BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1197 (appF-1) DE:OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN
APPF.
(335 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75026 oligopeptide transport ATP-binding protein appf. PAB... 683 0.0
pir||F71211 probable oligopeptide transport ATP-binding protein ... 664 0.0
pir||C72536 probable oligopeptide transport ATP-binding protein ... 371 e-102
pir||G71014 probable dipeptide transport ATP-binding protein dpp... 361 8e-99
pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf... 351 7e-96
pir||C72289 oligopeptide ABC transporter, ATP-binding protein - ... 339 2e-92
pir||A72216 oligopeptide ABC transporter, ATP-binding protein - ... 321 1e-86
gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF... 319 4e-86
pir||B72424 oligopeptide ABC transporter, ATP-binding protein - ... 318 5e-86
dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 312 4e-84
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 307 2e-82
pir||F71130 probable oligopeptide transport ATP-binding protein ... 306 3e-82
pir||C72452 probable peptide transport ATP-binding protein APE22... 305 6e-82
pir||B72300 oligopeptide ABC transporter, ATP-binding protein - ... 304 1e-81
sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 303 2e-81
pir||A72618 probable oligopeptide transport ATP-binding protein ... 302 3e-81
pir||T34760 oligopeptide ABC transporter ATP-binding protein - S... 298 6e-80
dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 293 2e-78
pir||G75380 peptide ABC transporter, ATP-binding protein - Deino... 292 4e-78
pir||H72366 oligopeptide ABC transporter, ATP-binding protein - ... 289 3e-77
emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related ... 289 3e-77
sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 287 9e-77
gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia... 287 1e-76
sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 287 2e-76
emb|CAC05751.1| (AL391751) putative peptide transport system ATP... 286 2e-76
gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding;... 286 3e-76
sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 282 4e-75
gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis] ... 277 1e-73
sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 276 3e-73
emb|CAA39791.1| (X56347) OppF [Bacillus subtilis] 276 3e-73
pir||B69856 oligopeptide transport ATP-binding protein homolog y... 275 5e-73
pir||C72371 oligopeptide ABC transporter, ATP-binding protein - ... 275 7e-73
dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 271 1e-71
gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 270 2e-71
gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis] 267 1e-70
pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 ... 266 3e-70
pir||F83082 probable ATP-binding component of ABC dipeptide tran... 265 4e-70
pir||F75202 dipeptide abc transporter, dipeptide-binding protein... 263 2e-69
pir||D72371 oligopeptide ABC transporter, ATP-binding protein - ... 261 8e-69
pir||D75142 oligopeptide transport ATP-binding protein appf PAB0... 261 8e-69
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 259 3e-68
pir||T35983 probable peptide transport ATP-binding protein - Str... 257 1e-67
gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (d... 257 1e-67
pir||F71163 probable oligopeptide transport ATP-binding protein ... 256 4e-67
gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola] 253 2e-66
gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocy... 252 5e-66
pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf... 252 5e-66
pir||A72282 oligopeptide ABC transporter, ATP-binding protein - ... 250 2e-65
emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding pr... 250 2e-65
sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 249 3e-65
pir||C72720 probable oligopeptide transport ATP-binding protein ... 247 1e-64
gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-bindi... 247 1e-64
sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 247 2e-64
pir||C72300 oligopeptide ABC transporter, ATP-binding protein - ... 246 2e-64
dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elon... 246 3e-64
pir||G75026 oligopeptide transport ATP-binding protein appd. PAB... 246 3e-64
pir||F70141 probable oligopeptide transport ATP-binding protein ... 243 2e-63
pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC... 243 2e-63
pir||C72421 oligopeptide ABC transporter, ATP-binding protein - ... 243 2e-63
dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [O... 243 2e-63
pir||C72424 oligopeptide ABC transporter, ATP-binding protein - ... 243 3e-63
pir||A72452 probable peptide transport ATP-binding protein APE22... 242 4e-63
dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-bindin... 242 6e-63
sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 242 6e-63
pir||E64820 probable oligopeptide transport protein - Escherichi... 242 6e-63
pir||G71211 probable oligopeptide transport ATP-binding protein ... 241 1e-62
sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 238 5e-62
pir||F71014 probable dipeptide transport ATP-binding protein dpp... 238 9e-62
dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 237 1e-61
gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sul... 236 2e-61
sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 235 5e-61
pir||F64557 dipeptide transport ATP-binding protein dppF - Helic... 235 6e-61
pir||A71952 dipeptide transport system ATP-binding protein - Hel... 235 6e-61
pir||H75117 peptide abc transporter ATP-binding protein PAB1874 ... 235 6e-61
pir||T45281 probable ABC transporter intracellular ATPase chain ... 234 1e-60
pir||A72284 oligopeptide ABC transporter, ATP-binding protein - ... 233 3e-60
pir||F72617 probable dipeptide transport system ATP-binding prot... 231 9e-60
sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 229 3e-59
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 228 8e-59
pir||H72215 oligopeptide ABC transporter, ATP-binding protein - ... 227 1e-58
pir||H75380 peptide ABC transporter, ATP-binding protein - Deino... 226 2e-58
gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T... 226 4e-58
pir||E72393 oligopeptide ABC transporter, ATP-binding protein - ... 225 5e-58
sp|Q07734|OPPF_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 224 2e-57
emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyo... 224 2e-57
pir||A72371 oligopeptide ABC transporter, ATP-binding protein - ... 223 2e-57
gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus p... 223 2e-57
emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter... 222 3e-57
sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 222 4e-57
pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 ... 220 2e-56
gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1] 220 2e-56
pir||H70788 probable peptidetransport system ABC-transporter ATP... 218 7e-56
pir||T34759 oligopeptide ABC transporter ATP-binding protein - S... 218 7e-56
emb|CAC12447.1| (AL445067) probable dipeptide transport system, ... 218 9e-56
sp|P77622|YDDO_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 217 1e-55
pir||E72536 probable oligopeptide transport ATP-binding protein ... 217 1e-55
dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 217 1e-55
emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD)... 216 3e-55
pir||E72428 oligopeptide ABC transporter, ATP-binding protein - ... 214 1e-54
sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 214 1e-54
pir||S75333 oligopeptide transport protein oppF - Synechocystis ... 214 1e-54
dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 214 1e-54
pir||B82393 ABC transporter, ATP-binding protein VCA0977 [import... 213 2e-54
sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 213 2e-54
pir||T03432 probable transport protein accC - Agrobacterium tume... 213 2e-54
gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD... 212 4e-54
gi|10954942 Probable accC [Agrobacterium tumefaciens] >gi|649829... 212 5e-54
gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T... 210 2e-53
gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus ... 209 3e-53
gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis] 209 4e-53
pir||D38447 sporulation initiation protein spo0KD - Bacillus sub... 209 4e-53
sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 209 4e-53
gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus ... 208 6e-53
pir||D71163 probable oligopeptide transport ATP-binding protein ... 208 7e-53
gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola] 208 7e-53
pir||D83419 probable ATP-binding component of ABC transporter PA... 208 7e-53
pir||E64557 dipeptide transport ATP-binding protein dppD - Helic... 208 1e-52
gi|10954710 hypothetical ABC-transporter gene~similar to moaD ge... 208 1e-52
emb|CAC05750.1| (AL391751) putative peptide transport system ATP... 208 1e-52
dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 207 2e-52
pir||H71951 dipeptide transport system dipeptide transport syste... 206 2e-52
pir||D72289 oligopeptide ABC transporter, ATP-binding protein - ... 206 4e-52
pir||T45280 probable ABC transporter intracellular ATPase chain ... 205 5e-52
pir||F72428 oligopeptide ABC transporter, ATP-binding protein - ... 205 5e-52
gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (d... 205 6e-52
gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis] 205 6e-52
gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocy... 204 1e-51
pir||C75142 oligopeptide transport ATP-binding protein appf PAB0... 203 2e-51
pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd... 202 6e-51
dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 201 7e-51
pir||E71130 probable oligopeptide transport ATP-binding protein ... 201 1e-50
gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dp... 201 1e-50
gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter A... 198 6e-50
sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 198 1e-49
dbj|BAA15129.1| (D90788) Dipeptide transport ATP-binding protein... 198 1e-49
pir||C82442 probable peptide ABC transporter, ATP-binding protei... 198 1e-49
pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 ... 197 2e-49
pir||B83389 probable ATP-binding component of ABC transporter PA... 196 2e-49
gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . ... 195 6e-49
pir||D72720 probable oligopeptide transport ATP-binding protein ... 195 6e-49
sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 194 1e-48
pir||B72421 oligopeptide ABC transporter, ATP-binding protein - ... 194 2e-48
pir||B72282 oligopeptide ABC transporter, ATP-binding protein - ... 194 2e-48
pir||G72049 peptide ABC transporter, ATP-binding protein CP0064 ... 193 3e-48
sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 192 5e-48
pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC... 192 5e-48
pir||G72283 oligopeptide ABC transporter, ATP-binding protein - ... 192 6e-48
gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana] 191 8e-48
pir||D72393 oligopeptide ABC transporter, ATP-binding protein - ... 191 8e-48
sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 191 1e-47
sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 190 2e-47
sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 190 2e-47
pir||E70141 oligopeptide transport ATP-binding protein oppD - Ly... 190 2e-47
pir||F71483 probable dipeptide transport - Chlamydia trachomatis... 189 3e-47
pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 ... 188 7e-47
pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 ... 187 2e-46
dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding prot... 186 4e-46
sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 186 4e-46
gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [H... 182 7e-45
sp|P50980|OPPD_LACLC OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 180 2e-44
sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 180 2e-44
sp|Q07733|OPPD_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 180 3e-44
pir||T35982 probable peptide transport ATP-binding protein - Str... 180 3e-44
dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [O... 179 4e-44
emb|CAA10913.1| (AJ222649) sapF [Erwinia chrysanthemi] 176 4e-43
pir||B81746 peptide ABC transporter, ATP-binding protein TC0061 ... 175 7e-43
sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 173 3e-42
pir||B64551 oligopeptide ABC transporter, ATP-binding protein - ... 171 1e-41
emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport s... 170 2e-41
pir||E71957 ABC transporter, ATP-binding protein - Helicobacter ... 169 4e-41
gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus ... 166 5e-40
gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . ... 162 5e-39
dbj|BAA15988.1| (D90849) Oligopeptide transport ATP-binding prot... 160 2e-38
gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport pro... 159 6e-38
emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi] 158 8e-38
pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 ... 158 1e-37
dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus] 157 2e-37
gb|AAF73561.1| (AE002315) peptide ABC transporter, ATP-binding p... 154 1e-36
sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 153 2e-36
sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 150 2e-35
gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae] 149 4e-35
gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus ... 147 2e-34
pir||E71545 probable oligopeptide transport ATPase - Chlamydia t... 145 1e-33
emb|CAC00366.1| (AL160371) probable oligopeptide transport ATP-b... 145 1e-33
sp|P16678|PHNK_ECOLI PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN ... 139 4e-32
pir||S56325 hisP protein-like nucleotide-binding protein phnK - ... 139 4e-32
pir||C81179 spermidine/putrescine ABC transporter, ATP-binding p... 137 2e-31
sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 132 7e-30
pir||D83194 polyamine transport protein PotA PA3607 [imported] -... 127 2e-28
pir||C75369 amino acid ABC transporter, ATP-binding protein - De... 124 1e-27
gb|AAA26354.1| (M96263) phnK [Sinorhizobium meliloti] 122 8e-27
dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacill... 120 3e-26
pir||D75308 sugar ABC transportor, ATP-binding protein - Deinoco... 118 1e-25
pir||E83001 probable ATP-binding component of ABC transporter PA... 109 3e-23
pir||T34822 ABC-transporter ATP binding protein - Streptomyces c... 108 8e-23
pir||F72485 probable high-affinity branched-chain amino acid tra... 108 1e-22
gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana] 101 1e-20
sp|P57031|LOLD_NEIMB LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 100 2e-20
pir||S75010 ABC-type transport protein sll1001 - Synechocystis s... 99 9e-20
emb|CAC11370.1| (AL445063) gliding motility protein related [The... 98 1e-19
gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . ... 98 1e-19
pir||B70327 ABC transporter - Aquifex aeolicus >gi|2982983|gb|AA... 97 3e-19
pir||S76632 hypothetical protein - Synechocystis sp. (strain PCC... 96 4e-19
sp|P57030|LOLD_NEIMA LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PR... 96 4e-19
gb|AAG34709.1|AF320001_2 (AF320001) putative ATP binding protein... 95 1e-18
sp|P21629|BRAF_PSEAE HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRA... 94 2e-18
pir||E83288 probable ATP-binding component of ABC transporter PA... 94 2e-18
gi|11498986 branched-chain amino acid ABC transporter, ATP-bindi... 94 3e-18
sp|P31219|YBBA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 93 4e-18
pir||C71307 probable ABC transporter, ATP-binding protein - syph... 93 4e-18
pir||D81263 probable ABC transport system ATP-binding protein Cj... 93 4e-18
emb|CAB88835.1| (AL353832) putative ABC-transport protein, ATP-b... 92 7e-18
pir||E72314 ribose ABC transporter, ATP-binding protein - Thermo... 90 3e-17
emb|CAB95741.1| (AJ276960) putative ABC transporter [Staphylococ... 90 4e-17
emb|CAB76006.1| (AL157916) putative ABC transporter, ATP-binding... 89 7e-17
pir||G72290 branched chain amino acid ABC transporter, ATP-bindi... 85 8e-16
emb|CAC05746.1| (AL391751) putative peptide transport system ATP... 85 8e-16
gb|AAD44229.1|AF143772_35 (AF143772) DrrA [Mycobacterium avium] 82 1e-14
sp|P30293|LIVG_SALTY HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRA... 78 1e-13
pir||S75197 ABC-type transport protein slr2044 - Synechocystis s... 78 1e-13
gb|AAC67220.1| (U78968) ATPase protein DppD [Streptococcus pyoge... 77 2e-13
pir||S74384 high-affinity branched-chain amino acid transport AT... 74 2e-12
pir||T30218 ABC-transport protein - Streptomyces hygroscopicus >... 73 6e-12
pir||E69771 ABC transporter (ATP-binding protein) homolog ydbJ -... 72 1e-11
pir||B83629 probable ATP-binding component of ABC transporter PA... 72 1e-11
sp|Q55791|Y075_SYNY3 PROBABLE ATP-DEPENDENT TRANSPORTER SLR0075 ... 71 2e-11
pir||S74749 ABC-type transport protein slr0982 - Synechocystis s... 70 4e-11
>pir||F75026 oligopeptide transport ATP-binding protein appf. PAB1197 -
Pyrococcus abyssi (strain Orsay)
>gi|5459166|emb|CAB50652.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF. [Pyrococcus abyssi]
Length = 335
Score = 683 bits (1743), Expect = 0.0
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT
Sbjct: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV
Sbjct: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL
Sbjct: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG
Sbjct: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH 300
RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH
Sbjct: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH 300
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGEI 335
PRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGEI
Sbjct: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGEI 335
>pir||F71211 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3258402|dbj|BAA31085.1|
(AP000007) 335aa long hypothetical oligopeptide
transport ATP-binding protein appF [Pyrococcus
horikoshii]
Length = 335
Score = 664 bits (1694), Expect = 0.0
Identities = 317/335 (94%), Positives = 333/335 (98%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+EPILKVENLKKYFP+RRGFL++LRGEPQ+FV+AVDG+SFE+YKQQVFALVGESGCGKT
Sbjct: 1 MSEPILKVENLKKYFPVRRGFLSALRGEPQKFVKAVDGVSFEIYKQQVFALVGESGCGKT 60
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TTGKL+VKLLEPTDGKIYLEGQDVT+LRTKEEIKAYRR+VQMIFQDPFSSMNPRFRIYDV
Sbjct: 61 TTGKLIVKLLEPTDGKIYLEGQDVTELRTKEEIKAYRRKVQMIFQDPFSSMNPRFRIYDV 120
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL
Sbjct: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NPTF+VADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG
Sbjct: 181 NPTFVVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH 300
RIVEMGPAKE+IDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIP GCRFH
Sbjct: 241 RIVEMGPAKEIIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPSGCRFH 300
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGEI 335
PRC+YFKKGLCD K+P+LIEYSHNHWVECHRVGEI
Sbjct: 301 PRCIYFKKGLCDVKQPQLIEYSHNHWVECHRVGEI 335
>pir||C72536 probable oligopeptide transport ATP-binding protein APE1576 -
Aeropyrum pernix (strain K1) >gi|5105263|dbj|BAA80576.1|
(AP000062) 377aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 377
Score = 371 bits (942), Expect = e-102
Identities = 184/355 (51%), Positives = 251/355 (69%), Gaps = 29/355 (8%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+VE+L+ +FP+RR + +PQ+FV+AVDG+SF + + +VF LVGESGCGKTTTGK
Sbjct: 19 VLRVEDLRVWFPLRRSITELITMKPQRFVKAVDGVSFSIARGEVFCLVGESGCGKTTTGK 78
Query: 65 LVVKLLEPTDGKIY----------LEGQDVTQLRT---------KEEIKAYRRRVQMIFQ 105
+++L++ T G+++ LE + V L + + K RR +Q+++Q
Sbjct: 79 AILRLVKATGGRVFFKPKKEVLEELERRGVKSLGDGFVDLLAVPRRKFKPLRRELQIVYQ 138
Query: 106 DPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLS 165
DP+ S+NPRF I +LE+PLLIH IG R EREE++ + LE VK+TP +++ R+PH LS
Sbjct: 139 DPYGSLNPRFTIKRILEDPLLIHSIGNAR-EREEMVARMLEAVKLTPASDFMDRYPHQLS 197
Query: 166 GGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLS 225
GGQRQRVAIARA ILNP+ +VADEPVSMLDVSIRAEILEL+ +EK+G + L+ITHDL+
Sbjct: 198 GGQRQRVAIARAFILNPSLVVADEPVSMLDVSIRAEILELLLGFREKLGTSLLFITHDLA 257
Query: 226 TARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKG 285
ARY D IAVMYLG+IVE G A+ +I+ P+HPYT+AL+AA+PEP P + ++E+PIKG
Sbjct: 258 VARYICDRIAVMYLGKIVETGDARRIIERPIHPYTKALVAAIPEPDPSNRKKLREVPIKG 317
Query: 286 EVPSAVNIPPGCRFHPRCVYFK------KGLCDTKEPKL---IEYSHNHWVECHR 331
E+PSA IPPGCRFHPRCV ++ + +C KEP L E + V C R
Sbjct: 318 EIPSAAAIPPGCRFHPRCVEYEQDMDRLREMCPVKEPPLKRPTEGEEDRRVSCWR 372
>pir||G71014 probable dipeptide transport ATP-binding protein dppF - Pyrococcus
horikoshii >gi|3257836|dbj|BAA30519.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppF [Pyrococcus horikoshii]
Length = 329
Score = 361 bits (916), Expect = 8e-99
Identities = 178/331 (53%), Positives = 240/331 (71%), Gaps = 13/331 (3%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M EP+LKVENLKKYFP+R G L ++ +V+AVDG+SFE+YK + F LVGESGCGKT
Sbjct: 4 MPEPVLKVENLKKYFPVR-GLLRTVG-----WVKAVDGVSFEIYKGETFGLVGESGCGKT 57
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TTG+ +++L+EPTDG+I G+DVT+L+ E +K +RR+ Q++FQDP+SS++PR ++ +
Sbjct: 58 TTGRTILRLIEPTDGRIIFMGKDVTKLKGNE-LKWFRRKAQIMFQDPYSSLDPRQTVFQI 116
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ EP+ HGI + EE + K LE V + E ++ R+PH SGGQRQR+A+AR L L
Sbjct: 117 IMEPVRFHGIQVD--DPEEFVIKLLESVGLN--EMHLYRYPHEFSGGQRQRIALARLLAL 172
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P FIV DEP S LDVS++A IL +KEL+EK G TYL+I+HDL +Y +D I VMYLG
Sbjct: 173 KPEFIVLDEPTSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLG 232
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPE--RKDVIKELPIKGEVPSAVNIPPGCR 298
++VE+GPA +V +NPLHPYT+ L +A+P P P+ R+ K + + GE PS VN P GCR
Sbjct: 233 KLVEVGPADKVFENPLHPYTQMLFSAIPIPDPDIAREMKKKRMKVTGEPPSPVNPPKGCR 292
Query: 299 FHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
FHPRC Y K GLCD KEP L+E +H+V C
Sbjct: 293 FHPRCPYAKAGLCDKKEPPLVEVEKDHYVAC 323
>pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf) PAB1875 -
Pyrococcus abyssi (strain Orsay)
>gi|5458167|emb|CAB49656.1| (AJ248285) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 326
Score = 351 bits (891), Expect = 7e-96
Identities = 172/331 (51%), Positives = 237/331 (70%), Gaps = 13/331 (3%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M E +LKVENLKKYFPIR G ++ +V+AVDG+SFE+ + + F LVGESGCGKT
Sbjct: 1 MTETVLKVENLKKYFPIR-GLFRTIG-----WVKAVDGVSFEIKRGETFGLVGESGCGKT 54
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TTG+ +++L+EPTDGKI G+DVT+L+ EE+K +RR+ Q++FQDP+SS++PR ++ +
Sbjct: 55 TTGRTILRLIEPTDGKIIFMGKDVTKLKG-EELKWFRRKAQIMFQDPYSSLDPRQTVFQI 113
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ EP+ HGI + EE + + LE V + E ++ R+PH SGGQRQR+A+AR L L
Sbjct: 114 IMEPVKFHGIQVD--DPEEFVIRLLESVGLN--EMHLYRYPHEFSGGQRQRIALARLLAL 169
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P FIV DEP S LDVS++A IL +KEL+EK G TYL+I+HDL +Y +D I VMYLG
Sbjct: 170 KPEFIVLDEPTSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYLG 229
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPE--RKDVIKELPIKGEVPSAVNIPPGCR 298
++VE+GPA + +NPLHPYT+ L +A+P P P+ R+ K + + GE PS +N P GCR
Sbjct: 230 KLVEVGPADRIFENPLHPYTQMLFSAIPIPDPDLAREMKKKRMKVTGEPPSPINPPKGCR 289
Query: 299 FHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
FHPRC Y K GLCD +EP ++E +H+V C
Sbjct: 290 FHPRCPYAKAGLCDKEEPPMVEVEKDHYVAC 320
>pir||C72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 325
Score = 339 bits (861), Expect = 2e-92
Identities = 162/326 (49%), Positives = 243/326 (73%), Gaps = 6/326 (1%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+++V+NLKKYFP+++G + L +P++FV+AVDG++F++ + + LVGESG GKTTTG+
Sbjct: 3 LIEVQNLKKYFPVKQGPIDVLLRKPRKFVKAVDGVNFQIDEGKSLGLVGESGSGKTTTGR 62
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
++++L EPTDGKI +G+D+T+L +KEE++ R+ +Q+IFQDP +S+NP R+ +E
Sbjct: 63 VILRLEEPTDGKIIFDGRDITKL-SKEEMRKLRKEMQIIFQDPMASLNPYMRVGKAIEHA 121
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
L IHGIG+ R+ R+E++ + L V + P E+ R+P LSGGQRQRV IARALIL P
Sbjct: 122 LEIHGIGD-RSSRKEMVLEMLRRVNLEPAEDIYRRYPRELSGGQRQRVVIARALILKPRL 180
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
+VADE V+MLDVS+R+++L L++EL+++ +T L+ITHDL+T +Y D IAVMYLG+IVE
Sbjct: 181 VVADEAVAMLDVSVRSQLLRLLQELRKEFNLTMLFITHDLATTKYVCDEIAVMYLGKIVE 240
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCV 304
+G +++ NP HPYT+AL++AVPEP ++K K+ +GE P+ +++P GCRFHPRC
Sbjct: 241 IGDFEDIYLNPKHPYTQALISAVPEPSLKKK---KKFIPEGETPNPIDVPSGCRFHPRCP 297
Query: 305 YFKKGLCDTKEPKLIEYSHNHWVECH 330
Y + +C +EP+L NH V CH
Sbjct: 298 Y-RMDICMKEEPQLKAVEENHKVACH 322
>pir||A72216 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982328|gb|AAD36815.1|AE001813_7 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 321 bits (813), Expect = 1e-86
Identities = 159/330 (48%), Positives = 231/330 (69%), Gaps = 17/330 (5%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
+P+L+ +LKKYFP + ++ ++AVDGIS E+ + + LVGESGCGK+T
Sbjct: 11 KPLLQTVDLKKYFP-----------QGKRILKAVDGISIEIKEGETLGLVGESGCGKSTL 59
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+ ++KLL P GKI+ EG+D+T L KE +K YR+++Q+IFQDP S+NP+ + ++E
Sbjct: 60 GRTILKLLRPDGGKIFFEGKDITNLNDKE-MKPYRKKMQIIFQDPLGSLNPQMTVGRIIE 118
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
+PL+IH IG T+ ER + + + L+MV I E++ FPH SGGQ+QR+ IARAL LNP
Sbjct: 119 DPLIIHKIG-TKKERRKRVEELLDMVGIG--REFINSFPHEFSGGQQQRIGIARALALNP 175
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
FIV DEPVS LDVSI+A+I++L++E+++KMG++YL+I H+L+ + + +AVMYLG+I
Sbjct: 176 KFIVCDEPVSALDVSIQAQIIDLLEEIQQKMGISYLFIAHNLAVVEHISHKVAVMYLGKI 235
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPR 302
VE G ++ NP+HPYTRALL +VP+ IP + +KGE+PS +++P GCRF R
Sbjct: 236 VEYGDVDKIFLNPIHPYTRALLKSVPK-IPWDGQKQRFYSLKGELPSPIDLPKGCRFQTR 294
Query: 303 CVYFKKGLCDTKEPKLIEYSHNHWVECHRV 332
C KK +C KEP+L E NH+V CH V
Sbjct: 295 CTE-KKAICFEKEPELTEVEKNHFVSCHLV 323
>gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF)
[Archaeoglobus fulgidus] >gi|7442541|pir||B69471
dipeptide transport ATP-binding protein dppF -
Archaeoglobus fulgidus >gi|2648778|gb|AAB89479.1|
(AE000980) dipeptide ABC transporter, ATP-binding
protein (dppF) [Archaeoglobus fulgidus]
Length = 323
Score = 319 bits (808), Expect = 4e-86
Identities = 164/326 (50%), Positives = 229/326 (69%), Gaps = 10/326 (3%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+VENLKKYFP+++ L L + FVRAVDG+SFE+ + +V +LVGESGCGKTTTG+
Sbjct: 1 MLRVENLKKYFPVQKSVLEVLLSGRRDFVRAVDGVSFEMKQGEVLSLVGESGCGKTTTGR 60
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
++V L PT GKIY + +++T L ++EE + +R +QM+FQDP++S+NPR +I + L E
Sbjct: 61 IIVGLERPTSGKIYFKDREITSL-SEEEQRRMKRHIQMVFQDPYASLNPRMKIGEHLVES 119
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
L IHGI E E E+ L+ V + P E++ R P+ LSGGQRQRVAIARA+IL P F
Sbjct: 120 LTIHGIAEND-EAREMAMSMLDRVGL-PGEQFFNRMPYQLSGGQRQRVAIARAMILKPDF 177
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
+VADEPVSM+DVS+RA IL+L+ +++ ++ L+ITHDLS AR D IAVMYLG+I+E
Sbjct: 178 VVADEPVSMIDVSLRAAILDLLMSFRDEYNLSMLFITHDLSVARIVGDRIAVMYLGKIME 237
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCV 304
+G +EVI NP HPYT ALL++VP + + + V I G++ + ++IP GCR+HPRC
Sbjct: 238 IGKTREVIHNPRHPYTAALLSSVPSFVKKGRKV----EIIGDIANPIDIPSGCRYHPRCP 293
Query: 305 YFKKGLCDTKEPKLIEYSHNHWVECH 330
F + C +EP+L H CH
Sbjct: 294 -FAREKCKKEEPEL--EGGEHSFACH 316
>pir||B72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980543|gb|AAD35151.1|AE001692_8 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 338
Score = 318 bits (807), Expect = 5e-86
Identities = 157/332 (47%), Positives = 236/332 (70%), Gaps = 16/332 (4%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+V+ LKKYFP+ +GF + G +VRAVD +SF++ + + ALVGESGCGKTTT K
Sbjct: 3 LLEVKGLKKYFPLTKGFFKKVVG----YVRAVDDVSFDIKQGETLALVGESGCGKTTTAK 58
Query: 65 LVVKLLEPTDGKI--YLEGQDVTQLR-TKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
+++ ++PTDG + +L+G+DV + +++E+K YRR +QMIFQ+P++S+NPR ++ +++
Sbjct: 59 SILRAIDPTDGDVILHLDGKDVNIAKLSRDELKPYRRYMQMIFQNPYTSLNPRMKVKEIV 118
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
EPLL++GI + + E E+ + + L+ V + P EY+ R+PH SGGQRQR+ IARA+ L
Sbjct: 119 GEPLLVNGIAKGK-ELEDRVAELLKAVGLRP--EYMIRYPHAFSGGQRQRIVIARAIALR 175
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P +V DEP S LDVSIRA+IL L+ +L+E+ +TYL+ITHDLS + +D +AVMYLG+
Sbjct: 176 PKLVVCDEPTSALDVSIRAQILNLLMDLQEEFALTYLFITHDLSVVEHISDRVAVMYLGK 235
Query: 242 IVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHP 301
IVE+ +E+ +NP HPYT LL +VP+P P+ ++ + +PI+GEVP+ N P GC FHP
Sbjct: 236 IVELSSTEEIFENPKHPYTETLLRSVPKPDPDLREEL--VPIEGEVPNPANPPSGCYFHP 293
Query: 302 RCVYFKKGLCDTKEPK---LIEYSHNHWVECH 330
RC Y K +C + P+ L + H+V CH
Sbjct: 294 RCPY-AKSICKEEYPEFRNLGTEDNPHYVACH 324
>dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 322
Score = 312 bits (791), Expect = 4e-84
Identities = 158/331 (47%), Positives = 227/331 (67%), Gaps = 13/331 (3%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M +P+L+V+NL K F I GF + GE VRAVD +SF VY+ +V +VGESGCGK+
Sbjct: 1 MGKPLLEVKNLTKSFDINGGFFSRKVGE----VRAVDNLSFSVYEGEVLGIVGESGCGKS 56
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TTGK +++L+EP+ G++Y G ++T L ++ +++ RR +Q+IFQDP++S+NPR I +
Sbjct: 57 TTGKAILRLIEPSSGEVYFAGTEITAL-SEGDMRKRRRDMQIIFQDPYASLNPRHTIEKI 115
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ EPL++H IG T+ E+ E + + LE V ++ ++ R+PH SGGQRQR+ IARAL +
Sbjct: 116 IREPLIVHQIG-TKKEQLERVEELLETVGLS--SDHATRYPHQFSGGQRQRIGIARALAV 172
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
+P ++ DEPVS LDVS++++IL LM +LKE +TY++I HDLS ++ +D +AVMYLG
Sbjct: 173 HPKLVICDEPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLG 232
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKE-LPIKGEVPSAVNIPPGCRF 299
R+VEM ++ +NP HPYTRALL+AVP P P D KE + +KG+VPS N P GC F
Sbjct: 233 RMVEMATKDQLFENPKHPYTRALLSAVPVPDP---DAAKEKILLKGDVPSPSNPPEGCAF 289
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
H RC +C K P L E H+V CH
Sbjct: 290 HTRCPDC-MDVCKIKRPSLHEKEKGHYVACH 319
>pir||G75202 dipeptide abc transporter, dipeptide-binding protein PAB0095 -
Pyrococcus abyssi (strain Orsay)
>gi|5457579|emb|CAB49070.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 345
Score = 307 bits (777), Expect = 2e-82
Identities = 152/323 (47%), Positives = 220/323 (68%), Gaps = 10/323 (3%)
Query: 9 ENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVK 68
ENLKKYFP+R G + +V AVDGIS + K + F L GESGCGK+T G+L+++
Sbjct: 10 ENLKKYFPVRGGLFK----QKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLR 65
Query: 69 LLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIH 128
L+EPT+G IY +G D+T+L K+E++ RRR+ ++FQDP SS+NPR IYD L+ PL IH
Sbjct: 66 LIEPTEGSIYFDGIDITKL-DKDEMRKLRRRMGIVFQDPKSSLNPRMTIYDTLKRPLEIH 124
Query: 129 GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVAD 188
+ E+ E+ + I + LE V + EE++ R+PH LSGGQ QRV+IARA+I NP F+V D
Sbjct: 125 RLAESEEEKYDKIVEILEAVGLG--EEHLSRYPHELSGGQLQRVSIARAIITNPDFVVLD 182
Query: 189 EPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPA 248
EP S LD+S++A+IL L+ L+ K +TYL+I+HD+S +Y +D I +MYLG++VE+
Sbjct: 183 EPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVEILSI 242
Query: 249 KEVIDNPL-HPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFK 307
+ + HPYT LL + P P ++ +++ + GEVPS +N+PPGCRFH RC +
Sbjct: 243 DDFRKGEIYHPYTAYLLLSTPALHPSKR-TSRKVILTGEVPSPINVPPGCRFHVRCPFVT 301
Query: 308 KGLCDTKEPKLIEYSHNHWVECH 330
+ C +EP L+E +H+V CH
Sbjct: 302 Q-KCKDEEPPLVEIKKDHYVACH 323
>pir||F71130 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3257221|dbj|BAA29904.1|
(AP000003) 323aa long hypothetical oligopeptide
transport ATP-binding protein APPF [Pyrococcus
horikoshii]
Length = 323
Score = 306 bits (775), Expect = 3e-82
Identities = 159/329 (48%), Positives = 226/329 (68%), Gaps = 12/329 (3%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
++ +++V+NL K FP+ L + +RAVD +SFE+ K ++ LVGESGCGK+T
Sbjct: 3 SDTLIEVKNLTKLFPVTSSILGK-----KISIRAVDNVSFEIKKNEILGLVGESGCGKST 57
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
GKL+V+LLEPT G + +GQD+ +LR K+ +K YR+ VQM+FQ+P++S +PR +++ +
Sbjct: 58 LGKLLVRLLEPTSGTVLFKGQDIYKLRGKK-LKEYRKSVQMVFQNPYTSFDPRLTLFENI 116
