYVTHDQTEAFAVSDEVIVMNKGTIMQ 216
>gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Mycoplasma bovis]
Length = 156
Score = 110 bits (272), Expect = 2e-23
Identities = 52/129 (40%), Positives = 87/129 (67%), Gaps = 2/129 (1%)
Query: 191 AQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYYEPAHPY 250
A ++ L ++++++ +S+I I+H++S++A+ + I +MYAGKIVE G + ++ PAHPY
Sbjct: 1 ASVLALFEQIRQEYNISIILISHNISVVAKFCEYIYVMYAGKIVERGTRKDIFTNPAHPY 60
Query: 251 TQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEPKMVEVDK 310
T L++AIP D E+L I G+PP++ N P G F PR +A++ E+EP ++E++
Sbjct: 61 TWALISAIP--ENDDERLFSIQGTPPDMANLPIGDPFAPRNDFALEIDYEKEPPLIEINS 118
Query: 311 DHYAACWLL 319
H AA WLL
Sbjct: 119 HHKAATWLL 127
>sp|P45769|YHDZ_ECOLI HYPOTHETICAL AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN YHDZ
>gi|7442515|pir||A65120 ABC-type transport protein yhdZ
- Escherichia coli >gi|606212|gb|AAA58075.1| (U18997)
ORF_o252 [Escherichia coli] >gi|1789672|gb|AAC76303.1|
(AE000406) putative ATP-binding component of a transport
system [Escherichia coli K12]
Length = 252
Score = 108 bits (267), Expect = 1e-22
Identities = 75/257 (29%), Positives = 137/257 (53%), Gaps = 15/257 (5%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A ++ ++N+ +Y G + ++ ++ GE + L G SG GKS+ + + +
Sbjct: 9 ANAMITLENVNKWY----GQFHVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINHLEEH 64
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
G I +DG E L ED+ E Q++ M+FQ L P TV I+
Sbjct: 65 Q----QGRIVVDGIE---LNEDIRNIERVRQEVGMVFQHFN--LFPHLTVLQNCTLAPIW 115
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
R M +++A D A+ YLE V + E +++P ++SGG +QRV IA +L ++P I++ DEP
Sbjct: 116 VRKMPKKEAEDLAVHYLERVRI-AEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEP 174
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEK 241
T+ALD + ++++ M L + G++M+ +TH++ ++D++ M G+IVE ++
Sbjct: 175 TSALDPEMVKEVLDTMIGLAQS-GMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDE 233
Query: 242 VYYEPAHPYTQKLLAAI 258
+ P T+ L+ +
Sbjct: 234 FFAHPKSERTRAFLSQV 250
>pir||H72272 sugar ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4981834|gb|AAD36351.1|AE001783_2
(AE001783) sugar ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 369
Score = 106 bits (263), Expect = 3e-22
Identities = 77/259 (29%), Positives = 138/259 (52%), Gaps = 20/259 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MA+ +LE N+ Y V AV + +E E + L G SGCGK++ + G+ +
Sbjct: 3 MAQVVLE--NVTKVY---ENKVVAVKNANLVVEDKEFVVLLGPSGCGKTTTLRMIAGLEE 57
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
I G I IDG+ + DV K+ + I+M+FQ AL P TV Y+ + +
Sbjct: 58 ----ITDGKIYIDGKVV----NDVEPKD---RDIAMVFQNY--ALYPHMTV-YENMAFGL 103
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
R +++ R + +++G++ ++ R P +LSGG +QRV + A++ P + + DE
Sbjct: 104 KLRKYPKDEIDRRVREAAKILGIE-NLLDRKPRQLSGGQRQRVAVGRAIVRNPKVFLFDE 162
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
P + LD ++ Q+ + +K+L +L ++I++THD ++DKI +M G+I +IG
Sbjct: 163 PLSNLDAKLRVQMRSELKKLHHRLQATIIYVTHDQVEAMTMADKIVVMKDGEIQQIGTPH 222
Query: 241 KVYYEPAHPYTQKLLAAIP 259
++Y PA+ + + + P
Sbjct: 223 EIYNSPANVFVAGFIGSPP 241
>sp|P55453|Y4FO_RHISN PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN Y4FO
>gi|2182398|gb|AAB91671.1| (AE000073) Y4fO [Rhizobium
sp. NGR234]
Length = 339
Score = 106 bits (262), Expect = 4e-22
Identities = 74/250 (29%), Positives = 128/250 (50%), Gaps = 19/250 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MA +L + L + + + V D+ D+ G + L G SG GKSS+ T+ G+
Sbjct: 8 MADSVLSLNKLDVGF----PGMTVVRDLNLDVADGAFVSLLGPSGSGKSSVLRTIAGLLP 63
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
G G + ++G++I LP + + + ++FQ AL P + ++ I +
Sbjct: 64 ALG----GRVLLEGQDITALPPER-------RNVGIVFQNY--ALFPTMSA-FENIAFAL 109
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
S+ + R + E+ G+ ++ + P +SGG +QRV IA AL+ +++ DE
Sbjct: 110 RVAKKSKAEVERRVGEVAEMAGISDQLDKK-PANMSGGQQQRVAIARALVTGSRVLLFDE 168
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
P + LD V+A + +KRL+ +LG + IF+THD +SD I ++ GKI +IG
Sbjct: 169 PLSNLDAKVRAAMRKEIKRLQSELGFTAIFVTHDQEDALTMSDLIVVLNHGKIEQIGDGR 228
Query: 241 KVYYEPAHPY 250
+Y +PA P+
Sbjct: 229 TLYRKPATPF 238
>sp|P75957|YCFV_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YCFV
Length = 233
Score = 106 bits (261), Expect = 5e-22
Identities = 74/225 (32%), Positives = 117/225 (51%), Gaps = 9/225 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M K +L+ NL Y + +V+F + +GE++ + G SG GKS++ L G+
Sbjct: 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P SG + +G+ + L + E+R QK+ I+Q + L P +T + PL+
Sbjct: 61 P----TSGDVIFNGQPMSKL-SSAAKAELRNQKLGFIYQ--FHHLLPDFTALENVAMPLL 113
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+ E RA++ L+ VGLD +R P ELSGG +QRV IA AL+ P +V+ADE
Sbjct: 114 IGKKKPAE-INSRALEMLKAVGLDHRANHR-PSELSGGERQRVAIARALVNNPRLVLADE 171
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKI 225
PT LD I L+ L + G + + +THDL + +S ++
Sbjct: 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216
>dbj|BAA35937.1| (D90747) Heterocyst maturation protein (devA) homolog [Escherichia
coli]
Length = 263
Score = 106 bits (261), Expect = 5e-22
Identities = 74/225 (32%), Positives = 117/225 (51%), Gaps = 9/225 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M K +L+ NL Y + +V+F + +GE++ + G SG GKS++ L G+
Sbjct: 31 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDT 90
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P SG + +G+ + L + E+R QK+ I+Q + L P +T + PL+
Sbjct: 91 P----TSGDVIFNGQPMSKL-SSAAKAELRNQKLGFIYQ--FHHLLPDFTALENVAMPLL 143
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+ E RA++ L+ VGLD +R P ELSGG +QRV IA AL+ P +V+ADE
Sbjct: 144 IGKKKPAE-INSRALEMLKAVGLDHRANHR-PSELSGGERQRVAIARALVNNPRLVLADE 201
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKI 225
PT LD I L+ L + G + + +THDL + +S ++
Sbjct: 202 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 246
>pir||T36431 probable ABC-type transport system ATP-binding protein -
Streptomyces coelicolor >gi|5459222|emb|CAB48895.1|
(AL096837) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 264
Score = 106 bits (261), Expect = 5e-22
Identities = 76/233 (32%), Positives = 123/233 (52%), Gaps = 14/233 (6%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A + L + + Y ++ V A+D VT L +G + G SG GKS++ G+ +P
Sbjct: 18 ASEALRLVKVTRTYGSADNAVTALDGVTLSLGRGTFTAVMGPSGSGKSTLLQCAAGLDRP 77
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL-I 120
SG + +DG+E+ G E L K R ++ +FQ N L + TV + PL +
Sbjct: 78 D----SGIVCVDGKELTGGGEAELTK-FRRGRVGFVFQ-QYNLLETL-TVAQNTVLPLKL 130
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
R + R+ RA + L VGL + +R P +LSGG +QRV IA AL+ EP ++ ADE
Sbjct: 131 AGRRVDRK----RAREVLTSVGLGDRLGHR-PDQLSGGQRQRVAIARALVTEPRVIFADE 185
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
PT ALD Q++ L++ + G +++ +THD + A +D + + G++
Sbjct: 186 PTGALDTRSARQVLLLLQEAARVHGRTVVMVTHD-PVAASYADSVVFLADGRL 237
>sp|Q58418|PSTB_METJA PROBABLE PHOSPHATE TRANSPORT ATP-BINDING PROTEIN PSTB
>gi|2119775|pir||C64426 phosphate transport system
ATP-binding protein - Methanococcus jannaschii
>gi|1591672|gb|AAB99016.1| (U67544) phosphate specific
transport complex component (pstB) [Methanococcus
jannaschii]
Length = 252
Score = 105 bits (259), Expect = 8e-22
Identities = 76/263 (28%), Positives = 138/263 (51%), Gaps = 22/263 (8%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M K +E KNL ++Y G +A+ D+ + + ++ L G SGCGKS+ L +
Sbjct: 1 MTKVKMETKNLNLWY----GEKQALFDINLPIYENKITALIGPSGCGKSTFLRCLNRLND 56
Query: 61 P-PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIE-- 117
P + G + +DG+ I DV E+R +++ M+FQ NP Y +
Sbjct: 57 LIPNVRIEGEVLLDGKNIYDKDVDVY--ELR-KRVGMVFQKP----NPFAMSIYDNVAFG 109
Query: 118 PLIYHRGMSREDALDRAMKY-LELVGLDPEI---VYRYPHELSGGMKQRVVIATALILEP 173
P I+ G+ + LD+ +++ L+ L E+ +++ LSGG +QR+ IA A+ ++P
Sbjct: 110 PRIH--GIKDKKELDKIVEWALKKAALWDEVKDELHKNALSLSGGQQQRLCIARAIAVKP 167
Query: 174 DIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
++++ DEPT+ALD + +I LM L K +++ +TH++ + +SD A GK+
Sbjct: 168 EVLLMDEPTSALDPISTLKIEELMVELAK--DYTIVVVTHNMQQASRVSDYTAFFLMGKL 225
Query: 234 VEIGPSEKVYYEPAHPYTQKLLA 256
+E G +E+++ P T ++
Sbjct: 226 IEFGETEQIFLNPQKKETDDYIS 248
>gb|AAF22612.1|AF161268_1 (AF161268) ATP binding protein MalK [Thermoanaerobacter
ethanolicus]
Length = 371
Score = 103 bits (254), Expect = 3e-21
Identities = 75/257 (29%), Positives = 130/257 (50%), Gaps = 16/257 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MAK + E K + RG V AV+D F +E E + L G SGCGK++ + G+
Sbjct: 1 MAKIVFEHVT-KEFIDEKRGKVIAVNDANFTIEDKEFVVLVGPSGCGKTTTLRMIAGLE- 58
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
R G+I I + + LP + + I+M+FQ AL P TV Y+ + +
Sbjct: 59 ---RQTKGNIYIGEKLVNYLPP-------KDRDIAMVFQDY--ALYPHMTV-YENLSFGL 105
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+ + R + + + E++G+ E++ R P ELSGG +QRV + A++ P + + DE
Sbjct: 106 RNLKVPRTEIEQKVKRAAEILGIS-ELLDRKPRELSGGQRQRVAVGRAIVRNPKVFLFDE 164
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
P + LD ++ Q+ + L KKL +++++THD + +I +M G I +I +
Sbjct: 165 PLSNLDAKLRVQMRVELAELHKKLETTIVYVTHDQVEAMTLGQRIIVMNLGIIQQIATPD 224
Query: 241 KVYYEPAHPYTQKLLAA 257
++Y P + + + A
Sbjct: 225 ELYNRPVNMFVAGFIGA 241
>pir||D83356 probable ATP-binding component of ABC transporter PA2308 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948341|gb|AAG05696.1|AE004657_3 (AE004657) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 282
Score = 102 bits (252), Expect = 6e-21
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 16/227 (7%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L V + + Y T V+A V+F+++ + L G SGCGKS++ + G P
Sbjct: 13 ADALLAVDGVSLEYRTRSRVVRATQRVSFEVDPADRFVLLGPSGCGKSTLLKAVAGFITP 72
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
G I++ G+ + D + ++FQ + L P TV ++ PL
Sbjct: 73 S----EGEIRLQGQAVRAPGPDRI----------VVFQ-EFDQLPPWKTVRQNVLFPLRV 117
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
++R++A RA + LE VGL YPH LSGGMK RV IA AL ++P I++ DEP
Sbjct: 118 SGQVTRDEAERRADECLEKVGL-AGFAEAYPHTLSGGMKARVAIARALAMQPKILLMDEP 176
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIM 228
ALD + + ++ + RL +++ +++F+TH + + ++I ++
Sbjct: 177 FAALDALTRRKMQEELLRLWEEVRFTLLFVTHSIEEALVVGNRILLL 223
>sp|P45031|YRBF_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI1087
>gi|1075226|pir||B64182 hypothetical protein HI1087 -
Haemophilus influenzae (strain Rd KW20)
>gi|1574641|gb|AAC22743.1| (U32788) ABC transporter,
ATP-binding protein [Haemophilus influenzae Rd]
Length = 264
Score = 102 bits (251), Expect = 7e-21
Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 13/242 (5%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M + ++EVKNL RG D++ ++KG++ + G SG GK+++ + G
Sbjct: 1 MNQNLIEVKNLTF----KRGDRVIYDNLNLQVKKGKITAIMGPSGIGKTTLLKLIGGQLM 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P G I DG++I L L E+R +++ M+FQ AL + + P+
Sbjct: 57 PE----QGEILFDGQDICRLSNRELY-EVR-KRMGMLFQSG--ALFTDISTFDNVAFPIR 108
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
H + + LE VGL P ELSGGM +R +A A+ L+PD+++ DE
Sbjct: 109 EHTHLPENLIRQIVLMKLEAVGLRGAAALM-PSELSGGMARRAALARAIALDPDLIMFDE 167
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
P T D + I++L+KRL + L L+ I ++HD+ + I+D I+ K++ G SE
Sbjct: 168 PFTGQDPISMGVILSLIKRLNEALNLTSIVVSHDVEEVLSIADYAYIIADQKVIAEGTSE 227
Query: 241 KV 242
++
Sbjct: 228 QL 229
>emb|CAA36923.1| (X52694) proV protein (AA 1-224) (941 is 1st base in codon)
[Escherichia coli]
Length = 224
Score = 101 bits (250), Expect = 9e-21
Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 21/219 (9%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A K +E K G V D + +E+GE+ + G SG GKS++ L + +P
Sbjct: 21 AFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP 80
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTV------GYQM 115
G + IDG +I + + LR E+R +KI+M+FQ AL P TV G ++
Sbjct: 81 ----TRGQVLIDGVDIAKISDAELR-EVRRKKIAMVFQSF--ALMPHMTVLDNTAFGMEL 133
Query: 116 IEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
G++ E+ ++A+ L VGL+ + YP ELSGGM+QRV +A AL + PDI
Sbjct: 134 A-------GINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDI 185
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHD 214
++ DE +ALD +++ ++ + + +L+ K +++FI+HD
Sbjct: 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
>pir||C81179 spermidine/putrescine ABC transporter, ATP-binding protein NMB0610
[imported] - Neisseria meningitidis (group B strain
MD58) >gi|7225840|gb|AAF41037.1| (AE002416)
spermidine/putrescine ABC transporter, ATP-binding
protein [Neisseria meningitidis MC58]
Length = 419
Score = 101 bits (250), Expect = 9e-21
Identities = 79/255 (30%), Positives = 129/255 (49%), Gaps = 21/255 (8%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
AK L+++ L + G AVD++ D+ + E+ L G SG GKS++ L GM P
Sbjct: 54 AKPYLKIQGLVKKF----GDNYAVDNIDLDIYQHEIFALLGSSGSGKSTLLRMLAGMESP 109
Query: 62 PGRIVSGSIKIDGREIVGL-PEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
G I +DG++I L P D + I+M+FQ AL P TV + L
Sbjct: 110 N----QGKIILDGQDITKLAPYD--------RPINMMFQSY--ALFPHMTVEQNIAFGLK 155
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+ M + + R + L LV + + R PH+LSGG +QR+ +A +L P I++ DE
Sbjct: 156 QDK-MPKGEIAARVEEMLRLVQMT-KFAKRKPHQLSGGQQQRIALARSLAKRPKILLLDE 213
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
P ALD ++ Q + +++G++ I +THD ++ +IAIM G++ ++G
Sbjct: 214 PLGALDKKLRQQTQLELVNTLEQVGVTCIMVTHDQEEAMTMATRIAIMSDGQLQQVGTPS 273
Query: 241 KVYYEPAHPYTQKLL 255
VY P +T + +
Sbjct: 274 DVYDYPNSRFTAEFI 288
>emb|CAC05880.1| (AL391754) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor]
Length = 229
Score = 101 bits (250), Expect = 9e-21
Identities = 71/231 (30%), Positives = 119/231 (50%), Gaps = 14/231 (6%)
Query: 2 AKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQP 61
A +L L+ Y GP A+D F + GEV+ + G SG GKS++ L G+ P
Sbjct: 5 AGSLLSADQLRKAY----GPTLALDGAEFSIHPGEVVAVMGPSGSGKSTLLHCLAGIVPP 60
Query: 62 PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLIY 121
SG+I +GRE+ + D R +R +FQ L P T + PL
Sbjct: 61 D----SGTITYNGRELSAM-SDAQRSALRRSDFGFVFQ--FGQLVPELTCVENVALPLRL 113
Query: 122 HRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEP 181
+ G SR++A A+ ++E + +D ++ + P E+SGG QRV +A +L+ P ++ ADEP
Sbjct: 114 N-GTSRKEAERAALSWMERLEVD-DLRKKRPGEVSGGQGQRVAVARSLVTNPRVLFADEP 171