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
EPL H + + E L + E V +TPPE+++ R+PH LSGGQ QR +IARA+ L
Sbjct: 117 AEPLYTHKLALNKEEALTLAMQYFEDVGLTPPEDFLMRYPHELSGGQLQRASIARAIALE 176
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P FIVADEP SMLD S+R+ IL L+K+L++++ ++L+ITHDL +A Y AD IAVMYLG+
Sbjct: 177 PEFIVADEPTSMLDASLRSGILNLIKKLRKELHTSWLFITHDLPSAYYIADRIAVMYLGK 236
Query: 242 IVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHP 301
IVE+G +KEV+ NPLHPYT+ALL A P+ +KE +KGE P V CRF P
Sbjct: 237 IVEIGESKEVLKNPLHPYTQALLEANLPIDPDAS--LKEPKVKGE-PKPVFETGYCRFFP 293
Query: 302 RCVY-FKKGLCDTKEPKLIEYSHNHWVEC 329
RC Y F+K C +EP L+E +H+V C
Sbjct: 294 RCPYAFEK--CKKEEPPLVEVKKDHYVAC 320
>pir||C72452 probable peptide transport ATP-binding protein APE2263 - Aeropyrum
pernix (strain K1) >gi|5105964|dbj|BAA81275.1|
(AP000064) 347aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 305 bits (772), Expect = 6e-82
Identities = 157/316 (49%), Positives = 209/316 (65%), Gaps = 6/316 (1%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
I+ + LK ++P+ L + G P VRAVDG+ + + +V A+VGESGCGKTT GK
Sbjct: 13 IVSIRGLKVHYPVYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGK 72
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
+V + EP+DG IY G+ +T R + + RR++QM+FQDP+ S++P + D + EP
Sbjct: 73 AIVGIEEPSDGAIYYRGELLTPHRLARD-RRLRRKLQMVFQDPYKSLDPLMPVGDQVAEP 131
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
L+IHG+ R + + LE V +TP E+ R PH LSGGQRQRVAIAR L+L P
Sbjct: 132 LVIHGLARGEEARRRAV-EMLETVGLTPGREFYWRKPHQLSGGQRQRVAIARTLVLEPEV 190
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
IVADEPVSM+DVS+RA IL+L+ + + G T + ITHD++ AR AD IAVMYLG+IVE
Sbjct: 191 IVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIAVMYLGKIVE 250
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCV 304
+G + VI+NP HPYT AL+ + P I R+ PI GEVPSAV IPPGCRFHPRC
Sbjct: 251 VGEPRSVIENPRHPYTAALVTSTPS-ISRRRP--PRFPISGEVPSAVAIPPGCRFHPRCP 307
Query: 305 YFKKGLCDTKEPKLIE 320
LC ++EP L+E
Sbjct: 308 -LASSLCRSREPALVE 322
>pir||B72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981604|gb|AAD36138.1|AE001766_4 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 341
Score = 304 bits (770), Expect = 1e-81
Identities = 158/335 (47%), Positives = 226/335 (67%), Gaps = 18/335 (5%)
Query: 5 ILKVENLKKYFPI-RRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
+L+V+NLKKYFPI +RGF + G +++AVDGISF + + + LVGESGCGKTTT
Sbjct: 3 LLEVKNLKKYFPIIKRGFRRKVVG----YLKAVDGISFHIEEGETLGLVGESGCGKTTTA 58
Query: 64 KLVVKLLEPTDGKIYL----EGQDVTQLRTKE-EIKAYRRRVQMIFQDPFSSMNPRFRIY 118
KL+++ +EPT+G+I L E D+T+L KE K RR +QMIFQDP+SS+NPR +
Sbjct: 59 KLIMRGIEPTEGEIVLNMDGEKVDITKLSEKELREKGVRRFLQMIFQDPYSSLNPRMTVR 118
Query: 119 DVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
D++ EPL+++G+ + + E + ++ L V + P EY+ R+PH SGGQRQR+AIARA+
Sbjct: 119 DIIAEPLVVNGVIKGKEEIDAIVSDLLRAVGLRP--EYMQRYPHAFSGGQRQRIAIARAI 176
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
L P ++ DEP S LDVS++A+I+ L+K+L+++ +TYL+I+HDL + + +AVMY
Sbjct: 177 ALKPKLVLCDEPTSALDVSVQAQIINLLKDLQKEYNLTYLFISHDLGVVEHITNRVAVMY 236
Query: 239 LGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCR 298
+GRIVE+ +E+ +P HPYT ALL+AVP+P P+RK K+ + GEVP N P GC
Sbjct: 237 VGRIVELAETEELFSSPKHPYTEALLSAVPKPDPKRKR--KKAQLTGEVPDPSNPPSGCY 294
Query: 299 FHPRCVYFKKGLCDTKEPKLIEY---SHNHWVECH 330
FHPRC Y K +C P L + H V CH
Sbjct: 295 FHPRCPY-AKAICKEVYPDLRNVGTDQNPHLVACH 328
>sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF
>gi|2119774|pir||I40544 oligopeptide transport
ATP-binding protein appF - Bacillus subtilis
>gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus
subtilis] >gi|2633491|emb|CAB12994.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 329
Score = 303 bits (768), Expect = 2e-81
Identities = 150/330 (45%), Positives = 225/330 (67%), Gaps = 12/330 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E IL++ ++KKYFPIR G G+ V+AVDG+SF + K + +VGESGCGK+T
Sbjct: 7 ETILELRDVKKYFPIRSGLFQRKVGD----VKAVDGVSFSLKKGETLGIVGESGCGKSTA 62
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+ +++L +PT+G+I +GQD++ L ++ K+ R+ +QM+FQDPF+S+NPR + +++
Sbjct: 63 GRTMIRLYKPTEGQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIK 122
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
EP H + T ER E + + L V + P + GR+PH SGGQRQR+ IARAL LNP
Sbjct: 123 EPFNTHNM-YTMRERNEKVEELLARVGLHP--SFAGRYPHEFSGGQRQRIGIARALTLNP 179
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
I+ADEPVS LDVSI+ +++ LM+EL+E+ +TYL+I+HDLS R+ +D + VMYLG++
Sbjct: 180 ELIIADEPVSALDVSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKM 239
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIK--ELPIKGEVPSAVNIPPGCRFH 300
+E+ E+ DNPLHPYT+ALL++V P+ ++ +K + +KGE+PS N P GC FH
Sbjct: 240 MELTGKHELYDNPLHPYTQALLSSV--PVTRKRGSVKRERIVLKGELPSPANPPKGCVFH 297
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
RC K +C + P+ E + +H+V CH
Sbjct: 298 TRCP-VAKPICKEQIPEFKEAAPSHFVACH 326
>pir||A72618 probable oligopeptide transport ATP-binding protein APE1402 -
Aeropyrum pernix (strain K1) >gi|5105085|dbj|BAA80399.1|
(AP000061) 347aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 302 bits (766), Expect = 3e-81
Identities = 157/334 (47%), Positives = 220/334 (65%), Gaps = 15/334 (4%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +++ LKKYFP++ F + +V+AVD ++ + + + LVGESG GKTT
Sbjct: 28 ELLVETVGLKKYFPVKSLFFT------RAYVKAVDNVTIGIPRGKTLGLVGESGSGKTTF 81
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+++++L EPT G+I+ +G DV +LR + +K +RRR Q+IFQDP+ S+NPR I++++
Sbjct: 82 GRVILRLEEPTGGRIFFDGIDVMKLRGRG-LKEFRRRAQIIFQDPYGSLNPRKTIFNLIA 140
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
EP+ +HGI + +E I L V + E ++ R+PH SGGQRQR+AIAR L L P
Sbjct: 141 EPIKVHGIKV--GDLQEYIVSLLYQVGLN--ETHLYRYPHEFSGGQRQRIAIARVLALKP 196
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
FIV DEP S LDVS++A+IL L+K+L+ K +TYL+I+HDL RY +D+IAVMYLG+I
Sbjct: 197 EFIVLDEPTSALDVSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKI 256
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPR 302
VE G A+EV + PLHPYT+ LL ++P P PE + IKGE PS +N P GCRF R
Sbjct: 257 VEFGEAEEVFEKPLHPYTKVLLESIPVPDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTR 316
Query: 303 C-VYFKKGLCDTKEPKLIEYSHNHWVECHRVGEI 335
C + K L +EP L E HWV C R GE+
Sbjct: 317 CPIAVDKCL---EEPPLEEVERGHWVACWRPGEL 347
>pir||T34760 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402247|emb|CAA20183.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 496
Score = 298 bits (755), Expect = 6e-80
Identities = 156/329 (47%), Positives = 217/329 (65%), Gaps = 10/329 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +LKV L+K+FPIR+G L G VRAVDGI FEV + +VGESGCGK+T
Sbjct: 37 ETLLKVTGLQKHFPIRKGLLQRQVGA----VRAVDGIDFEVRSGETLGVVGESGCGKSTM 92
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+L+ +LLEPT GK+ +G+D+T L ++ RR VQMIFQDP+SS+NPR I ++
Sbjct: 93 GRLITRLLEPTAGKVEFQGKDITHLGVGG-MRPLRRDVQMIFQDPYSSLNPRHTIGTIVS 151
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
P + G+ ++E + + L +V + P E+ R+PH SGGQRQR+ IARAL LNP
Sbjct: 152 APFKLQGVQPEGGVKKE-VQRLLSVVGLNP--EHYNRYPHEFSGGQRQRIGIARALALNP 208
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
+VADEPVS LDVSI+A+++ L+ +L++++G+TY+ I HDLS R+ +D IAVMYLG+I
Sbjct: 209 RLVVADEPVSALDVSIQAQVVNLLDDLQQELGLTYVIIAHDLSVVRHVSDRIAVMYLGKI 268
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKE-LPIKGEVPSAVNIPPGCRFHP 301
+E+ + P+HPYT+AL++AVP P P R+ E + +KG+VPS + P GCRFH
Sbjct: 269 MELADRDLLYKTPMHPYTKALMSAVPIPDPARRGAKSERILLKGDVPSPIAPPSGCRFHT 328
Query: 302 RCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
RC + +C T EP L E V CH
Sbjct: 329 RC-WKATQVCTTTEPPLKELRPGQQVACH 356
>dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 338
Score = 293 bits (742), Expect = 2e-78
Identities = 157/338 (46%), Positives = 224/338 (65%), Gaps = 14/338 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M + +LKVE LK+YFPI+ G L G V+AVD +SF +Y+ + ++VGESGCGK+
Sbjct: 1 MQKELLKVEGLKQYFPIKGGIL----GRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKS 56
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TTG+ +++L EPTDGKI +G+D+ L K E++ R+ +Q+IFQDP++S+NPR I V
Sbjct: 57 TTGRAILRLDEPTDGKIEFQGEDLLSLN-KREMRKKRKDLQIIFQDPYASINPRQTIRQV 115
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
LEE + I + R +R E I + ++ V + + RFPH SGGQRQR+ IARAL +
Sbjct: 116 LEEAMEIQKV-VPRDKRGERIRELMDTVGLGSHQ--ADRFPHEFSGGQRQRIGIARALSV 172
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NP IV DE VS LDVSI+A+++ L+K L+ + +TYL+I+HDL R+ +D + VMYLG
Sbjct: 173 NPKLIVCDEAVSALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLG 232
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH 300
RIVE+ + +NP HPYT+ALL+A+P P PE+K + + +KG+VPS ++ P GCRFH
Sbjct: 233 RIVEIADKTSLFENPQHPYTKALLSAIPVPDPEKKK--ERIILKGDVPSPIDPPNGCRFH 290
Query: 301 PRCVYFKKGLCDTKEPKL--IEY-SHNHWVECHRVGEI 335
RC F C T+ P+L +Y H CH + EI
Sbjct: 291 TRCP-FATDKCRTETPELRTADYMKDGHLAACHYMEEI 327
>pir||G75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459330|gb|AAF11129.1|AE002000_5 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 346
Score = 292 bits (740), Expect = 4e-78
Identities = 152/327 (46%), Positives = 224/327 (68%), Gaps = 11/327 (3%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+V NL+KYFPIR G ++ + V+AV+ I+F V K +V L+GESG GKTT G+
Sbjct: 27 LLEVNNLQKYFPIRGGLMSRVVAN----VKAVNDITFRVGKGEVVGLIGESGSGKTTAGR 82
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
+++L+EPT G++ G D+T+L K +++ YRR +Q+IFQDPF+S+NPR + D+L E
Sbjct: 83 ALLRLIEPTGGQVIFNGTDITKLG-KSQMRDYRREMQIIFQDPFASLNPRMTVSDILGEA 141
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
+ IH + +A R + I + L+ V + P E++GR+PH SGGQRQR+ IARAL ++P+F
Sbjct: 142 MQIHNLHPGKA-RVDRIAELLQRVGLRP--EHMGRYPHEFSGGQRQRIGIARALAVDPSF 198
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
IVADEPVS LDVSI+A+++ L+++L+E++G+T L+I HDL Y D + VMYLGRI+E
Sbjct: 199 IVADEPVSALDVSIQAQVVNLIQDLQEELGLTVLFIAHDLHVVEYICDRMIVMYLGRIME 258
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCV 304
+ P++E+ NP HPYT ALL+A P P P K + + ++G++PS +N P GC F RC
Sbjct: 259 IAPSRELNRNPKHPYTEALLSASPVPDPTIKR--QRIILEGDIPSPINPPSGCVFRTRCR 316
Query: 305 YFKKGLCDTKEPKLIEYSHNHWVECHR 331
Y C P+L E S +H+ C R
Sbjct: 317 YAIAD-CANIVPELREVSPDHFKACIR 342
>pir||H72366 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981043|gb|AAD35615.1|AE001728_16 (AE001728)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 389
Score = 289 bits (732), Expect = 3e-77
Identities = 160/389 (41%), Positives = 229/389 (58%), Gaps = 71/389 (18%)
Query: 6 LKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT--- 62
++V +L+KYFPIR+GFL + +V+AVD ISF V K + FALVGESGCGKTTT
Sbjct: 4 IEVLSLRKYFPIRKGFLVK---KIVGYVKAVDDISFSVEKGKTFALVGESGCGKTTTAKT 60
Query: 63 ---------GKLVVK-------LLEPTDGKIYLEGQDVT---QLRTK------------- 90
G++V+ ++ D + YLE V ++R K
Sbjct: 61 ILRLTNPTAGRVVIDGDDTTYYFMKRRDAENYLETTYVDIFREMREKLSPDQIVDVLEDV 120
Query: 91 ----------------------------EEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
E+ +RR++Q++FQDP SS+NPR + D+L
Sbjct: 121 DKKYAEIFFKEAKESEEKFYQILLDDIDEKRMKFRRKIQIVFQDPMSSLNPRMTVGDILT 180
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEY-VGRFPHMLSGGQRQRVAIARALILN 181
EP+L HG+ +TR EE + A +++K +EY + R+PH SGGQRQR+AIARA+ +N
Sbjct: 181 EPILFHGLAKTR---EEAVDMAKDLLKSVGLKEYHLERYPHQFSGGQRQRIAIARAISIN 237
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P ++ DEP + LDVS++A+++ L +L+E+ G TYL+I+HDL R+ + + +MYLGR
Sbjct: 238 PEIVILDEPTASLDVSVQAQVINLFLKLQEEKGFTYLFISHDLGLVRFISHEVGIMYLGR 297
Query: 242 IVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHP 301
IVEMG E+ DNPLHPYT+ALL+AVP P P+ + K + ++G VPS +N P GC FHP
Sbjct: 298 IVEMGNTDEIFDNPLHPYTQALLSAVPVPDPKVERTRKRIILRGGVPSPINRPTGCFFHP 357
Query: 302 RCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
RC Y K +C+ + P + E S HWV CH
Sbjct: 358 RCPY-KMPVCEKEYPVMKEISPGHWVACH 385
>emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related protein
[Thermoplasma acidophilum]
Length = 704
Score = 289 bits (732), Expect = 3e-77
Identities = 146/346 (42%), Positives = 223/346 (64%), Gaps = 28/346 (8%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+++V++L KYF I+ +L ++FVRAVD I+F + K ++ +VGESG GKTT GK
Sbjct: 349 MVEVKDLVKYFEIKESISKALFEREKRFVRAVDDITFAIRKGEILGIVGESGSGKTTLGK 408
Query: 65 LVVKLLEPTDGKI---YLEGQ-DVTQLRTKEEI--KAYRRRVQMIFQDPFSSMNPRFRIY 118
++ L PT GKI + G ++T ++ E+ + R+ QMIFQDP+ S+NP+ +Y
Sbjct: 409 TLLGLYSPTAGKITYSFSNGDVEITPTTSESELMRSSIRKETQMIFQDPYDSLNPKLTVY 468
Query: 119 DVLEEPLLIHGIGETRAEREELIYKALEMVKIT----------PPEEYVGRFPHMLSGGQ 168
D++ EP++ + E++++ LE++ + P E Y+ R+PH LSGG+
Sbjct: 469 DIVAEPIIARRYHKGNKEKDDIYKNPLEILNLVKIALAKASLKPVENYLFRYPHELSGGE 528
Query: 169 RQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTAR 228
RQRVA ARAL+LN FI+ADEP SMLDVSIRA + +MKE++ K G+T +YI+HD+++
Sbjct: 529 RQRVATARALVLNSEFIIADEPTSMLDVSIRASFMNMMKEIRSKEGITMVYISHDIASTY 588
Query: 229 YFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPI----PERKDVIKELPIK 284
Y +D I VMYLG+ VEMG A +I+ PLHPYT+AL+ A+P P P + D+I
Sbjct: 589 YMSDKILVMYLGKAVEMGSADAIINEPLHPYTKALIKAIPTPFSDWDPSKIDII------ 642
Query: 285 GEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
GE+ +A+N+P GCRF+ RC+Y ++ +C P ++ + +HW CH
Sbjct: 643 GEIGNAINVPKGCRFYNRCIY-RQDIC-KDNPPTVKGAEDHWYLCH 686
Score = 160 bits (400), Expect = 3e-38
Identities = 100/316 (31%), Positives = 162/316 (50%), Gaps = 27/316 (8%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTD---GKIYLEGQD------ 83
V A+ +SF++ + + +VGESG GK+T ++ LL G IYL+G +
Sbjct: 15 VHALSDVSFDLKQGRFLGIVGESGSGKSTLALSIMSLLPENAMMRGSIYLKGTEYISDVI 74
Query: 84 VTQLRTKEEIKAYR--------RRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRA 135
+ + K+ K + + M+FQ +S NP + I + E IH T
Sbjct: 75 INNAKKKKARKILEDNLRNIRWKNISMVFQGAMNSFNPVYTIRRQMFEVFKIH----TTL 130
Query: 136 EREELIYKALEMVKITPPE-EYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSML 194
+ +E+ K E +++ + +PH LSGG +QR IA AL L+P ++ADEP + L
Sbjct: 131 DNDEIEKKVEEALRMAGLNISVLDMYPHELSGGMKQRAVIAMALSLDPDIVIADEPTTGL 190
Query: 195 DVSIRAEILELMKELKEKMGV-TYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVID 253
DV +AEI+ +K+LKE + + + I+HDL AD + V+Y G++ E G +
Sbjct: 191 DVITQAEIISQLKKLKENGKIKSLILISHDLGVVSQLADEVMVLYAGKVFEYGEKSRIFQ 250
Query: 254 NPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDT 313
N +PYT L+ + P I K ++ +P G +P + I GC+F RC Y + +C
Sbjct: 251 NTANPYTYKLIGSYPS-IRNAKRYVEGIP--GSLPDPMKIGKGCKFADRC-YMARDVCRE 306
Query: 314 KEPKLIEYSHNHWVEC 329
+EP+LI+ NH+ C
Sbjct: 307 EEPELIKVEDNHYSAC 322
>sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1073370|pir||S47762 dipeptide transport protein dppF
- Escherichia coli >gi|466679|gb|AAB18518.1| (U00039)
was dppE [Escherichia coli] >gi|1789962|gb|AAC76565.1|
(AE000431) putative ATP-binding component of dipeptide
transport system [Escherichia coli K12]
Length = 334
Score = 287 bits (728), Expect = 9e-77
Identities = 144/335 (42%), Positives = 229/335 (67%), Gaps = 15/335 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+ +P+L+ +LKK++P+++G A P++ V+A+DG+SF + + + A+VGESGCGK+
Sbjct: 8 LQQPLLQAIDLKKHYPVKKGMFA-----PERLVKALDGVSFNLERGKTLAVVGESGCGKS 62
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T G+L+ + PT G++Y +GQD+ + + + K R+++Q++FQ+P+ S+NPR ++ +
Sbjct: 63 TLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQ-KLRRQKIQIVFQNPYGSLNPRKKVGQI 121
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMV-KITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
LEEPLLI+ T +E+ KAL M+ K+ E+ R+PHM SGGQRQR+AIAR L+
Sbjct: 122 LEEPLLIN----TSLSKEQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLM 177
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
L+P ++ADEPVS LDVS+RA++L LM +L++++G++Y++I+HDLS + AD + VMYL
Sbjct: 178 LDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL 237
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
GR VE G ++ +NP HPYT+ALL+A P P+ D + + + GE+PS +N PPGC F
Sbjct: 238 GRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPD--DRRERIKLSGELPSPLNPPPGCAF 295
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGE 334
+ RC + G C +P+L +Y V C V +
Sbjct: 296 NARC-RRRFGPCTQLQPQLKDYG-GQLVACFAVDQ 328
>gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia coli]
Length = 333
Score = 287 bits (727), Expect = 1e-76
Identities = 141/322 (43%), Positives = 225/322 (69%), Gaps = 14/322 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+ +P+L+ +LKK++P+++G A P++ V+A+DG+SF + + + A+VGESGCGK+
Sbjct: 8 LQQPLLQAIDLKKHYPVKKGMFA-----PERLVKALDGVSFNLERGKTLAVVGESGCGKS 62
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T G+L+ + PT G++Y +GQD+ + + + K R+++Q++FQ+P+ S+NPR ++ +
Sbjct: 63 TLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQ-KLRRQKIQIVFQNPYGSLNPRKKVGQI 121
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMV-KITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
LEEPLLI+ T +E+ KAL M+ K+ E+ R+PHM SGGQRQR+AIAR L+
Sbjct: 122 LEEPLLIN----TSLSKEQRREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLM 177
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
L+P ++ADEPVS LDVS+RA++L LM +L++++G++Y++I+HDLS + AD + VMYL
Sbjct: 178 LDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL 237
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
GR VE G ++ +NP HPYT+ALL+A P P+ D + + + GE+PS +N PPGC F
Sbjct: 238 GRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPD--DRRERIKLSGELPSPLNPPPGCAF 295
Query: 300 HPRCVYFKKGLCDTKEPKLIEY 321
+ RC + G C +P+L +Y
Sbjct: 296 NARC-RRRFGPCTQLQPQLKDY 316
>sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1074010|pir||E64188 dipeptide transport ATP-binding
protein dppF - Haemophilus influenzae (strain Rd KW20)
>gi|972898|gb|AAA95975.1| (U17295) DppF [Haemophilus
influenzae] >gi|1574111|gb|AAC22837.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Haemophilus influenzae Rd]
Length = 327
Score = 287 bits (726), Expect = 2e-76
Identities = 145/331 (43%), Positives = 224/331 (66%), Gaps = 16/331 (4%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+L LKKY+P+++G A +PQQ V+A+DG+SF++ + + A+VGESGCGK+T G
Sbjct: 10 PLLNAIGLKKYYPVKKGLFA----KPQQ-VKALDGVSFQLERGKTLAVVGESGCGKSTLG 64
Query: 64 KLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRR-VQMIFQDPFSSMNPRFRIYDVLE 122
+L+ + EPT G++Y +G + L E KA RR+ +Q++FQ+P++S+NPR +I +LE
Sbjct: 65 RLLTMIEEPTKGELYYKGHNF--LENDSETKALRRKKIQIVFQNPYASLNPRKKIGSILE 122
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
EPL+I+ + RE+++ M K+ E+ R+PHM SGGQRQR+AIAR L+L+P
Sbjct: 123 EPLIINTKLSAKERREKVLSM---MEKVGLRAEFYDRYPHMFSGGQRQRIAIARGLMLDP 179
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
+VADEPVS LDVS+RA++L LM +L++++G++Y++I+HDLS + AD + VMYLGR
Sbjct: 180 DVVVADEPVSALDVSVRAQVLNLMMDLQDELGLSYVFISHDLSVVEHIADEVMVMYLGRC 239
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPE-RKDVIKELPIKGEVPSAVNIPPGCRFHP 301
+E G +++ NP HPYT+ALL+A P P R++ IK + GE+PS +N P GC F+P
Sbjct: 240 IEKGTTEQIFSNPQHPYTKALLSATPRLSPNLRRERIK---LTGELPSPINPPKGCAFNP 296
Query: 302 RCVYFKKGLCDTKEPKLIEYSHNHWVECHRV 332
RC + C +P L +++ + C +
Sbjct: 297 RC-WKATEKCRENQPHLEQHTDGKLIACFHI 326
>emb|CAC05751.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 356
Score = 286 bits (725), Expect = 2e-76
Identities = 138/301 (45%), Positives = 203/301 (66%), Gaps = 6/301 (1%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
EPIL+V L K++P+ G L + V+AVDG+ F + + + +VGESGCGK+T
Sbjct: 6 EPILEVRGLVKHYPLTSGILFK---KQVGAVKAVDGVDFRLARGETLGIVGESGCGKSTV 62
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
K++V L PT G+I +G+D+T+L + +K+ RR +QM+FQDP++S+NPR + D++
Sbjct: 63 AKMLVNLERPTAGEIRYKGEDITRLSGRA-LKSVRRNIQMVFQDPYTSLNPRMTVGDIIG 121
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E IH + +R + L++V + P EY+ R+PH SGGQRQR+ IAR L L P
Sbjct: 122 EAYDIHPEVAPKGDRRRRVQDLLDVVGLNP--EYINRYPHQFSGGQRQRIGIARGLALRP 179
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
IVADEPVS LDVS++A+++ LM L+++ ++Y++I HDLS R+ +D + VMYLGRI
Sbjct: 180 EIIVADEPVSALDVSVQAQVINLMARLQDEFDLSYIFIAHDLSIVRHISDRVGVMYLGRI 239
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPR 302
VE G +E+ D+P HPYT+ALL+AVP P PE ++ + + + G+VPS NIP GCRF R
Sbjct: 240 VETGRDEEIYDHPTHPYTQALLSAVPVPDPEAREHRERIILSGDVPSPTNIPSGCRFRTR 299
Query: 303 C 303
C
Sbjct: 300 C 300
>gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding; DppF
[Halobacterium sp. NRC-1]
Length = 943
Score = 286 bits (724), Expect = 3e-76
Identities = 145/307 (47%), Positives = 207/307 (67%), Gaps = 10/307 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
EP+L L+K+F G+L S+ G Q+ V+AVDG+ +VY+ + LVGESGCGK+TT
Sbjct: 502 EPLLSSRGLEKHFSRADGWLDSMLGGDQEPVKAVDGVDLDVYEGETLGLVGESGCGKSTT 561
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+ +++L+EPTDG++ G DVT L +E++A R +QMIFQDP SS++PR I D +
Sbjct: 562 GRSILRLVEPTDGRVVFAGDDVTDLND-DELRATRTDMQMIFQDPLSSLDPRQSIGDTIL 620
Query: 123 EPLLIH------GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIAR 176
EPL IH G TR R + + ++ V + P + R+PH LSGGQRQRV IAR
Sbjct: 621 EPLQIHDLPANPGAQSTRQARRDRVIDLMDAVGLDPSQ--YDRYPHELSGGQRQRVGIAR 678
Query: 177 ALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAV 236
AL ++P FIVADEPVS LDVS++A+IL L+++L+++ +TYL+I HDLS R+ D IAV
Sbjct: 679 ALAVDPDFIVADEPVSALDVSVQAQILNLLEDLQDEFDLTYLFIAHDLSVVRHICDRIAV 738
Query: 237 MYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPG 296
MYLG+IVE ++ P HPYT++LL+++P+P P + ++G+VPS ++ P G
Sbjct: 739 MYLGKIVETAQTAQLFSTPKHPYTKSLLSSIPDPDP-LATTDDRIILEGDVPSPIDPPSG 797
Query: 297 CRFHPRC 303
CRF RC
Sbjct: 798 CRFRTRC 804
Score = 169 bits (423), Expect = 5e-41
Identities = 89/220 (40%), Positives = 127/220 (57%), Gaps = 23/220 (10%)
Query: 102 MIFQDPFSSMNPRFRIYDVLEEPLLIHGIGE--------------TRAEREELIYK---- 143
MIFQDP +S+NP + + + E L +H GE +R + +E +
Sbjct: 233 MIFQDPMTSLNPSLTVGEQVAESLRLHRYGEQPTDSWLNGLRAAISRGDTDEQVVADVVD 292
Query: 144 ALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEIL 203
L+ V I PE + +PH SGG RQRV IA AL P ++ADEP + LDV+I+A+IL
Sbjct: 293 VLDAVGIPEPETRLDEYPHEFSGGMRQRVLIAIALACRPRLLIADEPTTALDVTIQAQIL 352
Query: 204 ELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRAL 263
+ + +L+++ G++ L+ITHDL D +AVMY G IVE GP +E+ NP HPYT AL
Sbjct: 353 DRISDLQDEFGMSVLFITHDLGVVAETCDRVAVMYAGEIVEEGPVEEIFHNPSHPYTYAL 412
Query: 264 LAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRC 303
L ++P R D + PI+G VP +++P GC F RC
Sbjct: 413 LESIP-----RDDADRLHPIEGNVPDLIDLPSGCHFEARC 447
>sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TS
>gi|1486423|emb|CAA92401.1| (Z68203) OppF homologue
[Rhizobium sp.] >gi|2182649|gb|AAB91872.1| (AE000098)
Y4tS [Rhizobium sp. NGR234]
Length = 353
Score = 282 bits (714), Expect = 4e-75
Identities = 146/330 (44%), Positives = 214/330 (64%), Gaps = 11/330 (3%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M++ +LKVE+L K++PI G+ + VRAV+ +SF V + +VGESGCGK+
Sbjct: 1 MSDALLKVESLTKHYPIEAGWFKT----NVPVVRAVEDVSFTVQAGETLCVVGESGCGKS 56
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T +L+++L++PT G++ +EG D+ LR K E++A+RRR+QM+FQDP+SS+NPR +
Sbjct: 57 TLARLLMRLIDPTSGRVLVEGTDIAGLR-KNELRAWRRRMQMVFQDPYSSLNPRLTAGQI 115
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ EP+ +R +R+EL L V ++P E R+P +SGGQRQR+ IARAL L
Sbjct: 116 ITEPVENFEC-LSRRQRQELATDLLRKVGMSP--EMASRYPSEMSGGQRQRLGIARALAL 172
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P+ I+ADE VS LDVS++A+IL L+ +L+++ G+ ++I+HDL+ + +AVMYLG
Sbjct: 173 KPSLIIADEAVSALDVSVQAQILNLLMDLQQETGIALIFISHDLAVVEHIGHRVAVMYLG 232
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH 300
RIVE+ P + P+HPYT AL+AA P P P R + E+P++GEVPS VN P GC FH
Sbjct: 233 RIVELSPRDALFAKPVHPYTEALIAAAPVPDPARARL--EVPLEGEVPSPVNPPSGCAFH 290
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
PRC C + P L+ V CH
Sbjct: 291 PRCP-LAVDRCRAEVPPLVPMPDGRAVACH 319
>gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis]
>gi|2633501|emb|CAB13004.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 305
Score = 277 bits (701), Expect = 1e-73
Identities = 127/273 (46%), Positives = 200/273 (72%), Gaps = 13/273 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M E +L++++LK++F RG V+AVD +SF++YK + LVGESGCGK+
Sbjct: 1 MTEKLLEIKHLKQHFVTPRGT-----------VKAVDDLSFDIYKGETLGLVGESGCGKS 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TTG+ +++L E TDG++ G++V ++++++ + R++QMIFQDP++S+NPR + D+
Sbjct: 50 TTGRSIIRLYEATDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADI 109
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E L IH + +T+ ER + +++ LE V + +E+ R+PH SGGQRQR+ IARAL +
Sbjct: 110 IAEGLDIHKLAKTKKERMQRVHELLETVGLN--KEHANRYPHEFSGGQRQRIGIARALAV 167
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
+P FI+ADEP+S LDVSI+A+++ LMKEL+++ G+TYL+I HDLS +Y +D I VMY G
Sbjct: 168 DPEFIIADEPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFG 227
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPE 273
++VE+ PA E+ +NPLHPYT++LL+A+P P P+
Sbjct: 228 KLVELAPADELYENPLHPYTKSLLSAIPLPDPD 260
>sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|98478|pir||E38447 oligopeptide transport ATP-binding
protein oppF - Bacillus subtilis
>gi|143608|gb|AAA62692.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 308
Score = 276 bits (698), Expect = 3e-73
Identities = 126/273 (46%), Positives = 200/273 (73%), Gaps = 13/273 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+ E +L++++LK++F RG V+AVD +SF++YK + LVGESGCGK+
Sbjct: 4 LTEKLLEIKHLKQHFVTPRGT-----------VKAVDDLSFDIYKGETLGLVGESGCGKS 52
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TTG+ +++L E TDG++ G++V ++++++ + R++QMIFQDP++S+NPR + D+
Sbjct: 53 TTGRSIIRLYEATDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADI 112
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E L IH + +T+ ER + +++ LE V + +E+ R+PH SGGQRQR+ IARAL +
Sbjct: 113 IAEGLDIHKLAKTKKERMQRVHELLETVGLN--KEHANRYPHEFSGGQRQRIGIARALAV 170
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
+P FI+ADEP+S LDVSI+A+++ LMKEL+++ G+TYL+I HDLS +Y +D I VMY G
Sbjct: 171 DPEFIIADEPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFG 230
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPE 273
++VE+ PA E+ +NPLHPYT++LL+A+P P P+
Sbjct: 231 KLVELAPADELYENPLHPYTKSLLSAIPLPDPD 263
>emb|CAA39791.1| (X56347) OppF [Bacillus subtilis]
Length = 307
Score = 276 bits (698), Expect = 3e-73
Identities = 126/273 (46%), Positives = 200/273 (73%), Gaps = 13/273 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+ E +L++++LK++F RG V+AVD +SF++YK + LVGESGCGK+
Sbjct: 4 LTEKLLEIKHLKQHFVTPRGT-----------VKAVDDLSFDIYKGETLGLVGESGCGKS 52
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TTG+ +++L E TDG++ G++V ++++++ + R++QMIFQDP++S+NPR + D+
Sbjct: 53 TTGRSIIRLYEATDGEVLFNGENVHGRKSRKKLLEFNRKMQMIFQDPYASLNPRMTVADI 112
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E L IH + +T+ ER + +++ LE V + +E+ R+PH SGGQRQR+ IARAL +
Sbjct: 113 IAEGLDIHKLAKTKKERMQRVHELLETVGLN--KEHANRYPHEFSGGQRQRIGIARALAV 170
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
+P FI+ADEP+S LDVSI+A+++ LMKEL+++ G+TYL+I HDLS +Y +D I VMY G
Sbjct: 171 DPEFIIADEPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFG 230
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPE 273
++VE+ PA E+ +NPLHPYT++LL+A+P P P+
Sbjct: 231 KLVELAPADELYENPLHPYTKSLLSAIPLPDPD 263
>pir||B69856 oligopeptide transport ATP-binding protein homolog ykfD - Bacillus
subtilis >gi|2632021|emb|CAA05580.1| (AJ002571) YkfD
[Bacillus subtilis] >gi|2633654|emb|CAB13157.1| (Z99110)
similar to oligopeptide ABC transporter (permease)
[Bacillus subtilis]
Length = 327
Score = 275 bits (696), Expect = 5e-73
Identities = 132/300 (44%), Positives = 207/300 (69%), Gaps = 13/300 (4%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+L+V LK +F + ++ V+AVDG++F++ + + F LVGESGCGK+T G
Sbjct: 5 PLLEVSQLKMHFDAGK----------KRTVKAVDGVTFQIREGETFGLVGESGCGKSTLG 54
Query: 64 KLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEE 123
+++++L +PT+G + G ++ L KE+ A+ R++QMIFQDP++S+NPR + +++ E
Sbjct: 55 RVLMRLYQPTEGSVTYRGTNLHALSEKEQF-AFNRKLQMIFQDPYASLNPRMTVREIILE 113
Query: 124 PLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
P+ IH + T R ++ + LE V + P ++ R+PH SGGQRQR+ IARAL LNP
Sbjct: 114 PMEIHNLYNTHKARLSVVDELLEAVGLHP--DFGSRYPHEFSGGQRQRIGIARALSLNPE 171
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
FIVADEP+S LDVS++A+++ L+K L+++ G+T+L+I HDLS ++ +D I VMYLG ++
Sbjct: 172 FIVADEPISALDVSVQAQVVNLLKRLQKEKGLTFLFIAHDLSMVKHISDRIGVMYLGHMM 231
Query: 244 EMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRC 303
E+ + + PLHPYT+ALL+++P P PE +D + + +KGE+PS VN P GC F RC
Sbjct: 232 EITESGTLYREPLHPYTKALLSSIPIPDPELEDKRERILLKGELPSPVNPPSGCVFRTRC 291
>pir||C72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981011|gb|AAD35585.1|AE001726_19 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 384
Score = 275 bits (695), Expect = 7e-73
Identities = 157/393 (39%), Positives = 226/393 (56%), Gaps = 68/393 (17%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+ IL+VENL K+FPIR G + G +V+AVDG+SF + + + F LVGESGCGKT
Sbjct: 1 MSREILRVENLVKHFPIRAGVFKRIVG----WVKAVDGVSFSINEGETFGLVGESGCGKT 56
Query: 61 TTGKLVVK---------LLEPTDGKIY-----------------------------LEGQ 82
T G +++ +++ D Y LEG
Sbjct: 57 TIGMTLLRLYEPTSGRIIVDNEDTTYYFMPRSKAKKYIKQTYLSRFVNMKESDVEKLEGV 116
Query: 83 DVTQLRT--------------------KEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
D R E+ K +RR +Q++FQDP+SS+NPR R+ ++
Sbjct: 117 DREYARIFFEEAKGSPKKFMSILLDDLPEKRKKFRREMQIVFQDPYSSLNPRLRVKSIVG 176
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E ++ H I + E E+ I + LE V I P YV RFPH SGGQRQR+ IARAL L P
Sbjct: 177 EGIVTHRIARGK-EVEKRIKEILEDVGI--PSAYVYRFPHEFSGGQRQRIGIARALALEP 233
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
+VADE V+ LDVSIR++I+ LM++L+ + +TY++I+HDL+ ++ +D I VMYLG++
Sbjct: 234 KLVVADEAVAALDVSIRSQIINLMEDLQREHKLTYIFISHDLAVVKHISDRIGVMYLGKM 293
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPR 302
VE+ P K++ + PLHPYT AL++A+P P P +K + + +KG+VPS +N P GCRFH R
Sbjct: 294 VELAPKKDLFEKPLHPYTVALMSAIPVPDPTKKR--ERIILKGDVPSPINPPSGCRFHTR 351
Query: 303 CVYFKKGLCDTKEPKLIEYSHNHWVECHRVGEI 335
C K+ +C +EP E H+V CH GE+
Sbjct: 352 CPIAKE-ICSKEEPAFREVEEGHFVACHFPGEL 383
>dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 332
Score = 271 bits (685), Expect = 1e-71
Identities = 138/331 (41%), Positives = 206/331 (61%), Gaps = 11/331 (3%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M E +L+ + L K+F + GF + +RAVDG+ +Y + +VGESGCGK+
Sbjct: 1 MKEVLLEAKGLTKHFDVSEGFFKRKKA----VLRAVDGVDLTIYAGETLGIVGESGCGKS 56
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T G+L+++LLEPT G + G D L+ E ++ R +Q+IFQDPFSS+NPR + ++
Sbjct: 57 TLGQLLMRLLEPTRGTLSFAGSDFLALKG-EALRQKRSDIQIIFQDPFSSLNPRMTVREI 115
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVK-ITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+ EPL H + A+ +LI + E++ + Y R+PH SGGQRQR+ IARA+
Sbjct: 116 IGEPLKTHRL----AKGNDLIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIA 171
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
L P I+ DEPVS LDVSI+A+IL LM L+++ +T+L+I H L ++ +D +AVMYL
Sbjct: 172 LKPKLIICDEPVSALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYL 231
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
G++VE+ + P+HPY+ L+ AVP P P ++ K + ++G++PS V+ P GCRF
Sbjct: 232 GKVVELASKDALFAQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRF 291
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
HPRC Y + C +EP L E H+V CH
Sbjct: 292 HPRCPY-AQDKCTVQEPALTEKEPGHFVACH 321
>gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-binding; AppF
[Halobacterium sp. NRC-1]
Length = 440
Score = 270 bits (683), Expect = 2e-71
Identities = 144/325 (44%), Positives = 206/325 (63%), Gaps = 17/325 (5%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
AE +++V+ LKK++PI G L + G VRAVDG+SFEV + +VGESGCGK+T
Sbjct: 13 AESLMRVDGLKKHYPITEGVLRTEVGR----VRAVDGVSFEVRAGETLGIVGESGCGKST 68
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
+ V++L +PT G +Y +G+DVT +K +RR QMIFQ+P SS +PR + +
Sbjct: 69 VAESVLRLTDPTAGSVYFDGEDVTAY-DDTALKRFRREAQMIFQNPDSSFDPRMTTGESV 127
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
EPL IHG+G R+ R E+ LE V ++ E R+PH LSGGQ+QRVA+ARAL++N
Sbjct: 128 AEPLKIHGVGP-RSRRLEIARDLLERVGMSG--EDAARYPHELSGGQKQRVALARALVVN 184
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P IVADEPVS LDVS++AE+L L+ +++ + + L+I+HD+ R D +AVMYLG
Sbjct: 185 PRLIVADEPVSALDVSVQAEVLTLLNDIQAEFNLGVLFISHDMGVVREVCDRVAVMYLGE 244
Query: 242 IVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHP 301
IVEMG ++V ++P HPYTRALL ++P E + + ++GEVP + P GC FH