Query: 182 TTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
T ALD + +++ L+ + +++ +TH+ + A SD+ ++ GK
Sbjct: 172 TGALDSLNGERVMELLTDAARSTNAAVVLVTHEARV-AAYSDREIVVRDGK 221
>emb|CAB88472.1| (AL353816) phosphate ABC transport system ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 258
Score = 101 bits (249), Expect = 1e-20
Identities = 79/268 (29%), Positives = 136/268 (50%), Gaps = 26/268 (9%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MAK+I +V L YY G A++D++ +E V G SGCGKS+ TL M +
Sbjct: 1 MAKRI-DVSGLNAYY----GSFLAIEDISMTVEPRSVTAFIGPSGCGKSTFLRTLNRMHE 55
Query: 61 -PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVG-YQMIEP 118
PG V G + +D + G D + +++ M+FQ NP T+ Y +
Sbjct: 56 VTPGGRVDGKVMLDDENLYGAGIDPVAVR---REVGMVFQRP----NPFPTMSVYDNVAA 108
Query: 119 LIYHRGMSREDALDRAM-KYLELVGLDPEIVYRYPHE---LSGGMKQRVVIATALILEPD 174
+ G ++ LD + K L L E+ R LSGG +QR+ IA A+ +EP+
Sbjct: 109 GLRLNGKYKKSQLDDVVEKSLRGANLWNEVKDRLNKPGSGLSGGQQQRLCIARAIAVEPN 168
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDK------IAIM 228
+++ DEP +ALD + I +L+ LK++ +++ +TH++ A +SD+ A+
Sbjct: 169 VLLMDEPCSALDPISTLAIEDLIGELKER--FTIVIVTHNMQQAARVSDRTAFFNLAAVG 226
Query: 229 YAGKIVEIGPSEKVYYEPAHPYTQKLLA 256
GK++EI +E+++ P+ T+ ++
Sbjct: 227 QPGKLIEIDETERIFSNPSVQATEDYIS 254
>gb|AAG34709.1|AF320001_2 (AF320001) putative ATP binding protein of ABC transporter
[Acinetobacter sp. BD413]
Length = 228
Score = 101 bits (249), Expect = 1e-20
Identities = 69/235 (29%), Positives = 122/235 (51%), Gaps = 9/235 (3%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+K +LE K++ ++ + V+ + ++ + GE + + G SG GKS++ L G+ Q
Sbjct: 1 MSKIVLEAKDVYKHFTDGKSTVEVIKGLSLKIAAGEFVSIVGASGSGKSTLLHILGGLDQ 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P G + ++ + L E R R Q + ++Q + L P ++ + PL+
Sbjct: 61 P----TQGQVFLNEQRFDNLGE-AERGFKRNQYLGFVYQ--FHHLLPEFSALENVAMPLM 113
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+ ++ +A L+ VGL + ++ P ELSGG +QRV +A AL+ P +++ADE
Sbjct: 114 LRADTNYKEVKQQAEHLLDRVGLSHRLTHK-PGELSGGERQRVALARALVARPAVMLADE 172
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
PT LD I L+ LK++ ++M+ +THD LA+ +D I M G V+
Sbjct: 173 PTGNLDRKTAFGIFELLSDLKQEFNMAMLIVTHD-EQLAQSADSILHMQDGLWVD 226
>gb|AAK40988.1| ABC transporter, ATP binding protein. [Sulfolobus solfataricus]
Length = 246
Score = 101 bits (248), Expect = 2e-20
Identities = 74/233 (31%), Positives = 122/233 (51%), Gaps = 9/233 (3%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +++ +LK Y T A+ VT + KGE L +AG SG GK+++ L+G+
Sbjct: 15 MTDILIDAMDLKKVYKTKNIEYVALRGVTLKVNKGEFLVIAGPSGSGKTTL-LDLLGLLD 73
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P +G I IDG ++ ED R R + I +FQ + N + Y + +E +
Sbjct: 74 SPS---AGKIIIDGIDVTNFDEDE-RAIFRRRYIGFVFQ-SYNLIT--YLTVLENVELAL 126
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
G+ ++A + L ++ E+ + P+ELSGG +QRV IA AL +P I++ADE
Sbjct: 127 AAIGIPVWKRREKAEEILSMIPGMLELKNKKPNELSGGQQQRVAIARALANDPKILLADE 186
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
PT LD I+ LMK+L ++ +++I THD ++ +D+I + G +
Sbjct: 187 PTANLDSKTGEAIVELMKKLNEEKKVTIIMATHDPDMM-RYADRIVYIRDGLV 238
>emb|CAB57615.1| (Y18930) ABC transporter/ATP-binding protein [Sulfolobus
solfataricus]
Length = 246
Score = 101 bits (248), Expect = 2e-20
Identities = 74/233 (31%), Positives = 122/233 (51%), Gaps = 9/233 (3%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +++ +LK Y T A+ VT + KGE L +AG SG GK+++ L+G+
Sbjct: 15 MTDILIDAMDLKKVYKTKNIEYVALRGVTLKVNKGEFLVIAGPSGSGKTTL-LDLLGLLD 73
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P +G I IDG ++ ED R R + I +FQ + N + Y + +E +
Sbjct: 74 SPS---AGKIIIDGIDVTNFDEDE-RAIFRRRYIGFVFQ-SYNLIT--YLTVLENVELAL 126
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
G+ ++A + L ++ E+ + P+ELSGG +QRV IA AL +P I++ADE
Sbjct: 127 AAIGIPVWKRREKAEEILSMIPGMLELKNKKPNELSGGQQQRVAIARALANDPKILLADE 186
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
PT LD I+ LMK+L ++ +++I THD ++ +D+I + G +
Sbjct: 187 PTANLDSKTGEAIVELMKKLNEEKKVTIIMATHDPDMM-RYADRIVYIRDGLV 238
>pir||T47012 hypothetical protein [imported] - Yersinia pestis
>gi|4106600|emb|CAA21355.1| (AL031866) ORF32, len:, 236
aa, hypothetical ABC transporter, similar to many, eg:
E. coli YBBA_ECOLI (228 aa), 44.0% identity in 225 aa
overlap, Fasta scores: opt: 611, E(): 0 [Yersinia
pestis]
Length = 237
Score = 99.8 bits (245), Expect = 4e-20
Identities = 70/235 (29%), Positives = 127/235 (53%), Gaps = 18/235 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+A ++E ++L + G V A++D+ + +GE + + G SG GK+ TLM +
Sbjct: 13 LADAVIETRHLYKRF----GQVTALEDINIRINRGEFVAIMGASGSGKT----TLMNILT 64
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
+ G + +DG + GL E+ R++ R KI ++FQ L P T ++
Sbjct: 65 CLDTVSEGQVLLDGIDAAGLDEEG-RRQFRADKIGLVFQ--QFHLIPYLTALENIMLAQH 121
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
YH + E A + LE VG+ P + + P +LSGG +QRV IA AL+ +P I+ ADE
Sbjct: 122 YHSVVDEE----AARQVLEQVGMTPRMGH-LPSQLSGGEQQRVCIARALVNQPPIIFADE 176
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
PT LD + +++ L+ + ++ G +++ +TH+ L+ ++D++ + GK ++
Sbjct: 177 PTGNLDEENEQRVLELLNHIHRQ-GRTIVMVTHNPD-LSCVADRVIRLQHGKYLD 229
>pir||D81263 probable ABC transport system ATP-binding protein Cj1663 [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6969079|emb|CAB73650.1| (AL139079) putative ABC
transport system ATP-binding protein [Campylobacter
jejuni]
Length = 217
Score = 99.8 bits (245), Expect = 4e-20
Identities = 76/236 (32%), Positives = 125/236 (52%), Gaps = 28/236 (11%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M K+++++ NL + G VKA++++ + +GE L + G SG GKS++ L M
Sbjct: 2 MKKELIKINNLNKEF----GKVKALNNINLSVYEGEWLAIMGPSGSGKSTLLNILSLMDT 57
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGA-----MNALNPVYTVGYQM 115
P SG +D + + E+ + +R +KI ++FQ +NAL V Y
Sbjct: 58 PS----SGEYILDNENLEQMDEEQ-KITLRREKIGLVFQQFHLIPYLNALENVMLSQY-- 110
Query: 116 IEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
YH + EDA LE VGL + + P +LSGG +QRV IA ALI P++
Sbjct: 111 -----YHSSVDEEDA----KMVLEKVGLSHRLTH-LPSQLSGGEQQRVCIARALINNPEL 160
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAG 231
++ADEPT LD + ++ +++LK + G +++ ITH+ LA+ +D+ I+ G
Sbjct: 161 LLADEPTGNLDEANEQIVLQTLQKLKNE-GKTIVLITHNPD-LAKFADRTLILQHG 214
>sp|P57031|LOLD_NEIMB LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|11277321|pir||C81107 ABC transporter, ATP-binding
protein NMB1234 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7226473|gb|AAF41615.1|
(AE002471) ABC transporter, ATP-binding protein
[Neisseria meningitidis MC58]
Length = 231
Score = 98.7 bits (242), Expect = 8e-20
Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 10/233 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ IL+ + + Y V+ + + ++ GE G+ G SG GKS++ L G+
Sbjct: 1 MSELILKCEGVGKRYRDGGLDVRVLHGLDLEIHAGESTGIIGSSGSGKSTLLHILGGLDM 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P G + + G ++ L + L ++R + + ++Q + L P ++ ++ PL+
Sbjct: 61 PS----EGRVLLMGEDLRTLNQRRLG-DLRNRHLGFVYQ--FHHLLPEFSALENVMMPLL 113
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+ SRE+A + AM LE VGL +R ELSGG +QR IA AL+ +P ++ADE
Sbjct: 114 IGK-KSREEAAEAAMAMLEKVGLKHRSTHR-AGELSGGERQRAAIARALVTQPKCLLADE 171
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
PT LD ++++M LK +LG ++ +THD LA +++ +M G +
Sbjct: 172 PTGNLDRANARNVLDMMLELKTELGTGLVVVTHD-DELAGRFERVMVMKDGSL 223
>pir||H82417 ABC transporter, ATP-binding protein VCA0782 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658206|gb|AAF96680.1| (AE004406) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 225
Score = 97.9 bits (240), Expect = 1e-19
Identities = 67/235 (28%), Positives = 120/235 (50%), Gaps = 12/235 (5%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M I+ ++L T++ + + V ++ GE + + G SG GKS++ L G+
Sbjct: 1 MQTSIISAQSLSKLVSTNQEHLTILKQVNLSIQAGESVAIVGASGAGKSTLMTLLAGLDT 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P G + + G+ + L +D R +R + + +FQ + L P + + P +
Sbjct: 61 PS----EGEVYLLGKPLSQL-DDEARAALRSESVGFVFQSFL--LIPSLSALENVTLPCL 113
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+ +RA K L+ VGL+ + + P +LSGG +QRV IA A ++ P ++ ADE
Sbjct: 114 LK---GEAEDRERAQKLLKAVGLEHRM-HHSPAQLSGGEQQRVAIARAFMISPQVLFADE 169
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
PT LD A++I+L+ L ++ G +++ +THD LA+ + M AG++ E
Sbjct: 170 PTGNLDQETAAKVIDLLFELNREHGTTLVLVTHDPK-LAQRCQRRFFMQAGELEE 223
>sp|P46342|YQGK_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YQGK
>gi|7442552|pir||E69956 phosphate ABC transporter
(ATP-binding pro) homolog yqgK - Bacillus subtilis
>gi|903307|dbj|BAA09585.1| (D58414) ORF75 [Bacillus
subtilis] >gi|1303858|dbj|BAA12514.1| (D84432) YqgK
[Bacillus subtilis] >gi|2634928|emb|CAB14425.1| (Z99116)
alternate gene name: yzmF~similar to phosphate ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 260
Score = 97.5 bits (239), Expect = 2e-19
Identities = 70/250 (28%), Positives = 132/250 (52%), Gaps = 16/250 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M +++ +V + ++Y G A+ ++ + + EV + G SGCGKS+ TL M Q
Sbjct: 9 MKQEVYQVNGMNLWY----GQHHALKNINLSIYENEVTAIIGPSGCGKSTFIKTLNLMIQ 64
Query: 61 -PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVY-TVGYQMIEP 118
P ++G + +G I+ D++ ++R + I M+FQ ++ V Y P
Sbjct: 65 MTPNVKLAGELNYNGSNILKDKVDIV--DLR-KNIGMVFQKGNPFPQSIFDNVAYG---P 118
Query: 119 LIYHRGMSR--EDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
++ + ++ +++++K + L + ++ LSGG +QR+ IA AL PDI+
Sbjct: 119 RVHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTSALSLSGGQQQRLCIARALATNPDIL 178
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
+ DEPT+ALD + +I L+ LK K +++ +TH++ A +SD+ A Y G++VE
Sbjct: 179 LMDEPTSALDPISTRKIEELILELKDK--YTIVIVTHNMQQAARVSDQTAFFYMGELVEC 236
Query: 237 GPSEKVYYEP 246
+ K++ P
Sbjct: 237 DNTNKMFSNP 246
>sp|P57030|LOLD_NEIMA LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|11346330|pir||C81909 probable ABC-transporter
ATP-binding protein NMA1402 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380061|emb|CAB84642.1| (AL162755) putative
ABC-transporter ATP-binding protein [Neisseria
meningitidis Z2491]
Length = 231
Score = 97.1 bits (238), Expect = 2e-19
Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 10/233 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ IL+ + + Y V + + ++ GE G+ G SG GKS++ L G+
Sbjct: 1 MSELILKCEGVGKRYRDGGLDVLVLHGLDLEIRAGESTGIIGSSGSGKSTLLHILGGLDM 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P G + + G ++ L + L ++R + + ++Q + L P ++ ++ PL+
Sbjct: 61 PS----EGRVLLMGEDLRTLNQRRLG-DLRNRHLGFVYQ--FHHLLPEFSALENVMMPLL 113
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
+ SRE+A + AM LE VGL +R ELSGG +QR IA AL+ +P ++ADE
Sbjct: 114 IGK-KSREEAAEAAMAMLEKVGLKHRSTHR-AGELSGGERQRAAIARALVTQPKCLLADE 171
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
PT LD ++++M LK +LG ++ +THD LA +++ +M G +
Sbjct: 172 PTGNLDRANARNVLDMMLELKTELGTGLVVVTHD-DELAGRFERVMVMKDGSL 223
>pir||G70022 iron(III) dicitrate transport permease homolog yusV - Bacillus
subtilis >gi|2635790|emb|CAB15283.1| (Z99120) similar to
iron(III) dicitrate transport permease [Bacillus
subtilis]
Length = 275
Score = 95.2 bits (233), Expect = 9e-19
Identities = 67/246 (27%), Positives = 121/246 (48%), Gaps = 21/246 (8%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M + + L + Y G +D++ + KGE+ G +GCGKS++ +L + +
Sbjct: 1 MGMSAISTETLSLGY----GDAVIIDELNLTIPKGEITVFIGSNGCGKSTLLRSLARLMK 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMN----ALNPVYTVGYQMI 116
P G GS+ ++GR I LP + KE+ +++ QG ++ + G
Sbjct: 57 PRG----GSVLLEGRAIAKLPTKEVAKEL-----AILPQGPSAPEGLTVHQLVKQGRYPY 107
Query: 117 EPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
+ + E+A++RA+K +L ++ R LSGG +QR IA L E DI+
Sbjct: 108 QNWLKQWSKEDEEAVERALKATKL----EDMADRAVDSLSGGQRQRAWIAMTLAQETDII 163
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
+ DEPTT LD+ Q +I++L+ L +K +++ + HDL++ + + + +I
Sbjct: 164 LLDEPTTYLDMTHQIEILDLLFELNEKEDRTIVMVLHDLNLACRYAHHLVAIKDKRIYAE 223
Query: 237 GPSEKV 242
G E+V
Sbjct: 224 GRPEEV 229
>gb|AAA62990.1| (U15182) phosphate transport protein pstB [Mycobacterium leprae]
Length = 258
Score = 93.6 bits (229), Expect = 3e-18
Identities = 76/266 (28%), Positives = 134/266 (49%), Gaps = 22/266 (8%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MAK+ L++K + +YY G +AV DV+ + V G SGCGK+++ TL M +
Sbjct: 1 MAKR-LDLKGVNIYY----GSFQAVLDVSLAVLPRSVTAFIGASGCGKTTVLRTLNRMHE 55
Query: 61 P-PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
PG V G++ +D +I D + + I M+FQ P ++ ++ L
Sbjct: 56 VVPGARVEGTVLLDDEDIYAPGIDPVGVR---RAIGMVFQRPNPF--PAMSIRDNVVAGL 110
Query: 120 IYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHE---LSGGMKQRVVIATALILEPDIV 176
+R+ D A +L L E+ R LSGG +QR+ IA A+ ++PD++
Sbjct: 111 KLQGVRNRKVLDDTAEYFLRGTNLWDEVKDRLDKPGGGLSGGQQQRLCIARAIAVQPDVL 170
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKI------AIMYA 230
+ DEP ++LD + I L+ LK++ +++ +TH++ A +SD+ A+
Sbjct: 171 LMDEPCSSLDPISTMAIEELIGELKQE--YTIVIVTHNMQQAARVSDQTAFFNLEAVGRP 228
Query: 231 GKIVEIGPSEKVYYEPAHPYTQKLLA 256
G++VEI +EK++ P T+ ++
Sbjct: 229 GRLVEIDDTEKIFSNPTEKATEDYIS 254
>emb|CAB95741.1| (AJ276960) putative ABC transporter [Staphylococcus xylosus]
Length = 257
Score = 93.6 bits (229), Expect = 3e-18
Identities = 63/229 (27%), Positives = 123/229 (53%), Gaps = 16/229 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+ + E+KN+ YYF ++ + ++++ + +GE + + G +G GKS++ ++G+
Sbjct: 1 MSTPVFELKNID-YYFDNK---QVLENINIKINRGEFVAIVGPNGAGKSTLLKIILGLLP 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
I G I +DG++ G + +L+ QK G ++ V G + L
Sbjct: 57 ----IQKGRIYVDGKDYNG-NQSLLKISYVSQKAQAFKAGFPASVKEVVISGLTKRKKLF 111
Query: 121 YHRGMSREDALDRAMKYLELVGL-DPEIVYRYPHELSGGMKQRVVIATALILEPDIVIAD 179
+ E+++ + L + L D I ELSGG +QRV+IA ALI EP ++I D
Sbjct: 112 QWFNRNDEESVKTVLSRLNIEHLIDKNIA-----ELSGGQQQRVLIARALISEPSVLILD 166
Query: 180 EPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIM 228
EPT+ +D ++ ++ LK++ G+++I +THD+ ++A+ + ++A +
Sbjct: 167 EPTSGIDAKHVSEFYETLETLKQE-GVTIILVTHDIGVVADTATEVACL 214
>dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacillus halodurans]
Length = 247
Score = 93.6 bits (229), Expect = 3e-18
Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 16/250 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M + IL V+ LK Y +K ++ + +GE++ + G SG GKS+ ++ + +