Sbjct: 245 IVEMGRTEDVFNDPEHPYTRALLRSIPTVGVESRGT--DAGLRGEVPPPSDPPTGCNFHT 302
Query: 302 RCVYFKKGLCDTKEPKLIEYSHNHW 326
RC + +P ++ HW
Sbjct: 303 RCP-------EVIQPDGYDFEQAHW 320
>gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis]
Length = 311
Score = 267 bits (676), Expect = 1e-70
Identities = 128/301 (42%), Positives = 210/301 (69%), Gaps = 20/301 (6%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +++V+N+K++F + G V+AV+ ISF++Y+ + F LVGESGCGK+TT
Sbjct: 6 EKLIEVKNVKQHFDVSGGV-----------VKAVNDISFDIYRGETFGLVGESGCGKSTT 54
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+ +++L + T G++ +G++V +++ E+K + R++QMIFQDP++S+NPR + D++
Sbjct: 55 GRTIIRLYDATAGEVLFDGENVHGKKSRAELKKFNRKMQMIFQDPYASLNPRMTVGDIIA 114
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E + IHG+ +++ ER + +++ L V + +E+ RFPH SGGQRQR+ IARAL + P
Sbjct: 115 EGIDIHGLAKSKKERMDRVHELLNTVGLN--KEHANRFPHEFSGGQRQRIGIARALAVEP 172
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
FI+ADEP+S LDVSI+A+++ L+K+L+++ G+TYL+I HDLS +Y +D I VMY G+I
Sbjct: 173 EFIIADEPISALDVSIQAQVVNLLKKLQKEKGLTYLFIAHDLSMVKYISDRIGVMYRGQI 232
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPE----RKDVI---KELPIKGEVPSAVNIPP 295
VE+ ++E+ NP+HPYT++LL+A+P P P+ RK ++ + EVP+ I P
Sbjct: 233 VELTTSEELYANPVHPYTKSLLSAIPLPDPDYERNRKRIVYDPSQHDYGREVPTMREIRP 292
Query: 296 G 296
G
Sbjct: 293 G 293
>pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655049|gb|AAF93782.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 266 bits (672), Expect = 3e-70
Identities = 139/331 (41%), Positives = 211/331 (62%), Gaps = 13/331 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +++ +NL K F I L Q +RA++ +SF++YK + ++VGESG GK+TT
Sbjct: 7 ELLVEGKNLVKDFAINSNALK------QPMMRAINDVSFKMYKSRGLSVVGESGSGKSTT 60
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
K++ K+ PT G I +G+D+ + +++++ YR VQM++QDPF S+NP I+ +
Sbjct: 61 AKMIAKMYAPTSGVIEYKGRDIQDIVSRDDLMHYREGVQMVWQDPFGSLNPTHTIFHHIA 120
Query: 123 EPLLIHG--IGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
PLLIH + E EE +Y+ LE V + PP+ ++PH LSGGQRQRV +AR + +
Sbjct: 121 RPLLIHKKVTPGNKKELEERVYELLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAV 180
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
++ADEP SMLDVSIRA +L LM+E+K + ++ LYITHD++TARY A+ +AVMY+G
Sbjct: 181 GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFERQMSLLYITHDIATARYIAEDLAVMYVG 240
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELP-IKGEVPSAVNIPPGCRF 299
+VE G E+I +P HPYT+ L++AVP+P +K + ++L KGE+P GC F
Sbjct: 241 HMVEWGDTDEIIHDPQHPYTKLLVSAVPDP---KKSIHEKLEGNKGEIPLWTPNSVGCPF 297
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
RC+Y C P++ + S NH+V C+
Sbjct: 298 AGRCLY-ASAKCREALPEVTQLSDNHFVRCY 327
>pir||F83082 probable ATP-binding component of ABC dipeptide transporter PA4506
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950746|gb|AAG07894.1|AE004864_6 (AE004864) probable
ATP-binding component of ABC dipeptide transporter
[Pseudomonas aeruginosa]
Length = 323
Score = 265 bits (671), Expect = 4e-70
Identities = 142/328 (43%), Positives = 214/328 (64%), Gaps = 13/328 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L +L +++ + RG +G Q VRA++G+SFE+ + A+VGESGCGK+T
Sbjct: 2 ETVLTARDLTRHYEVSRGLF---KGHAQ--VRALNGVSFELEAGKTLAVVGESGCGKSTL 56
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
+ + + EPT G + + GQ+V +K++ + RR VQM+FQ+P++S+NPR +I D L
Sbjct: 57 ARALTLIEEPTSGSLKIAGQEVKGA-SKDQRRQLRRDVQMVFQNPYASLNPRQKIGDQLA 115
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
EPLLI+ +R ER E + + + V + P E+ R+PHM SGGQRQR+A+ARA++L P
Sbjct: 116 EPLLIN-TALSREERREKVQQMMRQVGLRP--EHYQRYPHMFSGGQRQRIALARAMMLQP 172
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
+VADEP S LDVSI+A++L L +L+++ Y++I+H+L+ R+ AD + VMYLGR
Sbjct: 173 KVLVADEPTSALDVSIQAQVLNLFMDLQQQFRTAYVFISHNLAVVRHVADDVLVMYLGRP 232
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPR 302
EMGPA ++ +NPLHPYTRALL+A P P+ ++ I+GE+P+ +N P GC FH R
Sbjct: 233 AEMGPADKLYENPLHPYTRALLSATPAIHPD--PTKPKIRIQGELPNPLNPPEGCAFHKR 290
Query: 303 CVYFKKGLCDTKEPKLIEYSHNHWVECH 330
C Y + C ++ P+L V CH
Sbjct: 291 CPYATE-RCRSEVPEL-RLLDQRQVACH 316
>pir||F75202 dipeptide abc transporter, dipeptide-binding protein PAB0094 -
Pyrococcus abyssi (strain Orsay)
>gi|5457578|emb|CAB49069.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 323
Score = 263 bits (666), Expect = 2e-69
Identities = 140/334 (41%), Positives = 205/334 (60%), Gaps = 19/334 (5%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
EP++K+ENL F RG V+A+DG+SF++ K ++ AL+GE+GCGK+ T
Sbjct: 4 EPLVKIENLYIDFITDRGV-----------VKAIDGVSFDIRKGEILALIGETGCGKSVT 52
Query: 63 GKLVVKLLEPT---DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYD 119
K +++LL GKI +G+++ +L +E K + + MIFQDP +S+NP F I D
Sbjct: 53 AKAIMRLLPRNAIVKGKIIYKGRNLLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIED 112
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+ E +H + + +E++ K L+MVKI PE+ V +P LSGG RQRV IA L
Sbjct: 113 QMGEMFKVHKLPVVGSILDEIV-KLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLS 171
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
P+ ++ADEP + LDV+I+A+I+ LM EL+EK + L ITH+ AD + VMY
Sbjct: 172 AKPSLLIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYA 231
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
G++VE+ P +E+ DNPLHPYT+ LL A+P +++ I G VP+ +N P GCRF
Sbjct: 232 GQVVEIAPVEEIFDNPLHPYTQGLLRALPRGHKTERELEN---IPGRVPNLLNPPKGCRF 288
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
HPRC K+ +C ++PKLIE H+V CH G
Sbjct: 289 HPRCKKAKE-MCSKEKPKLIEVEKEHYVACHLYG 321
>pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981012|gb|AAD35586.1|AE001726_20 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 327
Score = 261 bits (660), Expect = 8e-69
Identities = 136/326 (41%), Positives = 197/326 (59%), Gaps = 19/326 (5%)
Query: 8 VENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVV 67
+ENLK YF G V+AVDG+SFEV + + +VGESG GK+ T ++
Sbjct: 1 MENLKTYFYTEDGV-----------VKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIM 49
Query: 68 KLLEPT----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEE 123
+LL+ DGKI +G+++ +L E K + + MIFQ+P ++NP F I D + E
Sbjct: 50 RLLDQNGKIVDGKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIME 109
Query: 124 PLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
+++H + E ++ L V I PE+ V +PH LSGG RQR IA AL P+
Sbjct: 110 AIILHQ-NVSEKEARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPS 168
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
++ADEP + LDV+I+A+ILELMKEL+++ G+ + ITHD+ +D +AVMY G++V
Sbjct: 169 LLIADEPTTALDVTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVV 228
Query: 244 EMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRC 303
E G K + P HPYT ALL ++P I ++ +K +P G VP +N PPGC+FHPRC
Sbjct: 229 EYGDVKTIFTEPKHPYTYALLESIPR-IDVEQERLKSIP--GNVPDPLNFPPGCKFHPRC 285
Query: 304 VYFKKGLCDTKEPKLIEYSHNHWVEC 329
+F+KG CD +EP+L + NH V C
Sbjct: 286 EFFEKGKCDVEEPELEDLDGNHKVRC 311
>pir||D75142 oligopeptide transport ATP-binding protein appf PAB0631 -
Pyrococcus abyssi (strain Orsay)
>gi|5458364|emb|CAB49853.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 261 bits (660), Expect = 8e-69
Identities = 150/330 (45%), Positives = 199/330 (59%), Gaps = 21/330 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+V+NL K F + L G Q VRAVDG+SF + + ++ +LVGESG GKTT GK
Sbjct: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDGVSFTINEGEIVSLVGESGSGKTTIGK 53
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
L+++LL PT G+I EG+D+ + KE Y R+VQ +FQDPF+S NP ++ V
Sbjct: 54 LILRLLTPTSGRILFEGKDIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVFHMI 113
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
+ R EREE+I KALE V + P E G++PH LSGGQ QR+ IARAL+L P
Sbjct: 114 FDSYFPDLGREEREEMIDKALEEVGLNP-SEVRGKYPHQLSGGQLQRILIARALLLKPRL 172
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
++ADE VSMLD S R ++L L+ E ++K G + L+ITHDL+ Y +D +MY G IVE
Sbjct: 173 LIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMYRGTIVE 232
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVP----SAVNIPPGCRFH 300
MG ++V NPLHPYT+ LL +VP D+ + KG P V GCR+
Sbjct: 233 MGETEKVFHNPLHPYTKMLLESVP-------DLNVKWEFKGIEPEKEEGKVWKIKGCRYA 285
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
PRC K +C P LIE NHWV CH
Sbjct: 286 PRCPK-AKDVCFKIRPTLIEVEKNHWVACH 314
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 259 bits (655), Expect = 3e-68
Identities = 144/323 (44%), Positives = 206/323 (63%), Gaps = 23/323 (7%)
Query: 1 MAEPIL-KVENLKKYFPIR-RGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCG 58
M++ IL K N+ KY+ + RG L SL EP +VRA+D +S E+ K +V +VGESG G
Sbjct: 1 MSDSILYKAININKYYLAKKRGILESLAREPPIYVRALDNVSVEIRKGEVLGVVGESGSG 60
Query: 59 KTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIY 118
KTT GK++ L +PT G + G +V I R+ + M+FQ+P +S+NPR ++
Sbjct: 61 KTTLGKVLATLEKPTGGNLIFMGMEVND----RNINHVRKHIHMVFQNPMTSINPRMKVK 116
Query: 119 DVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYV-GRFPHMLSGGQRQRVAIARA 177
D++ E + + +REE + K LE V + YV ++P LSGGQ QRVAIARA
Sbjct: 117 DIVREAM--------KEKREERVKKLLEEVGLD--YNYVKDKYPRELSGGQTQRVAIARA 166
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L P F++ DEP S LD S++A+IL L+ +L+++ +TYL+ITH+++ ARY +D + +M
Sbjct: 167 LAKEPDFLILDEPTSALDASVQAQILNLLVDLQKERKLTYLFITHNIAVARYISDRVIIM 226
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGC 297
Y G+IVE G KEVI P+HPYT++LL++VPE K +K P GEVPS +N P GC
Sbjct: 227 YAGKIVEEGNTKEVISEPMHPYTQSLLSSVPE---LGKKELK--PPSGEVPSLINPPSGC 281
Query: 298 RFHPRCVYFKKGLCDTKEPKLIE 320
RF+PRC F +C KEP L+E
Sbjct: 282 RFNPRCP-FAMSVCKEKEPPLVE 303
>pir||T35983 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464268|emb|CAB37471.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 359
Score = 257 bits (650), Expect = 1e-67
Identities = 143/338 (42%), Positives = 196/338 (57%), Gaps = 29/338 (8%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A P+L V L FP RRG A+ RAVDG+ ++ + ++ ALVGESGCGKTT
Sbjct: 29 APPLLSVRGLHVTFPGRRGAAAA---------RAVDGVDLDIRRGEIVALVGESGCGKTT 79
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
+ ++ L+ PT G++ +G + + +KAYRRR Q++ QDP S+NPR +YD++
Sbjct: 80 LARSLLGLVRPTGGRVTFDGAPLGY--SARALKAYRRRAQLVLQDPSGSLNPRHTVYDIV 137
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
E L IHG + + +AL + PPE + R+PH LSGGQRQRV IA AL+L
Sbjct: 138 AEGLRIHGHA---GDERTAVAEALSRAGLRPPERFFLRYPHELSGGQRQRVVIAGALVLQ 194
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P +VADEPV+ LD S+R EIL L+ L+ ++G++ L +THDL A AD +AVMYLGR
Sbjct: 195 PELLVADEPVASLDASVRGEILALLLRLRTELGLSALVVTHDLGLAWNIADRVAVMYLGR 254
Query: 242 IVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHP 301
IVE G ++V+ P HPYT+ALL+ +PE P V + GE P IP GCRFH
Sbjct: 255 IVETGAVEQVLTAPRHPYTQALLSVLPE-APGAPVV-----LTGEPPDPSYIPGGCRFHV 308
Query: 302 RCVYFKKG---------LCDTKEPKLIEYSHNHWVECH 330
RC G C +E +++ V CH
Sbjct: 309 RCPVLASGEAVRAGVADACRNEELEILRGGDESQVACH 346
>gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (dppF-1) [Sulfolobus
solfataricus]
Length = 325
Score = 257 bits (650), Expect = 1e-67
Identities = 135/325 (41%), Positives = 207/325 (63%), Gaps = 16/325 (4%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
++KVENLK YF + G + V+A+DG++ + ++++ +VGESG GKTT G+
Sbjct: 14 VVKVENLKVYFT-KGGMFTK-----KYVVKALDGVTLSIKEREIMGVVGESGSGKTTLGR 67
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
+ + L +PT G +Y++ + K ++K VQMI+QDP+SS++P R+YDVL P
Sbjct: 68 VTIGLQKPTSGNVYIKADNKEINVNKAKLKDISNYVQMIYQDPYSSIDPIMRVYDVLATP 127
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
L + + + EE A+ +V + P E + + LSGGQRQR++IARA+++NP +
Sbjct: 128 LKYKKMSDIDKKIEE----AMRLVDL--PLELLENRVYQLSGGQRQRLSIARAIVVNPKY 181
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
IVADEP +MLD S++ EIL+++K+ +E G +++YITH+L A+ +D I V+YLG+IVE
Sbjct: 182 IVADEPTTMLDASLKGEILKIIKDARESKGFSFMYITHELPIAKIISDRIIVLYLGKIVE 241
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCV 304
+G + E+I NPLHPYT+ L+ P P +D IKE+ IK ++ V GC F+PRC
Sbjct: 242 LGNSNEIIKNPLHPYTQGLIEVYPRIDPSLRDKIKEIKIKVDI---VRPDKGCVFYPRCP 298
Query: 305 YFKKGLCDTKEPKLIEYSHNHWVEC 329
F C +EP+L E S NH+V C
Sbjct: 299 -FAMPKCKEQEPELKEVSQNHYVAC 322
>pir||F71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256912|dbj|BAA29595.1|
(AP000002) 321aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 321
Score = 256 bits (646), Expect = 4e-67
Identities = 138/302 (45%), Positives = 188/302 (61%), Gaps = 13/302 (4%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEE 92
VRAVD +SFEV + ++ +L+GESG GKTT GKL+++LL+PT G+I G+D+ ++
Sbjct: 24 VRAVDDVSFEVGEGEIVSLIGESGSGKTTIGKLILRLLKPTSGRILFRGEDIWSFDREKL 83
Query: 93 IKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITP 152
+ Y + VQ +FQDPF+S NP ++ V + G EREELI ++LE V + P
Sbjct: 84 RRYYYKNVQAVFQDPFASFNPLHKVDRVFDLVFRNFLRGVAPGEREELIKRSLESVGLNP 143
Query: 153 PEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEK 212
E +G++PH LSGGQ QR+ IARAL++ P+ ++ADE VSMLD S R +IL L+ E ++K
Sbjct: 144 GE-VLGKYPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRIDILNLLGEFRDK 202
Query: 213 MGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIP 272
G + ++ITHDL+ Y +D I +MY GRIVE G A+ V NPLHPYTR LL +VP
Sbjct: 203 FGTSVIFITHDLALGYYISDKIVIMYRGRIVEWGDAERVFGNPLHPYTRMLLESVP---- 258
Query: 273 ERKDVIKELPIKGEVP----SAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVE 328
D+ KG P V GCRF PRC Y +K C K P+ IE NH V
Sbjct: 259 ---DLSVRWEFKGIEPEREEERVYEIKGCRFAPRCPYARKE-CYEKPPQTIEIEKNHHVA 314
Query: 329 CH 330
C+
Sbjct: 315 CY 316
>gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola]
Length = 385
Score = 253 bits (640), Expect = 2e-66
Identities = 126/302 (41%), Positives = 197/302 (64%), Gaps = 5/302 (1%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEE 92
V A DGI +++ + LVGESGCGK+T G+ ++KL +PT G+I+ EG+++T T +
Sbjct: 85 VIANDGIDLVIHEGETVGLVGESGCGKSTLGRTILKLYKPTAGEIFFEGENITNY-TVTQ 143
Query: 93 IKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITP 152
+ R+++Q+IFQDP+SS+NP+ + ++ E LL HG+ + + E K E++
Sbjct: 144 MMPLRKKMQIIFQDPYSSLNPKMTVGQIIGEALLEHGMFKKKDPAYEKYVK--EIMNTCG 201
Query: 153 PEEY-VGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKE 211
+Y + R+PH SGGQRQR+ IARAL L P FIV DE VS LDVSI+++I+ L+ +L++
Sbjct: 202 LADYMIYRYPHEFSGGQRQRIGIARALALKPKFIVCDEAVSALDVSIQSQIINLLNDLQK 261
Query: 212 KMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPI 271
+ ++YL+I+HDLS ++ +D I VMYLG +VE +E+ NPLHPYT+ LL+A+PE
Sbjct: 262 EFNLSYLFISHDLSVVKHISDRIGVMYLGNMVEFTDKREMYANPLHPYTKVLLSAIPETD 321
Query: 272 PERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHR 331
++ + + ++G++PS + P GC+FH RC K +C + P+ E H+V CH
Sbjct: 322 LQKMRTKRRILLEGDIPSNIITPTGCKFHTRCP-IAKDICKREIPQFKEEKPGHFVACHF 380
Query: 332 VG 333
G
Sbjct: 381 SG 382
>gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocytogenes]
Length = 325
Score = 252 bits (636), Expect = 5e-66
Identities = 133/338 (39%), Positives = 209/338 (61%), Gaps = 39/338 (11%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L++ NLK+YF +G + VRAVD ISF++YK + LVGESGCGK+TT
Sbjct: 6 EKLLEIHNLKQYFN---------KGTASE-VRAVDDISFDIYKGETLGLVGESGCGKSTT 55
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+ +++L + T G++ G+DV ++++E+ +RR++QMIFQDP++S+NPR ++ D++
Sbjct: 56 GRTIIRLYDATGGEVIYNGKDVHARKSRKEMLEFRRKMQMIFQDPYASLNPRVKVKDIIA 115
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E + IHG+ +T E + +Y LE V ++ +E+ GR+PH SGGQRQR+ +P
Sbjct: 116 EGIRIHGLAKTPEETNKQVYDLLETVGLS--KEHAGRYPHEFSGGQRQRIGYRSCACCSP 173
Query: 183 TFIVADEPVS---MLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
FI+ADEP+S LDVSI+A+++ L+++L+++ +TYL+I HDLS +Y +D I VMY
Sbjct: 174 EFIIADEPISALDFLDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMVKYISDRIGVMYF 233
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIP--ERKDVIKELPIKGEVPSAVNIPPGC 297
G++V++ A ++ PLHPYT +LL+A+P P P ER V K
Sbjct: 234 GKLVKLAFANDLYHAPLHPYTESLLSAIPLPDPNYERTRVRK------------------ 275
Query: 298 RFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGEI 335
+ P +K G E K+ E + H+V C V E+
Sbjct: 276 TYDPTSHNYKDG----DEIKMREIAPGHFVYCSEVEEV 309
>pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf) PAB1347 -
Pyrococcus abyssi (strain Orsay)
>gi|5458955|emb|CAB50442.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 319
Score = 252 bits (636), Expect = 5e-66
Identities = 138/333 (41%), Positives = 200/333 (59%), Gaps = 21/333 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+V+NL K F + L G Q VRAVD ++F + + ++ +LVGESG GKTT GK
Sbjct: 2 LLEVQNLTKIFT------SGLIGGYQ--VRAVDNVTFSIKEGEIVSLVGESGSGKTTIGK 53
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
L+++L++PT GKI +G+D+ + + Y + VQ +FQDPF+S NP +++ V +
Sbjct: 54 LILRLIKPTSGKILFKGEDIWSFDKDKLMNYYYKNVQAVFQDPFASFNPLYKVDRVFDLV 113
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
+ E++EL+ +ALE V + P E +G+FPH LSGGQ QR+ IARAL++ P+
Sbjct: 114 FRTFLKNVSDVEKDELVRRALESVGLNP-REILGKFPHQLSGGQLQRILIARALLVEPSL 172
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
++ADE VSMLD S R ++L L+ E ++ G + ++ITHDL+ Y +D I +MY G IVE
Sbjct: 173 LIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGSIVE 232
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVP----SAVNIPPGCRFH 300
G ++V DNPLHPYT+ LL +VP D+ + KG P V GC+F
Sbjct: 233 WGDTEKVFDNPLHPYTKMLLESVP-------DLNVKWEFKGIEPEREEGKVWELKGCKFA 285
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
PRC K C P+ +E NHWV CH G
Sbjct: 286 PRC-SLAKDKCWKIRPEPVEVEKNHWVACHLYG 317
>pir||A72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981772|gb|AAD36294.1|AE001778_15 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 315
Score = 250 bits (632), Expect = 2e-65
Identities = 139/331 (41%), Positives = 212/331 (63%), Gaps = 19/331 (5%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+LKV+NL K FP+ GF R ++AVD +SFE+ + ++ +L+GESG GKTT GK
Sbjct: 3 LLKVQNLTKEFPL--GFFGKER------LKAVDDVSFEIERSRIVSLIGESGSGKTTVGK 54
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
L++KL+ P+ G+I L G+D+TQ++ + E++ Y R+VQ +FQDPFSS NP ++I VL+
Sbjct: 55 LILKLIRPSSGQILLNGRDITQIKGR-ELREYYRKVQGVFQDPFSSFNPIYKIDRVLDMV 113
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
+ER + + + V + P E +G++PH LSGGQ QR+ IAR L+LN
Sbjct: 114 FEEFFPDTPASERRTKMEEVIASVGMN-PREILGKYPHQLSGGQLQRILIARTLLLNVEL 172
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
++ADE +SMLD S R +IL L+ +L+E+ G++ ++ITHDLS Y +D +MY G IVE
Sbjct: 173 LIADEIISMLDASTRVDILNLLGDLRER-GMSVIFITHDLSLGYYISDETFIMYRGNIVE 231
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKE-LPIKGEVPSAVNIPPGCRFHPRC 303
MG ++V NP+HPYT+ LL +VPE I + D+ K +P E+ S+ N P C+++ RC
Sbjct: 232 MGDTEKVFHNPIHPYTKMLLESVPE-IDRKWDLSKRFIP---ELVSSSNAP--CKYYDRC 285
Query: 304 VYFKKGLCDTKEPKLIEYSHNHWVECHRVGE 334
+ C ++P ++E NH V C + G+
Sbjct: 286 P-IRDERCLVQKPAMVEVEENHKVLCLKAGD 315
>emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding protein appF related
protein [Thermoplasma acidophilum]
Length = 314
Score = 250 bits (631), Expect = 2e-65
Identities = 136/326 (41%), Positives = 203/326 (61%), Gaps = 20/326 (6%)
Query: 5 ILKVENLKKYFPI-RRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
I ++N+KKY+ +RG + +L P+ +VRA+D +S + V +VGESG GK+T G
Sbjct: 4 IYSLKNVKKYYLAQKRGLIDALVKVPKIYVRALDDVSISIMDGNVIGVVGESGSGKSTMG 63
Query: 64 KLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEE 123
K++V L PTDG++Y +G VT K E R++V M+FQ+P +S+NP+ ++ D++ E
Sbjct: 64 KVMVTLETPTDGELYFKGTRVT----KSEYPKIRKQVDMVFQNPATSLNPKMKVKDIVSE 119
Query: 124 PLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
PL G + A +E ++ L +E + LSGGQ QRVAIARAL+ P
Sbjct: 120 PL---GHFDEGAIKEVILKVGLSY------DEVKDKQSRELSGGQVQRVAIARALMKKPE 170
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
+V DEP S LD SI+A++L L+ +L+ + +TY++ITH++ A+Y +D+I V+Y G+IV
Sbjct: 171 LLVLDEPTSALDESIQAQVLNLLVDLQTEYKMTYIFITHNILVAKYISDYIVVLYAGKIV 230
Query: 244 EMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRC 303
E GP EV+ PLHPYT+ LL++VP DV P G+VPS +N+P GCRF+PRC
Sbjct: 231 EYGPTSEVLSKPLHPYTQLLLSSVP-----TVDVKDVKPPVGDVPSLINLPQGCRFNPRC 285
Query: 304 VYFKKGLCDTKEPKLIEYSHNHWVEC 329
+ + C +EP LI N+ V C
Sbjct: 286 PFVME-KCRKEEPPLISQGQNYQVAC 310
>sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|7442535|pir||B64872 oligopeptide transport
ATP-binding protein oppF - Escherichia coli
>gi|1742036|dbj|BAA14779.1| (D90763) Oligopeptide
transport ATP-binding protein OppF. [Escherichia coli]
>gi|1787500|gb|AAC74329.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 334
Score = 249 bits (630), Expect = 3e-65
Identities = 132/328 (40%), Positives = 209/328 (63%), Gaps = 7/328 (2%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L++ +LK +F I+ G +P + ++AVDG++ +Y+ + +VGESGCGK+T +
Sbjct: 11 LLEIADLKVHFEIKDG--KQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFAR 68
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
++ L++ TDG + G+++ ++ +E +A R +QMIFQDP +S+NPR I +++ EP
Sbjct: 69 AIIGLVKATDGHVAWLGKELLGMKP-DEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEP 127
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
L + +R E E + KA+ M+K+ + R+PH SGGQ QR+ IARALIL P
Sbjct: 128 LRTYHPKMSRQEVRERV-KAM-MLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL 185
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
I+ DEPVS LDVSI+A+++ L+++L+ +MG++ ++I HDL+ ++ +D + VMYLG VE
Sbjct: 186 IICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 245
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCV 304
+G EV NPLHPYTRAL++AVP P P+ + ++GE+PS +N P GC F RC
Sbjct: 246 LGTYDEVYHNPLHPYTRALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSGCVFRTRCP 305
Query: 305 YFKKGLCDTKEPKLIEYSHNHWVECHRV 332
T+ ++E S H V C +V
Sbjct: 306 IAGPECAKTR--PVLEGSFRHSVSCLKV 331
>pir||C72720 probable oligopeptide transport ATP-binding protein oppF APE0300 -
Aeropyrum pernix (strain K1) >gi|5103939|dbj|BAA79255.1|
(AP000059) 420aa long hypothetical oligopeptide
transport ATP-binding protein oppF [Aeropyrum pernix]
Length = 420
Score = 247 bits (624), Expect = 1e-64
Identities = 136/340 (40%), Positives = 199/340 (58%), Gaps = 41/340 (12%)
Query: 6 LKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKL 65
L + +++ YFPI +L + G +V+AVDG+S + K ++ +VGESG GKTT K
Sbjct: 5 LALHDVRVYFPITTFYLKKVIG----YVKAVDGVSLSLKKGEILGVVGESGSGKTTLAKT 60
Query: 66 VVKLLEPTDGKIYL-----------------------EGQDVTQLR-----------TKE 91
++ L P G +++ + +D+ + R +
Sbjct: 61 IIGLHRPFTGHVFIDIDKGELEEAVSIYEALKRGENVQREDIKRYRKIIKTHDPYYMDRS 120
Query: 92 EIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKIT 151
K +RR+VQM+ QDP+SS+NPR ++ +++ EP+ +HGI ++ + + + LE V +
Sbjct: 121 NYKKFRRKVQMVQQDPYSSLNPRMKVGEIIGEPVRVHGIEKSSEGVKRRVIEVLEAVGL- 179
Query: 152 PPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKE 211
+E+ R+P+ LSGGQRQRVAIARAL LNP +V DEP S LDVSI+A+IL L++EL +
Sbjct: 180 -GKEFADRYPYELSGGQRQRVAIARALALNPKILVLDEPTSALDVSIQAQILRLLRELWK 238
Query: 212 KMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPI 271
K G+TYL ITHD+S RY + + VMY G+I+E P + NPLHPYT+ LL+AVP P
Sbjct: 239 KYGLTYLLITHDISVVRYMSSSVVVMYSGKIMESAPKHILFTNPLHPYTKLLLSAVPIPD 298
Query: 272 PERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLC 311
P R IKE GE P+ P GCRF RC + +C
Sbjct: 299 P-RSRRIKEFKDIGEPPNPAKPPVGCRFVTRCPIASREIC 337
>gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-binding; YkfD
[Halobacterium sp. NRC-1]
Length = 445
Score = 247 bits (624), Expect = 1e-64
Identities = 129/302 (42%), Positives = 197/302 (64%), Gaps = 13/302 (4%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
++P+++V +LKK++ G G P V+AVDG++FE+ + + LVGESG GKTT
Sbjct: 16 SQPLVEVTDLKKHY----GDGGRFSGPP---VKAVDGVNFEIQEGETLGLVGESGSGKTT 68
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
G+ +++L T+G + +G+D+T+L T ++K +R+ Q++FQDP SS+N R I +++
Sbjct: 69 LGRTLIQLETATEGTVSFDGRDITKL-TGSDLKQWRKNAQIVFQDPDSSLNDRMTIGEIV 127
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
EPL H + AER + + + L V + Y R+PH SGGQRQR+ IARAL L
Sbjct: 128 REPLDAHD-WNSPAERRDRVKELLSSVGLQADHYY--RYPHQFSGGQRQRIGIARALALE 184
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P F+V DEPVS LD S++A+IL L+++L+++ G+TYL+I HDLS R+ D +AVMYLG+
Sbjct: 185 PEFMVLDEPVSALDASVQAKILNLLEDLQDEFGLTYLFIAHDLSVVRHICDRVAVMYLGK 244
Query: 242 IVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHP 301
I+E+G +E+ + +PYTR+LL+A+P P P + + G PS N P GC+F
Sbjct: 245 IMEIGETEELYADAKNPYTRSLLSAIPRPDPTIDR--NRITLPGAPPSPRNPPAGCQFST 302
Query: 302 RC 303
RC
Sbjct: 303 RC 304
>sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|72454|pir||QREBOF oligopeptide transport protein
oppF - Salmonella typhimurium >gi|47806|emb|CAA29043.1|
(X05491) Opp F (AA1-334) [Salmonella typhimurium]
Length = 334
Score = 247 bits (623), Expect = 2e-64
Identities = 129/328 (39%), Positives = 209/328 (63%), Gaps = 7/328 (2%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L++ +LK +F I+ G +P + ++AVDG++ +Y+ + +VGESGCGK+T +
Sbjct: 11 LLEIADLKVHFDIKEG--KQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFAR 68
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
++ L++ TDGK+ G+D+ ++ +E + R +QMIFQDP +S+NPR I +++ EP
Sbjct: 69 AIIGLVKATDGKVAWLGKDLLGMKA-DEWREVRSDIQMIFQDPLASLNPRMTIGEIIAEP 127
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
L + +R + + + KA+ M+K+ + R+PH SGGQ QR+ IARALIL P
Sbjct: 128 LRTYHPKLSRQDVRDRV-KAM-MLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL 185
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
I+ D+ VS LDVSI+A+++ L+++L+ +MG++ ++I HDL+ ++ +D + VMYLG VE
Sbjct: 186 IICDDAVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 245
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCV 304
+G EV NPLHPYT+AL++AVP P P+ + K ++GE+PS +N P GC F RC
Sbjct: 246 LGTYDEVYHNPLHPYTKALMSAVPIPDPDLERNKKIQLLEGELPSPINPPSGCVFRTRCP 305
Query: 305 YFKKGLCDTKEPKLIEYSHNHWVECHRV 332
T+ ++E S H V C +V
Sbjct: 306 IAGPECAQTR--PVLEGSFRHAVSCLKV 331
>pir||C72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981605|gb|AAD36139.1|AE001766_5 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 246 bits (622), Expect = 2e-64
Identities = 135/338 (39%), Positives = 201/338 (58%), Gaps = 25/338 (7%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+++NL+ YF G V+AVDG+SFE+ + + +VGESGCGK+ T +
Sbjct: 4 LLQIKNLRTYFFTDEGV-----------VKAVDGVSFEIEEGRTLGVVGESGCGKSVTAR 52
Query: 65 LVVKLLEPTDGKIY-------LEGQDVTQLR-TKEEIKAYR-RRVQMIFQDPFSSMNPRF 115
++KLL T G+I ++GQ V ++ +KEEI+ R R + MIFQ+P ++ +P +
Sbjct: 53 SIIKLLS-TAGRIVSGEILYNMDGQMVDLVKFSKEEIRKVRGRHIAMIFQEPMAAFSPVY 111
Query: 116 RIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIA 175
I D + E ++ H G T+ E E + L V I PE+ + +P SGG RQR IA
Sbjct: 112 TIGDQITEGMIYH-FGITKQEARERAVELLRRVGIPKPEKMIDSYPFEYSGGMRQRAMIA 170
Query: 176 RALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIA 235
AL NP ++ADEP + LDV+I+A++L+L+K+L+++ + + ITH++ AD +
Sbjct: 171 MALSCNPRLLIADEPTTALDVTIQAQVLDLLKDLQQEYKMAIMMITHNMGVVAEMADHVV 230
Query: 236 VMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPP 295
VMYLGR+VE P +E+ NP HPYT LL ++P K V + I+G+VP N+P
Sbjct: 231 VMYLGRVVESAPVEELFYNPKHPYTSLLLRSIP---VVGKRVERLEVIEGDVPDPRNMPK 287
Query: 296 GCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
GCRFHPRC Y KG+CD +EP +E H V C G
Sbjct: 288 GCRFHPRCPYMMKGICDEREPVEVEVGPEHRVSCFLYG 325
>dbj|BAA03322.1| (D14438) ATP-binding protein [Synechococcus elongatus]
Length = 531
Score = 246 bits (621), Expect = 3e-64
Identities = 126/265 (47%), Positives = 185/265 (69%), Gaps = 8/265 (3%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A +L+VENL++++ + G+L +PQ +RAVDG+ + + + LVGESGCGK+T
Sbjct: 272 APELLRVENLQRHYRLG-GWL-----QPQTTIRAVDGVDLTLRRGETLGLVGESGCGKST 325
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
+L+++L+ G + G+ +TQL + +++ RR +QMIFQDP + +NP+ + L
Sbjct: 326 LSRLILQLIPANAGDVVFLGRSLTQL-SAAQLRRTRRDLQMIFQDPHACLNPKMTVAQNL 384
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
EPLLIH + RA +E + + L V++TP E Y+ R+PH LSGGQRQRVAIARALI +
Sbjct: 385 LEPLLIHRLMAKRAAQER-VREMLMQVELTPAEAYLHRYPHALSGGQRQRVAIARALITH 443
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P ++ DEPVSMLD I+A++L LM+ELKE++ +TYL+ITHDL+ AR F D +AVMY G+
Sbjct: 444 PQLVICDEPVSMLDAHIQAQVLALMQELKEQLQLTYLFITHDLAIARRFCDRVAVMYRGK 503
Query: 242 IVEMGPAKEVIDNPLHPYTRALLAA 266
IVE+ P ++ +P HPYT+ LLAA
Sbjct: 504 IVELAPTAQLFAHPQHPYTQKLLAA 528
Score = 194 bits (488), Expect = 1e-48
Identities = 109/251 (43%), Positives = 155/251 (61%), Gaps = 7/251 (2%)
Query: 36 VDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTD---GKIYLEGQDVTQLRTKEE 92
VDG+SF V + F LVG SGCGK+T GK +++LL P G+I L+GQ + L +
Sbjct: 27 VDGVSFCVAAGERFGLVGASGCGKSTIGKAILRLLPPGSQIFGQIALQGQSLLGLSASQL 86
Query: 93 IKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITP 152
+ ++ ++FQDP + +NP IYD +E L H +R +R + I + LE VKI
Sbjct: 87 QRLRGEQIGLVFQDPMTRLNPLMSIYDHCDELLRSHWFSWSRPQRRQRIIEVLERVKI-- 144
Query: 153 PEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEK 212
P + ++PH LSGG RQRVAIA AL+LNP I+ADEP + LDV++ AEILE + L ++
Sbjct: 145 PANRLHQYPHELSGGMRQRVAIALALLLNPPLIIADEPTTALDVTVAAEILEELTRLCQQ 204
Query: 213 MGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAA--VPEP 270
L I+HDL+ + D +AVM+ G+I+E+G A +V+ P HPYT++LLAA + P
Sbjct: 205 EQRGLLLISHDLALMAKYCDRLAVMHQGKIMELGAAHQVLQRPQHPYTQSLLAATQLTSP 264
Query: 271 IPERKDVIKEL 281
P D EL
Sbjct: 265 QPPPLDTAPEL 275
>pir||G75026 oligopeptide transport ATP-binding protein appd. PAB1196 -
Pyrococcus abyssi (strain Orsay)
>gi|5459167|emb|CAB50653.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPD. [Pyrococcus abyssi]
Length = 319
Score = 246 bits (621), Expect = 3e-64
Identities = 138/334 (41%), Positives = 206/334 (61%), Gaps = 23/334 (6%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
MA+ IL+V+NLK Y+ RG V+AVD ++F++ K +V L GESGCGK+
Sbjct: 1 MAKKILEVKNLKMYYFTSRGP-----------VKAVDDVTFDLEKGEVLGLAGESGCGKS 49
Query: 61 TTGKLVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRF 115
+ G ++ + +P G I ++G+++ L K R +++ MIFQ +++NP +
Sbjct: 50 SIGFTLMGMPQPPGRIVSGSIKIDGREIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVY 109
Query: 116 RIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIA 175
+ + EPL+ H G +R + + K LE+V + P E V R+PH LSGG +QRV IA
Sbjct: 110 TVGYQMIEPLIYHR-GMSREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIA 166
Query: 176 RALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIA 235
ALIL P ++ADEP + LDV ++A+I+ LMK LK+K+G++ ++ITHDLS +D IA
Sbjct: 167 TALILEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIA 226
Query: 236 VMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPP 295
+MY G+IVE+GP+++V P HPYT+ LLAA+P +DV K I G P+ +N P
Sbjct: 227 IMYAGKIVEIGPSEKVYYEPAHPYTQKLLAAIPR---LHEDVEKLEFIPGSPPNLLNPPS 283
Query: 296 GCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
GCRFHPRC Y C +EPK++E +H+ C
Sbjct: 284 GCRFHPRCPY-AMDRCKEEEPKMVEVDKDHYAAC 316
>pir||F70141 probable oligopeptide transport ATP-binding protein oppF - Lyme
disease spirochete >gi|2281463|gb|AAC46288.1| (AF000366)
oligopeptide permease homolog F [Borrelia burgdorferi]
>gi|2688242|gb|AAC66721.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppF) [Borrelia
burgdorferi]
Length = 323
Score = 243 bits (615), Expect = 2e-63
Identities = 139/337 (41%), Positives = 210/337 (62%), Gaps = 25/337 (7%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E ILKVENL + F FL + +Q V AV+ +SFEV K + LVGESGCGK+TT
Sbjct: 6 EIILKVENLMQTFTTGEDFLF---WKNKQKVNAVNNVSFEVEKNKTLGLVGESGCGKSTT 62
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
+ +++L PT G IY G+++T+L KE +K ++ +QM+FQDP +S++PR I +++
Sbjct: 63 LRSIMQLYTPTSGNIYFNGKNITKLSKKELLKT-KKDMQMVFQDPHTSLDPRMTIKEIIA 121
Query: 123 EPLLIHG----IGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
EPL I+ + +T+ E E+ + + ++V + + + R+PH SGGQRQR+ IARAL
Sbjct: 122 EPLEIYNENKILPKTKQEIEQRVNELTDIVGLH--KSMLTRYPHEFSGGQRQRIGIARAL 179
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
LNP ++ DE VS LDVSIRA+IL L+K L+++ ++YL+I+HDL+ +Y +D IAVMY
Sbjct: 180 ALNPKLLLLDEAVSALDVSIRAQILNLLKALQKEFNLSYLFISHDLAVVKYMSDKIAVMY 239
Query: 239 LGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCR 298
LG I+E+ P + + NP+HPYT+ L+A++PE PE++ K IK + + NI
Sbjct: 240 LGVILELAPRETLFSNPIHPYTKMLIASIPEINPEKR---KNKNIKLDEQTLANIR---- 292
Query: 299 FHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGEI 335
K L PKL E +H+V + E+
Sbjct: 293 --------KIHLSTQVHPKLEEVEKDHFVSKYLFDEM 321
>pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC1095 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655564|gb|AAF94254.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 336
Score = 243 bits (615), Expect = 2e-63
Identities = 125/299 (41%), Positives = 197/299 (65%), Gaps = 9/299 (3%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEE 92
++AVDG++ +Y+ + +VGESGCGK+T + ++ L++ T G++ GQD+T+++ +
Sbjct: 40 LKAVDGVNVRLYEGETLGVVGESGCGKSTFARAIIGLVQATHGEVVWLGQDLTRMQEVKR 99
Query: 93 IKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITP 152
+A R+++QMIFQDP +S+NPR + D++ EPL ++ E ++ + + + V + P
Sbjct: 100 -RATRKQIQMIFQDPLASLNPRMTVGDIIAEPLQTFYPELSKQEVKDRVKEMMAKVGLLP 158
Query: 153 PEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEK 212
+ R+PH SGGQ QR+ IARALIL P I+ DEPVS LDVSI+A+++ L+KEL+++
Sbjct: 159 --NVINRYPHEFSGGQCQRIGIARALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKE 216
Query: 213 MGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIP 272
+G++ ++I HDLS ++ +D + VMYLG VE+G +KE+ NP HPYT+AL++AVP P P
Sbjct: 217 LGLSLVFIAHDLSVVKHISDRVLVMYLGNAVELGVSKELFANPKHPYTKALMSAVPIPDP 276
Query: 273 --ERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
ER I+ L +G++PS +N P GC F RC TK +I+ S H V C
Sbjct: 277 NIERNKTIQML--EGDLPSPMNPPSGCVFRTRCPQATAECAKTK--PVIKGSDIHSVSC 331
>pir||C72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980563|gb|AAD35169.1|AE001694_5 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 320
Score = 243 bits (614), Expect = 2e-63
Identities = 131/302 (43%), Positives = 196/302 (64%), Gaps = 13/302 (4%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+L+++NL K F I F + + AVD ++F++ + ++F L GESGCGKTTT
Sbjct: 2 PLLEIKNLTKIFTIGSIFSRTR-------IVAVDNVNFDINEAEIFTLAGESGCGKTTTA 54
Query: 64 KLVVKLLEPTDGKIYLEGQDVTQLRTKE-EIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
K+++ EPT G+I +G+ + ++ E E + + +Q +FQ+PFS+ NP ++
Sbjct: 55 KIILGFEEPTSGEIIYKGRKIDRVHQNEKERRELLKEIQAVFQNPFSTFNPLRKVDRYFY 114
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E L GI +T+ + EE+I + L V I+ EE+ ++P SGGQ QR++IARAL+ NP
Sbjct: 115 ETLFNLGIADTKKKAEEIIKEKLSAVGISF-EEFSEKYPSEFSGGQLQRISIARALLTNP 173
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
+ +VADEPVSM+D S+R I+ L K+LKE+ GV+ LYITHDL+TA Y +D IAVM+ G I
Sbjct: 174 SLLVADEPVSMVDASLRMSIVNLFKDLKEQYGVSVLYITHDLTTAYYVSDRIAVMFRGNI 233
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERK-DVIKELPIKGEVPSAVNIPPGCRFHP 301
VE+GPA++V+ P HPYT+ L +VPEP P++K D+ +L E A + GC+F
Sbjct: 234 VELGPAEKVLMEPKHPYTQLLRESVPEPDPKKKWDIRIKL---SETEQAEYLRQGCKFAG 290
Query: 302 RC 303
RC
Sbjct: 291 RC 292
>dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [Ochrobactrum
anthropi]
Length = 335
Score = 243 bits (614), Expect = 2e-63
Identities = 136/327 (41%), Positives = 198/327 (59%), Gaps = 13/327 (3%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P L VE+L F R + P VRAVDG+S V + LVGESG GK+T G
Sbjct: 5 PALVVEDLVVEFAKSRTLADLVTRRPASAVRAVDGVSLSVQAGETLGLVGESGSGKSTIG 64
Query: 64 KLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEE 123
+ ++ L EP G I+ +G+ R RRR+QM+FQDP+SS+NPR +I D + E
Sbjct: 65 RAILGLNEPLSGTIHFDGRPTHSRRD------LRRRMQMVFQDPYSSLNPRLKIGDAIGE 118
Query: 124 PLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
L H I + + + + + L +V ++ R P +SGGQRQR IARAL L P
Sbjct: 119 VLRFHSI-VPKQDVDREVRRLLSLVGLSAA--MAERRPREMSGGQRQRAGIARALALRPD 175
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
F+V DEPV+ LDVSI+A+IL L+ +L++++G+T L+I H L R+ +D IAV+YLG+I+
Sbjct: 176 FLVLDEPVAALDVSIQAQILNLLTDLRQELGLTMLFIAHGLGVVRHMSDRIAVLYLGKIM 235
Query: 244 EMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRC 303
E+GPA V ++ HPYT+ALL+AVPE ++ + +G+VPS +N+P GCRF RC
Sbjct: 236 EVGPAHAVFESSRHPYTKALLSAVPEINLVKRQ--RPPVTQGDVPSPLNVPSGCRFRTRC 293
Query: 304 VYFKKGLCDTKEPKLIEYSHNHWVECH 330
+ +C T+ P+ + +H+ CH
Sbjct: 294 P-VAQDICKTQPPE-VPVGPDHFSRCH 318
>pir||C72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980544|gb|AAD35152.1|AE001692_9 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 331
Score = 243 bits (613), Expect = 3e-63
Identities = 140/341 (41%), Positives = 206/341 (60%), Gaps = 25/341 (7%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L++ +LK YF + G V+AVDG+SF++ + ++ LVGESGCGK+ T
Sbjct: 2 EKVLEIRDLKVYFDLTEGT-----------VKAVDGVSFDIRRGEILGLVGESGCGKSVT 50
Query: 63 GKLVVKLLEPT----DGKIYLEGQ----DVTQLRTK-EEIKAYRRR-VQMIFQDPFSSMN 112
+ ++++L + +G+I D+T+L + EEI+ R + + MIFQ+P +S +
Sbjct: 51 AQSILRILPKSARIVNGEIVFHRNGKTLDLTRLDPEGEEIRDIRGKDISMIFQEPMASFS 110
Query: 113 PRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRV 172
P + + + E +L+H ++ E + + + L+ VKI E+ V +P LSGG QR
Sbjct: 111 PVYTVGAQMIEAILLHE-NVSKEEARKRVVEMLKKVKIPNAEKVVDMYPFELSGGMLQRC 169
Query: 173 AIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFAD 232
IA A+ LNPT ++ADEP + LDV+I+A+IL LMKEL+++ + L ITHD+ AD
Sbjct: 170 MIAMAMSLNPTLLLADEPTTALDVTIQAQILYLMKELQKEYHSSILLITHDMGVVAQMAD 229
Query: 233 WIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVN 292
+AVMYLG IVE E+ NPLHPYT+ALL ++P+ I RK ++ IKG VP N
Sbjct: 230 RVAVMYLGNIVETAEVFELFKNPLHPYTQALLRSIPK-IGIRKTRLE--TIKGMVPDPYN 286
Query: 293 IPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
+P GCRFH RC F KGLCD KEP +E H V+C G
Sbjct: 287 LPTGCRFHNRCEKFMKGLCDVKEPPEVEVKPGHKVKCFLYG 327
>pir||A72452 probable peptide transport ATP-binding protein APE2261 - Aeropyrum
pernix (strain K1) >gi|5105962|dbj|BAA81273.1|
(AP000064) 320aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 320
Score = 242 bits (612), Expect = 4e-63
Identities = 133/319 (41%), Positives = 197/319 (61%), Gaps = 24/319 (7%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L +++LK ++ G VRAVDG+S V K + ++VGESG GK+T
Sbjct: 7 VLDIQDLKVHYYTLTGI-----------VRAVDGVSLSVNKGEWISIVGESGSGKSTLAL 55
Query: 65 LVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRFRIYD 119
+ +L+ P G+I G D+ L EE++ YR R + M+FQDP + ++P +
Sbjct: 56 SIPRLIMPPGRIVGGRILYSGVDLLSL-AGEELRRYRGREIGMVFQDPTAYLDPYRTVGS 114
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+ E LL HG+ + +E E + ALE+V I P + +PH LSGGQRQRVAIA A+
Sbjct: 115 QIAESLLEHGLASSGSEAESMAGDALELVGI--PRDRASVYPHQLSGGQRQRVAIAAAVA 172
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
L P ++ADEP + LDV ++A+I++LMK+L+E+ G+T + +THD+ A ++D IAVMY
Sbjct: 173 LEPKILIADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYA 232
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
G +VE+GPA++V+ NP+HPYT L+ +VP+P +R+ +K PI G P N PPGCRF
Sbjct: 233 GELVEIGPAEDVVSNPIHPYTEMLIKSVPDPWEDRE--VK--PIPGSPPDLRNPPPGCRF 288
Query: 300 HPRCVYFKKGLCDTKEPKL 318
HPRC ++ LC P L
Sbjct: 289 HPRCP-LRQPLCTNTRPSL 306
>dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-binding protein in bcr
5'region. [Escherichia coli] >gi|4062406|dbj|BAA35524.1|
(D90721) Hypothetical ABC transporter ATP-binding
protein in bcr 5'region. [Escherichia coli]
Length = 659
Score = 242 bits (610), Expect = 6e-63
Identities = 133/302 (44%), Positives = 195/302 (64%), Gaps = 21/302 (6%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
EP+L+V NL FP+R G L + E V AV+ +SF+++ + +LVGESG GK+TT
Sbjct: 347 EPVLRVRNLVTRFPLRSGLLNRVTRE----VHAVEKVSFDLWPGETLSLVGESGSGKSTT 402
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+ +++L+E G+I GQ + L + +++A RR +Q IFQDP++S++PR I D +
Sbjct: 403 GRALLRLVESQGGEIIFNGQRIDTL-SPGKLQALRRDIQFIFQDPYASLDPRQTIGDSII 461
Query: 123 EPLLIHGI--GETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
EPL +HG+ G+ A R + LE V + P E+ R+PH SGGQRQR+ IARAL L
Sbjct: 462 EPLRVHGLLPGKDAAARVAWL---LERVGLLP--EHAWRYPHEFSGGQRQRICIARALAL 516
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NP I+ADE VS LDVSIR +I+ L+ +L+ G+ YL+I+HD++ + +AVMYLG
Sbjct: 517 NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 576
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERK---------DVIKELPIKGEVPSAV 291
+IVE+GP + V +NP HPYTR LLAAVP P R+ D+ + ++GE +AV
Sbjct: 577 QIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAV 636
Query: 292 NI 293
++
Sbjct: 637 SL 638
Score = 183 bits (459), Expect = 3e-45
Identities = 107/278 (38%), Positives = 160/278 (57%), Gaps = 28/278 (10%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L VENL F + QQ + AV +SF + + + A+VGESG GK+ T
Sbjct: 48 VLAVENLNIAFM-----------QDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTAL 96
Query: 65 LVVKLLEPTDG-----KIYLEGQDVTQLRTKEEIKAYRRRVQ-----MIFQDPFSSMNPR 114
+++LLE G K+ L+ + + E+ A R V+ MIFQ+P +S+NP
Sbjct: 97 ALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPV 156
Query: 115 FRIYDVLEEPLLIHGIGETRAEREELIYKA---LEMVKITPPEEYVGRFPHMLSGGQRQR 171
F + + + E + +H A REE + +A L+ V+I + + R+PH LSGG RQR
Sbjct: 157 FTVGEQIAESIRLH----QNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQR 212
Query: 172 VAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFA 231
V IA AL P ++ADEP + LDV+I+A+IL+L+K L+++M + ++ITHD+ A
Sbjct: 213 VMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA 272
Query: 232 DWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE 269
D + VMY G VE G +++ P HPYTRALLAAVP+
Sbjct: 273 DRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQ 310
>sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YLIA
Length = 629
Score = 242 bits (610), Expect = 6e-63
Identities = 133/302 (44%), Positives = 195/302 (64%), Gaps = 21/302 (6%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
EP+L+V NL FP+R G L + E V AV+ +SF+++ + +LVGESG GK+TT
Sbjct: 317 EPVLRVRNLVTRFPLRSGLLNRVTRE----VHAVEKVSFDLWPGETLSLVGESGSGKSTT 372
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+ +++L+E G+I GQ + L + +++A RR +Q IFQDP++S++PR I D +
Sbjct: 373 GRALLRLVESQGGEIIFNGQRIDTL-SPGKLQALRRDIQFIFQDPYASLDPRQTIGDSII 431
Query: 123 EPLLIHGI--GETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
EPL +HG+ G+ A R + LE V + P E+ R+PH SGGQRQR+ IARAL L
Sbjct: 432 EPLRVHGLLPGKDAAARVAWL---LERVGLLP--EHAWRYPHEFSGGQRQRICIARALAL 486
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NP I+ADE VS LDVSIR +I+ L+ +L+ G+ YL+I+HD++ + +AVMYLG
Sbjct: 487 NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 546
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERK---------DVIKELPIKGEVPSAV 291
+IVE+GP + V +NP HPYTR LLAAVP P R+ D+ + ++GE +AV
Sbjct: 547 QIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAV 606
Query: 292 NI 293
++
Sbjct: 607 SL 608
Score = 183 bits (459), Expect = 3e-45
Identities = 107/278 (38%), Positives = 160/278 (57%), Gaps = 28/278 (10%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L VENL F + QQ + AV +SF + + + A+VGESG GK+ T
Sbjct: 18 VLAVENLNIAFM-----------QDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTAL 66
Query: 65 LVVKLLEPTDG-----KIYLEGQDVTQLRTKEEIKAYRRRVQ-----MIFQDPFSSMNPR 114
+++LLE G K+ L+ + + E+ A R V+ MIFQ+P +S+NP
Sbjct: 67 ALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPV 126
Query: 115 FRIYDVLEEPLLIHGIGETRAEREELIYKA---LEMVKITPPEEYVGRFPHMLSGGQRQR 171
F + + + E + +H A REE + +A L+ V+I + + R+PH LSGG RQR
Sbjct: 127 FTVGEQIAESIRLH----QNASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQR 182
Query: 172 VAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFA 231
V IA AL P ++ADEP + LDV+I+A+IL+L+K L+++M + ++ITHD+ A
Sbjct: 183 VMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA 242
Query: 232 DWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE 269
D + VMY G VE G +++ P HPYTRALLAAVP+
Sbjct: 243 DRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQ 280
>pir||E64820 probable oligopeptide transport protein - Escherichia coli
>gi|1787051|gb|AAC73916.1| (AE000185) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 612
Score = 242 bits (610), Expect = 6e-63
Identities = 133/302 (44%), Positives = 195/302 (64%), Gaps = 21/302 (6%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
EP+L+V NL FP+R G L + E V AV+ +SF+++ + +LVGESG GK+TT
Sbjct: 300 EPVLRVRNLVTRFPLRSGLLNRVTRE----VHAVEKVSFDLWPGETLSLVGESGSGKSTT 355
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G+ +++L+E G+I GQ + L + +++A RR +Q IFQDP++S++PR I D +
Sbjct: 356 GRALLRLVESQGGEIIFNGQRIDTL-SPGKLQALRRDIQFIFQDPYASLDPRQTIGDSII 414
Query: 123 EPLLIHGI--GETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
EPL +HG+ G+ A R + LE V + P E+ R+PH SGGQRQR+ IARAL L
Sbjct: 415 EPLRVHGLLPGKDAAARVAWL---LERVGLLP--EHAWRYPHEFSGGQRQRICIARALAL 469
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NP I+ADE VS LDVSIR +I+ L+ +L+ G+ YL+I+HD++ + +AVMYLG
Sbjct: 470 NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 529
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERK---------DVIKELPIKGEVPSAV 291
+IVE+GP + V +NP HPYTR LLAAVP P R+ D+ + ++GE +AV
Sbjct: 530 QIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAV 589
Query: 292 NI 293
++
Sbjct: 590 SL 591
Score = 182 bits (457), Expect = 5e-45
Identities = 101/255 (39%), Positives = 153/255 (59%), Gaps = 17/255 (6%)
Query: 28 EPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDG-----KIYLEGQ 82
+ QQ + AV +SF + + + A+VGESG GK+ T +++LLE G K+ L+ +
Sbjct: 13 QDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRR 72
Query: 83 DVTQLRTKEEIKAYRRRVQ-----MIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAER 137
+ E+ A R V+ MIFQ+P +S+NP F + + + E + +H A R
Sbjct: 73 SREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH----QNASR 128
Query: 138 EELIYKA---LEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSML 194
EE + +A L+ V+I + + R+PH LSGG RQRV IA AL P ++ADEP + L
Sbjct: 129 EEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTAL 188
Query: 195 DVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDN 254
DV+I+A+IL+L+K L+++M + ++ITHD+ AD + VMY G VE G +++
Sbjct: 189 DVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHA 248
Query: 255 PLHPYTRALLAAVPE 269
P HPYTRALLAAVP+
Sbjct: 249 PQHPYTRALLAAVPQ 263
>pir||G71211 probable oligopeptide transport ATP-binding protein appD -
Pyrococcus horikoshii >gi|3258403|dbj|BAA31086.1|
(AP000007) 322aa long hypothetical oligopeptide
transport ATP-binding protein appD [Pyrococcus
horikoshii]
Length = 322
Score = 241 bits (608), Expect = 1e-62
Identities = 133/334 (39%), Positives = 204/334 (60%), Gaps = 23/334 (6%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M + IL+V+NLK Y+ RG V+AVD ++F++ K +V L GESGCGK+
Sbjct: 4 MGKKILEVKNLKMYYFTSRGP-----------VKAVDDVTFDLEKGEVLGLAGESGCGKS 52
Query: 61 TTGKLVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRF 115
+ G ++ + +P G I ++G+++ L + R +++ MIFQ +++NP +
Sbjct: 53 SIGFTLMGMPQPPGRIVGGSIKIDGREIVGLPEDVLRREIRWQKISMIFQGAMNALNPVY 112
Query: 116 RIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIA 175
+ + EPL+ H G R + + K LE+V + P E V R+PH LSGG +QRV IA
Sbjct: 113 TVGYQMIEPLIYHK-GMDREDALDRAMKYLELVGLDP--EIVYRYPHELSGGMKQRVVIA 169
Query: 176 RALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIA 235
AL+L P ++ADEP + LDV ++A+I+ LMK LK+K+G++ ++ITHDLS +D +A
Sbjct: 170 MALLLEPDIVIADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDRVA 229
Query: 236 VMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPP 295
VMY G++VE+GP++++ P HPYT+ LLAA+P +DV K I G P+ +N P
Sbjct: 230 VMYAGKLVEIGPSEKIYYEPAHPYTQKLLAAIPR---LHEDVEKLEFIPGSPPNLINPPS 286
Query: 296 GCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
GCRFHPRC Y C +EPK++E +H+ C
Sbjct: 287 GCRFHPRCPY-AMDKCKEEEPKMVEVDKDHYAAC 319
>sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075085|pir||B64184 oligopeptide transport
ATP-binding protein oppF - Haemophilus influenzae
(strain Rd KW20) >gi|1574675|gb|AAC22774.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppF)
[Haemophilus influenzae Rd]
Length = 332
Score = 238 bits (602), Expect = 5e-62
Identities = 130/332 (39%), Positives = 209/332 (62%), Gaps = 10/332 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L+V +L F I+ SL Q ++AV +SF++Y + +VGESGCGK+T
Sbjct: 8 ELLLEVNHLGVSFKIKND--KSLFFAKPQTLKAVKDVSFKLYAGETLGVVGESGCGKSTL 65
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
+ ++ L+E ++G+I G+ + + K+ K R+ +QMIFQDP +S+NPR I +++
Sbjct: 66 ARAIIGLVEASEGEILWLGKHLRKQSAKQW-KETRKDIQMIFQDPLASLNPRMNIGEIIA 124
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
EPL I+ + AE +E + + V + P + R+PH SGGQ QR+ IARALI+ P
Sbjct: 125 EPLKIYQPHLSAAEVKEKVQAMMLKVGLLP--NLINRYPHEFSGGQCQRIGIARALIIEP 182
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
I+ DEPVS LDVSI+A+++ L+K L+++MG++ ++I HDL+ ++ +D + VMYLG
Sbjct: 183 KMIICDEPVSALDVSIQAQVVNLLKSLQKEMGLSLIFIAHDLAVVKHISDRVLVMYLGNA 242
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIP--ERKDVIKELPIKGEVPSAVNIPPGCRFH 300
+E+G EV ++ HPYT+AL++AVP P P ER I+ L +G++PS +N P GC F
Sbjct: 243 MELGSDVEVYNDTKHPYTKALMSAVPIPDPKLERNKSIELL--EGDLPSPINPPSGCVFR 300
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECHRV 332
RC+ + C ++P +++H+V C +V
Sbjct: 301 TRCLKADEN-CAKQKPPFTSQNNSHFVACLKV 331
>pir||F71014 probable dipeptide transport ATP-binding protein dppD - Pyrococcus
horikoshii >gi|3257835|dbj|BAA30518.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppD [Pyrococcus horikoshii]
Length = 329
Score = 238 bits (600), Expect = 9e-62
Identities = 136/338 (40%), Positives = 196/338 (57%), Gaps = 26/338 (7%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
EPIL+V +L +F G V+A++ +SF+VYK + FALVGE+GCGK+ T
Sbjct: 6 EPILQVRDLTVHFYTYAGI-----------VKAIEKVSFDVYKGETFALVGETGCGKSVT 54
Query: 63 GKLVVKLLEPTDGKI-------YLEGQDVTQLR--TKEEIKAYR-RRVQMIFQDPFSSMN 112
+ + +L+E + G+I Y E V L ++EEI+ R + IFQDP SS++
Sbjct: 55 SRAITQLIE-SPGRIVGGQVLYYREDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHSSLD 113
Query: 113 PRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRV 172
P + + + E + +HG + E + L+ V I P+ V +PH LSGG +QRV
Sbjct: 114 PLYTVGYQIAEAMEVHGKIKNIKEGIKKAVDILKSVLIPDPQRRVNNYPHELSGGMKQRV 173
Query: 173 AIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFAD 232
I L NP ++ADEP + LDV+++A+IL+L+ +LKEK T + ITH+L AD
Sbjct: 174 VIGIGLSNNPRILIADEPTTALDVTVQAQILDLINQLKEKYKATVILITHNLGVVAETAD 233
Query: 233 WIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVN 292
+AVMY G+IVE+G ++ NPLHPYT+ LL AVP P+ + + K I G VP+ +N
Sbjct: 234 RVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTK---IEKLEAIPGTVPNLIN 290
Query: 293 IPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
P GCRFHPRC +C K P+L E H+V CH
Sbjct: 291 PPSGCRFHPRCPK-AMDICKQKVPELKEIEPGHFVACH 327
>dbj|BAB07358.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 308
Score = 237 bits (599), Expect = 1e-61
Identities = 122/282 (43%), Positives = 191/282 (67%), Gaps = 10/282 (3%)
Query: 6 LKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKL 65
LKVE+LK +FPI+ G + G + +AVDG+S E+ + Q + LVGESG GKTTTG+
Sbjct: 4 LKVEDLKVHFPIKGGVIPHTVG----YNKAVDGVSLELEEGQTYGLVGESGSGKTTTGRA 59
Query: 66 VVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPL 125
++ L + T G I +GQD+T+ + K++ RR +QMIFQDP+SS+NP+ R+ D++ EPL
Sbjct: 60 IIGLNKLTAGHILFDGQDITK-QLKKKKNDIRRNIQMIFQDPYSSLNPKKRVLDIIAEPL 118
Query: 126 LIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFI 185
+ ++ E + + + LE+V ++ E + ++PH SGGQRQR+ IARA+ L P I
Sbjct: 119 R-NFEKLSKLEERKRVEELLEIVGLS--RESIFKYPHEFSGGQRQRIGIARAIALKPKLI 175
Query: 186 VADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEM 245
+ADEPVS LDVS++A++L MK+++++ +TYL+I+HDL R+ D I +MY GR+VE
Sbjct: 176 IADEPVSALDVSVQAQVLNFMKDIQKEFNLTYLFISHDLGIIRHMCDRIGIMYRGRLVEE 235
Query: 246 GPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEV 287
G ++ ++P H YT+ L+AA+P+ P+ +D K ++ EV
Sbjct: 236 GVRDDIYESPQHIYTKRLIAAIPDMDPKNRD--KHTQLRAEV 275
>gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 617
Score = 236 bits (597), Expect = 2e-61
Identities = 129/271 (47%), Positives = 185/271 (67%), Gaps = 14/271 (5%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E ++K+ NL K + IR+ + S EP + AV+ +SFE+ K + ALVG SG GK+T
Sbjct: 354 EVVMKILNLSKIYYIRKNLILS---EP---INAVNDVSFELKKGTITALVGGSGHGKSTI 407
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
K++ +++ T GKI L G+DV++ + + Y+ VQMIFQDP+SS++PR + +E
Sbjct: 408 AKILAGMIQQTSGKIILLGKDVSEYGVRNSMW-YKENVQMIFQDPYSSLDPRHTVRWHVE 466
Query: 123 EPLLIHGIGETRAEREELIYKALEMVK---ITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
PLLIH + + +++L+ K +E++K + PPE+Y+ ++PH LSGG+RQRVAIARA
Sbjct: 467 RPLLIH---KKVSNKDQLLPKIIEVLKNVGLKPPEKYLYKYPHELSGGERQRVAIARATA 523
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
+ P +VADEPVSMLD S+RA IL L+K+ K K G++ LYITHD++T Y AD I V+Y
Sbjct: 524 VEPKVLVADEPVSMLDASLRAGILNLIKKFK-KNGISILYITHDIATVNYIADEIMVIYK 582
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEP 270
GRIVE G EVI NP H YT+ L+ AVP+P
Sbjct: 583 GRIVEKGNTYEVISNPSHEYTKRLIEAVPDP 613
Score = 193 bits (485), Expect = 3e-48
Identities = 110/305 (36%), Positives = 178/305 (58%), Gaps = 17/305 (5%)
Query: 32 FVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTD----GKIYLEGQDVTQL 87
FV V ++FEVY ++FA+ GESGCGK+T + LL+ G +YL+ +D+ +
Sbjct: 24 FVIGVTNVNFEVYPNEIFAIAGESGCGKSTLAMAIYGLLKYPGVVLRGHVYLKDKDILSI 83
Query: 88 RTKEEIKAYRRRVQMIFQDPFS--SMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKAL 145
T+EE++ R + + ++ F+ +++P +I D + + HG+ A + LI + L
Sbjct: 84 -TQEELRKLRMK-EFVYVPQFAMDALDPVAKIGDQMMRAAVSHGVNVEEARK--LIKEKL 139
Query: 146 EMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILEL 205
E+V + P V +PH LSGG RQRV IA +++LNP+ I+ DEP + LDV ++ EIL+
Sbjct: 140 ELVDL--PYNVVNMYPHELSGGMRQRVVIATSILLNPSLIILDEPTTGLDVIVQYEILKD 197
Query: 206 MKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLA 265
+K ++ ++GV+ + I+HD+S +D + +MY G IVE+G +E+I P HPYT L++
Sbjct: 198 LKRIQRQLGVSLVIISHDISMLLMISDRVGIMYAGEIVEIGSKEEIIKRPSHPYTYLLIS 257
Query: 266 AVPEPIPERKDVIKELPIKGEVPSAVN-IPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHN 324
++P + R+ K L I G P ++ +P CRF+ RC FK C T P L +
Sbjct: 258 SLPSLVKRRE---KLLSIPGNPPLMLSKVPNSCRFYDRCP-FKMEKCSTLNPALGDIMDG 313
Query: 325 HWVEC 329
H C
Sbjct: 314 HKARC 318
>sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIF
>gi|98019|pir||S11153 oligopeptide transport protein
amiF - Streptococcus pneumoniae
>gi|47347|emb|CAA35217.1| (X17337) AmiF protein
[Streptococcus pneumoniae]
Length = 308
Score = 235 bits (594), Expect = 5e-61
Identities = 124/303 (40%), Positives = 196/303 (63%), Gaps = 20/303 (6%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+E ++++++L+ F GE + AV +F + K + F+LVGESG GKT
Sbjct: 1 MSEKLVEIKDLEISF-----------GEGSKKFVAVKNANFFINKGETFSLVGESGSGKT 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T G+ ++ L + ++G I +GQ + +++E+ RR+QMIFQDP +S+N R + +
Sbjct: 50 TIGRAIIGLNDTSNGDIIFDGQKINGKKSREQAAELIRRIQMIFQDPAASLNERATVDYI 109
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E L H + + ER+E + + V + E++ R+PH SGGQRQR+ IARAL++
Sbjct: 110 ISEGLYNHRLFKDEEERKEKVQSIIREVGLLA--EHLTRYPHEFSGGQRQRIGIARALVM 167
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P F++ADEP+S LDVS+RA++L L+K+ ++++G+TYL+I HDLS R+ +D IAV+Y G
Sbjct: 168 QPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKG 227
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAV--PEPIPERKDVIK-----ELPIKGEVPSAVNI 293
IVE+ +E+ +NP+HPYT+ALL+AV P+PI ERK V+K + + + PS V I
Sbjct: 228 VIVEVAETEELFNNPIHPYTQALLSAVPIPDPILERKKVLKVYEGSQHDYETDKPSMVEI 287
Query: 294 PPG 296
PG
Sbjct: 288 RPG 290
>pir||F64557 dipeptide transport ATP-binding protein dppF - Helicobacter pylori
(strain 26695) >gi|2313400|gb|AAD07371.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Helicobacter pylori 26695]
Length = 268
Score = 235 bits (593), Expect = 6e-61
Identities = 119/265 (44%), Positives = 183/265 (68%), Gaps = 11/265 (4%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+++ LKK + I RG +P++ + A++GISFEV + +V ++VGESGCGK+TT K
Sbjct: 3 LLEIKELKKSYAIDRGLF-----KPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAK 57
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
++ + G IY G+ +K++ YR++VQMIFQDP+SS+NPR+++ +++ EP
Sbjct: 58 ILAGIERQDSGAIYFNGKRHLHF-SKQDWFDYRKKVQMIFQDPYSSLNPRWKVGEIIAEP 116
Query: 125 LLIHGIGETRAEREELIYKALE-MVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
LL++ + ++E+ K LE M K+ E++ R+PH SGGQRQR+ IARALIL+P+
Sbjct: 117 LLLN----SHFSKKEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHPS 172
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
++ DEPVS LDVSI+A++L L+ +L+++MG+TY++I+HDL + +D I VM G+IV
Sbjct: 173 VVICDEPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIV 232
Query: 244 EMGPAKEVIDNPLHPYTRALLAAVP 268
E G VI P HPYT+ LL AVP
Sbjct: 233 ETGDVDSVISAPKHPYTQKLLNAVP 257
>pir||A71952 dipeptide transport system ATP-binding protein - Helicobacter
pylori (strain J99) >gi|4154801|gb|AAD05857.1|
(AE001465) DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 268
Score = 235 bits (593), Expect = 6e-61
Identities = 119/265 (44%), Positives = 183/265 (68%), Gaps = 11/265 (4%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+++ LKK + I RG +P++ + A++GISFEV + +V ++VGESGCGK+TT K
Sbjct: 3 LLEIKELKKSYAIDRGLF-----KPKRVIHALNGISFEVEQNEVLSIVGESGCGKSTTAK 57
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
++ + G IY G+ +K++ YR++VQMIFQDP+SS+NPR+++ +++ EP
Sbjct: 58 ILAGIERQDSGAIYFNGKRHLHF-SKQDWFDYRKKVQMIFQDPYSSLNPRWKVGEIIAEP 116
Query: 125 LLIHGIGETRAEREELIYKALE-MVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
LL++ + ++E+ K LE M K+ E++ R+PH SGGQRQR+ IARALIL+P+
Sbjct: 117 LLLN----SHFSKKEIKTKVLEIMQKVGLKLEWIDRYPHQFSGGQRQRIGIARALILHPS 172
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
++ DEPVS LDVSI+A++L L+ +L+++MG+TY++I+HDL + +D I VM G+IV
Sbjct: 173 VVICDEPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVVEHISDKIIVMNQGQIV 232
Query: 244 EMGPAKEVIDNPLHPYTRALLAAVP 268
E G VI P HPYT+ LL AVP
Sbjct: 233 ETGDVDSVISAPKHPYTQKLLNAVP 257
>pir||H75117 peptide abc transporter ATP-binding protein PAB1874 - Pyrococcus
abyssi (strain Orsay) >gi|5458168|emb|CAB49657.1|
(AJ248285) PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN
[Pyrococcus abyssi]
Length = 329
Score = 235 bits (593), Expect = 6e-61
Identities = 133/339 (39%), Positives = 195/339 (57%), Gaps = 28/339 (8%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
EPIL+V NL +F G V+A++ +SF+VYK + FALVGE+GCGK+ T
Sbjct: 6 EPILQVRNLTVHFYTYAGI-----------VKAIEKVSFDVYKGETFALVGETGCGKSVT 54
Query: 63 GKLVVKLLEPTDGKIYLEGQ-----------DVTQLRTKEEIKAYRRRVQMIFQDPFSSM 111
+ + +L+E + G+I +EGQ D+ +L +E K + IFQDP +S+
Sbjct: 55 SRAITQLIE-SPGRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASL 112
Query: 112 NPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQR 171
+P + + + E + +HG ++ E + L+ V I P V +PH LSGG +QR
Sbjct: 113 DPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQR 172
Query: 172 VAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFA 231
V I + NP ++ADEP + LDV+I+A+IL+L+ ++KEK T + ITH+L A
Sbjct: 173 VVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETA 232
Query: 232 DWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAV 291
D +AVMY G+IVE+G ++ NPLHPYT+ LL AVP P+ + + K I G VP+ +
Sbjct: 233 DRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTK---IEKLEAIPGTVPNLI 289
Query: 292 NIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
P GCRFHPRC +C K P+L E H+V CH
Sbjct: 290 TPPGGCRFHPRCPKV-MSICKEKVPELKEIEPGHFVACH 327
>pir||T45281 probable ABC transporter intracellular ATPase chain BldKE
[imported] - Streptomyces coelicolor (fragment)
>gi|1532205|gb|AAB09558.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldKE
[Streptomyces coelicolor A3(2)]
Length = 284
Score = 234 bits (591), Expect = 1e-60
Identities = 117/254 (46%), Positives = 172/254 (67%), Gaps = 7/254 (2%)
Query: 16 PIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDG 75
PI+ GF P ++AVD + FEV+ + LVGESGCGK+TTG+ + +L EPT G
Sbjct: 27 PIKGGFPDQAHRRP---LKAVDRVDFEVFPGRELGLVGESGCGKSTTGRQLTRLYEPTQG 83
Query: 76 KIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRA 135
I G+D+T+ + E+ R +QMIFQDP++S+NPR + ++ P+ I+GI
Sbjct: 84 SIEYRGKDITRAN-RRELAPVRSEIQMIFQDPYASLNPRQTVGTIISGPMEINGINPPGG 142
Query: 136 EREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLD 195
RE+ + + LE+V + P E+ RFPH SGGQRQR+ +ARA+ L P IVADEPVS LD
Sbjct: 143 -REKRVRELLEIVGLNP--EHYNRFPHEFSGGQRQRIGVARAVALQPKLIVADEPVSALD 199
Query: 196 VSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNP 255
VSI+A+++ L++E++ +MG+ +++I HDL+ R+F+ +AVMYLG+IVE+ + + P
Sbjct: 200 VSIQAQVVNLLQEVQREMGIAFVFIAHDLAIVRHFSQRVAVMYLGKIVEIADRDSLYNRP 259
Query: 256 LHPYTRALLAAVPE 269
HPYT ALL+AVPE
Sbjct: 260 RHPYTHALLSAVPE 273
>pir||A72284 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981747|gb|AAD36271.1|AE001776_7 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 319
Score = 233 bits (587), Expect = 3e-60
Identities = 124/314 (39%), Positives = 197/314 (62%), Gaps = 13/314 (4%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E L ++NL K + I S + AVD +SF + + ++F L GESGCGK+TT
Sbjct: 2 EDTLILKNLTKVYSIGSLLFRSK-------ITAVDDVSFSLKRAEIFTLAGESGCGKSTT 54
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
K+++ EPT G I EG + + ++ K + R+VQ +FQ+PF S NP + D+
Sbjct: 55 AKMILGFEEPTSGDIIFEGNSIQWWKKRK--KDFLRKVQAVFQNPFESFNPLLTVDDIFF 112
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E ++ +G+ +R E E+LI + L++V + E+ GR+ LSGGQ QR +IAR+L+ NP
Sbjct: 113 ETVMNYGLANSRNEAEKLIDEKLQLVGLKF-EDINGRYQSELSGGQLQRASIARSLLSNP 171
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
+ ++ADEPVSM+D S+R I+ L +L++++GV+ +YITHDL+TA Y +D IA+M+ G I
Sbjct: 172 SLLIADEPVSMVDASLRMSIVNLFAKLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGNI 231
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPR 302
VE GP +V+ +P HPYT+ L ++P+P PE+K +E+ + + + GC+F R
Sbjct: 232 VETGPVDKVLIDPKHPYTQLLRESIPDPDPEKK-WSREITV-SDTEYEEYLKEGCKFAGR 289
Query: 303 CVYFKKGLCDTKEP 316
C Y K+ +C ++P
Sbjct: 290 CPYVKE-ICRREKP 302
>pir||F72617 probable dipeptide transport system ATP-binding protein APE1399 -
Aeropyrum pernix (strain K1) >gi|5105082|dbj|BAA80396.1|
(AP000061) 333aa long hypothetical dipeptide transport
system ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 231 bits (583), Expect = 9e-60
Identities = 129/337 (38%), Positives = 195/337 (57%), Gaps = 26/337 (7%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
+PI++VENLK YF G V+A++ +SF + + + + LVGE+GCGK+ T
Sbjct: 7 DPIIEVENLKVYFYTYAGI-----------VKAIEDVSFRICRGETYCLVGETGCGKSVT 55
Query: 63 GKLVVKLLEP----TDGKIYLEGQ-----DVTQLRTKEEIKAYRRRVQMIFQDPFSSMNP 113
+ + +L+ P +GKIY + D+ L KE + + IFQDP ++++P
Sbjct: 56 SRALTRLIYPPGRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDP 115
Query: 114 RFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVA 173
+ I + E +L HG + E L+ V + PE+ V +PH LSGG +QR
Sbjct: 116 LYTIGYQVGETMLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGV 175
Query: 174 IARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADW 233
I +L P ++ADEP + LDV+I+A+I++L+ +LK + G+T L ITH+L + D
Sbjct: 176 IGISLSNRPKLLIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDR 235
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNI 293
+AVMY G IVE P E+ NPLHPYTRAL+ AVP P+ + ++ ++ +P G VP+ +
Sbjct: 236 VAVMYAGNIVEEAPVDELFSNPLHPYTRALIRAVPNPLAKIEN-LEHIP--GTVPNLITP 292
Query: 294 PPGCRFHPRC-VYFKKGLCDTKEPKLIEYSHNHWVEC 329
PPGCRFHPRC + F + C ++P L EYS H C
Sbjct: 293 PPGCRFHPRCPLAFDR--CSREKPLLKEYSPGHKAAC 327
>sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD >gi|98274|pir||S16650
dipeptide transport ATP-binding protein dppD - Bacillus
subtilis >gi|48807|emb|CAA40005.1| (X56678) dciAD
[Bacillus subtilis] >gi|2632016|emb|CAA05575.1|
(AJ002571) DppD [Bacillus subtilis]
>gi|2633649|emb|CAB13152.1| (Z99110) dipeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 335
Score = 229 bits (578), Expect = 3e-59
Identities = 134/334 (40%), Positives = 189/334 (56%), Gaps = 25/334 (7%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L V+NL F G V+AV G+SF++YK + FA+VGESGCGK+ T
Sbjct: 2 EKVLSVQNLHVSFTTYGGT-----------VQAVRGVSFDLYKGETFAIVGESGCGKSVT 50
Query: 63 GKLVVKLLEP-----TDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
+ ++ LL P TDG+I + +D+ +L KE + MIFQDP +++NP +
Sbjct: 51 SQSIMGLLPPYSAKVTDGRILFKNKDLCRLSDKEMRGIRGADISMIFQDPMTALNPTLTV 110
Query: 118 YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
D L E LL H +A R+E++ L +V I P E + ++PH SGG RQR+ IA A
Sbjct: 111 GDQLGEALLRHKKMSKKAARKEVL-SMLSLVGIPDPGERLKQYPHQFSGGMRQRIVIAMA 169
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
LI P ++ADEP + LDV+I+A+ILEL KE++ K V+ + ITHDL AD +AVM
Sbjct: 170 LICEPDILIADEPTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGVVAQVADRVAVM 229
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDV--IKELPIKGEVPSAVNIPP 295
Y G++ E+G K++ P HPYT+ LL +VP R D+ + PI G P + PP
Sbjct: 230 YAGKMAEIGTRKDIFYQPQHPYTKGLLGSVP-----RLDLNGAELTPIDGTPPDLFSPPP 284
Query: 296 GCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
GC F RC + +CD P S +H V C
Sbjct: 285 GCPFAARCPN-RMVVCDRVYPGQTIRSDSHTVNC 317
>pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AAC07852.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 228 bits (575), Expect = 8e-59