Sbjct: 1 MGEMILRVEGLKKVYPDGTVGIK---EINTSIRRGELISVIGPSGAGKSTFLRSINRLVE 57
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQG-----AMNALNPVYTVGYQM 115
P SG+I ++G I LR+ R KI M+FQ + L V
Sbjct: 58 P----TSGAIFVEGENICNARGKKLRQMRR--KIGMVFQHYNLIKRSSVLQNVLHGRLGY 111
Query: 116 IEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDI 175
+ + G E RA+ L+ VGL+ + + R ELSGG +QRV IA A+ P +
Sbjct: 112 MSTIKGGLGRFHESDTKRALSILKRVGLEEQALKR-ADELSGGQQQRVGIARAIAQNPTL 170
Query: 176 VIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
++ADEP +LD +++ MK + ++ G++ + H + + +D++ + AGKIV
Sbjct: 171 ILADEPIASLDPTASENVLHYMKTICQEEGITTVVNLHQVEFAKKFADRMIGIKAGKIVF 230
Query: 236 IG-PSEKVYY 244
G P E Y
Sbjct: 231 DGTPRELTDY 240
>gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . carboxy-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 103
Score = 93.2 bits (228), Expect = 4e-18
Identities = 46/96 (47%), Positives = 59/96 (60%), Gaps = 1/96 (1%)
Query: 224 KIAIMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPRLHEDVE-KLEFIPGSPPNLLNPP 282
+I +MY GK+VEIG E+V EP HPYTQ LL A+P D+ K I G + L P
Sbjct: 7 RIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQSPLELP 66
Query: 283 SGCRFHPRCPYAMDRCKEEEPKMVEVDKDHYAACWL 318
GC F+ RCP+A D CKE+ P++ + DHY AC L
Sbjct: 67 KGCVFYSRCPFAKDICKEKPPEIKRIKGDHYVACHL 102
>sp|Q57554|Y089_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ0089
>gi|2127897|pir||A64311 ferric enterobactin transport
ATP-binding protein homolog - Methanococcus jannaschii
>gi|1498853|gb|AAB98070.1| (U67466) ferric enterobactin
transport ATP-binding protein [Methanococcus jannaschii]
Length = 254
Score = 93.2 bits (228), Expect = 4e-18
Identities = 69/242 (28%), Positives = 124/242 (50%), Gaps = 16/242 (6%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+ IL V ++ Y + + ++++ F++++GEV+ + G +G GKS++ + + +
Sbjct: 1 MSLMILSVDGVEFAYKSRQ----ILNNIKFEVKRGEVVSILGVNGAGKSTLLKCINKILK 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P G+I ID +I L L K K+ + Q A V+ +P I
Sbjct: 57 PK----RGTILIDNFDIKNLDNLELAK-----KVGYVPQRAEGNYMTVFDAVLLGRKPHI 107
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
R+ ++ K L+L+ L+ + RY +ELSGG Q+V+IA AL+ EP I++ DE
Sbjct: 108 KWEVSDRD--IEITHKVLKLLNLE-DYALRYTNELSGGELQKVIIARALVQEPQILLLDE 164
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PT LD+ Q +++ ++ + K ++ I + HDL++ SDK ++ G I G E
Sbjct: 165 PTNNLDLKNQLEVMKIIMDISKSQNIASIVVMHDLNLALRYSDKFIMLKDGVIYAEGGRE 224
Query: 241 KV 242
+
Sbjct: 225 VI 226
>pir||F72485 probable high-affinity branched-chain amino acid transport
ATP-binding protein APE2526 - Aeropyrum pernix (strain
K1) >gi|5106231|dbj|BAA81542.1| (AP000064) 240aa long
hypothetical high-affinity branched-chain amino acid
transport ATP-binding protein [Aeropyrum pernix]
Length = 240
Score = 92.8 bits (227), Expect = 5e-18
Identities = 72/248 (29%), Positives = 133/248 (53%), Gaps = 20/248 (8%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MA+ +LEVK++ +YY G +A+ V+ + KGE++ L G +G GK++ T+ G+ +
Sbjct: 2 MAEPLLEVKSIDVYY----GEFQALFGVSLRVYKGEIVALLGGNGAGKTTTLLTISGLLK 57
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P +GSI GR+I GLP R E + IS + +G + P TV Y+ +
Sbjct: 58 PR----NGSIIWQGRDITGLPA-FKRVE---EGISHVPEG--RGIFPRLTV-YENLRVAA 106
Query: 121 YHRGMSR--EDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
R +D+L++ ++ + LSGG +Q + IA ALI P +++
Sbjct: 107 STRRAKEHFQDSLEQVYTIFPILKARRS---QLAGTLSGGEQQMLAIARALIQRPILLMM 163
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEP+ L + +I L RL+++LG++++ + ++ + +++D+ +M G+IV G
Sbjct: 164 DEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMETGRIVLEGA 223
Query: 239 SEKVYYEP 246
S+++ +P
Sbjct: 224 SDELALDP 231
>gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 138
Score = 92.8 bits (227), Expect = 5e-18
Identities = 52/135 (38%), Positives = 77/135 (56%), Gaps = 2/135 (1%)
Query: 185 LDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSEKVYY 244
+D ++ I+NL +L+ +LG+S+I+ITHDL+ +SD+IAIM+ G IVE+G E+V
Sbjct: 2 VDASLRMSIVNLFAQLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGDIVEMGSVERVLT 61
Query: 245 EPAHPYTQKLLAAIPRLHEDVE-KLEFIPGSPPNLLNPPSGCRFHPRCPYAMDRCKEEEP 303
+P HPYT+ L +IP + + K E GC+F RCP M C+EE+P
Sbjct: 62 DPKHPYTRLLRESIPEPDPEKKWKEEITIADTEYEEYLRKGCKFAGRCPEVMSICREEKP 121
Query: 304 KMVEVDKDHYAACWL 318
+ V D C L
Sbjct: 122 PEIMVG-DSMVRCHL 135
>gb|AAC67220.1| (U78968) ATPase protein DppD [Streptococcus pyogenes]
Length = 267
Score = 92.8 bits (227), Expect = 5e-18
Identities = 73/248 (29%), Positives = 129/248 (51%), Gaps = 27/248 (10%)
Query: 1 MAKKILEVKNLKMYYFTSRG---------PVKAVDDVTFDLEKGEVLGLAGESGCGKSSI 51
M + +L +K+L + FT G P++A++ +++KGE+L + G SG GKS +
Sbjct: 1 MTETLLSIKDLSIT-FTQYGRFLKPFQSTPIQALN---LEVKKGELLAIIGASGSGKSLL 56
Query: 52 GFTLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTV 111
+M + P V+G + G+ + K++R +++++I Q ++N L+P V
Sbjct: 57 AHAIMDI-LPKNAAVTGDMIYRGQSLTSKRI----KQLRGKEMTLIPQ-SVNYLDPSMKV 110
Query: 112 GYQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALIL 171
+Q+ G+S E+A + GL YP +LSGGM +RV+ T +
Sbjct: 111 KHQV------RLGIS-ENAKATQEGLFQQFGLKESDGDLYPFQLSGGMLRRVLFTTCVSD 163
Query: 172 EPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAG 231
++IADEPT L +++ ++ K G+S+IFITHD+ ++I+D+I I G
Sbjct: 164 TVSLIIADEPTPGLHPDALQMVLDQLRSFADK-GISVIFITHDIVAASQIADRITIFKEG 222
Query: 232 KIVEIGPS 239
K +E P+
Sbjct: 223 KAIETAPA 230
>pir||D70810 probable phosphate transport system ATP-binding protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|2916878|emb|CAA17626.1| (AL022004) phoT
[Mycobacterium tuberculosis]
Length = 258
Score = 92.4 bits (226), Expect = 6e-18
Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 22/266 (8%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MAK+ L++ ++ +YY G AV DV+ + V G SGCGK+++ TL M +
Sbjct: 1 MAKR-LDLTDVNIYY----GSFHAVADVSLAILPRSVTAFIGPSGCGKTTVLRTLNRMHE 55
Query: 61 P-PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
PG V G++ +D ++I D + + I M+FQ P ++ ++ L
Sbjct: 56 VIPGARVEGAVLLDDQDIYAPGIDPVGVR---RAIGMVFQRPNPF--PAMSIRNNVVAGL 110
Query: 120 IYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHE---LSGGMKQRVVIATALILEPDIV 176
+R+ D A L L E+ R LSGG +QR+ IA A+ ++PD++
Sbjct: 111 KLQGVRNRKVLDDTAESSLRGANLWDEVKDRLDKPGGGLSGGQQQRLCIARAIAVQPDVL 170
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKI------AIMYA 230
+ DEP ++LD + I +L+ LK++ +++ +TH++ A +SD+ A+
Sbjct: 171 LMDEPCSSLDPISTMAIEDLISELKQQ--YTIVIVTHNMQQAARVSDQTAFFNLEAVGKP 228
Query: 231 GKIVEIGPSEKVYYEPAHPYTQKLLA 256
G++VEI +EK++ P T+ ++
Sbjct: 229 GRLVEIASTEKIFSNPNQKATEDYIS 254
>sp|P45393|YRBF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN IN MURA-RPON
INTERGENIC REGION >gi|7445932|pir||E65110 hypothetical
protein b3195 - Escherichia coli (strain K-12)
>gi|606133|gb|AAA57996.1| (U18997) ORF_f269 [Escherichia
coli] >gi|1789586|gb|AAC76227.1| (AE000399) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 269
Score = 90.5 bits (221), Expect = 2e-17
Identities = 71/248 (28%), Positives = 120/248 (47%), Gaps = 14/248 (5%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M + + + +++ FT RG D+++ + +G++ + G SG GK+++ + G
Sbjct: 1 MEQSVANLVDMRDVSFT-RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 59