Identities = 125/300 (41%), Positives = 189/300 (62%), Gaps = 24/300 (8%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L ++NL K + + GFL + F A+ +S + + A+VGESG GK+T GK
Sbjct: 3 LLSIQNLTKVYKVPAGFLRK-----KNFF-ALKEVSLSIKQGDFLAIVGESGSGKSTLGK 56
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
++++L +PT GK+ +G+D+ + K Y R+V +FQDP SS+NPR ++ ++LEEP
Sbjct: 57 IILRLEKPTKGKVSFKGKDIFSMG-----KEYTRKVSAVFQDPRSSLNPRMKVEEILEEP 111
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
L++H + R+E + K L+ V+++ EE + + P +SGGQ QRVAIARALIL P
Sbjct: 112 LIVHRV----KGRKERVLKVLQRVRLS--EELLEKRPLQISGGQAQRVAIARALILEPEL 165
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
IVADEP + LDVS++ EILEL KEL K G+++ ++THD+ A+ + V+Y G ++E
Sbjct: 166 IVADEPTASLDVSVQEEILELFKELNSK-GISFFFVTHDIRVVEKVANMVGVIYAGILME 224
Query: 245 MGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIP-PGCRFHPRC 303
+G +EV+ NPLHPYT+ LL VP P+ + P+K V+IP GC F+PRC
Sbjct: 225 LGKKEEVLKNPLHPYTKFLLENVPVRHPKDRK-----PLKYLQEEEVSIPEEGCPFYPRC 279
>pir||H72215 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982327|gb|AAD36814.1|AE001813_6 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 324
Score = 227 bits (573), Expect = 1e-58
Identities = 132/333 (39%), Positives = 194/333 (57%), Gaps = 22/333 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L V NLK F G V+AVDGIS+++ K + +VGESG GK+ +
Sbjct: 4 LLNVNNLKVEFHRVEGI-----------VKAVDGISYKLNKGESLGIVGESGSGKSVSVL 52
Query: 65 LVVKLLEPT----DGKIYLEGQDVTQLRTKEEIKAYRRR-VQMIFQDPFSSMNPRFRIYD 119
+++L+ DG+ G+D+ +L KEE++ R + + +IFQ+P +S+NP R+
Sbjct: 53 SLLRLINRNGRIVDGEAIFLGKDLLKLN-KEELRNIRGKDISIIFQNPMTSLNPIIRVGI 111
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+ EP++ H + + RE I + LE V I + +P SGG RQRV IA AL
Sbjct: 112 QVMEPIIWHRLMKNEEARERAI-ELLERVGIPESPKRFLNYPFQFSGGMRQRVMIAMALA 170
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
+P ++ADEP + LDV+I+A+I+EL++ELKE+ G++ ++ITHDLS A F D I MY
Sbjct: 171 CHPKLLIADEPTTALDVTIQAQIMELLQELKEEYGMSVIFITHDLSVATNFCDRIITMYA 230
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
G+IVE P +E++ PLHPYT+ LL + E K K +PI G P+ P GC+F
Sbjct: 231 GKIVEEAPVEEILKTPLHPYTKGLLNSTLEIGSRGK---KLVPIPGNPPNPTKHPSGCKF 287
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRV 332
HPRC F +C +EP L+ S NH V CH +
Sbjct: 288 HPRC-SFAMEICQREEPPLVNISENHRVACHLI 319
>pir||H75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459331|gb|AAF11130.1|AE002000_6 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 386
Score = 226 bits (571), Expect = 2e-58
Identities = 130/345 (37%), Positives = 189/345 (54%), Gaps = 29/345 (8%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L V NLK YF G V++VDG++F + K + A+VGESG GK+ T
Sbjct: 31 EVLLAVNNLKTYFNTDDGV-----------VKSVDGVTFHIKKGETLAVVGESGSGKSVT 79
Query: 63 GKLVVKLL-----EPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQ-----MIFQDPFSSMN 112
V++L+ + G+I G+D Q +A RR++ MIFQ+P +S+N
Sbjct: 80 SLTVMRLIPMPPGQIAGGEILFTGKDGVQRNLVNVSEAEMRRIRGNDISMIFQEPMTSLN 139
Query: 113 PRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRV 172
P + + D + E +++H G+TR E ++ L V I PE+ V +PH +SGG RQRV
Sbjct: 140 PVYTVGDQIAEAVVLHQ-GKTRKEAMDVATDMLRFVGIPAPEKRVNEYPHQMSGGMRQRV 198
Query: 173 AIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFAD 232
IA AL P ++ADEP + LDV+I+A+IL+LM+ L+ ++G++ L+ITH+L AD
Sbjct: 199 MIAMALSCKPALLIADEPTTALDVTIQAQILDLMRNLQREVGMSILFITHNLGVVAEMAD 258
Query: 233 WIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELP------IKGE 286
+ VMY GR+VE G E+ P HPYT LL ++P P + + P I G
Sbjct: 259 RVVVMYGGRVVEEGDVIEIFKAPRHPYTMGLLNSIPRPSEDEHAHVPGQPKKRLEAIPGN 318
Query: 287 VPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHR 331
VP+ +N+PPGC F PRC F C P L + H C R
Sbjct: 319 VPNPLNLPPGCTFEPRC-KFAVPQCSQAVPALEDTGGGHMARCIR 362
>gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T45532 agaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665708|gb|AAB88468.1| (AF242881) agaD
[Agrobacterium tumefaciens]
Length = 569
Score = 226 bits (569), Expect = 4e-58
Identities = 118/267 (44%), Positives = 177/267 (66%), Gaps = 11/267 (4%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
+ +L + NL K F +R LA P++F RAVD +S ++ + LVGESGCGK+T
Sbjct: 302 QTLLTIRNLTKTFWLRESPLAP----PKEF-RAVDDVSLDIPARSTVGLVGESGCGKSTL 356
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
+LV++L+EP G I +G D+T L +E ++ R+ ++FQ+P+ S+NPR + D++
Sbjct: 357 SRLVMRLMEPNSGTIEFDGIDLTSL-DRERLRHARQNFALVFQNPYGSLNPRQTVTDLIA 415
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
P+ IH G +RE ++ K L+ V + P + + R+PH SGGQRQR+ IARAL L P
Sbjct: 416 APVDIHAKGR---DREAIVAKLLDAVGL--PRDAMRRYPHEFSGGQRQRIVIARALALRP 470
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
++ DE VS LDVS++A++L L+++L+++ +TYL+ITHD+S R+ +D IAVM GRI
Sbjct: 471 KLLICDEAVSALDVSVQAQVLNLLQDLQDEFDLTYLFITHDMSVVRHISDTIAVMQKGRI 530
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPE 269
VE G A+EV D+P YTR LL AVP+
Sbjct: 531 VETGTAEEVFDHPKDEYTRTLLRAVPK 557
Score = 156 bits (390), Expect = 4e-37
Identities = 94/271 (34%), Positives = 143/271 (52%), Gaps = 22/271 (8%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+LK++NL F G AV+ +S ++ ++ LVGESG GKT
Sbjct: 6 VLKIDNLTVAFKTGDGLRT-----------AVNSVSLSLHSGEILGLVGESGSGKTILSL 54
Query: 65 LVVKLLEPT----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
+ LL P G + G+D+ R K +R+ MIFQDP +S++P F
Sbjct: 55 AAMGLLPPNAVVAGGTVKFFGEDLLTARPDVLRKLRGKRIAMIFQDPMASLDPVFTCGSQ 114
Query: 121 LEEPLLIHGIGETRAEREELIYKALEM---VKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
+ E +L+H R R +AL++ V I PE +G +PH LSGGQ QRV IA A
Sbjct: 115 IVESILLH----ERVPRRNAHQRALDLLTKVGIVDPERCMGSYPHELSGGQCQRVMIAMA 170
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
+ P I+ADEP + LDV+++ ++L L++ L +++G L ITHDL AD +AV+
Sbjct: 171 VACKPDVIIADEPTTALDVTVQKQVLNLLQNLNQEIGAAILLITHDLGVIYEVADRVAVI 230
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVP 268
Y G ++E ++ P YT+AL+A++P
Sbjct: 231 YRGDMMEEAKTTDLFAAPKSAYTKALIASMP 261
>pir||E72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980804|gb|AAD35392.1|AE001712_5 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 316
Score = 225 bits (568), Expect = 5e-58
Identities = 119/268 (44%), Positives = 178/268 (66%), Gaps = 10/268 (3%)
Query: 6 LKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKL 65
+ V NL K F R G + SL+ + A+D +SFE+ ++F+L GESGCGKTTT K+
Sbjct: 3 VSVRNLTKIF--RVGSIFSLKK-----LVAIDNVSFEIGSGEIFSLAGESGCGKTTTAKI 55
Query: 66 VVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPL 125
++ L EPT+G++ +G + E + ++VQ + Q+PFS+ NP ++ D L + +
Sbjct: 56 LLGLEEPTNGEVLYDGIKLKDFVENE--MHFLKKVQTVQQNPFSTFNPFRKVEDYLFKTV 113
Query: 126 LIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFI 185
L + T+ E LI + L +V + +E GR+P SGGQ QR++IARAL+ NP+F+
Sbjct: 114 LRFKMANTKDEALRLIEEKLSVVGLNF-DEIKGRYPSEFSGGQLQRISIARALLTNPSFL 172
Query: 186 VADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEM 245
VADEPVSM+D S+R I+ L ++LKE+ G++ LYITHDLSTA Y AD +A+M+ G IVEM
Sbjct: 173 VADEPVSMIDASLRISIVNLFRDLKERFGISILYITHDLSTAYYVADKLAIMFRGSIVEM 232
Query: 246 GPAKEVIDNPLHPYTRALLAAVPEPIPE 273
G A++++D P HPYT+ L +++P P PE
Sbjct: 233 GRAQDILDTPFHPYTKLLKSSIPVPDPE 260
>sp|Q07734|OPPF_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075750|pir||B53290 oligopeptide transport protein
oppF - Lactococcus lactis subsp. lactis
>gi|308851|gb|AAA16164.1| (L18760) ATP binding protein
[Lactococcus lactis] >gi|495178|gb|AAB00534.1| (U09553)
ATP binding protein [Lactococcus lactis]
Length = 319
Score = 224 bits (564), Expect = 2e-57
Identities = 114/264 (43%), Positives = 177/264 (66%), Gaps = 8/264 (3%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
IL +++LK Y+PIR GF + V AVDG+ +++ + LVGESG GK+T GK
Sbjct: 4 ILNLKDLKVYYPIRSGFFNRVTDN----VLAVDGVDLTIHEGETVGLVGESGSGKSTIGK 59
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
+V L + T G++ +GQDV++ + + ++K Y + VQMIFQD FSS+NPR IYD++ EP
Sbjct: 60 TIVGLEQMTSGQLIYKGQDVSKKKIRNQLK-YNKDVQMIFQDAFSSLNPRKTIYDIIAEP 118
Query: 125 LLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTF 184
+ + E + I++ L++V + P++ + ++P SGGQ+QR+ IARA+ NP
Sbjct: 119 IRNFEKIDANTENKR-IHELLDIVGL--PKQALEQYPFQFSGGQQQRIGIARAVATNPKL 175
Query: 185 IVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVE 244
IVADEPVS LD+S++A++L MK +++ +G+ +L+I+HDL R+ D IAVM+ GRIVE
Sbjct: 176 IVADEPVSALDLSVQAQVLNFMKLIQKDLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVE 235
Query: 245 MGPAKEVIDNPLHPYTRALLAAVP 268
G +++ D P H YT+ LL+A+P
Sbjct: 236 KGTRRDIFDEPQHIYTKRLLSAIP 259
>emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 307
Score = 224 bits (564), Expect = 2e-57
Identities = 120/302 (39%), Positives = 192/302 (62%), Gaps = 20/302 (6%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+E +++V++L+ F GE ++ AV +F + K + F+LVGESG GKT
Sbjct: 1 MSEKLVEVKDLEISF-----------GEGKKKFGAVKNANFFIKKGETFSLVGESGSGKT 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T G+ ++ L + + G+I +G+ + ++K E R++QMIFQDP +S+N R + +
Sbjct: 50 TIGRAIIGLNDTSSGQILYDGKVINGRKSKSEANELIRKIQMIFQDPAASLNERATVDYI 109
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E L + +T ER+E I + V + E++ R+PH SGGQRQR+ IARAL++
Sbjct: 110 ISEGLYNFNLFKTEEERKEKIKNMMAEVGLL--SEHLTRYPHEFSGGQRQRIGIARALVM 167
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NP F++ADEP+S LDVS+RA++L L+K ++ + G+TYL+I HDLS R+ +D IAV++ G
Sbjct: 168 NPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKG 227
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIP---ERKDVIKELPIKGEV----PSAVNI 293
IVE+ +E+ +NP+HPYT++LL+AVP P P +K+++ P + + PS V I
Sbjct: 228 VIVEVAETEELFNNPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEI 287
Query: 294 PP 295
P
Sbjct: 288 KP 289
>pir||A72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981009|gb|AAD35583.1|AE001726_17 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 333
Score = 223 bits (563), Expect = 2e-57
Identities = 127/329 (38%), Positives = 194/329 (58%), Gaps = 20/329 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+V+NL +F + G V+AV+ +SF + +V +VGE+G GK+ T K
Sbjct: 7 LLEVKNLSTWFYMEEGI-----------VKAVNDVSFSLNSNEVLGIVGETGSGKSVTVK 55
Query: 65 LVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
+++L++P G+I +GQD+ ++ KE + + + MIFQDP S+NP + I D
Sbjct: 56 SIMRLIKPPGKIVSGEIIYKGQDILKIPEKEMHRIRGKEIAMIFQDPMMSLNPLYTIGDQ 115
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
L E + H +G + + LE+V I PE+ + +P SGG RQRV IA AL
Sbjct: 116 LMETIRYH-LGYDKRRAYLRAVEMLELVGIPEPEKRMNNYPFEFSGGMRQRVVIAIALSC 174
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NP+ ++ADEP + LDV+I+A+ILELMKEL+++ ++ITHDL AD I VMY G
Sbjct: 175 NPSVLIADEPTTALDVTIQAQILELMKELQKEFKTGLIFITHDLGVIASMADRIMVMYGG 234
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH 300
R VE+G + ++ +P HPYT+ LL +VP + +R + ++ +P G+ P V+IPP C F
Sbjct: 235 RQVEIGTSDQIFYSPRHPYTKMLLRSVPR-VDKRLEKLESIP--GQPPRMVDIPPVCPFL 291
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
PRC + C + P+L E NH+V C
Sbjct: 292 PRCPR-RVERCLKELPELSEIEENHYVRC 319
>gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus pyogenes]
Length = 307
Score = 223 bits (563), Expect = 2e-57
Identities = 120/302 (39%), Positives = 192/302 (62%), Gaps = 20/302 (6%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+E +++V++L+ F GE ++ AV +F + K + F+LVGESG GKT
Sbjct: 1 MSEKLVEVKDLEISF-----------GEGKKKFVAVKNANFFIKKGETFSLVGESGSGKT 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T G+ ++ L + + G+I +G+ + ++K E R++QMIFQDP +S+N R + +
Sbjct: 50 TIGRAIIGLNDTSSGQILYDGKVINGRKSKSEANELIRKIQMIFQDPAASLNERATVDYI 109
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E L + +T ER+E I + V + E++ R+PH SGGQRQR+ IARAL++
Sbjct: 110 ISEGLYNFNLFKTEEERKEKIKNMMAEVGLL--SEHLTRYPHEFSGGQRQRIGIARALVM 167
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NP F++ADEP+S LDVS+RA++L L+K ++ + G+TYL+I HDLS R+ +D IAV++ G
Sbjct: 168 NPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKG 227
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIP---ERKDVIKELPIKGEV----PSAVNI 293
IVE+ +E+ +NP+HPYT++LL+AVP P P +K+++ P + + PS V I
Sbjct: 228 VIVEVAETEELFNNPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEI 287
Query: 294 PP 295
P
Sbjct: 288 KP 289
>emb|CAC16447.1| (AL450165) putative oligopeptide ABC transporter ATP-binding
protein [Streptomyces coelicolor]
Length = 316
Score = 222 bits (561), Expect = 3e-57
Identities = 121/277 (43%), Positives = 177/277 (63%), Gaps = 19/277 (6%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A P+L+++ L+K F R +A VD +S EV + + ALVGESGCGKTT
Sbjct: 22 AGPLLELDGLRKEFGGRHPNVA------------VDDVSLEVREGETMALVGESGCGKTT 69
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
+L++ LLEPT G + +GQD+ L T +++ RR++Q++ QDP+SSMNPR RI D++
Sbjct: 70 LTRLLLGLLEPTAGSVRFDGQDLAAL-TASQLRGVRRQMQVVLQDPYSSMNPRMRITDIV 128
Query: 122 EEPLLIHGIG----ETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
EPL+ H RA + + + LE V + + R+PH SGGQRQRV+IARA
Sbjct: 129 AEPLVTHDPEARGRRARARNRQRVGELLEAVGLDAGIQ--DRYPHEFSGGQRQRVSIARA 186
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L L+P +V DEP S LDVS++A +L+L+ +L++++G+TY++++H+L+ AD +AVM
Sbjct: 187 LALHPRLLVLDEPTSALDVSVQATVLDLLADLQQRLGLTYVFVSHNLAVVAQVADRVAVM 246
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPER 274
G +VE+G A V+ P HPYTR LL AVP P R
Sbjct: 247 SRGSLVEVGEAAAVLRTPRHPYTRQLLDAVPVLDPRR 283
>sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
>gi|2119773|pir||I40543 oligopeptide transport
ATP-binding protein appD - Bacillus subtilis
>gi|677943|gb|AAA62356.1| (U20909) AppD [Bacillus
subtilis] >gi|2633490|emb|CAB12993.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 328
Score = 222 bits (560), Expect = 4e-57
Identities = 130/330 (39%), Positives = 186/330 (55%), Gaps = 21/330 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+V NLK YF ++ EP + AVDG+ F + K + ALVGESG GK+ T
Sbjct: 4 LLEVNNLKTYFFRKK--------EP---IPAVDGVDFHISKGETVALVGESGSGKSITSL 52
Query: 65 LVVKLLEPT-----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYD 119
++ L++ + DG I LE +D+T + K V MIFQ+P +S+NP I +
Sbjct: 53 SIMGLVQSSGGKIMDGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMTSLNPVLTIGE 112
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+ E L+ H + + R+ + + L+MV + E+ + +PH LSGG RQRV IA AL
Sbjct: 113 QITEVLIYHKNMKKKEARQRAV-ELLQMVGFSRAEQIMKEYPHRLSGGMRQRVMIAIALS 171
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
NP ++ADEP + LDV+I+A++LELMK+L +K + L ITHDL AD + VMY
Sbjct: 172 CNPKLLIADEPTTALDVTIQAQVLELMKDLCQKFNTSILLITHDLGVVSEAADRVIVMYC 231
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
G++VE ++ PLHPYT LL ++P E + K IKG VP+ N+PPGCRF
Sbjct: 232 GQVVENATVDDLFLEPLHPYTEGLLTSIPVIDGE---IDKLNAIKGSVPTPDNLPPGCRF 288
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
PRC C T +P L+ + V C
Sbjct: 289 APRCPK-AMDKCWTNQPSLLTHKSGRTVRC 317
>pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654573|gb|AAF93346.1| (AE004107) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 571
Score = 220 bits (554), Expect = 2e-56
Identities = 102/266 (38%), Positives = 175/266 (65%), Gaps = 6/266 (2%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+LKVEN+ F + S R ++V+A + +SF V++ + F LVGESG GK+T
Sbjct: 301 PLLKVENVNLRFVTKDSLFESRR----EYVQASNNVSFAVHEGETFGLVGESGSGKSTIA 356
Query: 64 KLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEE 123
+++ L +P G++ EG D+T L+++ E + RR++QM+FQ+P++SMNPR +I+D++ E
Sbjct: 357 RVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAE 416
Query: 124 PLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
P+ H + + +E +++ LE V + ++PH SGGQRQR++IARAL P
Sbjct: 417 PIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALATRPR 474
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
++ DEP S LDVS++A+IL L+K+L++++ +T L+I+HDL R D + VM +G ++
Sbjct: 475 LLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLL 534
Query: 244 EMGPAKEVIDNPLHPYTRALLAAVPE 269
E+ P +++ +P H Y++ L++ +PE
Sbjct: 535 EVAPTEQLFTDPQHEYSKKLISLMPE 560
Score = 183 bits (461), Expect = 2e-45
Identities = 110/298 (36%), Positives = 166/298 (54%), Gaps = 26/298 (8%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+V+NL+ +P R G A AV ++ ++ + ++ +VGESG GK+T G
Sbjct: 3 LLEVKNLRIEYPSRHGVHA-----------AVKSLTLDIQRGEIVGVVGESGAGKSTVGN 51
Query: 65 LVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
V+ LL P G++YL G+ ++ L + + ++ IFQDP +S+NP F +
Sbjct: 52 AVIDLLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQ 111
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVK---ITPPEEYVGRFPHMLSGGQRQRVAIARA 177
L E IH + AE E +AL ++K I PE + ++PH SGG RQRV IA A
Sbjct: 112 LTET--IHANMQVSAE--EAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIA 167
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L P I+ADEP + LDVSI+ +IL L++EL +K V + +THD+ D +AVM
Sbjct: 168 LAGEPDLIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVM 227
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPP 295
Y G +VE GP +V+ P HPYTR+L++AVP +RK + P+ + A + P
Sbjct: 228 YRGDLVEFGPTAKVLGTPEHPYTRSLISAVPR--SDRK--LDRFPLVSYIEEAKELKP 281
>gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1]
Length = 610
Score = 220 bits (554), Expect = 2e-56
Identities = 121/270 (44%), Positives = 173/270 (63%), Gaps = 10/270 (3%)
Query: 4 PILKVENLKKYFPI-RRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
PIL + N+ K+FP+ RG + G ++AV G+ +V +VGESG GKTT
Sbjct: 309 PILSMRNVGKHFPVYSRGVIRGRVG----VIKAVAGVDLDVEAGTTLGIVGESGSGKTTL 364
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
+ + L T G I +GQDV ++ ++ + R+ VQM+FQDP++S++P + D+L
Sbjct: 365 IRSLFNLEPITHGTILFDGQDVHRMPPRDR-RRMRKCVQMVFQDPYASLDPMMTVRDILM 423
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
EP +I+ + AER + + LE V + P E+ R+P+ SGGQRQR+AIARAL+L P
Sbjct: 424 EPAVINRMDRKLAERR--VMELLERVHLKP--EHAARYPNEFSGGQRQRIAIARALMLYP 479
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
+V DEPVS LDVSI+AE+L L+KEL++ + ++YL+++HDLS A + VMY GRI
Sbjct: 480 RLLVLDEPVSSLDVSIQAEVLTLLKELQKDLNLSYLFVSHDLSVVAEIAHSVIVMYRGRI 539
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIP 272
VE G E+ NP HPYTRALL+AVP P P
Sbjct: 540 VERGRVDELFRNPKHPYTRALLSAVPIPDP 569
Score = 145 bits (361), Expect = 1e-33
Identities = 89/254 (35%), Positives = 133/254 (52%), Gaps = 8/254 (3%)
Query: 20 GFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTD---GK 76
G S ++ + AV +S+ + +V ALVGESG GK+ + V+ LL G
Sbjct: 24 GLTVSFDRHREEPIEAVRDVSWSIGSGEVLALVGESGSGKSVSALAVMGLLPRNARVAGS 83
Query: 77 IYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAE 136
I G+++ K R+ ++ QDP +S+NP + I + E + H + +E
Sbjct: 84 IRWRGEELLGASEKRRRALRGSRIGLVPQDPMTSLNPVYTIGAQIREGIRAH---QKLSE 140
Query: 137 RE--ELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSML 194
RE E + LE + I E + +PH LSGG RQRV IA A+ NP I+ADE + L
Sbjct: 141 REMAERTLELLETMGIPHARERMNSYPHELSGGMRQRVVIAMAMANNPDLIIADEATTAL 200
Query: 195 DVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDN 254
DV+++A++L+ +K+ + G L ITHDL AD +AVM G +VE G E+
Sbjct: 201 DVTVQAQVLDALKKAQALTGAALLLITHDLGVVAGRADRVAVMQRGEVVEQGTVDEIFYQ 260
Query: 255 PLHPYTRALLAAVP 268
P YTR LL ++P
Sbjct: 261 PASSYTRKLLHSIP 274
>pir||H70788 probable peptidetransport system ABC-transporter ATP-binding
protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960087|emb|CAA17985.1| (AL022121) dppD
[Mycobacterium tuberculosis]
Length = 548
Score = 218 bits (550), Expect = 7e-56
Identities = 110/245 (44%), Positives = 164/245 (66%), Gaps = 5/245 (2%)
Query: 26 RGEPQQFV--RAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDGKIYLEGQD 83
RG P + V RAVDG+SF + + A+VGESG GK+T ++V+ LL+PT G + +G
Sbjct: 295 RGAPWRRVESRAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQPTSGTVVFDGTY 354
Query: 84 VTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYK 143
++++ A+RRRVQ +FQ+P+SS++P + ++ +EEPL +H +G+ R +R+ + +
Sbjct: 355 DVGALARDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGDRR-QRQRAVRE 413
Query: 144 ALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEIL 203
++ V + P +GR P LSGGQRQRVAIARAL L P +V DE VS LDV ++A+IL
Sbjct: 414 LVDQVAL--PSSILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQIL 471
Query: 204 ELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRAL 263
+L+ +L+ +G+TYL+I+HDL+ R AD + VM GR+VE +EV P H YTR L
Sbjct: 472 DLLADLQADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQL 531
Query: 264 LAAVP 268
L A+P
Sbjct: 532 LQAIP 536
Score = 148 bits (369), Expect = 1e-34
Identities = 85/238 (35%), Positives = 133/238 (55%), Gaps = 7/238 (2%)
Query: 35 AVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP----TDGKIYLEGQDVTQLRTK 90
AV G+ V Q A+VGESG GK+TT ++ LL T G++ +G+D+T K
Sbjct: 24 AVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPAGGRITAGRVVFDGRDITGADAK 83
Query: 91 EEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKI 150
R + + QDP +++NP +++ + E L + G RA R + + L +
Sbjct: 84 RLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEALRANTDG--RAARRRAV-ELLAEAGL 140
Query: 151 TPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELK 210
P + GR+PH LSGG QR IA L P ++ADEP S LDV+++ ++L+ ++ L
Sbjct: 141 PDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEPTSALDVTVQRQVLDHLQGLT 200
Query: 211 EKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVP 268
+++G L ITHDL+ A A+ + V+ G +VE G A+ ++ +P H YTR L+AA P
Sbjct: 201 DELGTALLLITHDLALAAQRAEAVVVVRRGVVVESGAAQSILQSPQHEYTRRLVAAAP 258
>pir||T34759 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402246|emb|CAA20182.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 365
Score = 218 bits (550), Expect = 7e-56
Identities = 122/337 (36%), Positives = 186/337 (54%), Gaps = 26/337 (7%)
Query: 6 LKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKL 65
L+V +LK +FP G V++VDG+SF++ K + +VGESG GK+ T
Sbjct: 25 LEVRDLKVHFPTDDGL-----------VKSVDGLSFQLEKGKTLGIVGESGSGKSVTSLG 73
Query: 66 VV---------KLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFR 116
++ K G+I+L+G ++ K R + MIFQDP S+++P +
Sbjct: 74 IMGLHTAGQYGKRKARISGEIWLDGTELLSADPDHVRKLRGREMAMIFQDPLSALHPYYT 133
Query: 117 IYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIAR 176
I + E IH + + + + + L+ V I P++ V +PH SGG RQR IA
Sbjct: 134 IGQQIVEAYRIHHKVDKKTAKRRAV-EMLDRVGIPQPDKRVDSYPHEFSGGMRQRAMIAM 192
Query: 177 ALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAV 236
+L+ NP ++ADEP + LDV+++A+IL+L+++L+++ G + ITHDL AD + V
Sbjct: 193 SLVNNPELLIADEPTTALDVTVQAQILDLIRDLQKEFGSAVIVITHDLGVVAELADDLLV 252
Query: 237 MYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPG 296
MY GR VE GPA++V P HPYT LL ++P +R + +P+KG PS +N+P G
Sbjct: 253 MYGGRCVERGPAEKVFYEPRHPYTWGLLGSMPR--LDRDQQERLIPVKGSPPSLINLPSG 310
Query: 297 CRFHPRCVYF---KKGLCDTKEPKLIEYSHNHWVECH 330
C F+PRC Y K + T P+L E HW CH
Sbjct: 311 CAFNPRCPYADVPKDDVTRTVRPELTEVGSKHWAACH 347
>emb|CAC12447.1| (AL445067) probable dipeptide transport system, ATP-binding protein
dppF [Thermoplasma acidophilum]
Length = 248
Score = 218 bits (549), Expect = 9e-56
Identities = 108/240 (45%), Positives = 160/240 (66%), Gaps = 4/240 (1%)
Query: 31 QFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTK 90
Q + A++ ++ +Y++++ LVG SG GK+T +++V L P+ GK+ EG+DVT R
Sbjct: 9 QDITALNNVNITLYQKEILGLVGASGSGKSTLARVLVLLYRPSTGKVVFEGRDVTNYRGM 68
Query: 91 EEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKI 150
+ ++ YR VQM+FQDP++S++P I + PL IH R +E I + LEMVK+
Sbjct: 69 K-LREYRSDVQMVFQDPYASLDPYHTISWHIRRPLRIH---HYRGNIDERIDELLEMVKL 124
Query: 151 TPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELK 210
PP + +FPH +SGGQRQRV +ARAL L P ++ADEPVSMLDVS+R +ILEL+ ++
Sbjct: 125 DPPSYFRDKFPHQISGGQRQRVYLARALALEPKVLIADEPVSMLDVSLRIDILELLSRIR 184
Query: 211 EKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEP 270
E +G++ +YITHDL+T D I V++ G IVE G +V+ NP YTR+L+ A P+P
Sbjct: 185 EDLGISIIYITHDLNTVSMITDRIYVLHNGEIVEEGQTDDVLSNPRDDYTRSLIEAAPDP 244
>sp|P77622|YDDO_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDO
>gi|7445738|pir||F64901 ABC-type transport protein b1483
- Escherichia coli >gi|1742423|dbj|BAA15138.1| (D90789)
Dipeptide transport ATP-binding protein DppF.
[Escherichia coli] >gi|1742434|dbj|BAA15148.1| (D90790)
Dipeptide transport ATP-binding protein DppF.
[Escherichia coli] >gi|1787758|gb|AAC74556.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 308
Score = 217 bits (548), Expect = 1e-55
Identities = 121/318 (38%), Positives = 190/318 (59%), Gaps = 30/318 (9%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M++ +L + ++ FP R+ +L G+ + V A++GI ++ + + +VGESGCGK+
Sbjct: 1 MSDTLLTLRDVHINFPARKNWL----GKTTEHVHAINGIDLQIRRGETLGIVGESGCGKS 56
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T +L++ +L+P+ G+ G +R +QM+FQDP SS+NPR ++ +
Sbjct: 57 TLAQLLMGMLQPSHGQYIRSGS--------------QRIMQMVFQDPLSSLNPRLPVWRI 102
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ EPL I + +R L + V I P EY+ R PH SGGQRQR+AIARAL
Sbjct: 103 ITEPLWI-AKRSSEQQRRALAEELAVQVGIRP--EYLDRLPHAFSGGQRQRIAIARALSS 159
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P IV DEP S LD+S++A+IL L+ L+E G+TY+ I+H++S R+ +D +AVMYLG
Sbjct: 160 QPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLG 219
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVP---EPIPERKDVIKELPIKGEVPSAVNIPPGC 297
+IVE+G A++V+ P HPYTR LL ++P +P+ E + K ++P +P GC
Sbjct: 220 QIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKT-----DLPGNRTLPQGC 274
Query: 298 RFHPRCVYFKKGLCDTKE 315
F+ RC G C+ ++
Sbjct: 275 FFYERCPLATHG-CEVRQ 291
>pir||E72536 probable oligopeptide transport ATP-binding protein APE1578 -
Aeropyrum pernix (strain K1) >gi|5105265|dbj|BAA80578.1|
(AP000062) 324aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 324
Score = 217 bits (548), Expect = 1e-55
Identities = 131/336 (38%), Positives = 188/336 (54%), Gaps = 27/336 (8%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
MA+ +L VE+LK YF RG V+AVDG+SF + + +V + GESG GK+
Sbjct: 1 MAQELLVVEDLKTYFYTLRGI-----------VKAVDGVSFTLRRGEVLGIAGESGSGKS 49
Query: 61 TTGKLVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRF 115
T ++ L+ P G+I ++G DVT + E + R ++V M+FQ + + P +
Sbjct: 50 TLAWSILGLVPPPGRIVGGRIMIDGMDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVY 109
Query: 116 RIYDVLEEPLLIH-GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAI 174
+ +EE L IH G+G R E + +Y+ LE V + R+PH LSGGQ+QRV I
Sbjct: 110 TVGRQIEEVLQIHRGVG--RHEARQRVYELLESVGLH--RSIADRYPHELSGGQKQRVVI 165
Query: 175 ARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWI 234
A AL L P ++ADEP + LDV ++A+IL L+K+L + ++ + ITHDLS A+ +
Sbjct: 166 AMALALEPDIVIADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETV 225
Query: 235 AVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIP 294
+MY G+I E GP+ V P HPYT+ALL A+P+ R + + I G P N P
Sbjct: 226 MIMYGGKIAEYGPSDAVFTKPQHPYTQALLKAIPK---LRGPIDRLAYIPGSPPDLRNPP 282
Query: 295 PGCRFHPRC-VYFKKGLCDTKEPKLIEYSHNHWVEC 329
PGCRFHPRC F + C +EP L H C
Sbjct: 283 PGCRFHPRCPKAFDR--CSREEPPLFRVGDGHLSAC 316
>dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 347
Score = 217 bits (548), Expect = 1e-55
Identities = 131/341 (38%), Positives = 202/341 (58%), Gaps = 36/341 (10%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
AE IL+V +L+ F F + V+AVDG++F V K + +VGESG GK+
Sbjct: 9 AETILEVRDLRTSF-----FTEAFE------VKAVDGVTFSVPKGKTLGIVGESGSGKSI 57
Query: 62 TGKLVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYRRRVQ-----MIFQDPFSSMN 112
T ++KL++ G+I +G+++ TK E AY R+++ MIFQ+P +S+N
Sbjct: 58 TSLSILKLIQEPGKVVGGEINFKGENLV---TKNE--AYMRKIRGNEISMIFQEPMTSLN 112
Query: 113 PRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVK---ITPPEEYVGRFPHMLSGGQR 169
P + + + E IH + ++E + ++++M+K I PE+ V ++PH LSGG R
Sbjct: 113 PVYTVGQQISESFRIH----EKLGKKEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMR 168
Query: 170 QRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARY 229
QRV IA AL NP ++ADEP + LDV+I+A+ILELMK+L++++G++ + ITHDL
Sbjct: 169 QRVMIAMALACNPELLIADEPTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAE 228
Query: 230 FADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELP-IKGEVP 288
D++AVMY G++VE K + NP HPYT LL ++P + +D +EL IKG VP
Sbjct: 229 TCDYVAVMYCGKVVEYADVKTLFKNPRHPYTVGLLNSLPRHDIDLED--EELSVIKGNVP 286
Query: 289 SAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
S ++P GCRF PRC F +C + P L + + + C
Sbjct: 287 SPADMPEGCRFAPRCP-FASDICKERLPDLETDENGNQIRC 326
>emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD) [Thermoplasma
acidophilum]
Length = 321
Score = 216 bits (545), Expect = 3e-55
Identities = 118/303 (38%), Positives = 184/303 (59%), Gaps = 12/303 (3%)
Query: 34 RAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP---TDGKIYLEGQDVTQLRTK 90
+ +D ++ ++ + ++ +LVGES GK+T G+++ ++L P T G++ L+G DV +L K
Sbjct: 20 KVIDDLNLDIDQGELVSLVGESASGKSTLGQVISRMLPPVGITSGEVVLDGVDVLKLSEK 79
Query: 91 EEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHG----IGETRAEREELIYKALE 146
E K V MIFQ+P +S+NP RI + L E L I I T E + + KALE
Sbjct: 80 EMTKIRGTTVFMIFQNPLNSLNPVKRIEEQLMEALAIRNSRMNIQMTFEEARKEVIKALE 139
Query: 147 MVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELM 206
+++ PE+ + R+PH LSGGQ QRV I AL+L P ++ADEP + LDV+I+A++++L+
Sbjct: 140 SLRLPDPEKILIRYPHELSGGQVQRVVICMALLLRPKLLIADEPTTALDVTIQAQVVKLL 199
Query: 207 KELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAA 266
K+L +T ++ITHD+ A +D + V Y GR++E G E++ NPLHPYT LLA+
Sbjct: 200 KDLNRDTKMTIIFITHDVGLAYVLSDRMLVFYAGRVMEQGQTVEIVKNPLHPYTSGLLAS 259
Query: 267 VPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHW 326
+P P+ + +P G PS +++P GC+F PRC F C +EP I+ N
Sbjct: 260 IPSS-PKHSGKLYSIP--GYPPSYLSLPKGCKFAPRC-RFAFERCFEEEPSYIK-KDNRL 314
Query: 327 VEC 329
+ C
Sbjct: 315 IRC 317
>pir||E72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980511|gb|AAD35121.1|AE001690_15 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 268
Score = 214 bits (540), Expect = 1e-54
Identities = 115/274 (41%), Positives = 178/274 (63%), Gaps = 11/274 (4%)
Query: 6 LKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKL 65
L V+NL K F + GF + R + AV +SFEV ++++ +LVGESG GKTTT K+
Sbjct: 4 LVVKNLTKIFSL--GFFSKRR------IEAVKNVSFEVKEKEIVSLVGESGSGKTTTAKM 55
Query: 66 VVKLLEPTDGKIYLEGQDVTQ-LRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEP 124
+++LL PT G+IY EG+D+ + ++ +E + +RR+V +FQDPF+S NP + + L +
Sbjct: 56 ILRLLPPTSGEIYFEGKDIWKDIKDRESLVEFRRKVHAVFQDPFASYNPFYPVERTLWQA 115
Query: 125 L-LIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
+ L+ + E ELI ++L V I P ++ +G++PH +SGGQ+QR+ IAR IL P
Sbjct: 116 ISLLENKPSNKKEALELIKESLFRVGIDP-KDVLGKYPHQISGGQKQRIMIARCWILRPL 174
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
IVADEP SM+D S R I++L++EL+E+ G + ++ITHDL A Y +D I VM G IV
Sbjct: 175 LIVADEPTSMIDASSRGGIIKLLEELREEQGTSIIFITHDLGLAYYVSDNIFVMKNGEIV 234
Query: 244 EMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDV 277
E G +V+ P H YT+ L+ ++P+ + +D+
Sbjct: 235 ERGHPDKVVLEPTHEYTKLLVGSIPKLYRKLEDL 268
>sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TR
>gi|1486422|emb|CAA92400.1| (Z68203) OppD homologue
[Rhizobium sp.] >gi|2182648|gb|AAB91871.1| (AE000098)
Y4tR [Rhizobium sp. NGR234]
Length = 335
Score = 214 bits (539), Expect = 1e-54
Identities = 126/342 (36%), Positives = 189/342 (54%), Gaps = 26/342 (7%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A+ +L V +L+ +F GE + RA+ G++F V ++ +VGESGCGK+
Sbjct: 9 ADLLLDVRDLETHF----------YGE-ESVTRALGGVNFHVKSGEMLGIVGESGCGKSV 57
Query: 62 TGKLVVKLL-----EPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFR 116
T +++LL + G++ +G+++ +L ++ + R+ MIFQDP +S++P
Sbjct: 58 TALSILRLLPKQTAKTVGGEVIFKGRNLLELSERQMREVRGNRIAMIFQDPMTSLSPVHT 117
Query: 117 IYDVLEEPLLIHGIGETRAEREELIYKALEM---VKITPPEEYVGRFPHMLSGGQRQRVA 173
+ + E + IHG R R E + KALEM V+I PE + +PH +SGG RQR
Sbjct: 118 VGRQIAEAVQIHG----RVSRAEALEKALEMLRLVRIADPERRLNNYPHEMSGGMRQRAM 173
Query: 174 IARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADW 233
IA AL +P ++ADEP + LDV+I+A+IL L+ +LK++MG ++ITHDL
Sbjct: 174 IAMALACSPELLIADEPTTALDVTIQAQILRLIVDLKDRMGTAVMFITHDLGVVAETCQR 233
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNI 293
+ VMY GRIVE ++ P HPYTRAL+ +VP+ R+ + E+P G VPS
Sbjct: 234 VIVMYAGRIVEQASVTDLFARPTHPYTRALMNSVPDRRRGRQSRLPEIP--GVVPSLREP 291
Query: 294 PPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGEI 335
GC F RC F G+C K P L E H C R E+
Sbjct: 292 LVGCSFAERCP-FAIGVCREKMPVLSEIQPGHAAACWRSNEV 332
>pir||S75333 oligopeptide transport protein oppF - Synechocystis sp. (strain
PCC 6803) >gi|1652324|dbj|BAA17247.1| (D90904)
oligopeptide transport ATP-binding protein OppF
[Synechocystis sp.]