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQ-GAM-NALNPVYTVGYQMIEP 118
P G I DG I + L +R +++SM+FQ GA+ +N V Y P
Sbjct: 60 PD----HGEILFDGENIPAMSRSRLYT-VR-KRMSMLFQSGALFTDMNVFDNVAY----P 109
Query: 119 LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
L H + M LE VGL P ELSGGM +R +A A+ LEPD+++
Sbjct: 110 LREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-PSELSGGMARRAALARAIALEPDLIMF 168
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGP 238
DEP D + ++ L+ L LG++ + ++HD+ + I+D I+ KIV G
Sbjct: 169 DEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGS 228
Query: 239 SEKVYYEP 246
++ + P
Sbjct: 229 AQALQANP 236
>pir||D75308 sugar ABC transportor, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459951|gb|AAF11701.1|AE002049_6 (AE002049) sugar
ABC transportor, ATP-binding protein [Deinococcus
radiodurans]
Length = 455
Score = 90.5 bits (221), Expect = 2e-17
Identities = 73/275 (26%), Positives = 136/275 (48%), Gaps = 22/275 (8%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MA+ ILE ++ YY + VK D ++ E + G SGCGKS+ + G+
Sbjct: 36 MAEVILE--HVNKYYGNKQHAVK---DFNLEIADREFMVFVGPSGCGKSTTLRMIAGLED 90
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
I G ++I R + +P + + I+M+FQ AL P V Y+ + +
Sbjct: 91 ----ISDGVLRIGDRVVNDVPP-------KDRDIAMVFQNY--ALYPHMNV-YENMAFGL 136
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
R RE+ R ++ ++ ++ R P ELSGG +QRV + A++ EP + + DE
Sbjct: 137 KLRKTPREEIDKRVRDAARILQIE-HLLGRKPKELSGGQRQRVAMGRAIVREPSVFLMDE 195
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
P + LD ++ ++ + + +L ++LG ++I++THD + ++I +M G I+++
Sbjct: 196 PLSNLDAKLRVEMRSQISQLHRRLGATIIYVTHDQVEAMTLGNRIVVMRDGVIMQVDTPM 255
Query: 241 KVYYEPAHPYTQKLLA--AIPRLHEDVEKLEFIPG 273
+Y P + + + ++ L V+ EF+ G
Sbjct: 256 NLYDFPQNRFVAGFIGSPSMNFLTARVQNGEFVIG 290
>sp|P21629|BRAF_PSEAE HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING
PROTEIN BRAF >gi|77619|pir||D36125 branched-chain amino
acid transport protein braF - Pseudomonas aeruginosa
(strain PAO) >gi|11347526|pir||E83509 branched-chain
amino acid transport protein BraF PA1071 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|216866|dbj|BAA14257.1| (D90223) BraF (peripheral
membrane protein, ATP-binding protein) [Pseudomonas
aeruginosa] >gi|9946987|gb|AAG04460.1|AE004539_2
(AE004539) branched-chain amino acid transport protein
BraF [Pseudomonas aeruginosa]
Length = 255
Score = 89.3 bits (218), Expect = 5e-17
Identities = 73/258 (28%), Positives = 129/258 (49%), Gaps = 25/258 (9%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ ILEV L M + G + AV+ V +E+ +V+ + G +G GK+++ L G Q
Sbjct: 1 MSRPILEVSGLTMRF----GGLLAVNGVNLKVEEKQVVSMIGPNGAGKTTVFNCLTGFYQ 56
Query: 61 PPGRIVSGSIKIDGREIVGLP------EDVLR--KEIRWQKISMIFQGAMNA----LNPV 108
P G G I++DG EI GLP + V+R + +R K + + A LN
Sbjct: 57 PTG----GLIRLDGEEIQGLPGHKIARKGVVRTFQNVRLFKEMTAVENLLVAQHRHLNTN 112
Query: 109 YTVGYQMIEPLIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATA 168
+ G + + + R S +A++ A +LE V L E R L+ G ++R+ IA
Sbjct: 113 FLAG--LFKTPAFRR--SEREAMEYAAHWLEEVNLT-EFANRSAGTLAYGQQRRLEIARC 167
Query: 169 LILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIM 228
++ P I++ DEP L+ + L+ +L+ + ++++ I HD+ ++ ISD I ++
Sbjct: 168 MMTRPRILMLDEPAAGLNPKETDDLKALIAKLRSEHNVTVLLIEHDMKLVMSISDHIVVI 227
Query: 229 YAGKIVEIGPSEKVYYEP 246
G + G E++ P
Sbjct: 228 NQGAPLADGTPEQIRDNP 245
>dbj|BAB03992.1| (AP001507) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 253
Score = 89.3 bits (218), Expect = 5e-17
Identities = 68/248 (27%), Positives = 130/248 (52%), Gaps = 14/248 (5%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+ IL V+ L Y KA+ + F L++ E + + G SG GK++ + + +
Sbjct: 1 MSDIILNVQQLHKDY-VGEVNYKALKGIDFQLKRNEFVSVMGPSGSGKTTFLNCISTIDR 59
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P +GSI I+ + L ++ L K R ++ +FQ N ++ + TV ++ PL
Sbjct: 60 P----TNGSITINQKNPYELNDEDLAK-FRRSELGFVFQD-FNLVHTL-TVEENILLPLT 112
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
++ ++ R + +E +G++ EI+ + E+SGG KQRV IA A+I +P +++ADE
Sbjct: 113 LD-AVNAKEMTSRLAEVVEFLGIE-EIMKKRTFEISGGQKQRVAIARAVIHQPSLLLADE 170
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI---VEIG 237
PT LD ++ L + + + S++ +THD +A ++++ M G + ++ G
Sbjct: 171 PTGNLDSKAANSVMTLFQSIHETFQTSLLMVTHD-PYVASFAERVIFMQDGMLYNEIQRG 229
Query: 238 PSEKVYYE 245
+K +Y+
Sbjct: 230 DHKKQFYQ 237
>sp|P30293|LIVG_SALTY HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING
PROTEIN LIVG (LIV-I PROTEIN G) >gi|79077|pir||JH0670
high-affinity branched-chain amino acid transport LIV-I
system LivF protein - Salmonella typhimurium
>gi|217074|dbj|BAA02131.1| (D12589) LivF protein
[Salmonella typhimurium]
Length = 255
Score = 88.9 bits (217), Expect = 7e-17
Identities = 65/255 (25%), Positives = 131/255 (50%), Gaps = 19/255 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ +L V L M + G + AV++V+ +L + E++ L G +G GK+++ L G +
Sbjct: 1 MSQPLLAVNGLMMRF----GGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYK 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKE--IRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
P G G+I + R + GLP + + +R + +F+ M + + +Q ++
Sbjct: 57 PTG----GTITLRERHLEGLPGQQIARMGVVRTFQHVRLFR-EMTVIENLLVAQHQQLKT 111
Query: 119 LIYHRGM-------SREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALIL 171
++ + ++ +ALDRA +LE +GL E R L+ G ++R+ IA ++
Sbjct: 112 GLFSGLLKTPAFRRAQSEALDRAATWLERIGL-LEHANRQASNLAYGDQRRLEIARCMVT 170
Query: 172 EPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAG 231
+P+I++ DEP L+ ++ L+ L+ +++ I HD+ ++ ISD+I ++ G
Sbjct: 171 QPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Query: 232 KIVEIGPSEKVYYEP 246
+ G E++ P
Sbjct: 231 TPLANGTPEEIRNNP 245
>dbj|BAB06041.1| (AP001515) sugar ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 522
Score = 87.0 bits (212), Expect = 3e-16
Identities = 80/234 (34%), Positives = 116/234 (49%), Gaps = 27/234 (11%)
Query: 11 LKMYYFTSRGP-VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGS 69
L+M T P VKA+D V + KG V L GE+G GKS++ L+GM +P G
Sbjct: 7 LEMVDITKEFPGVKALDRVQLKVRKGSVHALMGENGAGKSTLMKILIGMYKPN----EGK 62
Query: 70 IKIDGREIV-GLPEDVLRKEIRWQKISMIFQGAMNALNPV--YTVGYQMI---EPLIYHR 123
I DG E+ D L K ISMI Q L+P+ TV + EP
Sbjct: 63 IIFDGEEVTFNSINDALDK-----GISMIHQ----ELSPIPEMTVAENIFLGREPTFGKS 113
Query: 124 GM-SREDALDRAMKYLEL--VGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
G+ + ++ LE + +DP + ELS Q + IA A+ +VI DE
Sbjct: 114 GLVDNKKLIEMTRNLLESLEINIDPR---KKMGELSIANTQMIEIAKAISFHSKLVIMDE 170
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIV 234
PT+A+ AQ+ +++ LKKK G+ +I+ITH +S L EI+D I++ GK +
Sbjct: 171 PTSAITEKEVAQLFKMIESLKKK-GVGIIYITHKMSELDEIADDISVFRDGKYI 223
Score = 81.9 bits (199), Expect = 9e-15
Identities = 66/270 (24%), Positives = 136/270 (49%), Gaps = 28/270 (10%)
Query: 1 MAKKILEVKNL-KMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMP 59
+ + IL VK+L K YF +DV+F++ KGE++G AG G G++ + T+ G+
Sbjct: 256 LGEVILSVKSLTKQDYF---------EDVSFEVRKGEIVGFAGLMGSGRTEVLETIFGVK 306
Query: 60 QPPGRIVSGSIKIDGREI-VGLPEDVLRKEIRW----QKISMIFQGAMNALNPVYTVGYQ 114
+ SG I ++G++ + P+D ++ + + +K++ +F ++ + TV
Sbjct: 307 EAE----SGEIFVNGQKARIKSPQDAVKNNMGFLTEDRKLTGLFL-PLSVRENMITVNID 361
Query: 115 MIEPLIYHRGMS-REDALDRAMK-YLELVGLDPEIVYRYPHELSGGMKQRVVIATALILE 172
+ + G ++D + K Y++ ++ + LSGG +Q+V++A L+
Sbjct: 362 KYINMGWLNGKRVKKDCEQQKQKLYIKTPSIEQIV-----ENLSGGNQQKVLLARWLLKN 416
Query: 173 PDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGK 232
PDI+ DEPT +DV +++ NL+ L + G +++ ++ +++ + + D+I +M+ GK
Sbjct: 417 PDILFLDEPTRGIDVGAKSEFYNLIFELASQ-GKAIVVVSSEMAEILGLCDRILVMHEGK 475
Query: 233 IVEIGPSEKVYYEPAHPYTQKLLAAIPRLH 262
+ E+ E Y +LH
Sbjct: 476 VTGELTREEANQEKIMQYATGQAKMAKKLH 505
>gb|AAC15686.1| (AF045938) putative ABC transporter nucleotide binding subunit;
PstB [Mycobacterium smegmatis]
Length = 258
Score = 86.6 bits (211), Expect = 4e-16
Identities = 76/268 (28%), Positives = 132/268 (48%), Gaps = 26/268 (9%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
MAK+ L++K + +YY G + + + +SGCGKS++ TL M +
Sbjct: 1 MAKR-LDLKEVNIYY----GGSTRLPTCHSRCSRAASRRIISQSGCGKSTVLRTLNRMHE 55
Query: 61 P-PGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
PG V GS+ +DG +I G D + + I M+FQ NP T+ +
Sbjct: 56 VIPGARVEGSVLLDGEDIYGPGVDPVGVR---KTIGMVFQRP----NPFPTMSIRDNAVA 108
Query: 120 -IYHRGMSREDALDR-AMKYLELVGLDPEIVYRYPHE---LSGGMKQRVVIATALILEPD 174
+ +G+ + LD A + L L E+ R LSGG +QR+ IA A+ ++PD
Sbjct: 109 GLKLQGVRNKKTLDEVAERSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVQPD 168
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIM------ 228
+++ D+P +ALD + I +L+ L KL +++ +TH++ A +SD+ A
Sbjct: 169 VLLMDDPCSALDPISTLAIEDLIATL--KLDYTIVIVTHNMQQAARVSDQTAFFNLEATG 226
Query: 229 YAGKIVEIGPSEKVYYEPAHPYTQKLLA 256
G+++EI +EK++ P T+ ++
Sbjct: 227 KPGRLIEIDDTEKIFSNPRQKATEDYIS 254
>pir||B83354 probable ATP-binding component of ABC transporter PA2329 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948364|gb|AAG05717.1|AE004659_3 (AE004659) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 278
Score = 86.2 bits (210), Expect = 5e-16
Identities = 64/234 (27%), Positives = 113/234 (47%), Gaps = 27/234 (11%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ +L+ + + + Y G + D L GEV+ + G SG GKSS+ L G+ +
Sbjct: 1 MSEALLDARGIALGYPRGAGWQAVLGDFELRLGAGEVVSILGPSGVGKSSLLRVLAGLQE 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P +GS+++ G + G V ++ FQ +P + + +
Sbjct: 61 P----AAGSVRVLGEPLRGPHPGV----------AVAFQ------DPSLLPWLNLEKNVA 100
Query: 121 YHRGMSREDALDRAMKYLEL------VGLDPEIVYRYPHELSGGMKQRVVIATALILEPD 174
+ +R+ LD A + + VGL+ RYP +LSGGM QR +A L +P
Sbjct: 101 FGLDFARQPHLDAATRQARVDQAIAAVGLEHARA-RYPAQLSGGMAQRTALARCLARQPK 159
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIM 228
+++ DEP ALD V +A + L+ R + G +++ ITHD+ +S++I ++
Sbjct: 160 VLLLDEPFGALDEVTRADMQQLLLRAIHERGTAVVLITHDIDEALLLSERILLL 213
>sp|P22730|LIVG_ECOLI HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING
PROTEIN LIVG (LIV-I PROTEIN G) >gi|1073548|pir||S47674
livG protein - Escherichia coli
>gi|466591|gb|AAB18430.1| (U00039) CG Site No. 553
[Escherichia coli] >gi|1789864|gb|AAC76480.1| (AE000421)
ATP-binding component of high-affinity branched-chain
amino acid transport system [Escherichia coli K12]
Length = 255
Score = 85.8 bits (209), Expect = 6e-16
Identities = 64/255 (25%), Positives = 129/255 (50%), Gaps = 19/255 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ +L V L M + G + AV++V +L E++ L G +G GK+++ L G +
Sbjct: 1 MSQPLLSVNGLMMRF----GGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYK 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKE--IRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
P G G+I + + + GLP + + +R + +F+ M + + +Q ++
Sbjct: 57 PTG----GTILLRDQHLEGLPGQQIARMGVVRTFQHVRLFR-EMTVIENLLVAQHQQLKT 111
Query: 119 LIYHRGM-------SREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALIL 171
++ + ++ +ALDRA +LE +GL E R L+ G ++R+ IA ++
Sbjct: 112 GLFSGLLKTPSFRRAQSEALDRAATWLERIGL-LEHANRQASNLAYGDQRRLEIARCMVT 170
Query: 172 EPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAG 231
+P+I++ DEP L+ ++ L+ L+ +++ I HD+ ++ ISD+I ++ G
Sbjct: 171 QPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Query: 232 KIVEIGPSEKVYYEP 246
+ G E++ P
Sbjct: 231 TPLANGTPEQIRNNP 245
>pir||C71307 probable ABC transporter, ATP-binding protein - syphilis spirochete
>gi|3322874|gb|AAC65555.1| (AE001233) ABC transporter,
ATP-binding protein [Treponema pallidum]
Length = 226
Score = 85.8 bits (209), Expect = 6e-16
Identities = 66/236 (27%), Positives = 121/236 (50%), Gaps = 10/236 (4%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M IL V+ + + + ++ + DV+F + + + + GESGCGKS++ + GM
Sbjct: 1 MNDPILSVEQVSKSFCCATERIQILSDVSFSVPRAVKVAITGESGCGKSTLLNIIGGMEH 60
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
SG +++ +++ L E L E R Q + ++FQ + L + M+ LI
Sbjct: 61 AD----SGIVRVLSCDVLTLHEHALT-EYRRQFLGLVFQ-FHHLLRDFTALENVMLPGLI 114
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
G S + RA + LE V + + + +P ++SGG +QR +A ALI +P +++ADE
Sbjct: 115 --AGKSYREVRARAYELLEKVRV-VQRAHHFPAQMSGGERQRTAVARALINDPTLILADE 171
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
PT LD + +L+ L ++ +++ +THD I A ++D + G ++ I
Sbjct: 172 PTGNLDPKNALIVQDLLFSLTEEYQKTLLIVTHDPRI-ASMTDYRYQLQQGSLIRI 226
>emb|CAC11370.1| (AL445063) gliding motility protein related [Thermoplasma
acidophilum]
Length = 305
Score = 84.7 bits (206), Expect = 1e-15
Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 27/243 (11%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M K++EV++L+ Y G VDDV+F + KGE+ GL G++G GK++ T+ +
Sbjct: 1 MPDKVIEVEHLRQTY---DGRTFVVDDVSFYVLKGEIYGLLGKNGAGKTTTIRTMTTILP 57
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
+ G ++I G ++ E + R+ I ++ Q + + +E +
Sbjct: 58 ----VHYGKVRILGMDVSENAEKIRRR------IGVVLQNE--------SFDFASVERNL 99
Query: 121 YHRGM----SREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIV 176
GM RE R + LE+ L R ELSGG K+R+ +A + + D++
Sbjct: 100 KVYGMLWDVPREVLKARIEEVLEVFDLGQLRKVR-AMELSGGQKKRLQVAREFLHDMDLL 158
Query: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
DEPT LD +++ ++N + R K + GL++++ T + + D+IAIM GKIV
Sbjct: 159 FLDEPTVGLDPIMRRSVLNYI-RDKARKGLTVLYTTQIMEEADYLCDRIAIMNRGKIVAE 217
Query: 237 GPS 239
G S
Sbjct: 218 GTS 220
>gb|AAD45713.1|AF160811_1 (AF160811) L-arabinose transport, ATP binding protein [Bacillus
stearothermophilus]
Length = 513
Score = 83.9 bits (204), Expect = 2e-15
Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 32/245 (13%)
Query: 1 MAKKILEVKNLKMYYFTSRGP-VKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMP 59
M++ ILE++ + T + P VKA+D+V F + +GE+ L GE+G GKS++ L G+
Sbjct: 1 MSEFILEMRGI-----TKQFPGVKALDNVNFKVREGEIHALCGENGAGKSTLMKVLSGV- 54
Query: 60 QPPGRIVSGSIKIDGREIVGLPEDVLRKEIRW-QKISMIFQGAMNALNPVYTVGYQMIEP 118
P G DG EIV E K I+ +++ ++ AL P ++ +
Sbjct: 55 YPYG-------TYDG-EIVFKGEVCKFKNIKQSEQLGIVIIHQELALIPYLSIAENIF-- 104
Query: 119 LIYHRG----MSREDALDRAMKYLELVGLDPEIVYRYPHELSG----GMKQRVVIATALI 170
L R ++ + + + K L+ VGL+ PH L G G +Q V IA AL
Sbjct: 105 LGNERAKKGIINWNETIAQTKKLLQKVGLEES-----PHTLVGQLGVGKQQLVEIAKALA 159
Query: 171 LEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYA 230
+ ++I DEPT AL+ ++NL+ LKK+ GLS I I+H L+ + +++D I I+
Sbjct: 160 KDVKLLILDEPTAALNEDDSENLLNLLLELKKQ-GLSAIIISHKLNEITKVADSITILRD 218