Length = 650
Score = 214 bits (539), Expect = 1e-54
Identities = 112/267 (41%), Positives = 177/267 (65%), Gaps = 10/267 (3%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+L+V+NL + L G+ F +AV+ +SF+VY + LVGESGCGK+T
Sbjct: 380 PLLEVQNLTVSYG-----QGGLFGKKSVF-KAVNDVSFQVYPGETLGLVGESGCGKSTLA 433
Query: 64 KLVVKLLEPTDGKIYLEGQDVTQLRTK-EEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
+ +++L G+I +GQ+V L K ++ + RR +Q+IFQ+P++S+NPR I ++
Sbjct: 434 RALLRLTPIQTGRIIFDGQNVAALPEKSQQWRRLRREMQIIFQNPYNSLNPRMTIGRAIQ 493
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
EPL+IH ++ ++ + + + LE V I+P ++ R+PH LSGGQRQR+ IARAL LNP
Sbjct: 494 EPLIIHEPKQSTKQQRQRVAELLERVGISP--QWFNRYPHELSGGQRQRICIARALALNP 551
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
FI+ DE VS LDVS++A++L L+KEL+ + +TY++I+HDLS R+ D I VM G++
Sbjct: 552 RFIICDESVSALDVSVQAQVLNLLKELQRDLQLTYIFISHDLSVVRFMGDRIMVMNRGQL 611
Query: 243 VE-MGPAKEVIDNPLHPYTRALLAAVP 268
E + A+E+I+NP YT+ L+ ++P
Sbjct: 612 AEPINTAQEIIENPQSAYTKKLIQSIP 638
Score = 150 bits (376), Expect = 2e-35
Identities = 107/340 (31%), Positives = 171/340 (49%), Gaps = 60/340 (17%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M + IL V L+ FP + ++ + AV G+ FE+ + ++ +VGESG GK+
Sbjct: 34 MNDLILAVRQLEIAFP---------DADTREKLLAVKGVDFELERGEILGIVGESGSGKS 84
Query: 61 TTGKLVVKLL------EPT---DGKIYLEGQDVTQLRTKEEIKAYRR--RVQMIFQDPFS 109
T ++ L+ EP+ D + V + E K R ++ MIFQ+P S
Sbjct: 85 VTSLGIMGLVPKPGWVEPSSEIDFFAQAQSSPVNLVALPEGDKRQYRGGKIAMIFQEPMS 144
Query: 110 SMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEE-------------- 155
S+NP + I + E + +H T+ E + L+ V++ P +E
Sbjct: 145 SLNPVYTIGFQIIEAIRLHQ-NVTQEEAQNQAIALLQEVRVLPKDEVLEEEFLAQEQAQP 203
Query: 156 ------------------YVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVS 197
++ R+PH LSGGQ QRV IA A+ NP ++ADEP + LDV+
Sbjct: 204 RGKVTQNLASYIQQRKQSFLKRYPHELSGGQLQRVMIAMAISANPRLLIADEPTTALDVT 263
Query: 198 IRAEILELMKEL-KEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPL 256
++AEIL L+++L K+ ++ ++I+HDL AD +AVMY G IVE G ++++ +P
Sbjct: 264 VQAEILRLLRDLCKQHQEMSLIFISHDLGVINEIADRVAVMYRGEIVEQGLKEQILHSPQ 323
Query: 257 HPYTRALLAAVPEPIPERKDV-IKELPIKGEVPSAVNIPP 295
HPYT+ LLA P R ++ + LP G+ +A PP
Sbjct: 324 HPYTKGLLACRP-----RLEIQLDHLPTVGDFLNADGPPP 358
>dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 340
Score = 214 bits (539), Expect = 1e-54
Identities = 127/330 (38%), Positives = 188/330 (56%), Gaps = 21/330 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L++ NL F I+ F A AVD ++ V K +V A+VGESG GK+
Sbjct: 6 LLQIRNLTTAFQIKDDFYA-----------AVDNVTLNVNKNEVLAIVGESGSGKSALAN 54
Query: 65 LVVKLLEPT----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
++ L P +G+I +G+++ +L + K ++ MIFQDP +++NP I +
Sbjct: 55 TIMGLHNPERTKIEGEINFKGENLVKLPVSKLNKIRGDKLSMIFQDPLTALNPLMIIGEQ 114
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E LL+H T+AER++ + L +V I PE ++PH LSGG RQRV IA A+
Sbjct: 115 IGEALLLHR-SLTKAERKKKVIDLLNLVGIPRPESTYEQYPHELSGGMRQRVMIAAAIAC 173
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P F++ADEP + LDV+I+A+IL+L+++LKEK+ + ITHDL AD +AVMY G
Sbjct: 174 EPEFLIADEPTTALDVTIQAQILDLIRDLKEKIHAGIILITHDLGVVAEMADRVAVMYAG 233
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIP-PGCRF 299
+IVE+ + + PLHPYTR+LL +VP E D K I+G VP+ N+P GCRF
Sbjct: 234 QIVEIADVFTLFERPLHPYTRSLLNSVPS---ESNDQEKLHVIQGIVPALQNLPRKGCRF 290
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
R + + P+L E H+V C
Sbjct: 291 KDRIPWLSES-AHEDHPELHEVEPGHFVRC 319
>pir||B82393 ABC transporter, ATP-binding protein VCA0977 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658417|gb|AAF96873.1| (AE004424) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 539
Score = 213 bits (538), Expect = 2e-54
Identities = 107/265 (40%), Positives = 175/265 (65%), Gaps = 8/265 (3%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A P+LK E+++ F ++ F++ Q+ AV GIS E+ + + +VGESG GK+T
Sbjct: 273 AAPLLKAEDIRVKFLVKPYFIS----RRNQYFEAVKGISLELKQGETLGIVGESGSGKST 328
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
G+ ++ LL P+ G+I +GQD L K+ + A ++ +QM+FQDP+ S++PR + +++
Sbjct: 329 LGRALIGLL-PSTGQIAFKGQDFRALSEKQRL-ALKKDIQMVFQDPYGSLSPRMTVGEII 386
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
E LL+H ++ ER + +ALE V++ P + R+PH SGGQRQR+AIARALIL
Sbjct: 387 TEGLLVHQPHISKLERMQRARRALEEVRLDPNS--INRYPHEFSGGQRQRIAIARALILE 444
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P+FI+ DEP S LD S++ ++EL+KE++++ + YL+I+HDL+ + +D + VM G+
Sbjct: 445 PSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQ 504
Query: 242 IVEMGPAKEVIDNPLHPYTRALLAA 266
++E G A+ + NP H YT+ L+AA
Sbjct: 505 VMEQGSAESIFHNPQHEYTKKLIAA 529
Score = 165 bits (414), Expect = 6e-40
Identities = 92/272 (33%), Positives = 152/272 (55%), Gaps = 19/272 (6%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+L+V NL F G V AV +SF++ + A+VGESG GK+ +
Sbjct: 5 PLLQVRNLSVSFTTNDGV-----------VDAVKNVSFDIRPGETLAIVGESGSGKSVST 53
Query: 64 KLVVKLLEPT-----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIY 118
+++LL + I EG+++ + + R+ MIFQ+P +S+NP R+
Sbjct: 54 NALMQLLPKNARIHPESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVG 113
Query: 119 DVLEEPLLIH-GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
+ E + H + + +A++ L + ++V + P+ +FPH SGGQ QR+ IA A
Sbjct: 114 VQVAEAIRCHRNVSQNQAKQRVL--ELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMA 171
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
LI P ++ADEP + LDV+++AE+L L+KE++ MG+ L+ITHDL ++ AD + VM
Sbjct: 172 LINEPDILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVM 231
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE 269
G +VE G +++ P H YTR L+ ++P+
Sbjct: 232 CKGDVVEQGSTEQLFLQPEHDYTRMLINSIPK 263
>sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN RV1281C
>gi|7445626|pir||A70756 probable ABC-type peptide
transport protein - Mycobacterium tuberculosis (strain
H37RV) >gi|1480305|emb|CAB00901.1| (Z77137) oppD
[Mycobacterium tuberculosis]
Length = 612
Score = 213 bits (537), Expect = 2e-54
Identities = 120/277 (43%), Positives = 176/277 (63%), Gaps = 14/277 (5%)
Query: 2 AEPILKVENLKKYFPIRRGF-LASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
A +++V +L K + + +G L GE VRAVDGIS E+ + + +VGESG GK+
Sbjct: 346 ASVVVRVRHLVKTYRLAKGVVLRRAIGE----VRAVDGISLELRQGRTLGIVGESGSGKS 401
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TT +++L P G I + G DV L T E ++ RR +Q++FQDP +S++PR ++D+
Sbjct: 402 TTLHEILELAAPQSGSIEVLGTDVATLGTAER-RSLRRDIQVVFQDPVASLDPRLPVFDL 460
Query: 121 LEEPLLIHGIG--ETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
+ EPL +G G ET A EL L++V + + R+P SGGQ+QR+ IARAL
Sbjct: 461 IAEPLQANGFGKNETHARVAEL----LDIVGLRHGD--ASRYPAEFSGGQKQRIGIARAL 514
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
L P + DEPVS LDVSI+A I+ L+ +L+E+ G++YL+++HDLS ++ A +AVM
Sbjct: 515 ALQPKILALDEPVSALDVSIQAGIINLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVML 574
Query: 239 LGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERK 275
G +VE G ++EV NP H YTR LL AVP+P P R+
Sbjct: 575 AGTVVEQGDSEEVFGNPKHEYTRRLLGAVPQPDPARR 611
Score = 183 bits (460), Expect = 2e-45
Identities = 111/310 (35%), Positives = 168/310 (53%), Gaps = 13/310 (4%)
Query: 27 GEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP---TDGKIYLEGQD 83
G+P V AV GIS+ V +V A+VGESG GK+ VV LL G + L+G +
Sbjct: 18 GDP---VTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYAQVRGSVRLQGTE 74
Query: 84 VTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHG--IGETRAEREELI 141
+ L + + + +FQDP S++ P + + D + E + +H +G+ A R +
Sbjct: 75 LLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQPRVGKKAARRRAV- 133
Query: 142 YKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAE 201
+ L++V I+ P+ FPH LSGG+RQRV IA A+ +P ++ DEP + LDV+++A+
Sbjct: 134 -ELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQ 192
Query: 202 ILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTR 261
IL+++K ++ G L ITHDL FAD VMY GR+VE ++ + PYT
Sbjct: 193 ILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVNDLYRDRRMPYTV 252
Query: 262 ALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEY 321
LL +VP + + +PI G PS + PGC F PRC C T EP+L++
Sbjct: 253 GLLGSVPR--LDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVIDE-CLTAEPELLDV 309
Query: 322 SHNHWVECHR 331
+ +H C R
Sbjct: 310 ATDHRAACIR 319
>pir||T03432 probable transport protein accC - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153179|gb|AAC17199.1| (AF010180) AccC
[Agrobacterium tumefaciens]
Length = 338
Score = 213 bits (537), Expect = 2e-54
Identities = 123/334 (36%), Positives = 191/334 (56%), Gaps = 15/334 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+ P+L+ + K F ++ G +P V AV+ I E+ ++ +VGESG GK+
Sbjct: 1 MSAPLLQARGVTKVFRLKSGLFV----KPSVHV-AVNSIDLELAPRERVGVVGESGSGKS 55
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T G+L++ L T+G++ EG T R+ + +R+ ++ Q+P S++NP+ I +
Sbjct: 56 TLGRLLLGLTSTTEGEVLFEGLAHTD-RSARDWSTFRKETSLVQQNPLSALNPQMTIGEQ 114
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E + +H + A A + ++ + R+PH +SGGQRQRV IARALIL
Sbjct: 115 IAEAVWVHRVANAGARDRA----ATMLDRVGLSSAMMNRYPHQMSGGQRQRVVIARALIL 170
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
+P +V DE VS LDVS++A+++ L+++L +++ + Y++ITHDL R+ D I VMYLG
Sbjct: 171 DPKLVVFDEAVSALDVSVQAQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLG 230
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH 300
R+VE G K V P HPYTRALLA+VP P +++ E PIKGE+ A + GC F
Sbjct: 231 RVVETGDIKSVYAWPRHPYTRALLASVPTMDPTVRNI--EPPIKGEL-DAGKVMTGCAFR 287
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGE 334
RC + + KE L+ + CHR E
Sbjct: 288 SRCPFAIERC--AKETPLLRPAGGQLAACHRAEE 319
>gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD)
[Archaeoglobus fulgidus] >gi|7445611|pir||A69471
dipeptide ABC transporter, ATP-binding protein (dppD)
homolog - Archaeoglobus fulgidus
>gi|2648781|gb|AAB89480.1| (AE000980) dipeptide ABC
transporter, ATP-binding protein (dppD) [Archaeoglobus
fulgidus]
Length = 313
Score = 212 bits (535), Expect = 4e-54
Identities = 122/303 (40%), Positives = 185/303 (60%), Gaps = 23/303 (7%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L +ENL F RRG VRAVD +S V K + ++VGESGCGK+T
Sbjct: 3 LLDIENLTTIFRTRRGV-----------VRAVDNVSMSVEKGEFISIVGESGCGKSTLAH 51
Query: 65 LVVKLL----EPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
V++L+ E + GKI +G D+ L +E + ++ M+FQDP +S++P +I D
Sbjct: 52 SVMRLIDYPGEISGGKIIFDGVDLLSLGDEEMREIRGSKIGMVFQDPMTSLDPLEKIGDQ 111
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E ++ H + T+ E ++ + LE V + P E V +PH LSGGQRQRV IA A+ L
Sbjct: 112 ISETIMEH-MDVTKKEAWQMAREMLEKVGLQP--ERVDSYPHQLSGGQRQRVMIAMAISL 168
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NP ++ADEP + LDV ++ +I++L++++K + G + ITHD + A +D IAVMY G
Sbjct: 169 NPKLLIADEPTTALDVIVQEKIMDLLEDMKRE-GRAVMLITHDFALAAERSDRIAVMYAG 227
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH 300
+VE+G A+++ + PLHPYT+ L+ +VP+ +++ IK LP G P +N P GCRF
Sbjct: 228 WLVELGKAEKLTNEPLHPYTKGLIQSVPDVWMDKE--IKPLP--GFPPDLINPPEGCRFR 283
Query: 301 PRC 303
PRC
Sbjct: 284 PRC 286
>gi|10954942 Probable accC [Agrobacterium tumefaciens]
>gi|6498295|dbj|BAA87747.1| (AB016260) Probable accC
[Agrobacterium tumefaciens]
Length = 339
Score = 212 bits (534), Expect = 5e-54
Identities = 121/334 (36%), Positives = 192/334 (57%), Gaps = 14/334 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+ P+L+ + K F ++ G +P V AV+ I E+ ++ ++V ESG GK+
Sbjct: 1 MSAPLLQARGVTKVFRLKSGLFV----KPSVHV-AVNSIDLELAPRERVSVVRESGSGKS 55
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T G+L++ L T+G++ EG T R+ + +R+ ++ Q+P S++NP+ I +
Sbjct: 56 TLGRLLLGLTSTTEGEVLFEGLAHTD-RSARDWSTFRKETSLVQQNPLSALNPQMTIGEQ 114
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ E + +H + R+ A + ++ + R+PH +SGGQRQRV IARALIL
Sbjct: 115 IAEAVWVHRVANRAGARDRA---ATMLDRVGLSSAMMNRYPHQMSGGQRQRVVIARALIL 171
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
+P ++ DE VS LDVS++A+++ L+++L +++ + Y++ITHDL R+ D I VMYLG
Sbjct: 172 DPKLVIFDEAVSALDVSVQAQVVALLRQLWQELDLAYVFITHDLRIVRHLVDRIVVMYLG 231
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFH 300
R+VE G K V P HPYTRALLA+VP P +++ E PIKGE+ A + GC F
Sbjct: 232 RVVETGDIKSVYAWPRHPYTRALLASVPTMDPTVRNI--EPPIKGEL-DAGKVMTGCAFR 288
Query: 301 PRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGE 334
RC + + KE L+ + CHR E
Sbjct: 289 SRCPFAIERC--AKETPLLRPAGGQLAACHRAEE 320
>gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T45539 moaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665715|gb|AAB88475.1| (AF242881) moaD
[Agrobacterium tumefaciens]
Length = 588
Score = 210 bits (529), Expect = 2e-53
Identities = 116/272 (42%), Positives = 165/272 (60%), Gaps = 8/272 (2%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
PIL+V +L FP+R G L +++G V AV+ SF + K + LVGESG GK+T G
Sbjct: 285 PILEVRDLTVRFPLRGGLLGNVQGN----VHAVEKASFAIGKGETLGLVGESGSGKSTIG 340
Query: 64 KLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEE 123
K ++ L G I ++G+ + K + RR VQMIFQDPF S++ R I + E
Sbjct: 341 KAIIDLAPRFGGSIVVDGRTIDYADEKS-LAVLRRDVQMIFQDPFGSLDSRQTIGSAIVE 399
Query: 124 PLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
P+ +HGI R RE++ + LE V + P PH SGGQRQR+ IARAL ++P
Sbjct: 400 PMYVHGIASGRELREKMEW-LLEKVGLDPAR--ASSLPHEFSGGQRQRICIARALSMSPK 456
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
I+ADE VS LDV+I+ +I+ELM +L+ + GV+YL+I+HD++ +AVMY G +V
Sbjct: 457 LIIADEAVSALDVAIKGQIIELMMDLQSEFGVSYLFISHDMAAVEKICTRVAVMYFGELV 516
Query: 244 EMGPAKEVIDNPLHPYTRALLAAVPEPIPERK 275
E+G VI P H YT+ LL+AVP P ++
Sbjct: 517 EIGGRDNVIGRPGHSYTKRLLSAVPITHPSQR 548
Score = 164 bits (412), Expect = 1e-39
Identities = 95/266 (35%), Positives = 142/266 (52%), Gaps = 12/266 (4%)
Query: 34 RAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLE----PTDGKIYLEGQDVTQLRT 89
+ V +SF++ A+VGESG GK+ T ++ LL G I L G+++ L
Sbjct: 20 QVVQDLSFDIAPGSTLAVVGESGSGKSVTSLAIMGLLPVGVAKASGSIQLNGRELLSLSE 79
Query: 90 KEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVK 149
E ++ MIFQ+P +S+NP ++ + E + IH G E + + L+ V
Sbjct: 80 SEMCGIRGGKISMIFQEPMTSLNPVQKVGFQIGEAIRIHR-GLRGKELRNAVLEMLKKVG 138
Query: 150 ITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKEL 209
I E + +PH SGG RQRV IA AL NP I+ADEP + LDV+++A+ILEL+K+L
Sbjct: 139 IPDAERRIDNYPHTFSGGMRQRVMIAMALACNPALIIADEPTTALDVTVQAQILELLKQL 198
Query: 210 KEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE 269
+ + V L+ITHD+ AD + VM G++VE GP V P PYT+ L+ A P
Sbjct: 199 QRETNVALLFITHDMGVVAEIADRVLVMRGGQVVESGPVDSVFTRPESPYTKVLIEAAP- 257
Query: 270 PIPERKDVIKELPIKGEVPSAVNIPP 295
V +L G+ +A++ P
Sbjct: 258 ------SVAGKLATTGQPTTAIDALP 277
>gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 324
Score = 209 bits (527), Expect = 3e-53
Identities = 117/306 (38%), Positives = 185/306 (60%), Gaps = 17/306 (5%)
Query: 35 AVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIK 94
A+ +S + + + ++GESG GKTT G+++V L +PT G++ +G ++ + + K K
Sbjct: 27 ALKDVSLSMNQGDLLIVLGESGAGKTTLGRVIVGLQKPTSGEVVYDGYNIWKNKRKI-FK 85
Query: 95 AYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPE 154
YR+ VQ+I QDP+S++ + ++L P+L R+ LI LE+VK+TP E
Sbjct: 86 KYRKDVQLIPQDPYSTLPFNKTVEEILVAPILRWEKINKDELRKRLI-NLLELVKLTPAE 144
Query: 155 EYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMG 214
E++G++PH LSGGQ+QR++IAR+L +NP IVADEPV+M+D S+R IL + E+K ++
Sbjct: 145 EFLGKYPHQLSGGQKQRLSIARSLSVNPRIIVADEPVTMVDASLRIGILNTLAEIKNRLN 204
Query: 215 VTYLYITHDLSTARYFADWI-----AVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE 269
+T ++ITHD+ ARYF VM+ GRIVE +E++ +PLHPYT L+
Sbjct: 205 LTMVFITHDIPIARYFYHLFDKGNTIVMFAGRIVERADLEEILKDPLHPYTNDLIKLT-- 262
Query: 270 PIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
P ++ KE+ +K + + GC + RC F +C +EPKL +YSH V C
Sbjct: 263 --PSIDNLYKEINVK---INYERVEKGCPYRLRCP-FAMDICKNEEPKLFKYSHE--VAC 314
Query: 330 HRVGEI 335
G++
Sbjct: 315 FLYGKV 320
>gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 358
Score = 209 bits (526), Expect = 4e-53
Identities = 118/301 (39%), Positives = 176/301 (58%), Gaps = 9/301 (2%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDG-----KIYLEGQDVTQL 87
V+A+ G++F + K + A+VGESG GK+ T + ++KL+ G +I EG+D+ L
Sbjct: 24 VQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPGYFKRGEILFEGKDLVPL 83
Query: 88 RTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEM 147
KE + + MIFQDP +S+NP ++ + E L H A ++ + + LE+
Sbjct: 84 SEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEKISKEAAKKRAV-ELLEL 142
Query: 148 VKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMK 207
V I PE+ V +FPH SGG RQRV IA AL NP ++ADEP + LDV+I+A+ILELMK
Sbjct: 143 VGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPTTALDVTIQAQILELMK 202
Query: 208 ELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
+L++K+ + ++ITHDL AD +AVMY G+IVE G E+ +P HPYT LLA++
Sbjct: 203 DLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEIFYDPRHPYTWGLLASM 262
Query: 268 PEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWV 327
P ++ + +P G P N P G F R Y K + +EP + + S H+V
Sbjct: 263 PTLESSGEEELTAIP--GTPPDLTNPPKGDAFALRSSYAMK-IDFEQEPPMFKVSDTHYV 319
Query: 328 E 328
+
Sbjct: 320 K 320
>pir||D38447 sporulation initiation protein spo0KD - Bacillus subtilis
>gi|580898|emb|CAA39790.1| (X56347) OppD [Bacillus
subtilis]
Length = 336
Score = 209 bits (526), Expect = 4e-53
Identities = 118/301 (39%), Positives = 176/301 (58%), Gaps = 9/301 (2%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDG-----KIYLEGQDVTQL 87
V+A+ G++F + K + A+VGESG GK+ T + ++KL+ G +I EG+D+ L
Sbjct: 24 VQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPGYFKRGEILFEGKDLVPL 83
Query: 88 RTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEM 147
KE + + MIFQDP +S+NP ++ + E L H A ++ + + LE+
Sbjct: 84 SEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEKISKEAAKKRAV-ELLEL 142
Query: 148 VKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMK 207
V I PE+ V +FPH SGG RQRV IA AL NP ++ADEP + LDV+I+A+ILELMK
Sbjct: 143 VGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPTTALDVTIQAQILELMK 202
Query: 208 ELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
+L++K+ + ++ITHDL AD +AVMY G+IVE G E+ +P HPYT LLA++
Sbjct: 203 DLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEIFYDPRHPYTWGLLASM 262
Query: 268 PEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWV 327
P ++ + +P G P N P G F R Y K + +EP + + S H+V
Sbjct: 263 PTLESSGEEELTAIP--GTPPDLTNPPKGDAFALRSSYAMK-IDFEQEPPMFKVSDTHYV 319
Query: 328 E 328
+
Sbjct: 320 K 320
>sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442529|pir||B69669 oligopeptide transport
ATP-binding protein oppD - Bacillus subtilis
>gi|2633500|emb|CAB13003.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 358
Score = 209 bits (526), Expect = 4e-53
Identities = 118/301 (39%), Positives = 176/301 (58%), Gaps = 9/301 (2%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDG-----KIYLEGQDVTQL 87
V+A+ G++F + K + A+VGESG GK+ T + ++KL+ G +I EG+D+ L
Sbjct: 24 VQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPGYFKRGEILFEGKDLVPL 83
Query: 88 RTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEM 147
KE + + MIFQDP +S+NP ++ + E L H A ++ + + LE+
Sbjct: 84 SEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEKISKEAAKKRAV-ELLEL 142
Query: 148 VKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMK 207
V I PE+ V +FPH SGG RQRV IA AL NP ++ADEP + LDV+I+A+ILELMK
Sbjct: 143 VGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPTTALDVTIQAQILELMK 202
Query: 208 ELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
+L++K+ + ++ITHDL AD +AVMY G+IVE G E+ +P HPYT LLA++
Sbjct: 203 DLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEIFYDPRHPYTWGLLASM 262
Query: 268 PEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWV 327
P ++ + +P G P N P G F R Y K + +EP + + S H+V
Sbjct: 263 PTLESSGEEELTAIP--GTPPDLTNPPKGDAFALRSSYAMK-IDFEQEPPMFKVSDTHYV 319
Query: 328 E 328
+
Sbjct: 320 K 320
>gb|AAK43145.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 267
Score = 208 bits (525), Expect = 6e-53
Identities = 110/272 (40%), Positives = 174/272 (63%), Gaps = 12/272 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M++ ++++ ++ K F +R+G ++ + ++ ++ K ++ +VG SG GKT
Sbjct: 1 MSDKLIELIHVYKDFIVRKGVFG------KEHRPGIWDVNMDIRKNEIVGMVGGSGGGKT 54
Query: 61 TTGKLVVKLLEPTDGKIYLE--GQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIY 118
++V LL+PT G I G DVT+ K+++K YR VQ++FQDP+SS++P +
Sbjct: 55 VIAWMIVGLLKPTKGSIIYTPMGLDVTKAN-KKQLKQYRADVQLVFQDPYSSLDPAHTVK 113
Query: 119 DVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
+E PL I+ + R + EE I + L V +TPPE+++ ++P LSGGQRQRV +AR L
Sbjct: 114 WHIERPLKIY---KYRGDIEERIKELLREVALTPPEDFLNKYPFQLSGGQRQRVYLARVL 170
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
LNP ++ADEPVS +D SIRA +L+L K L+++ G++ +YITHD++T Y AD + V+
Sbjct: 171 ALNPKVLIADEPVSNVDASIRASLLDLFKRLRDEKGISIMYITHDIATIGYVADRVYVVK 230
Query: 239 LGRIVEMGPAKEVIDNPLHPYTRALLAAVPEP 270
GRIVE G +I +P H YTR L+ AVP+P
Sbjct: 231 NGRIVEEGDVGTIISHPKHEYTRLLIEAVPDP 262
>pir||D71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256910|dbj|BAA29593.1|
(AP000002) 324aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 324
Score = 208 bits (524), Expect = 7e-53
Identities = 119/334 (35%), Positives = 198/334 (58%), Gaps = 22/334 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+V NL+ Y+ RGF V+AVDG+SFEV K +VF + GESGCGK+T
Sbjct: 3 LLRVRNLRIYYSTPRGF-----------VKAVDGVSFEVKKGEVFGIAGESGCGKSTLVH 51
Query: 65 LVVKLLEPTD---GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
++ P GK +G+D+ +L +E K + + +I Q +++NP +I D++
Sbjct: 52 SLILRKPPMTHKGGKAIFKGKDLMKLSREEARKIQYKELSIIPQYAMNALNPTKKIKDIV 111
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
+ HG+ + + E E+L+ + L MVK++P + +P LSGG RQR + + +LN
Sbjct: 112 WDLAREHGM-QDKKEVEKLLKERLSMVKLSP--KVAEMYPVELSGGMRQRATMVVSTLLN 168
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGV-TYLYITHDLSTARYFADWIAVMYLG 240
P ++ADE S LDV+ + ++EL+ E+ V + +++THDL+ R AD + +MY G
Sbjct: 169 PDLLIADEVTSALDVTTQRVVIELLHHFMEEGIVKSIIFVTHDLALLRQIADRVMIMYAG 228
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPE-PIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
++VE+G +EV+++P HPYT+ LL ++P + +++ ++ +P G S +N P GCRF
Sbjct: 229 KVVEIGSMEEVLESPAHPYTQLLLNSLPRMGVHYKRERLRGIP--GYPISLLNPPEGCRF 286
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
+ RC Y + +C EP+L+E S H+ CH +G
Sbjct: 287 YTRCPYAMQ-VCREVEPELVEVSPGHYAACHLLG 319
>gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola]
Length = 330
Score = 208 bits (524), Expect = 7e-53
Identities = 125/336 (37%), Positives = 178/336 (52%), Gaps = 23/336 (6%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M P+L+V+NL YF +G ++AV G+ F + + +VGESG GK+
Sbjct: 1 MKNPLLEVKNLHTYFFTNKGT-----------IKAVQGVDFTIEAGKTLGIVGESGSGKS 49
Query: 61 TTGKLVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFR 116
T ++ LLE G+I G ++ L KE K + MIFQ+P +S+NP R
Sbjct: 50 ITAFSILNLLEYPGKIVQGEINFGGINLVNLGKKEIRKIRGNDISMIFQEPMTSLNPVHR 109
Query: 117 IYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIAR 176
I L EPL++H ++ E L VKI PE V +P LSGG RQRV IA
Sbjct: 110 IGRQLSEPLILHQ-HMSKKEAWAAAIDLLREVKIPNPENVVYNYPFQLSGGMRQRVMIAM 168
Query: 177 ALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAV 236
AL P ++ADEP + LDV+I+A+I +LM +LK+K ++ITHDL AD +AV
Sbjct: 169 ALACKPRLLIADEPTTALDVTIQAQIFKLMNDLKKKHNTAIMFITHDLGAIAELADDVAV 228
Query: 237 MYLGRIVEMGPAKEVIDNPL---HPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNI 293
MY G IVE P + D HPY LL ++P + E + + + I+G VP + +
Sbjct: 229 MYTGEIVERAPVDVIFDRQTQFSHPYKEGLLESIP-LLDEEVEYLAQ--IQGSVPHPLKL 285
Query: 294 PPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
P GCRF RC Y + C ++P+L+E H + C
Sbjct: 286 PKGCRFSTRCEYATE-KCRNEKPELVEVEEGHLIRC 320
>pir||D83419 probable ATP-binding component of ABC transporter PA1807 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9947791|gb|AAG05196.1|AE004607_2 (AE004607) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 208 bits (524), Expect = 7e-53
Identities = 110/264 (41%), Positives = 173/264 (64%), Gaps = 9/264 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L V++L+ +FPIR+G V+AVDG++FE+ + Q +VGESG GK+T
Sbjct: 272 ETLLAVDDLRVWFPIRKGVFR----RTVDHVKAVDGVNFELPRGQTLGIVGESGSGKSTL 327
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
G +++LLE + G I EG + L + +++ RR +Q++FQDP+ S++PR + +++
Sbjct: 328 GLAILRLLE-SQGGIRFEGTRLDGL-AQHDVRPLRREMQVVFQDPYGSLSPRMCVGEIVG 385
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E L IH IG + AE+E+ I AL V + P Y R+PH SGGQRQR+AIARAL+L P
Sbjct: 386 EGLRIHRIG-SEAEQEQAIIDALVEVGLDPQTRY--RYPHEFSGGQRQRIAIARALVLKP 442
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
I+ DEP S LD +++ +++EL+++L+ K +TYL+I+HDL+ + + + V+ G++
Sbjct: 443 ALILLDEPTSALDRTVQRQVVELLRQLQGKYNLTYLFISHDLAVVKALSHQLMVVRHGKV 502
Query: 243 VEMGPAKEVIDNPLHPYTRALLAA 266
VE G A+ V +P HPYT+ LL A
Sbjct: 503 VEQGSAEAVFASPQHPYTQQLLEA 526
Score = 187 bits (471), Expect = 1e-46
Identities = 110/278 (39%), Positives = 164/278 (58%), Gaps = 19/278 (6%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+E IL++ +L F L GE +Q R V+G+SF++ + + ALVGESG GK+
Sbjct: 1 MSENILEIRDLAVEF---------LSGEQRQ--RVVEGVSFDIRQGETLALVGESGSGKS 49
Query: 61 TTGKLVVKLLEPT-----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRF 115
T +++LL + G I+ +G+D+ +L + R+ M+FQ+P +S+NP
Sbjct: 50 VTAHSILRLLPYSVASHPAGSIHYQGEDLLKLPERRLRGIRGNRIAMVFQEPMTSLNPLH 109
Query: 116 RIYDVLEEPLLIH-GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAI 174
I L E L +H G+G +A I + LE+V I P + + +PH LSGGQRQRV I
Sbjct: 110 TIEKQLAEVLALHKGLGGAKASAR--ILELLELVGIPEPAKRLKAYPHELSGGQRQRVMI 167
Query: 175 ARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWI 234
A AL P ++ADEP + LDV+++ +IL+L+K+L+ ++G++ L ITHDL+ R A +
Sbjct: 168 AMALACEPQLLIADEPTTALDVTVQLKILDLLKDLQARLGMSLLLITHDLNLVRRIAHRV 227
Query: 235 AVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIP 272
VM GRIVE +E+ P HPYTR LL A P P
Sbjct: 228 CVMQQGRIVEQASCQELFAAPRHPYTRELLNAEPSGAP 265
>pir||E64557 dipeptide transport ATP-binding protein dppD - Helicobacter pylori
(strain 26695) >gi|2313399|gb|AAD07370.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Helicobacter pylori 26695]
Length = 287
Score = 208 bits (523), Expect = 1e-52
Identities = 116/271 (42%), Positives = 164/271 (59%), Gaps = 16/271 (5%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
IL+V++LK YF +G +AVDG+SF + K Q +VGESG GK+ T
Sbjct: 2 ILEVKDLKTYFFTDKGVN-----------KAVDGVSFGLKKSQTLCIVGESGSGKSITSL 50
Query: 65 LVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRFRIYD 119
++ L+E G I GQD+ QL+ K+ K R +++ MIFQ+P +S+NP + +
Sbjct: 51 SILGLIEKPGQIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGF 110
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+ E L IH + ER E + LE V I + +P LSGGQRQRV IA A++
Sbjct: 111 QINEVLKIHHPNLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMV 170
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
P ++ADEP + LDV+I+A+ILELMKEL++K G + L+ITHDL AD + VMY
Sbjct: 171 CEPEILIADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYK 230
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEP 270
G +VE AKE+ +P HPYT+ALL+A+P+P
Sbjct: 231 GHVVEQASAKELFADPRHPYTKALLSAIPKP 261
>gi|10954710 hypothetical ABC-transporter gene~similar to moaD gene
[Agrobacterium rhizogenes] >gi|8918710|dbj|BAA97775.1|
(AB039932) hypothetical ABC-transporter gene~similar to
moaD gene [Agrobacterium rhizogenes]
>gi|10567374|dbj|BAB16183.1| (AP002086) hypothetical
ABC-transporter gene~similar to moaD gene [Agrobacterium
rhizogenes]
Length = 603
Score = 208 bits (523), Expect = 1e-52
Identities = 123/330 (37%), Positives = 190/330 (57%), Gaps = 12/330 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L VEN + + +RR + E V+AV +SF V + F +VGESGCGK+T
Sbjct: 276 EAVLTVENATRTYSVRRRDAFNAFNE----VKAVRDVSFTVKAGENFGIVGESGCGKSTL 331
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
+L+ L +P G+I G++++ L + + R+ Q++ QDP+ S+ I ++E
Sbjct: 332 TRLLAWLEQPNAGRIAFLGKNLSNLSARS-LTEMRKSFQLLLQDPYGSLPAGMSIIRMIE 390
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
EPLLIHG+ R + E+ +A+ V + + R P LS GQRQR+ IARAL+L P
Sbjct: 391 EPLLIHGVA--RRDAEQRAQEAMREVGLHA--DLAERLPVGLSAGQRQRINIARALVLKP 446
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
++ DE +S LD +AE+L+L K L+ G +Y++I+HDL+ R +AVMYLGRI
Sbjct: 447 RLLILDETLSALDQVEQAELLDLFKRLQAAHGFSYIFISHDLALVRRICHRVAVMYLGRI 506
Query: 243 VEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPR 302
VE+ K + ++P HPYTRALL+A+P + E + + + GE PS +++P GC F R
Sbjct: 507 VELADNKTLFEHPHHPYTRALLSAMP-TLEENRFPGAQYLLDGEPPSPIHLPVGCSFRSR 565
Query: 303 CVYFKKGLCDTKEPKLIEYSHNHWVEC-HR 331
C + C+ +P L ++ C HR
Sbjct: 566 CPRAQSD-CEKTDPMLEGSDGGNYAACLHR 594
Score = 134 bits (334), Expect = 1e-30
Identities = 92/285 (32%), Positives = 137/285 (47%), Gaps = 20/285 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M++PIL V NL + LR ++ R VD + F + +V LVGE+G GK+
Sbjct: 1 MSDPILAVSNLS---------VDLLRDGSKR--RIVDNVDFALQPGEVLGLVGEAGSGKS 49
Query: 61 TTGKLVVKLLE-PTD---GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFR 116
+ +V ++ P D G++ EG+DV L + R+ I +P S++PR
Sbjct: 50 VLARAMVNAIQAPLDISSGQVIFEGKDVLSLDARGLRSIRGNRIGFIGANPMGSLDPRLP 109
Query: 117 IYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIAR 176
I + E L +AE +E + L V I P P SGG QRV I
Sbjct: 110 IGHQIVEKLRSVRPDIGKAEAKEKVLDLLGRVHIPSPRSRFHEAPFQFSGGMMQRVMIVD 169
Query: 177 ALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAV 236
AL+ P+ ++AD LDV++ A+I+ L+ L+E + +L+I+ L A+ V
Sbjct: 170 ALVSEPSLVIADNITQPLDVTVAAQIIRLIDNLRESLDTAFLFISSSLPVVSKIAERTLV 229
Query: 237 MYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE-----PIPERKD 276
M GRIVE G ++ NP YTRALL+ +P PE KD
Sbjct: 230 MQGGRIVEQGETADIAANPQQAYTRALLSRIPSIWKNVSAPEAKD 274
>emb|CAC05750.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 327
Score = 208 bits (523), Expect = 1e-52
Identities = 114/310 (36%), Positives = 177/310 (56%), Gaps = 19/310 (6%)
Query: 34 RAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLE-----PTDGKIYLEGQDVTQLR 88
+AV+G+S+ V + A++GESG GK+ T + ++ +L+ T G+I EG+D+ +L+
Sbjct: 20 KAVNGVSYGVDAGETLAVLGESGSGKSVTAQTIMGILDIPPGRVTAGEILFEGRDLLKLK 79
Query: 89 TKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMV 148
+E K + MIFQD SS+NP + L E +H G +R + + ++ V
Sbjct: 80 EEERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMFTVHR-GMSRKDAHAKAVELMDRV 138
Query: 149 KITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKE 208
+I +E V ++PH SGG RQR+ IA A+ L P I+ADEP + LDV+++A++++L+ E
Sbjct: 139 RIPAAKERVRQYPHQFSGGMRQRIMIAMAMALEPKLIIADEPTTALDVTVQAQVMDLLAE 198
Query: 209 LKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVP 268
L+ ++ + + ITHDL AD IAVMY GRIVE P ++ P HPYTR LL ++P
Sbjct: 199 LQRELHMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHDIYKAPAHPYTRGLLESIP 258
Query: 269 EPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSH----- 323
+ +++ IKG P+ IPPGC FHPRC + +C T P L + +
Sbjct: 259 RLDQKGQEL---YAIKGLPPNLTRIPPGCAFHPRCP-MAQDVCRTDVPPLYDVTESDAER 314
Query: 324 ----NHWVEC 329
+ W EC
Sbjct: 315 GSACHFWREC 324
>dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 207 bits (521), Expect = 2e-52
Identities = 126/334 (37%), Positives = 179/334 (52%), Gaps = 26/334 (7%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
+ +L V LK YF G + S V+G+SFEV + A+VGESGCGK+ T
Sbjct: 4 DTLLSVRELKTYFYTESGAVPS-----------VNGVSFEVKHGETVAVVGESGCGKSVT 52
Query: 63 GKLVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIY 118
++ L+ G I GQD+T + +E K + MIFQ+P +S+NP F I
Sbjct: 53 SLSIMGLVRSPGKIVGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIG 112
Query: 119 DVLEEPLLIHGIGETRAEREELIYKALEMVK---ITPPEEYVGRFPHMLSGGQRQRVAIA 175
+ L E +L H + +EE K +EM+K I E+ +PH LSGG RQRV IA
Sbjct: 113 NQLGEVILQH----QQVTKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIA 168
Query: 176 RALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIA 235
AL P ++ADEP + LDV+I+A+IL+LM++L ++ L ITHDL AD +
Sbjct: 169 MALACEPKLLIADEPTTALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVI 228
Query: 236 VMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPP 295
VMY G++VE + P HPYT+ LLA+ P + K I+G VP+ +P
Sbjct: 229 VMYAGQVVEQADVFTLFATPAHPYTQGLLASTPNIHASGE---KLQSIEGTVPTHETMPK 285
Query: 296 GCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
GCRF PRC++ + C +EP L++ V C
Sbjct: 286 GCRFFPRCLHATE-QCVHQEPPLMKTGRGQHVRC 318
>pir||H71951 dipeptide transport system dipeptide transport system ATP-binding
protein - Helicobacter pylori (strain J99)
>gi|4154800|gb|AAD05856.1| (AE001465) DIPEPTIDE
TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 206 bits (520), Expect = 2e-52
Identities = 116/271 (42%), Positives = 163/271 (59%), Gaps = 16/271 (5%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
IL+V++LK YF +G +AVDG+SF + K Q +VGESG GK+ T
Sbjct: 2 ILEVKDLKTYFFTDKGVN-----------KAVDGVSFGLKKSQTLCIVGESGSGKSITSL 50
Query: 65 LVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRFRIYD 119
++ L+E G I GQD+ QL+ K+ K R +++ MIFQ+P +S+NP + +
Sbjct: 51 SILGLIEKPGKIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGF 110
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+ E L IH + ER E + LE V I + +P LSGGQRQRV IA A++
Sbjct: 111 QINEVLKIHHPSLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMV 170
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
P ++ADEP + LDV+I+A+ILELMKEL++K G + L+ITHDL AD + VMY
Sbjct: 171 CEPEILIADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYK 230
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEP 270
G +VE AKE+ +P HPYT+ALL A+P+P
Sbjct: 231 GHVVEQASAKELFADPRHPYTKALLNAIPKP 261
>pir||D72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981700|gb|AAD36228.1|AE001772_7 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 323
Score = 206 bits (518), Expect = 4e-52
Identities = 118/294 (40%), Positives = 170/294 (57%), Gaps = 9/294 (3%)
Query: 30 QQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP---TDGKIYLEGQDVTQ 86
++ V AV+ +SF + K + LVGESGCGK+T G +++LL DG I +EG D++
Sbjct: 17 EKTVNAVENVSFHLEKGETLGLVGESGCGKSTLGFSIMRLLPKGTKIDGSIKIEGIDISS 76
Query: 87 LRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALE 146
L +E + +V MIFQDP +S+NP RI D E +L H ++ + EL KALE
Sbjct: 77 LSDEEMRQIRGSKVAMIFQDPMTSLNPILRIEDHFVEMILTHRPELSKEDARELAAKALE 136
Query: 147 MVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELM 206
V I + +P SGG RQRV IA +++LNP ++ADEP + LDV ++A+I+EL+
Sbjct: 137 DVGIN--RNRLKDYPFQFSGGMRQRVMIALSIVLNPAVLIADEPTTSLDVIVQAQIMELL 194
Query: 207 KELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAA 266
++L ++ + ITHD+ AD I VMY G +VE+ + + NPLHPYT LL +
Sbjct: 195 EKLTKEHRTAMILITHDMGLVAEAADRIGVMYAGHLVELASKERIFTNPLHPYTVGLLRS 254
Query: 267 VPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIE 320
+P K+ ++ +P G P N P GCRF PRC K +C KEP E
Sbjct: 255 IPNTDVNDKE-LRYIP--GSPPDLSNPPEGCRFAPRCEKAMK-ICWEKEPPEFE 304
>pir||T45280 probable ABC transporter intracellular ATPase chain bldkD
[imported] - Streptomyces coelicolor
>gi|1532204|gb|AAB09557.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldkD
[Streptomyces coelicolor A3(2)]
Length = 353
Score = 205 bits (517), Expect = 5e-52
Identities = 120/339 (35%), Positives = 183/339 (53%), Gaps = 24/339 (7%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
+ L V +LK +F G V+AVDG+SF++ + + +VGESG GK+ T
Sbjct: 17 DAFLSVRDLKVHFSTEGGV-----------VKAVDGLSFDLERGKTLGIVGESGSGKSVT 65
Query: 63 GKLVVKLLE----PTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIY 118
V+ L + DG I L+GQ++T K+ K +++ MIFQD ++++P + +
Sbjct: 66 NLAVLGLHDRRRTAIDGSITLDGQELTDASEKQLEKLRGKKMAMIFQDALTALSPYYTVG 125
Query: 119 DVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
+ EP + H G ++ + L+ V I P++ V +PH SGG QR IA AL
Sbjct: 126 RQIAEPFMKHN-GASKKDARCGAIDLLQKVGIPHPQKRVDDYPHQFSGGIGQRAMIAMAL 184
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
NP ++ADEP + LDV+++A+IL+L+K+L+++ + ITHDL AD I VMY
Sbjct: 185 SCNPDLLIADEPTTALDVTVQAQILDLLKDLQQEFASAIIMITHDLGVVGNMADDIMVMY 244
Query: 239 LGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCR 298
GR VE G +EV+ +P HPYT LL+++P + + + +PI G PS +N P GC
Sbjct: 245 AGRAVERGTVREVLKSPQHPYTWGLLSSMPNLTSDVDEPL--MPIPGSPPSLMNPPSGCA 302
Query: 299 FHPRCVY---FKKGLCDTKEPKLIEYSHNHWVECHRVGE 334
FHPRC + C + P L H CH G+
Sbjct: 303 FHPRCGFTDLVSGERCSGERPTL---PHGRAAACHLTGD 338
>pir||F72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980512|gb|AAD35122.1|AE001690_16 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 330
Score = 205 bits (517), Expect = 5e-52
Identities = 131/343 (38%), Positives = 195/343 (56%), Gaps = 35/343 (10%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M E +LK EN++ Y+ + + V+AVDG+SFE+ + +V +VGESGCGKT
Sbjct: 1 MKEILLKAENVRAYYKLEK-----------VSVKAVDGLSFEILEDEVIGVVGESGCGKT 49
Query: 61 TTGKLV----VKLLEPTDGKIYLE--GQDVT-QLRTKEEIKA--YRRRVQMIFQDPFSSM 111
T ++ VK L DGKI+L G+ V T++E+K + + + +I Q +++
Sbjct: 50 TLSNVIFMNMVKPLTLVDGKIFLRVNGEFVELSSMTRDEVKRKFWGKEITIIPQAAMNAL 109
Query: 112 NPRFRIYDVLEEPLLIHGIGETRAEREELIYKA---LEMVKITPPEEYVGRFPHMLSGGQ 168
P R+ + HGI E EEL+ KA E V + P ++ R+P LSGG
Sbjct: 110 MPTIRMEKYVRHLAESHGIDE-----EELLDKARRRFEEVGLDPL--WIKRYPFELSGGM 162
Query: 169 RQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGV-TYLYITHDLSTA 227
RQR IA A ILNP+ ++ADEP S LDV + +L+++ ++K + V + ++ITHD++T
Sbjct: 163 RQRAVIAIATILNPSLLIADEPTSALDVVNQKVLLKVLMQMKRQGIVKSIIFITHDIATV 222
Query: 228 RYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPE-RKDVIKELPIKGE 286
R AD + +MY G+IVE P + +++ PLHPYT+ L +V P PE +K I +P G
Sbjct: 223 RQIADRMIIMYAGKIVEFAPVESLLEKPLHPYTQGLFNSVLTPEPEVKKRGITTIP--GA 280
Query: 287 VPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
P+ +N P GCRFHPRC + +C KEP L E V C
Sbjct: 281 PPNLINPPSGCRFHPRCPH-AMDVCKEKEPPLTEIEPGRRVAC 322
>gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (dppD-1) [Sulfolobus
solfataricus]
Length = 316
Score = 205 bits (516), Expect = 6e-52
Identities = 118/330 (35%), Positives = 191/330 (57%), Gaps = 27/330 (8%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+V NLK YF +RG V+AVDG++ + K ++ L GESG GK+T G
Sbjct: 6 LLEVRNLKVYFYTKRGI-----------VKAVDGVNLYLDKGEIVGLAGESGSGKSTIGY 54
Query: 65 LVVKLL----EPTDGKIYLEGQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRFRIYD 119
+++L+ + G+I +G+++ +L + K YR +++ M+FQ S P F+I D
Sbjct: 55 AIMRLVPFPGKIESGEILFKGENILKLDEEAFRKNYRWKKIAMVFQGSMSGFTPVFKIKD 114
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+ E L IHG + EE I + +MV + P + ++PH LSGGQ+QR IA AL
Sbjct: 115 QIIEVLRIHG---WNGDYEERIKELFKMVNMDP--QLAEKYPHELSGGQKQRAFIAMALA 169
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
LNP ++ADEP + LDV ++ IL L+K+L++++ ++ ++ITHDL+ +D +Y
Sbjct: 170 LNPEVLIADEPTTALDVMVQEHILNLLKKLRKELNLSIIFITHDLALLSEISDRDYTLYA 229
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
G+++E GP++ + P HPYT L+ ++ KD+IK +P G +P + P GCRF
Sbjct: 230 GKVMESGPSEVIFKKPRHPYTSLLIESI---ATLDKDIIKGIP--GAMPDLSSPPLGCRF 284
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
+ RC F + +C +EPK+ +S V C
Sbjct: 285 NTRCP-FARDICFKEEPKMKTFSDGDEVAC 313
>gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis]
Length = 347
Score = 205 bits (516), Expect = 6e-52
Identities = 114/299 (38%), Positives = 178/299 (59%), Gaps = 10/299 (3%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPT-----DGKIYLEGQDVTQL 87
V+AV G++F++ K + A+VGESG GK+ T K ++ L+ +G+I EG+D+T+L
Sbjct: 21 VQAVRGVTFDLKKGETLAIVGESGSGKSVTSKALMGLIPNPPGRIKNGEIVFEGRDLTKL 80
Query: 88 RTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEM 147
KE + + + MIFQDP +S+NP I + + E L+ H G ++A+ ++ + +++
Sbjct: 81 TEKEMQQVRGKDIAMIFQDPMTSLNPTMTIGNQIMEGLIKHQ-GMSKADARKVALELIDL 139
Query: 148 VKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMK 207
V I PE + ++PH SGG RQRV IA AL NP ++ADEP + LDV+I+A+ILELMK
Sbjct: 140 VGIPNPEARLKQYPHQFSGGMRQRVVIAMALACNPKLLIADEPTTALDVTIQAQILELMK 199
Query: 208 ELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
++++K ++ITHDL AD +AVMY G++VE+G E+ NP HPYT L+A++
Sbjct: 200 DIQQKTEAAIIFITHDLGVVANVADRVAVMYAGKVVEIGTVDEIFYNPKHPYTWGLIASM 259
Query: 268 PEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHW 326
P +++ I G P + P G F PR K + +P L + S H+
Sbjct: 260 PSLDGSEEEL---YAIPGTPPDLLKPPKGDAFAPRNPQALK-IDFEMDPPLFKVSDTHY 314
>gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocytogenes]
Length = 358
Score = 204 bits (514), Expect = 1e-51
Identities = 113/299 (37%), Positives = 178/299 (58%), Gaps = 10/299 (3%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLL-----EPTDGKIYLEGQDVTQL 87
V+A+ G++F++YK + A+VGESG GK+ T K +++LL E G+I G D+ +
Sbjct: 21 VKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPEGNSEIKSGQILFNGMDIAKA 80
Query: 88 RTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEM 147
K+ K + + MIFQDP +S+NP I + EPL+ H ++ E + + L++
Sbjct: 81 HEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIKHQ-KISKHEAHKTALRLLQL 139
Query: 148 VKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMK 207
V I EE + ++PH SGG RQRV IA +L NP ++ADEP + LDV+I+A+IL+LMK
Sbjct: 140 VGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIADEPTTALDVTIQAQILDLMK 199
Query: 208 ELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
+L++K+ + ++ITHDL AD +AVMY G+IVE+G E+ NP HPYT L++++
Sbjct: 200 DLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGTVDEIFYNPQHPYTWGLISSM 259
Query: 268 PEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHW 326
P + +++ I G P ++ P G F R Y + + +EP L + S H+
Sbjct: 260 PTLDTDDEEL---FVIPGTPPDLLHPPKGDAFAARNKYAMQ-IDLEEEPPLFKVSDTHY 314
>pir||C75142 oligopeptide transport ATP-binding protein appf PAB0630 -
Pyrococcus abyssi (strain Orsay)
>gi|5458363|emb|CAB49852.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 203 bits (511), Expect = 2e-51
Identities = 119/334 (35%), Positives = 191/334 (56%), Gaps = 22/334 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L V NL+ Y+ P +VRAVDG+SFEV + +VF + GESGCGK+T
Sbjct: 3 LLDVRNLRVYYRT-----------PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVH 51
Query: 65 LVVKLLEPTD---GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
++ P + G +G+D+ L E K + +I Q +++NP RI D++
Sbjct: 52 SLILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIV 111
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
+ HG + R E EEL+ + L MVK++P +P LSGG RQR + + +LN
Sbjct: 112 WDLAREHGYADRR-EVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLN 168
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKE-LKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P ++ADE S LDV+ + ++EL+ ++E + + +++THDL+ R AD + VMY G
Sbjct: 169 PDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAG 228
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPE-PIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
++VE+GP +EV++NP HPYT+ LL ++P + +++ + +P G S +N P GCRF
Sbjct: 229 KVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIP--GYPISLLNPPKGCRF 286
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
+ RC + + C EPKL++ +H+ CH +G
Sbjct: 287 YTRCPFAMED-CRDVEPKLVKVGRDHYAACHLLG 319
>pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd) PAB1346 -
Pyrococcus abyssi (strain Orsay)
>gi|5458956|emb|CAB50443.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppD) [Pyrococcus
abyssi]
Length = 322
Score = 202 bits (508), Expect = 6e-51
Identities = 120/334 (35%), Positives = 189/334 (55%), Gaps = 22/334 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L V NL+ Y+ P +VRAVDG+SFEV + +VF + GESGCGK+T
Sbjct: 3 LLDVRNLRVYYRT-----------PVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVH 51
Query: 65 LVVKLLEPTD---GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
++ P + G +G+D+ L E K + +I Q +++NP RI D++
Sbjct: 52 SLILRKPPMEYKGGSAIFKGRDLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIV 111
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
+ HG + R E EEL+ + L MVK++P +P LSGG RQR + + +LN
Sbjct: 112 WDLAREHGYADRR-EVEELLRERLSMVKLSP--RVADMYPVELSGGMRQRATMVVSTLLN 168
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKE-LKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P ++ADE S LDV+ + ++EL+ ++E + + +++THDL+ R AD + VMY G
Sbjct: 169 PDLLIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAG 228
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAAVPE-PIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
++VE+GP +EV++NP HPYT+ LL ++P + +++ + +P G S +N P GCRF
Sbjct: 229 KVVEIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIP--GYPISLLNPPRGCRF 286
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
+ RC F C EPKL++ H+ CH +G
Sbjct: 287 YTRCP-FAMEHCPEVEPKLVKVGKEHYAACHLLG 319
>dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 201 bits (507), Expect = 7e-51
Identities = 119/335 (35%), Positives = 185/335 (54%), Gaps = 23/335 (6%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M + +L+++ L+ +F +G V AVDG+S +++ ++ +VGESGCGK+
Sbjct: 1 MPDVVLELDKLRTHFFTDQGE-----------VPAVDGVSLRLHQGEIIGIVGESGCGKS 49
Query: 61 TTGKLVVKLLEPTDGKI-----YLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRF 115
T +++L+ GKI Y +G+D+ Q+ K + + MIFQ+P +S+NP F
Sbjct: 50 VTSLSIMQLVPNPPGKIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLF 109
Query: 116 RIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIA 175
I + L E + H T+ E + LE V I +E +PH LSGG RQRV IA
Sbjct: 110 TIGNQLIEAIRNHR-KMTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIA 168
Query: 176 RALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIA 235
A+ +P ++ADEP + LDV+I+A+IL+LM+ L E L ITHDL + +
Sbjct: 169 MAMCCDPKVLIADEPTTALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVV 228
Query: 236 VMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPP 295
VMY G++VE G + ++ +P HPYT+ LL ++P+ I E+ + +P G VP +
Sbjct: 229 VMYAGQVVEEGDVRMILKHPKHPYTKGLLKSLPK-IHEQSKRLYSIP--GVVPKPGTVGH 285
Query: 296 GCRFHPRC-VYFKKGLCDTKEPKLIEYSHNHWVEC 329
GCRF RC V F++ C T P+L + + H C
Sbjct: 286 GCRFAARCEVAFER--CKTTAPQLQQVATGHQCRC 318
>pir||E71130 probable oligopeptide transport ATP-binding protein APPD -
Pyrococcus horikoshii >gi|3257220|dbj|BAA29903.1|
(AP000003) 327aa long hypothetical oligopeptide
transport ATP-binding protein APPD [Pyrococcus
horikoshii]
Length = 327
Score = 201 bits (506), Expect = 1e-50
Identities = 120/331 (36%), Positives = 181/331 (54%), Gaps = 24/331 (7%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
IL++E L + R G V A+ +SF V K + ++GESG GK+T G
Sbjct: 4 ILEIEGLTVKYKTRYGT-----------VHALSNVSFSVKKGSIVGIIGESGSGKSTLGH 52
Query: 65 LVVKLLEPT----DGKIYLEGQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRFRIYD 119
+++ L GKI EG D+ ++ + + +R +++ MIFQ+ ++ +P RI D
Sbjct: 53 TILRTLPENARIESGKIMFEGSDLLEIDEEVFRREFRWKKISMIFQNSMNAFSPVHRIQD 112
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
L + ++R E E+I + L + I E + ++PH LSGGQRQRVAI AL+
Sbjct: 113 QLLDVARKCFPNKSRNELLEIIKEKLRIANID--ESVLKKYPHELSGGQRQRVAIGMALL 170
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
+P ++ADEP + LDV + +IL +KE+++ +G+T L ITHD+S + + V+Y
Sbjct: 171 ADPEIVIADEPTTGLDVVTQYQILNRLKEIQKDLGITLLLITHDVSVVAALSTDVLVLYA 230
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
G+++E G K V N HPYT LL + PE K+ + E+P G P N P GC F
Sbjct: 231 GKVLEYGDIKRVFKNSHHPYTYLLLRSYPE---MGKEKLYEIP--GSPPDLRNPPSGCVF 285
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
HPRC Y LC +EPKL+E H+ CH
Sbjct: 286 HPRCPY-ATDLCRKEEPKLVEIEEGHFSACH 315
>gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dppD-3) [Sulfolobus
solfataricus]
Length = 324
Score = 201 bits (505), Expect = 1e-50
Identities = 118/323 (36%), Positives = 187/323 (57%), Gaps = 23/323 (7%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L++ NL Y+ L S +V+ + ++ +V K ++ +VGESG GK+T G
Sbjct: 6 VLQIRNLNVYY----NTLIS-------WVKVLSDVNLDVEKGEIVGVVGESGSGKSTLGH 54
Query: 65 LVVKLLEPT---DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
+ ++L P G I ++G ++ +L+ E K V MIFQ+P +S+NP ++ L
Sbjct: 55 AISRILPPNARIQGDIIVDGVNLAKLKDSELQKYRGTWVFMIFQNPLNSLNPVKKVGSQL 114
Query: 122 EEPLLIHGIGE-TRAEREELIYKALEMVK---ITPPEEYVGRFPHMLSGGQRQRVAIARA 177
E + I E +AE E L+ +E++K + P + R+PH LSGGQ QR+ I+ A
Sbjct: 115 LEAVKIRYQREGKKAEEESLMRDVIEVLKDLRLPDPYSIIDRYPHQLSGGQVQRIVISMA 174
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L+L P ++ADEP S LDV+I+A+++ L K+L +++ + L+ITHD+S A +D I VM
Sbjct: 175 LLLKPKLLIADEPTSALDVTIQAQVVNLFKQLNKEINTSILFITHDISLAYVVSDRIVVM 234
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGC 297
Y GRI+E G +EV+ +P+HPYT+ L+A++P + K I G PS +P GC
Sbjct: 235 YAGRIMEDGKVEEVLKSPMHPYTQGLVASIPSGDKNQ----KLTAIPGNPPSFFALPTGC 290
Query: 298 RFHPRCVYFKKGLCDTKEPKLIE 320
+F RC +C KEP +IE
Sbjct: 291 KFSNRCSKV-FDICRKKEPSIIE 312
>gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter ATPase subunit [uncultured
proteobacterium EBAC31A08]
Length = 532
Score = 198 bits (499), Expect = 6e-50
Identities = 109/264 (41%), Positives = 163/264 (61%), Gaps = 10/264 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
EPI+++ +L Y+ I S + AV SF +YK LVGESG GK+T
Sbjct: 272 EPIIEINDLNVYYSI-----PSTNFFKKNTFHAVKNTSFSIYKNTTIGLVGESGSGKSTL 326
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
GK + L+ G I EG+D+ KE K ++ VQ++FQDP+ S++PR + +++
Sbjct: 327 GKAIANLVS-YKGNIKFEGRDINSNSQKEN-KELKKNVQIVFQDPYGSLSPRMTVGEIVG 384
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E L +H T+ ER+E I K L V I + ++PH SGGQRQR+AIAR+LI+NP
Sbjct: 385 EGLGVH-FKLTKKERDERIDKVLSDVGIEIVAK--NKYPHEFSGGQRQRIAIARSLIMNP 441
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
F++ DEP S LD SI+ ++++L+KE++ + G+TYL+I+HDL R +D+I VM G I
Sbjct: 442 AFMILDEPTSALDRSIQIQVIDLLKEIQNEYGLTYLFISHDLKVIRSMSDFIFVMKNGEI 501
Query: 243 VEMGPAKEVIDNPLHPYTRALLAA 266
VE GP+ +V ++P YT+ LL+A
Sbjct: 502 VESGPSHKVFESPEQDYTKKLLSA 525
Score = 187 bits (469), Expect = 2e-46
Identities = 105/272 (38%), Positives = 157/272 (57%), Gaps = 18/272 (6%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
IL+V +L F R G AVD ISF++ K Q ALVGESG GK+ T
Sbjct: 4 ILEVSDLSINFSTRDGLF-----------NAVDNISFDIEKNQTLALVGESGSGKSVTAM 52
Query: 65 LVVKLLEPT------DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIY 118
+++LL+ + I G ++ + ++ + + MIFQ+P +S+NP R+
Sbjct: 53 SILQLLQKPQASYSKESSIKFNGDEIINAKYEKLLSLRGNIISMIFQEPMTSLNPYHRVG 112
Query: 119 DVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
+ + E +L+H + +E K + +V+I E +PH LSGGQRQRV IA AL
Sbjct: 113 NQITESILLHSKSSKKDAIDEA-KKLMALVEIDDVERRFYAYPHELSGGQRQRVMIAMAL 171
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
+ P ++ADEP + LDV+I+A+IL+LM +LK ++G++ L+ITHDL + F+D + VM
Sbjct: 172 VNKPELLIADEPTTALDVTIQAQILDLMSKLKNELGMSILFITHDLGLVQEFSDNVCVMK 231
Query: 239 LGRIVEMGPAKEVIDNPLHPYTRALLAAVPEP 270
G+IVE G EV +NP H YT+ LL A P+P
Sbjct: 232 NGKIVEQGNTVEVFNNPSHEYTKKLLDAEPQP 263
>sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|1074009|pir||F64188 dipeptide transport ATP-binding
protein dppD - Haemophilus influenzae (strain Rd KW20)
>gi|972897|gb|AAA95974.1| (U17295) DppD [Haemophilus
influenzae] >gi|1574112|gb|AAC22838.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Haemophilus influenzae Rd]
Length = 330
Score = 198 bits (497), Expect = 1e-49
Identities = 116/308 (37%), Positives = 181/308 (58%), Gaps = 10/308 (3%)
Query: 27 GEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP----TDGKIYLEGQ 82
G+ + +AVD IS++V + +V +VGESG GK+ + ++ L++ + + E
Sbjct: 14 GDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGRVSAESLQFENT 73
Query: 83 DVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIY 142
D+ L +K + + V MIFQDP +S+NP + + + E L H G T+ R++
Sbjct: 74 DLLTLESKAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALKTHE-GGTKKARKDRTL 132
Query: 143 KALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEI 202
+ L++V I PE + +PH LSGG QRV IA A+ P ++ADEP + LDV+I+A+I
Sbjct: 133 ELLKLVGIPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQI 192
Query: 203 LELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRA 262
+EL+ EL++K ++ + ITHDL+ A+ I VMY G+IVE G AK++ P HPYT+A
Sbjct: 193 MELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVEEGTAKDIFREPKHPYTQA 252
Query: 263 LLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYS 322
LL ++PE E K ++ L +G VP + P GC +PRC Y + C EP+L +
Sbjct: 253 LLRSLPE-FAEGKSRLESL--QGVVPGKYDRPTGCLLNPRCPYATE-YCRQVEPQL-HHI 307
Query: 323 HNHWVECH 330
+ V+CH
Sbjct: 308 GSRKVKCH 315
>dbj|BAA15129.1| (D90788) Dipeptide transport ATP-binding protein DppF. [Escherichia
coli]
Length = 262
Score = 198 bits (497), Expect = 1e-49
Identities = 110/268 (41%), Positives = 163/268 (60%), Gaps = 26/268 (9%)
Query: 51 LVGESGCGKTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSS 110
+VGESGCGK+T +L++ +L+P+ G+ G +R +QM+FQDP SS
Sbjct: 1 IVGESGCGKSTLAQLLMGMLQPSHGQYIRSGS--------------QRIMQMVFQDPLSS 46
Query: 111 MNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQ 170
+NPR ++ ++ EPL I + +R L + V I P EY+ R PH SGGQRQ
Sbjct: 47 LNPRLPVWRIITEPLWI-AKRSSEQQRRALAEELAVQVGIRP--EYLDRLPHAFSGGQRQ 103
Query: 171 RVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYF 230
R+AIARAL P IV DEP S LD+S++A+IL L+ L+E G+TY+ I+H++S R+
Sbjct: 104 RIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHM 163
Query: 231 ADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVP---EPIPERKDVIKELPIKGEV 287
+D +AVMYLG+IVE+G A++V+ P HPYTR LL ++P +P+ E + K ++
Sbjct: 164 SDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKT-----DL 218
Query: 288 PSAVNIPPGCRFHPRCVYFKKGLCDTKE 315
P +P GC F+ RC G C+ ++
Sbjct: 219 PGNRTLPQGCFFYERCPLATHG-CEVRQ 245
>pir||C82442 probable peptide ABC transporter, ATP-binding protein VCA0588
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9657999|gb|AAF96490.1| (AE004389) peptide ABC
transporter, ATP-binding protein, putative [Vibrio
cholerae]
Length = 530
Score = 198 bits (497), Expect = 1e-49
Identities = 107/263 (40%), Positives = 165/263 (62%), Gaps = 9/263 (3%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A +L+ E L+ +FPI+ G+ Q +++AV +SF + K Q LVGESG GK+T
Sbjct: 272 APTLLQAEKLRVWFPIKGGYFR----RTQAYIKAVTDMSFTLAKGQSLGLVGESGSGKST 327
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
TG ++KLL + G I GQD+ L+ +E + YR ++Q++FQDP+S++NPR + V+
Sbjct: 328 TGMAILKLLA-SQGAIRFAGQDLQALKRREMLP-YRSKMQVVFQDPYSALNPRMSVAQVI 385
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
E L +H E + I ++ V + + R+P+ SGGQRQR+AIARAL+L
Sbjct: 386 GEGLRVHS-QLNDDEIDHAICAVMQEVGLDVDTRH--RYPNEFSGGQRQRIAIARALVLK 442
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P FI+ DEP S LD +++A++L+L+K+L++K +TYL+I+HDL+ R VM G
Sbjct: 443 PEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLAVIRALCHHTIVMKAGE 502
Query: 242 IVEMGPAKEVIDNPLHPYTRALL 264
IVE G + + +NP HPYT+ L+
Sbjct: 503 IVEHGETQSLFENPSHPYTQQLV 525
Score = 179 bits (450), Expect = 4e-44
Identities = 112/279 (40%), Positives = 158/279 (56%), Gaps = 21/279 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M + +LK++NL F G Q +G+S + + + ALVGESG GK+
Sbjct: 1 MNDWVLKIDNLSVGF-----------GIAGQARPVTEGVSLTIARGETLALVGESGSGKS 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQ----DVTQLRTKEEIKAYRR--RVQMIFQDPFSSMNPR 114
T +++LL P YL G DV LR E R R+ MIFQ+P S+NP
Sbjct: 50 VTANAILRLL-PKGSAHYLSGSIHFGDVDTLRCSERALRGIRGGRIGMIFQEPMVSLNPL 108
Query: 115 FRIYDVLEEPLLIH-GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVA 173
+I L E L IH G+ T AE++ + + L V I PE + +PH LSGG+RQRV
Sbjct: 109 HKIGKQLVETLAIHRGLRATAAEQKAIEW--LGKVGIRHPEIKINAYPHELSGGERQRVM 166
Query: 174 IARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADW 233
IA ALI P ++ADEP + LDVS++A+IL+L+K L++++G+ L+ITHDLS R AD
Sbjct: 167 IAMALINEPELLIADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADR 226
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIP 272
+AVM G++VE + P HPYT+ L+ A P +P
Sbjct: 227 VAVMQSGQLVETNACHTLFAAPAHPYTQQLINADPRGVP 265
>pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376983|gb|AAD18821.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189002|gb|AAF37954.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979054|dbj|BAA98889.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 197 bits (495), Expect = 2e-49
Identities = 113/332 (34%), Positives = 177/332 (53%), Gaps = 19/332 (5%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
+ PIL++E+L +L + QQ+ V +SF + + Q A++GESG GK+
Sbjct: 3 SNPILQIEDLS----------ITLAKQRQQYP-IVQSLSFTINEGQTLAIIGESGSGKSV 51
Query: 62 TGKLVVKLLE----PTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
+ +++LL G++ +G ++ + K + MIFQ+P +S+NP F I
Sbjct: 52 SAHAILRLLPCPPFSVSGQVNFQGHNLLTASRSIQKKIIGTEISMIFQNPQASLNPVFTI 111
Query: 118 YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
E + H +E+++Y ALE P + +PH LSGG QR+ IA A
Sbjct: 112 EQQFREIIHTHLALTAEVAKEKMLY-ALEETGFHDPRLCLNLYPHQLSGGMLQRICIAMA 170
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L+ +P ++ADEP + LDVS++ +IL+L+K L++K G++ L ITH++ AD + V+
Sbjct: 171 LLCSPKLLIADEPTTALDVSVQYQILQLLKTLQKKTGMSLLIITHNMGVVAETADDVLVL 230
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGC 297
Y GR+VE PA ++ NP HPYTR LLA+ P P++ PI G+ P P GC
Sbjct: 231 YAGRMVECAPAVQMFHNPSHPYTRDLLASRPSLQPQQLGSFN--PIPGQPPHYTAFPSGC 288
Query: 298 RFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
R+HPRC C + P++ H V C
Sbjct: 289 RYHPRCSKI-LNRCSAEAPEIYPVREGHKVRC 319
>pir||B83389 probable ATP-binding component of ABC transporter PA2061 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948069|gb|AAG05449.1|AE004632_8 (AE004632) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 196 bits (494), Expect = 2e-49
Identities = 109/274 (39%), Positives = 166/274 (59%), Gaps = 16/274 (5%)
Query: 1 MAEPI------LKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGE 54
+AEP+ L+V L +P G+L G +RAV +S + + +VGE
Sbjct: 258 LAEPVACRETCLEVRALSLDYPAPGGWLRRRAG-----LRAVHEVSLRLRRGSTLGIVGE 312
Query: 55 SGCGKTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPR 114
SG GK++ G+ +++LL P +G+I +G+ + +L K + RR+ Q +FQDP+ S+NPR
Sbjct: 313 SGSGKSSLGQALLRLL-PAEGQILFQGERLDRLHGKR-LLPLRRQFQAVFQDPYGSLNPR 370
Query: 115 FRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAI 174
+ ++ E L IHGIG+ ER + +AL V + P + R+PH SGGQRQR+AI
Sbjct: 371 LSVEQIVGEGLRIHGIGDA-GERRARVLEALREVGLDEP--CLERYPHEFSGGQRQRIAI 427
Query: 175 ARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWI 234
AR L+L P I+ DEP S LD S++ +++EL++ L+ + G++YL+I+HDL+ R A I
Sbjct: 428 ARTLVLKPALILLDEPTSALDRSVQCQVVELLRRLQRRHGLSYLFISHDLAVVRALAHDI 487
Query: 235 AVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVP 268
V+ GR+VE G A + P HPYTR LL A+P
Sbjct: 488 LVLKDGRVVEQGSAAALFSQPRHPYTRELLGAIP 521
Score = 162 bits (407), Expect = 4e-39
Identities = 100/296 (33%), Positives = 161/296 (53%), Gaps = 23/296 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M +L+VENL + G+ Q V GI F + + ALVGESG GK+
Sbjct: 1 MNRELLRVENLSVAY-----------GDTQ----VVKGIDFSLRAGETLALVGESGSGKS 45
Query: 61 TTGKLVVKLLEPT---DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
T +++LL G + L+G+++ L + + +R+ M+FQ+P +S+NP RI
Sbjct: 46 QTAHALLRLLPGAARLGGSVRLDGEELLALSPQALLAIRGQRIGMVFQEPMTSLNPLQRI 105
Query: 118 YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
+ E L +H A R ++ + LE+ + P + +PH LSGGQRQRV +A A
Sbjct: 106 GRQVGEGLRLHRRLRGAALRGRVL-ELLELAGLEQPRRLLEAYPHQLSGGQRQRVMLAMA 164
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L P ++ADEP + LDV+++ +LEL++ L+ ++G+ L I+HDL+ R AD + VM
Sbjct: 165 LACEPQLLIADEPTTALDVTVQKRLLELLQSLQRRLGMAILLISHDLNLVRRVADRVCVM 224
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVP----EPIPERKDVIKELPIKGEVPS 289
G+IVE + + +P HPYTR L+ A P EP+ R+ ++ + + P+
Sbjct: 225 RDGQIVEENACETLFRSPRHPYTRLLIEAEPGGLAEPVACRETCLEVRALSLDYPA 280
>gb|AAK41518.1| Oligo/dipeptide transport, ATP binding protein . amino-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 245
Score = 195 bits (491), Expect = 6e-49
Identities = 104/238 (43%), Positives = 153/238 (63%), Gaps = 13/238 (5%)
Query: 3 EPILKVENLKKYFPIRR-GFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
E I+KV+N+ +P+ R G L +V AV+ +S E+ K ++F L+GESG GKTT
Sbjct: 5 EIIVKVQNVWIKYPMGRVGLFRKL------YVHAVNDVSLEIKKGEIFGLIGESGSGKTT 58
Query: 62 TGKLVVKLLEPTDGKIYLEGQ-----DVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFR 116
GK +++L+E G IY + D+T+L ++ R+ Q+I QDP+ +++PR
Sbjct: 59 LGKGILRLIETYSGSIYWKVDGGKLVDITKLNDNT-LRRLRKDFQIIQQDPYGALDPRMS 117
Query: 117 IYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIAR 176
+Y++L E L +H + ++E E IYK L +VK+TPPE + + P LSGGQRQRV +AR
Sbjct: 118 VYEILAEGLRLHKLISNKSEEVEQIYKILSIVKLTPPENFANKKPMELSGGQRQRVVVAR 177
Query: 177 ALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWI 234
AL+L P FIVADEP+SMLD S R +ILE + +++ G YL+ITHD+S A Y +D I
Sbjct: 178 ALLLRPKFIVADEPISMLDASTRGQILEFILNDRDQRGTAYLFITHDISIASYVSDRI 235
>pir||D72720 probable oligopeptide transport ATP-binding protein oppD APE0301 -
Aeropyrum pernix (strain K1) >gi|5103940|dbj|BAA79256.1|
(AP000059) 282aa long hypothetical oligopeptide
transport ATP-binding protein oppD [Aeropyrum pernix]
Length = 282
Score = 195 bits (491), Expect = 6e-49
Identities = 109/289 (37%), Positives = 171/289 (58%), Gaps = 21/289 (7%)
Query: 52 VGESGCGKTTTGKLVVKLLEPT----DGKIYLE-----GQDVTQLRTKEEIKAYRRRVQM 102
+GESGCGK+T + + ++L G I L D+ +L E +K + V M
Sbjct: 1 MGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSM 60
Query: 103 IFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPH 162
IFQDP ++++P ++ ++ + H GE R E++ + L+ + + P + ++PH
Sbjct: 61 IFQDPSAALSPVHKV----KKQVTDHVSGEKRRV-EKIAQEILKKLMMPAPHMILEKYPH 115
Query: 163 MLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITH 222
LSGG +QR+ IA +LI P I+ADEP + LDV+++A+IL+++ L+E++ T + ITH
Sbjct: 116 ELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITH 175
Query: 223 DLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKEL- 281
+L+ A AD IAVMY G +VE+ + + PLHPYT+ LL ++P+P V +E+
Sbjct: 176 NLAVAAEIADRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKSIPKP-----HVDEEIE 230
Query: 282 PIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
PI+GE PS + PPGCRFHPRC Y +C +P+L E + V CH
Sbjct: 231 PIRGEPPSLADPPPGCRFHPRCPYV-MDVCMRIKPRLEERAPGRLVACH 278
>sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|2125993|pir||S61404 dipeptide transport protein dppD
- Escherichia coli >gi|349228|gb|AAA23705.1| (L08399)
peripheral membrane protein [Escherichia coli]
>gi|466680|gb|AAB18519.1| (U00039) dppD [Escherichia
coli] >gi|1789963|gb|AAC76566.1| (AE000431) putative
ATP-binding component of dipeptide transport system
[Escherichia coli K12]
Length = 327
Score = 194 bits (488), Expect = 1e-48
Identities = 115/308 (37%), Positives = 167/308 (53%), Gaps = 9/308 (2%)
Query: 27 GEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDG----KIYLEGQ 82
G+ RAVD IS+ V + +V +VGESG GK+ + ++ L++ K+ GQ
Sbjct: 14 GDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73
Query: 83 DVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIY 142
D+ ++ KE V MIFQDP +S+NP + + + E + +H G R+ I
Sbjct: 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAI- 132
Query: 143 KALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEI 202
L V I P + +PH LSGG QRV IA A+ P ++ADEP + LDV+I+A+I
Sbjct: 133 DLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQI 192
Query: 203 LELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRA 262
+EL+ EL++K + + ITHDL+ A I VMY G++VE G A + P HPYT+A
Sbjct: 193 IELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQA 252
Query: 263 LLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYS 322
LL A+PE + K+ + LP G VP + P GC +PRC Y C +EP L +
Sbjct: 253 LLRALPE-FAQDKERLASLP--GVVPGKYDRPNGCLLNPRCPY-ATDRCRAEEPALNMLA 308
Query: 323 HNHWVECH 330
+CH
Sbjct: 309 DGRQSKCH 316
>pir||B72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980562|gb|AAD35168.1|AE001694_4 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 194 bits (487), Expect = 2e-48
Identities = 113/342 (33%), Positives = 187/342 (54%), Gaps = 30/342 (8%)
Query: 5 ILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGK 64
+L+ ENLK Y+ + + G+ ++ V+AVD ++ + + +++ + GESGCGK+T +
Sbjct: 3 VLRTENLKSYY------ILDIFGK-KRVVKAVDDVNISIMENEIYGIAGESGCGKSTLLR 55
Query: 65 LVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAY------RRRVQMIF-----QDPFSSMNP 113
+ +EP + G V +E+ Y RRR++ F Q S +NP
Sbjct: 56 ALFAAIEPPQRIV---GGKVLYRENGKEVDVYSLSDEERRRLRWSFISYVPQGSMSVLNP 112
Query: 114 RFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVA 173
+I + ++ + H G+T+ E E+ + ++ + + P E + +PH LSGG RQRV
Sbjct: 113 VVKIKETFKDFIESHTTGKTKEEAYEMAKEHIKELGL--PIEILNAYPHQLSGGMRQRVT 170
Query: 174 IARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADW 233
IA A +L+P I+ADEP + LDV + +++L+KE++ T + +THD+ D
Sbjct: 171 IALATVLSPKVIIADEPTTALDVVTQRGVVQLLKEIQSSRQNTIILVTHDMGVHANVTDR 230
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNI 293
IA+MY G+I+E G +E+ +NP+HPYT+ L+ + +P+ D + G PS ++
Sbjct: 231 IAIMYAGKIIEEGKTEEIFENPMHPYTKYLIYS----LPKFGDKGRRESAPGSPPSLADL 286
Query: 294 PPGCRFHPRCVY-FKKGLCDTKEPKLIEYSHNHWVECHRVGE 334
PPGC FHPRC + F + C + P L EY H V C V E