Query: 231 GKIVE 235
GK +E
Sbjct: 219 GKTIE 223
>pir||F37074 leucine transport protein livG - Escherichia coli
>gi|146635|gb|AAA83886.1| (J05516) livG gene product
[Escherichia coli]
Length = 255
Score = 83.9 bits (204), Expect = 2e-15
Identities = 63/255 (24%), Positives = 128/255 (49%), Gaps = 19/255 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M++ +L V L M + G + AV++V +L E++ L G +G GK+++ L G +
Sbjct: 1 MSQPLLSVNGLMMRF----GGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYK 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKE--IRWQKISMIFQGAMNALNPVYTVGYQMIEP 118
P G G+I + + + GLP + + +R + +F+ M + + +Q ++
Sbjct: 57 PTG----GTILLRDQHLEGLPGQQIARMGVVRTFQHVRLFR-EMTVIENLLVAQHQQLKT 111
Query: 119 LIYHRGM-------SREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALIL 171
++ + ++ + LDRA +LE +GL E R L+ G ++R+ IA ++
Sbjct: 112 GLFSGLLKTPSFRRAQSERLDRAATWLERIGL-LEHANRQASNLAYGDQRRLEIARCMVT 170
Query: 172 EPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAG 231
+P+I++ DEP L+ ++ L+ L+ +++ I HD+ ++ ISD+I ++ G
Sbjct: 171 QPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQG 230
Query: 232 KIVEIGPSEKVYYEP 246
+ G E++ P
Sbjct: 231 TPLANGSPEQIRNNP 245
>gb|AAD44229.1|AF143772_35 (AF143772) DrrA [Mycobacterium avium]
Length = 315
Score = 83.9 bits (204), Expect = 2e-15
Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 18/252 (7%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+ +EV+ L + G A+ V F + G V GL G +G GK++ L + +
Sbjct: 1 MSAPAIEVEGLTKKF---GGSTVALAGVDFSVPAGTVCGLLGHNGAGKTTTINILSTLIR 57
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P SG + G ++V P +V + S+ G L+P+ T G + +
Sbjct: 58 P----TSGRASVAGHDVVRRPAEV--------RASIGMAGQFTGLDPMLT-GRENLVLFS 104
Query: 121 YHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADE 180
RG++R A RA + LE L + R SGGM +RV +A+AL++ P ++ DE
Sbjct: 105 RLRGLNRRRAKARADELLEQFNL-VDAADRRLSTYSGGMFRRVDLASALVVPPKVLFLDE 163
Query: 181 PTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEIGPSE 240
PTT LD + + L+ L+ + G++++ T L +SD I ++ G+++ G SE
Sbjct: 164 PTTGLDPRSRRDVWALVSSLRVQ-GITVLLTTQYLEEADVLSDSIVVIDHGRVIASGTSE 222
Query: 241 KVYYEPAHPYTQ 252
++ Y Q
Sbjct: 223 ELKRAVGTSYCQ 234
>gb|AAD02044.1| (AF035964) ATP-binding protein A [Brucella abortus]
Length = 622
Score = 83.1 bits (202), Expect = 4e-15
Identities = 70/256 (27%), Positives = 126/256 (48%), Gaps = 38/256 (14%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+A+ L+ + +Y +G +K +++ + G+ +GL G SG GKS++ L+
Sbjct: 360 VARGDLDFDEIGFHYGRGKGVIK---NLSLTIPAGQKVGLVGRSGAGKSTLVNLLLRFYD 416
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRW--QKISMIFQGAMNALNPVYTVGYQMIEP 118
+ G I IDG++I + +D LR I Q S++ + E
Sbjct: 417 ----LEKGRILIDGQDISQVTQDSLRANIGMVTQDTSLLHRSVR--------------EN 458
Query: 119 LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPH------------ELSGGMKQRVVIA 166
++Y R + E+ L +A++ + P++V +LSGG +QR+ IA
Sbjct: 459 IMYGRPDASEEMLQQAIRLAQADQFIPQLVDPKGRRGLDAHVGERGVKLSGGQRQRIAIA 518
Query: 167 TALILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIA 226
++ + I+I DE T+ALD V+A I + + L + G ++I I H LS +A + D++
Sbjct: 519 RVMLKDAPILILDEATSALDSEVEAAIQDSLNTLME--GKTVIAIAHRLSTIAAL-DRLV 575
Query: 227 IMYAGKIVEIGPSEKV 242
+M G+IVE G E++
Sbjct: 576 VMDKGRIVEDGTHEEL 591
>sp|P72335|NODI_RHIS3 NODULATION ATP-BINDING PROTEIN I >gi|1531621|gb|AAB16898.1|
(U53327) NodI [Rhizobium sp. N33]
Length = 304
Score = 80.0 bits (194), Expect = 3e-14
Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 24/241 (9%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
M+K +++ +K + G V+ ++F + GE GL G +G GKS+I L+GM
Sbjct: 1 MSKVAIDLAGVKKSF----GDKLVVNGLSFTVASGECFGLLGPNGAGKSTIARMLLGMTV 56
Query: 61 PPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPLI 120
P +G I + G E VG + RK I ++ Q + L+ +TV + L+
Sbjct: 57 PD----AGKITVLG-EPVGARSRLARKSI-----GVVPQ--FDNLDQEFTVRENL---LV 101
Query: 121 YHR--GMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIA 178
+ R GMS + LE L+ + R ELSGGMK+R+ +A ALI +P +++
Sbjct: 102 FGRYFGMSTRKIKEVIPSLLEFARLESKADARVG-ELSGGMKRRLTLARALINDPQLLVM 160
Query: 179 DEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAG-KIVEIG 237
DEPTT LD + I ++ L + G ++I TH + + D++ ++ G K+ E
Sbjct: 161 DEPTTGLDPHARHLIWERLRFLLAR-GKTIILTTHFMEEAERLCDRLCVLEHGRKLAEGS 219
Query: 238 P 238
P
Sbjct: 220 P 220
>sp|P36947|RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >gi|7445938|pir||H69689
ribose ABC transporter (ATP-binding protein) rbsA -
Bacillus subtilis >gi|1894759|emb|CAB07463.1| (Z92953)
ATP-binding transport protein [Bacillus subtilis]
>gi|2636119|emb|CAB15611.1| (Z99122) ribose ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 493
Score = 79.2 bits (192), Expect = 6e-14
Identities = 64/239 (26%), Positives = 126/239 (51%), Gaps = 24/239 (10%)
Query: 1 MAKKILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQ 60
+ K+ EVKN + +G + +DV+F + GE++G++G G G++ + L G+
Sbjct: 251 LGDKVFEVKNASV-----KG---SFEDVSFYVRSGEIVGVSGLMGAGRTEMMRALFGVD- 301
Query: 61 PPGRIVSGSIKIDGREI-VGLPEDVLRKEIRWQKISMIFQGAM---NALNPVYTVGYQMI 116
R+ +G I I G++ + P++ ++K + + + +G + + +
Sbjct: 302 ---RLDTGEIWIAGKKTAIKNPQEAVKKGLGFITENRKDEGLLLDTSIRENIALPNLSSF 358
Query: 117 EP--LIYHRGMSREDALDRAMKYLELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPD 174
P LI H+ + +D +K L + PE R+ LSGG +Q+VVIA + + P
Sbjct: 359 SPKGLIDHK--REAEFVDLLIKRLTIKTASPETHARH---LSGGNQQKVVIAKWIGIGPK 413
Query: 175 IVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKI 233
++I DEPT +DV + +I LM L ++ G+++I ++ +L + +SD+I +++ G+I
Sbjct: 414 VLILDEPTRGVDVGAKREIYTLMNELTER-GVAIIMVSSELPEILGMSDRIIVVHEGRI 471
Score = 72.2 bits (174), Expect = 8e-12
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 20 GPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGRIVSGSIKIDGREIV- 78
G + + V+F L GEV L GE+G GKS++ L G+ + G I I+G E
Sbjct: 13 GKNQVLSGVSFQLMPGEVHALMGENGAGKSTLMNILTGLHKAD----KGQISINGNETYF 68
Query: 79 GLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL-IYHRGMSREDALDRAMKY 137
P++ + I + + M L ++ +G ++ L + + A ++ K
Sbjct: 69 SNPKEAEQHGIAFIHQELNIWPEMTVLENLF-IGKEISSKLGVLQTRKMKALAKEQFDKL 127
Query: 138 LELVGLDPEIVYRYPHELSGGMKQRVVIATALILEPDIVIADEPTTALDVVVQAQIINLM 197
+ LD E E S G +Q + IA AL+ +++I DEPT AL +++ ++
Sbjct: 128 SVSLSLDQEA-----GECSVGQQQMIEIAKALMTNAEVIIMDEPTAALTEREISKLFEVI 182
Query: 198 KRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVE 235
LKK G+S+++I+H + + I D+I IM GK V+
Sbjct: 183 TALKKN-GVSIVYISHRMEEIFAICDRITIMRDGKTVD 219
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124879708
Number of Sequences: 2977
Number of extensions: 5476739
Number of successful extensions: 19972
Number of sequences better than 1.0e-10: 1480
Number of HSP's better than 0.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 965
Number of HSP's that attempted gapping in prelim test: 16872
Number of HSP's gapped (non-prelim): 1812
length of query: 319
length of database: 189,106,746
effective HSP length: 54
effective length of query: 265
effective length of database: 156,788,448
effective search space: 41548938720
effective search space used: 41548938720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)