Sbjct: 287 PPGCSFHPRCPHAFDR--CKKEVPPLKEYLPGHRVACWLVEE 326
>pir||B72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981773|gb|AAD36295.1|AE001778_16 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 194 bits (487), Expect = 2e-48
Identities = 113/322 (35%), Positives = 190/322 (58%), Gaps = 25/322 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+AE +L V +L+ Y+ G+ V+AVDG+SF++ + ++ + GESGCGK+
Sbjct: 4 VAEVVLDVRDLRIYYRTLYGY-----------VKAVDGVSFDIKRGEILGIAGESGCGKS 52
Query: 61 TTGKLVVKLLEPTD---GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
T G ++ L P G+ L+G+++ L KE K ++ +I Q +MNP +I
Sbjct: 53 TLGNGLILLKPPMKYMGGEAILDGKNIMALSPKELRKVRYEKISIIPQYAMDAMNPTKKI 112
Query: 118 YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
++++ L+H GE+ ++++I + LE+V + ++ + +P LSGG +QR+ + +
Sbjct: 113 KQIIDD--LLHEHGESFERKKDVIEERLEIVNLG--KKVLNMYPIELSGGMKQRMVMVIS 168
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEK--MGVTYLYITHDLSTARYFADWIA 235
++NP ++ADE S LDVS + +++++ E++EK MG + +ITHDLS AD +
Sbjct: 169 TLMNPDVLIADEITSALDVSSQRSVIQMLYEMREKEIMG-SLAFITHDLSVLYQIADKVM 227
Query: 236 VMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPP 295
V+Y GR+ E+ P +++I PLHPYT+ LL+++P+ I R K I G PS +NI P
Sbjct: 228 VLYAGRVAEISPMEDIIQEPLHPYTKMLLSSLPK-IGVRYSQTKLKGIPGYPPSLLNIGP 286
Query: 296 GCRFHPRCVY-FKKGLCDTKEP 316
GCRF RC Y F+K C+ P
Sbjct: 287 GCRFRDRCPYAFEK--CEQDPP 306
>pir||G72049 peptide ABC transporter, ATP-binding protein CP0064 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376984|gb|AAD18822.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189001|gb|AAF37953.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979055|dbj|BAA98890.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 193 bits (485), Expect = 3e-48
Identities = 116/304 (38%), Positives = 177/304 (58%), Gaps = 15/304 (4%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
+P+++ +L K++ +R F + R VD +SF +Y ++ L+GESG GK+T
Sbjct: 7 QPLIQATSLTKHY-YKRSFWFQGKTIAS---RPVDDVSFSLYSRRAVGLIGESGSGKSTL 62
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
+ LL T G + G + +L +K R +V+++FQ+P +S+NPR I D L
Sbjct: 63 ALALAGLLPLTSGFLTFNGTPI-KLHSKHGRHQLRSQVRLVFQNPQASLNPRKTILDSLG 121
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITP-PEEYVGRFPHMLSGGQRQRVAIARALILN 181
LL H + +E+++ E +++ EEY R+PH LSGGQ+QRV+IARAL+
Sbjct: 122 HSLLYHKL----VPKEKVLATVREYLELVGLSEEYFYRYPHQLSGGQQQRVSIARALLGV 177
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P I+ DE VS LD+SI+A+IL ++ EL++K+ +TYL+I+HDL+ R F + +MY G+
Sbjct: 178 PQLIICDEIVSALDLSIQAQILNMLAELQKKLSLTYLFISHDLAVVRSFCTEVFIMYKGQ 237
Query: 242 IVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEV--PSAVNIPPGCRF 299
IVE G K + +P HPYTR LL A +PE D + PI E S + GC F
Sbjct: 238 IVEKGNTKRIFSDPQHPYTRMLLNA---QLPETPDQRQSKPIFQEYHKDSEESCSTGCYF 294
Query: 300 HPRC 303
+ RC
Sbjct: 295 YNRC 298
>sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|628821|pir||S39589 peptide transport system
ATP-binding protein sapF - Salmonella typhimurium
>gi|414212|emb|CAA52288.1| (X74212) sapF [Salmonella
typhimurium]
Length = 268
Score = 192 bits (483), Expect = 5e-48
Identities = 99/265 (37%), Positives = 169/265 (63%), Gaps = 13/265 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M E +L+V NL K F R G+ +Q V AV +SF + ++Q A++GE+G GK+
Sbjct: 1 MVETLLEVRNLSKTFRYRTGWFR------RQTVDAVKPLSFTLRERQTLAIIGENGSGKS 54
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T K++ ++EPT G++ ++ + + +R++MIFQDP +S+NPR RI +
Sbjct: 55 TLAKMLAGMIEPTSGELLIDDHPLHY----GDYSFRSQRIRMIFQDPSTSLNPRQRISQI 110
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
L+ PL ++ E R++++ + + MV + P ++V +PHML+ GQ+QR+ +ARALIL
Sbjct: 111 LDFPLRLNTDLEPEQRRKQIV-ETMRMVGLLP--DHVSYYPHMLAPGQKQRLGLARALIL 167
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P I+ADE ++ LD+S+R++++ LM EL+EK G++Y+Y+T + ++ +D + VM+ G
Sbjct: 168 RPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQG 227
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLA 265
+VE G +V+ +PLH TR L+A
Sbjct: 228 EVVERGSTADVLASPLHELTRRLIA 252
>pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC1094 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655563|gb|AAF94253.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 324
Score = 192 bits (483), Expect = 5e-48
Identities = 106/301 (35%), Positives = 167/301 (55%), Gaps = 10/301 (3%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTD---GKIYLEGQDVTQLRT 89
V AV+ ++F + + + +VGESG GK+ T ++ LL G EG+++ L
Sbjct: 21 VTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKNGKITGSAKFEGKEILNLPE 80
Query: 90 KEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIH-GIGETRAEREELIYKALEMV 148
+E K ++ MIFQDP +S+NP ++ D L E L++H G+G+ A E + + LE V
Sbjct: 81 RELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLMLHKGMGKAEAFEESV--RMLEAV 138
Query: 149 KITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKE 208
KI + + +PH SGG RQRV IA AL+ P ++ADEP + LDV+++A+I+EL+ E
Sbjct: 139 KIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMELLNE 198
Query: 209 LKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVP 268
LK + + ITHDL D + VMY GR +E G ++ NP HPY LL+A+P
Sbjct: 199 LKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYGSVNDIFYNPSHPYAEGLLSAIP 258
Query: 269 EPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVE 328
+ +V+ +P G P+ + +P GC + RC + C + P L+ + ++
Sbjct: 259 R-LDTEGEVLPTIP--GNPPNLLRLPVGCPYQERC-HRVTDRCKREAPILLPFGNSRQRA 314
Query: 329 C 329
C
Sbjct: 315 C 315
>pir||G72283 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981745|gb|AAD36269.1|AE001776_5 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 192 bits (482), Expect = 6e-48
Identities = 120/336 (35%), Positives = 186/336 (54%), Gaps = 25/336 (7%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E ++ +NLK Y+ + L G ++ V+AVD +S ++ +++ + GESGCGK+T
Sbjct: 2 ETLISGKNLKAYYVL------DLWGS-KKVVKAVDNVSLDILPNEIYGIAGESGCGKSTL 54
Query: 63 GKLVVKLLEPT----DGKIY--LEGQ--DVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPR 114
K ++ LL+P DG++ +EG+ +VT L+++ K + I Q +NP
Sbjct: 55 LKALLALLDPPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPV 114
Query: 115 FRIYDVLEEPLLIHGIGETRAEREELIYKALEMVK-ITPPEEYVGRFPHMLSGGQRQRVA 173
R+ D E L H + + +E + A++ +K + PE + FPH LSGG RQRV
Sbjct: 115 KRVRDTFIEILSSH----VKKQTKEFLDLAVQHLKDLGLPERVLNMFPHQLSGGMRQRVT 170
Query: 174 IARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADW 233
IA A +L P I ADEP + LDV + +++L+++++ + T + +THD+
Sbjct: 171 IALATVLKPRVIFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTR 230
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNI 293
+A+MY G+IVE GP E+ NPLHPYTR L+ ++P I ++K I G PS V
Sbjct: 231 MAIMYAGKIVEEGPTLEIFKNPLHPYTRYLIQSLP-AIGDKK---LRSGIPGSPPSLVAP 286
Query: 294 PPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
PPGCRFHPRC + + C +EP L E H V C
Sbjct: 287 PPGCRFHPRCPHASQ-RCREEEPLLKEIKPGHKVAC 321
>gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 326
Score = 191 bits (481), Expect = 8e-48
Identities = 119/343 (34%), Positives = 184/343 (52%), Gaps = 31/343 (9%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +++ +NLK Y+ + F R +RAVD +S +++ +++ + GESGCGK+T
Sbjct: 2 ETLVEGKNLKAYYVLE--FWGKKRT-----IRAVDNVSLKIFSGEIYGIAGESGCGKSTL 54
Query: 63 GKLVVKLLEPT------DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIF-----QDPFSSM 111
K ++ LEP + +L+ + V + KEE RRR++ F Q +
Sbjct: 55 LKTLLANLEPPLRLFGGELNYWLDSKPVNVVSLKEE---ERRRLKWRFISYIPQGSMHVL 111
Query: 112 NPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVK-ITPPEEYVGRFPHMLSGGQRQ 170
NP RI D E L H R ++E + A+E +K + P + FPH LSGG RQ
Sbjct: 112 NPVKRIRDTFMEILKSH----VRRQKETFLEMAIEHLKALGLPSRVLDMFPHQLSGGMRQ 167
Query: 171 RVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYF 230
RV IA A +L P I+ADEP + LDV + +++L+K++++++ T + +THD+
Sbjct: 168 RVTIALATLLKPRIILADEPTTALDVVAQRAVIQLIKKIQKELKNTIVLVTHDMGIHAQV 227
Query: 231 ADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSA 290
+A+MY G+IVE GP E+ PLHPYTR L+ + +P D I G PS
Sbjct: 228 TTRMAIMYAGKIVEEGPTLEIFKEPLHPYTRYLI----QSLPRVGDKQLREGIPGSPPSL 283
Query: 291 VNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
V+ P GCRFHPRC + + C+ +EP +E + H C +G
Sbjct: 284 VSPPSGCRFHPRCPHATQ-RCEEEEPVFLEVNPGHRAACFLLG 325
>pir||D72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980803|gb|AAD35391.1|AE001712_4 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 191 bits (481), Expect = 8e-48
Identities = 120/343 (34%), Positives = 184/343 (52%), Gaps = 31/343 (9%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E I ENL+ Y+ I+ G + +RAVD +S ++ +V+ + GESGCGK+T
Sbjct: 2 EKIAVAENLRAYYFIKSG-------DKTTSIRAVDNVSLHFFENEVYGIAGESGCGKSTL 54
Query: 63 GKLVVKLLEP----TDGKIY--LEGQDVT-QLRTKEEIKAYR-RRVQMIFQDPFSSMNPR 114
K++ ++P DG++ L+G++ + +++K R + V + Q S +NP
Sbjct: 55 LKVLFGEIKPPLKLVDGEVVFKLDGEEYRINSMSLDQLKKIRWKYVSYVPQGSMSVLNPV 114
Query: 115 FRI----YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQ 170
+I DV+EE + E R E ++AL + P + +PH LSGG RQ
Sbjct: 115 RKIRRIFLDVIEEHTSMSR--EEAFSRIESYFEALGL-----PVRVLDSYPHQLSGGMRQ 167
Query: 171 RVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYF 230
RV IA A +LNP I ADEP + LDV ++ +++L+K++ ++ T + +THD+ +
Sbjct: 168 RVTIALATVLNPKVIFADEPTTALDVVVQRGVIQLLKKIHKEQKNTLVIVTHDMGVHAHL 227
Query: 231 ADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSA 290
A I VMY GR++E E+ NPLHPYTR L+ +P D ++ G PS
Sbjct: 228 ATRIGVMYAGRLIEEAETHEIFKNPLHPYTRFLI----NSLPRFGDRSRKEGTPGSPPSL 283
Query: 291 VNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVG 333
N+P GC FHPRC + +C EP LIE + NH V C +VG
Sbjct: 284 ANLPSGCPFHPRCPIADQ-ICMEMEPDLIEVARNHKVACWKVG 325
>sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YEJF
>gi|7445954|pir||C64987 probable oligopeptide transport
protein yejF - Escherichia coli
>gi|405909|gb|AAA16379.1| (U00008) yejF [Escherichia
coli] >gi|1788506|gb|AAC75241.1| (AE000307) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 529
Score = 191 bits (480), Expect = 1e-47
Identities = 105/264 (39%), Positives = 155/264 (57%), Gaps = 8/264 (3%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A +L VE L+ FPIR+G L + V ISF + + LVGESG GK+T
Sbjct: 272 ASTLLDVEQLQVAFPIRKGILKRIVDHNV----VVKNISFTLRAGETLGLVGESGSGKST 327
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
TG +++L+ + G I +GQ + L + ++ R R+Q++FQDP SS+NPR + ++
Sbjct: 328 TGLALLRLIN-SQGSIIFDGQPLQNLN-RRQLLPIRHRIQVVFQDPNSSLNPRLNVLQII 385
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
EE L +H + A+RE+ + + V + P + R+P SGGQRQR+AIARALIL
Sbjct: 386 EEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRH--RYPAEFSGGQRQRIAIARALILK 443
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
P+ I+ DEP S LD +++A+IL L+K L++K + YL+I+HDL R + ++ G
Sbjct: 444 PSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGE 503
Query: 242 IVEMGPAKEVIDNPLHPYTRALLA 265
+VE GP V P YTR LLA
Sbjct: 504 VVEQGPCARVFATPQQEYTRQLLA 527
Score = 160 bits (401), Expect = 2e-38
Identities = 101/280 (36%), Positives = 152/280 (54%), Gaps = 21/280 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAV-DGISFEVYKQQVFALVGESGCGK 59
M + +L +ENL F QQ VR V + +S ++ + ALVGESG GK
Sbjct: 1 MTQTLLAIENLSVGF------------RHQQTVRTVVNDVSLQIEAGETLALVGESGSGK 48
Query: 60 TTTGKLVVKLL-----EPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPR 114
+ T +++LL E G I G+ + + ++ MIFQ+P S+NP
Sbjct: 49 SVTALSILRLLPSPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPL 108
Query: 115 FRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAI 174
+ L E L +H A R E++ L+ V I + + +PH LSGG+RQRV I
Sbjct: 109 HTLEKQLYEVLSLHRGMRREAARGEIL-NCLDRVGIRQAAKRLTDYPHQLSGGERQRVMI 167
Query: 175 ARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWI 234
A AL+ P ++ADEP + LDVS++A+IL+L++EL+ ++ + L+ITH+LS R A +
Sbjct: 168 AMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRV 227
Query: 235 AVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVP--EPIP 272
AVM GR VE A + +P HPYT+ LL + P +P+P
Sbjct: 228 AVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVP 267
>sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|7445934|pir||E64877 peptide transport system
ATP-binding protein sapF - Escherichia coli
>gi|470683|gb|AAA17671.1| (U08190) Shows similarity with
ATP-binding proteins from other ABC-transport operons,
Swiss Prot Accession Numbers P24137, P08007, P04285,
P24136 [Escherichia coli] >gi|1279404|emb|CAA65941.1|
(X97282) SapF protein [Escherichia coli]
>gi|1742103|dbj|BAA14843.1| (D90766) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1742112|dbj|BAA14851.1| (D90767) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1787547|gb|AAC74372.1| (AE000227) putative
ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 268
Score = 190 bits (477), Expect = 2e-47
Identities = 99/265 (37%), Positives = 168/265 (63%), Gaps = 13/265 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M E +L+V NL K F R G+ +Q V AV +SF + + Q A++GE+G GK+
Sbjct: 1 MIETLLEVRNLSKTFRYRTGWFR------RQTVEAVKPLSFTLREGQTLAIIGENGSGKS 54
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T K++ ++EPT G++ ++ + + +R++MIFQDP +S+NPR RI +
Sbjct: 55 TLAKMLAGMIEPTSGELLIDDHPLHF----GDYSFRSQRIRMIFQDPSTSLNPRQRISQI 110
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
L+ PL ++ E R+++I + + MV + P ++V +PHML+ GQ+QR+ +ARALIL
Sbjct: 111 LDFPLRLNTDLEPEQRRKQII-ETMRMVGLLP--DHVSYYPHMLAPGQKQRLGLARALIL 167
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P I+ADE ++ LD+S+R++++ LM EL+EK G++Y+Y+T + ++ +D + VM+ G
Sbjct: 168 RPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQG 227
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLA 265
+VE G +V+ +PLH T+ L+A
Sbjct: 228 EVVERGSTADVLASPLHELTKRLIA 252
>sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075084|pir||C64184 oligopeptide transport
ATP-binding protein oppD - Haemophilus influenzae
(strain Rd KW20) >gi|1574676|gb|AAC22775.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppD)
[Haemophilus influenzae Rd]
Length = 323
Score = 190 bits (477), Expect = 2e-47
Identities = 114/330 (34%), Positives = 173/330 (51%), Gaps = 22/330 (6%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+L V+NL F P V AV+ ++F + +VGESG GK+ T
Sbjct: 3 PLLDVKNLYVRFKT-----------PDGVVTAVNDLNFTLNAGSTLGIVGESGSGKSQTA 51
Query: 64 KLVVKLLEPT---DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
++ LL +G EG+++ L E K ++ MIFQDP +S+NP +I +
Sbjct: 52 FALMGLLAANGEVEGSAIFEGKELVNLPNAELNKIRAEQISMIFQDPMTSLNPYMKIGEQ 111
Query: 121 LEEPLLIH-GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
L E L +H G + A E + K L+ VK+ ++ +G +PH SGG RQRV IA AL+
Sbjct: 112 LMEVLQLHKGYDKQTAFAESV--KMLDAVKMPEAKKRMGMYPHEFSGGMRQRVMIAMALL 169
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
P ++ADEP + LDV+++A+I+ L+ ELK + + ITHDL D + VMY
Sbjct: 170 CRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDQVMVMYA 229
Query: 240 GRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRF 299
GR +E G A+++ +P HPY+ L+ A+P + ++ I G P+ +++P GC F
Sbjct: 230 GRTMEYGTAEQIFYHPTHPYSIGLMDAIPRLDGNEEHLV---TIPGNPPNLLHLPKGCPF 286
Query: 300 HPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
PRC F C PKL ++H C
Sbjct: 287 SPRC-QFATEQCQI-APKLTTFNHGQLRNC 314
>pir||E70141 oligopeptide transport ATP-binding protein oppD - Lyme disease
spirochete >gi|2281462|gb|AAC46287.1| (AF000366)
oligopeptide permease homolog D [Borrelia burgdorferi]
>gi|2688243|gb|AAC66722.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Borrelia
burgdorferi]
Length = 290
Score = 190 bits (477), Expect = 2e-47
Identities = 106/274 (38%), Positives = 161/274 (58%), Gaps = 25/274 (9%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E IL+++NL F ++ + V ++ V + ++ A+VGESG GK+ T
Sbjct: 4 ENILEIKNLTIEFRLKH-----------TTIHPVSNVNLSVKRGEIRAIVGESGSGKSVT 52
Query: 63 GKLVVKLLEPT-----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
++KLL G+I E QD+ +L KE +K ++ MIFQDP +S+NP RI
Sbjct: 53 SMAILKLLPELTTVYKSGEILFENQDLLKLSEKELLKIRGNKISMIFQDPMTSLNPFLRI 112
Query: 118 YDVLEEPLLIH-GIGETRAEREELIYKALEMVK---ITPPEEYVGRFPHMLSGGQRQRVA 173
LEE +++H G+G+ A+ KA+EM+K + EE + FPH SGG RQRV
Sbjct: 113 STQLEETIILHQGLGKKEAKE-----KAIEMLKTVGVVNAEERIKHFPHQFSGGMRQRVM 167
Query: 174 IARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADW 233
IA AL +P+ ++ADEP + LDV+I+ +IL L+K L +K + ++ITHDL+ D
Sbjct: 168 IAMALSCHPSLLIADEPTTALDVTIQEQILLLIKNLSKKFNTSTIFITHDLAVVAEICDT 227
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
++VMY G+IVE G +E+ +NP HPYT LL ++
Sbjct: 228 VSVMYQGKIVEEGTVEEIFNNPKHPYTIGLLKSI 261
>pir||F71483 probable dipeptide transport - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329143|gb|AAC68285.1| (AE001339) ABC
Transport ATPase [Chlamydia trachomatis]
Length = 321
Score = 189 bits (476), Expect = 3e-47
Identities = 110/332 (33%), Positives = 177/332 (53%), Gaps = 21/332 (6%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A+P+L+V+NL SL F+ AVD +SF+V+ Q A++GESG GK+
Sbjct: 3 AQPLLQVKNLS----------VSLNRNRVSFL-AVDSLSFDVFPGQTLAIIGESGSGKSI 51
Query: 62 TGKLVVKLLEPTD----GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
T + +++LL + G+ +++ + + ++ MIFQ+P +S +P F I
Sbjct: 52 TAQSLMQLLPEENFSLSGEALFNKENLLDRKNTNAKVLFGSKISMIFQNPLASFDPVFTI 111
Query: 118 YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
E + H +G + E + L PE + +PH LSGG QR+AIA
Sbjct: 112 EQQFHEVIRTH-LGISNKMAHEQMLAVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMT 170
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L+ +P ++ADEP + LDVS++ +IL+L+K L++K G++ L ITHD+ AD + V+
Sbjct: 171 LLTSPDLLIADEPTTALDVSVQYQILQLLKTLQKKTGMSLLIITHDMGVVAEMADDVFVL 230
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGC 297
Y GR+ E +E+ +P HPYT LLA+ P ++ V PI G+ P ++P GC
Sbjct: 231 YAGRMAEYSSVQEIFHSPAHPYTEDLLASRPSQYRQQTFV----PIAGQPPHYTSLPKGC 286
Query: 298 RFHPRCVYFKKGLCDTKEPKLIEYSHNHWVEC 329
+ PRC + +C K P + + +H V C
Sbjct: 287 CYSPRC-RKAQPICFEKSPDSLSLNDHHRVRC 317
>pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655050|gb|AAF93783.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 327
Score = 188 bits (473), Expect = 7e-47
Identities = 108/304 (35%), Positives = 176/304 (57%), Gaps = 15/304 (4%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP----TDGKIYLEGQDVTQLR 88
VRA + +SF++ +VF L GESGCGK+T +++L +P T G++ G+D+ +
Sbjct: 22 VRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKY- 80
Query: 89 TKEEIKAYR-RRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEM 147
+ E ++A+R + + M+FQ +++NP + + + + H TR + + LE+
Sbjct: 81 SDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRH-TNMTREQAKRRAEGLLEI 139
Query: 148 VKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMK 207
V I P + +PH SGG RQR+ IA AL LNP I+ DEP + LDV ++ EIL+ +
Sbjct: 140 VDIHPSR--LNDYPHQFSGGMRQRLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIY 197
Query: 208 ELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
LKE+ G + L+ITHDLS F+D I +MY G ++E+ P+K++++ P HPYT+ L ++
Sbjct: 198 ALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQILETPYHPYTKGLGSSF 257
Query: 268 PEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLI-EYSHNHW 326
P P+ K + +P G + ++IP GCRF RC + TK P ++ + H +
Sbjct: 258 P-PLTGPKTKLTGIP--GNPLNLLDIPQGCRFQARCDRVHEAC--TKVPTVLRQIEHGRF 312
Query: 327 VECH 330
CH
Sbjct: 313 SNCH 316
>pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190098|gb|AAF38947.1| (AE002273) peptide ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 321
Score = 187 bits (470), Expect = 2e-46
Identities = 112/334 (33%), Positives = 176/334 (52%), Gaps = 25/334 (7%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A+P+L+V+NL SL F V+ +SF V+ Q A++GESG GK+
Sbjct: 3 AQPLLQVKNLS----------VSLNRNTVSFP-VVEDLSFNVFPGQTLAIIGESGSGKSI 51
Query: 62 TGKLVVKLLEPT----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
T + +++LL G+ +L +++ + + ++ MIFQ+P +S +P F I
Sbjct: 52 TAQSLMQLLPEEYFSISGEAFLHKENLLDRKNLLSKTLFGSKMAMIFQNPLASFDPVFTI 111
Query: 118 YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
E + H + T+ E I L PE + +PH LSGG QR+AIA
Sbjct: 112 EQQFHEVIRTH-LDLTKKVAHEQIVTVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMT 170
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L+ +P ++ADEP + LDVS++ +IL+L+K L++K G++ L ITHD+ AD + V+
Sbjct: 171 LLTSPDLLIADEPTTALDVSVQYQILQLLKTLQKKTGMSLLVITHDMGVVAEMADDVFVL 230
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGC 297
Y GR+ E +++ +P HPYT+ LLA+ P ++ V PI G P N+P GC
Sbjct: 231 YAGRMAEYSSVQDIFHSPAHPYTKDLLASRPSQYKKQTFV----PISGHPPHYTNLPKGC 286
Query: 298 RFHPRCVYFKKGL--CDTKEPKLIEYSHNHWVEC 329
+ PRC +K L C + P I + +H V C
Sbjct: 287 CYSPRC---QKALPICYKQSPHAISLNDHHHVRC 317
>dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli] >gi|1805527|dbj|BAA16041.1| (D90852)
Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 337
Score = 186 bits (467), Expect = 4e-46
Identities = 110/318 (34%), Positives = 170/318 (52%), Gaps = 19/318 (5%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A+ +L V++L+ F P V AV+ ++F + + +VGESG GK+
Sbjct: 16 ADALLNVKDLRVTF-----------STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQ 64
Query: 62 TGKLVVKLLEPTD---GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIY 118
T ++ LL G G+++ L E K ++ MIFQDP +S+NP R+
Sbjct: 65 TAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVG 124
Query: 119 DVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
+ L E L++H ++AE E + L+ VK+ + + +PH SGG RQRV IA AL
Sbjct: 125 EQLMEVLMLHK-NMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL 183
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
+ P ++ADEP + LDV+++A+I+ L+ ELK + + ITHDL D + VMY
Sbjct: 184 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMY 243
Query: 239 LGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCR 298
GR +E G A++V P+HPY+ LL AVP E + + L I G P+ + +P GC
Sbjct: 244 AGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLDAEGETM---LTIPGNPPNLLRLPKGCP 300
Query: 299 FHPRCVYFKKGLCDTKEP 316
F PRC + + +C + P
Sbjct: 301 FQPRCPHAME-ICSSAPP 317
>sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442530|pir||A64872 oligopeptide transport
ATP-binding protein oppD - Escherichia coli
>gi|1787499|gb|AAC74328.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 337
Score = 186 bits (467), Expect = 4e-46
Identities = 110/318 (34%), Positives = 170/318 (52%), Gaps = 19/318 (5%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A+ +L V++L+ F P V AV+ ++F + + +VGESG GK+
Sbjct: 16 ADALLNVKDLRVTF-----------STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQ 64
Query: 62 TGKLVVKLLEPTD---GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIY 118
T ++ LL G G+++ L E K ++ MIFQDP +S+NP R+
Sbjct: 65 TAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVG 124
Query: 119 DVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
+ L E L++H ++AE E + L+ VK+ + + +PH SGG RQRV IA AL
Sbjct: 125 EQLMEVLMLHK-NMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL 183
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
+ P ++ADEP + LDV+++A+I+ L+ ELK + + ITHDL D + VMY
Sbjct: 184 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMY 243
Query: 239 LGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCR 298
GR +E G A++V P+HPY+ LL AVP E + + L I G P+ + +P GC
Sbjct: 244 AGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLDAEGETM---LTIPGNPPNLLRLPKGCP 300
Query: 299 FHPRCVYFKKGLCDTKEP 316
F PRC + + +C + P
Sbjct: 301 FQPRCPHAME-ICSSAPP 317
>gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [Halobacterium sp.
NRC-1]
Length = 363
Score = 182 bits (456), Expect = 7e-45
Identities = 111/334 (33%), Positives = 172/334 (51%), Gaps = 23/334 (6%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E IL + NL+ F + +RAVDGIS + + +VGESG GK+ T
Sbjct: 16 ESILSIRNLQTVFRT-----------DHEHIRAVDGISLSISPGETLGIVGESGSGKSVT 64
Query: 63 GKLVVKLLEPT-----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
+ ++ L++ + I +G ++T+L + + V MIFQDP S+NP + +
Sbjct: 65 ARSIMGLVDAPGEVLPESSIVFDGTELTELSADQYQEVRGSGVGMIFQDPLKSLNPVYTV 124
Query: 118 YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
+ + E L I+ G T E ++ LE V I PE + +P+ SGG RQR IA
Sbjct: 125 GNQIREALRINR-GITGQEATDVAIDLLEDVAIPDPERRLDEYPNEFSGGMRQRAVIAMM 183
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L +P ++ DEP + LDV+I+A+I+EL+++++ + + L+ITHD+ +D + VM
Sbjct: 184 LACDPDVLICDEPTTALDVTIQAQIVELLQDIQAERDLAILFITHDMGVIAEISDRVNVM 243
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGC 297
Y G VE P +E+ NP HPYT+ LL A+P D + I+G+VP+ C
Sbjct: 244 YAGEFVEKAPVEELFANPKHPYTQGLLDAIP---GTSVDDERLNTIEGDVPTPNQPATDC 300
Query: 298 RFHPRCVYFKKGLCDTKEPKLIEYS--HNHWVEC 329
RF PRC + C P + S H+H C
Sbjct: 301 RFAPRCPKAFED-CTEVHPTHVSVSDTHDHSTAC 333
>sp|P50980|OPPD_LACLC OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|495177|gb|AAB00533.1| (U09553) ATP binding protein
[Lactococcus lactis]
Length = 338
Score = 180 bits (453), Expect = 2e-44
Identities = 113/303 (37%), Positives = 169/303 (55%), Gaps = 11/303 (3%)
Query: 31 QFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTD----GKIYLEGQDVTQ 86
+F +A+ I + + +V A+VGESG GK+T V+ L P G I L+ ++V
Sbjct: 21 KFQKAIYDIDLSLRRGEVLAIVGESGSGKSTLATAVMGLHNPNQTQITGSILLDEEEVIG 80
Query: 87 LRTKEEIKAYR-RRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKAL 145
+T + + + R +V MIFQ+P +++NP +I ++E L +H + + E I++ L
Sbjct: 81 -KTGDSMASIRGSKVGMIFQNPLTALNPLMKIGQQIKEMLAVHDVYPEN-QYESRIFQLL 138
Query: 146 EMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILEL 205
E V I P+ V +FPH LSGG RQRV IA A+ +P I+ADEP + LDV+I+A+IL+L
Sbjct: 139 EQVGIPNPKRVVNQFPHQLSGGMRQRVMIAIAIANDPDLIIADEPTTALDVTIQAQILDL 198
Query: 206 MKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLA 265
+ E+++K + ITHDL AD +AVMY G++VE +E+ NP HPYTR+LL
Sbjct: 199 ILEIQKKKNAGVILITHDLGVVAEVADTVAVMYAGQLVEKASVEELFQNPKHPYTRSLLR 258
Query: 266 AVPEPIPERKDVIKELPIKGEVPSAVNIP-PGCRFHPRCVYFKKGLCDTKEPKLIEYSHN 324
+ P D+ I G VPS I F R + K+ K+ E S N
Sbjct: 259 SNPSAETVSDDL---YVIPGSVPSLSEIEYDKDLFLARVPWMKEEAQKVISEKMTEISSN 315
Query: 325 HWV 327
H+V
Sbjct: 316 HFV 318
>sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDP
>gi|7445758|pir||G64901 ABC-type transport protein b1484
- Escherichia coli >gi|1742424|dbj|BAA15139.1| (D90789)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1742435|dbj|BAA15149.1| (D90790)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1787759|gb|AAC74557.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 328
Score = 180 bits (452), Expect = 2e-44
Identities = 111/310 (35%), Positives = 168/310 (53%), Gaps = 24/310 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M +P+L ++ L FP GF V A++ +S ++ + ++ LVGESG GK+
Sbjct: 1 MTQPVLDIQQLHLSFP---GFNGD--------VHALNNVSLQINRGEIVGLVGESGSGKS 49
Query: 61 TTGKLVVKLLEPTD------GKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPR 114
T L+++LL PT G+I L G+DV R K+ + RV MIFQ+P +++NP
Sbjct: 50 VTAMLIMRLL-PTGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPT 108
Query: 115 FRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAI 174
RI + + + H R R + I LE ++I E + R+P LSGG RQRV I
Sbjct: 109 RRIGLQMMDVIRHHQPISRREARAKAI-DLLEEMQIPDAVEVMSRYPFELSGGMRQRVMI 167
Query: 175 ARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWI 234
A A P I+ADEP + LDV+++ ++L L+K G L+I+HD++ D +
Sbjct: 168 ALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSV 227
Query: 235 AVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE-PIPERKDVIKELPIKGEVPSAVNI 293
VMY G ++E G +VI +P HPYT LL PE +P + ++ +P G VP+ ++
Sbjct: 228 YVMYAGSVIESGVTADVIHHPRHPYTIGLLQCAPEHGVP--RQLLPAIP--GTVPNLTHL 283
Query: 294 PPGCRFHPRC 303
P GC F RC
Sbjct: 284 PDGCAFRDRC 293
>sp|Q07733|OPPD_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075749|pir||A53290 oligopeptide transport protein
oppD - Lactococcus lactis subsp. lactis
>gi|308850|gb|AAA16163.1| (L18760) ATP binding protein
[Lactococcus lactis]
Length = 338
Score = 180 bits (451), Expect = 3e-44
Identities = 113/303 (37%), Positives = 169/303 (55%), Gaps = 11/303 (3%)
Query: 31 QFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTD----GKIYLEGQDVTQ 86
+F +A+ I + + +V A+VGESG GK+T V+ L P G I L+ ++V
Sbjct: 21 KFQKAIYDIDLSLKRGEVLAIVGESGSGKSTFATAVMGLHNPNQTQITGSILLDDEEVIG 80
Query: 87 LRTKEEIKAYR-RRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKAL 145
+T + + + R +V MIFQ+P +++NP +I ++E L +H + + E I++ L
Sbjct: 81 -KTGDSMASIRGSKVGMIFQNPLTALNPLMKIGQQIKEMLAVHDVYPEN-QYESRIFQLL 138
Query: 146 EMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILEL 205
E V I P+ V +FPH LSGG RQRV IA A+ +P I+ADEP + LDV+I+A+IL+L
Sbjct: 139 EQVGIPNPKRVVNQFPHQLSGGMRQRVMIAIAIANDPDLIIADEPTTALDVTIQAQILDL 198
Query: 206 MKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLA 265
+ E+++K + ITHDL AD +AVMY G++VE +E+ NP HPYTR+LL
Sbjct: 199 ILEIQKKKNAGVILITHDLGVVAEVADTVAVMYAGQLVEKTSVEELFQNPKHPYTRSLLR 258
Query: 266 AVPEPIPERKDVIKELPIKGEVPSAVNIP-PGCRFHPRCVYFKKGLCDTKEPKLIEYSHN 324
+ P D+ I G VPS I F R + K+ K+ E S N
Sbjct: 259 SNPSAETVSDDL---YVIPGSVPSLSKIEYDKDLFLARVPWMKEEAQKVISEKMTEISSN 315
Query: 325 HWV 327
H+V
Sbjct: 316 HFV 318
>pir||T35982 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464267|emb|CAB37470.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 398
Score = 180 bits (451), Expect = 3e-44
Identities = 114/303 (37%), Positives = 159/303 (51%), Gaps = 10/303 (3%)
Query: 35 AVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP---TDGKIYLEGQDVTQLRTKE 91
AV G+ + + + GESGCGK+T +++LL P G+I L+G+DV ++
Sbjct: 19 AVRGVDLTLAAGEKLGVAGESGCGKSTLALALLRLLPPGARVGGEILLDGEDVLTMKWGR 78
Query: 92 EIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKIT 151
++FQ S+N R+ D + EP+L+H T A + LE V +
Sbjct: 79 VRAVRWAGASIVFQGAMHSLNAVHRVGDQIAEPILLHR-RTTAAGARRRAGELLEQVGL- 136
Query: 152 PPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKE 211
P +PH LSGGQRQRV IA AL +P IVADEP + LDV I+A+IL L++ L
Sbjct: 137 -PAARASAYPHELSGGQRQRVMIAMALACDPRLIVADEPTTALDVMIQAQILRLIEGLVG 195
Query: 212 KMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE-P 270
+ V + I+HDL+ D +AVMY GR+VE GPA++V D+ HPY RAL A P
Sbjct: 196 EQDVGLIMISHDLAVLADTCDRLAVMYAGRVVEEGPARQVYDDARHPYGRALSEAFPTIG 255
Query: 271 IPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
P + + LP G+ P +P GC FHPRC LC T++ L + C
Sbjct: 256 DPASRFAPRGLP--GDPPDPAAVPSGCAFHPRCP-VALDLCATQDQPLRDAGARRRAACV 312
Query: 331 RVG 333
VG
Sbjct: 313 HVG 315
>dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [Ochrobactrum
anthropi]
Length = 334
Score = 179 bits (450), Expect = 4e-44
Identities = 118/342 (34%), Positives = 176/342 (50%), Gaps = 28/342 (8%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+L V+NL F RG + A +G+S ++ + +VGESG GK+
Sbjct: 5 PLLSVDNLNVTFSTPRGNVV-----------ANNGVSLQIAGGETLGIVGESGSGKSVLC 53
Query: 64 KLVVKLLEPTDGKIYLE-----GQDVTQLRTKEEIKAYR-RRVQMIFQDPFSSMNPRFRI 117
+ ++ LL I + G+++ L T E++A R + + M+FQ+P SS+NP + I
Sbjct: 54 RALLGLLPSPPATIRADRLVFAGRNMLSL-TAAEMRAVRGQEISMVFQNPMSSLNPVWPI 112
Query: 118 YDVLEEPLLIH-GIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIAR 176
D + E L +H GIG +A + AL V I PE V +PH SGG QR IA
Sbjct: 113 GDQISEGLRVHRGIGNAQARSAAIA--ALRRVGIPSPEIRVDDYPHQWSGGMAQRAVIAM 170
Query: 177 ALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAV 236
A+I P ++ADEP + LDV+I+ +IL L+ +L+ + G+ + ++HD+S D +AV
Sbjct: 171 AMIGEPKLLLADEPTTALDVTIQDQILSLLMQLQRETGMAIVLVSHDMSVISETCDNVAV 230
Query: 237 MYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPG 296
MY G +VE G ++ P HPYT LL ++P PI R D + +P G+ P + PG
Sbjct: 231 MYAGGVVETGRTTDIFRTPSHPYTAGLLNSIP-PIKGRADKLASIP--GQPPDLARLGPG 287
Query: 297 CRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECH---RVGEI 335
C F RC C T+ L + CH RV EI
Sbjct: 288 CPFFERC-SVASAECQTRPVALKRLASGQQTACHFPERVPEI 328
>emb|CAA10913.1| (AJ222649) sapF [Erwinia chrysanthemi]
Length = 269
Score = 176 bits (441), Expect = 4e-43
Identities = 99/266 (37%), Positives = 160/266 (59%), Gaps = 13/266 (4%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M E +L+ NL K F R G+ +Q V+AV +SF + ++Q A++GE+G GK+
Sbjct: 1 MVETLLEARNLTKTFRYRTGWFR------RQHVQAVKSVSFTLRERQTLAIIGENGSGKS 54
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T K++ ++ PT G++ ++ + + +R++M QD +S+NPR RI +
Sbjct: 55 TLAKMLSGVIPPTSGELVIDDHPLQY----GDYHYRSQRIRMSIQDSATSLNPRQRIGQL 110
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
LE PL ++ T ERE+ I AL V + ++ +PH L+ GQ+QR+ +ARALIL
Sbjct: 111 LELPLRLN-TDLTPQEREKAINLALRQVGLRA--DHATYYPHALAPGQKQRIGLARALIL 167
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P IVADE ++ LD+S+R++I+ LM EL+EK G++Y+Y+T L ++ +D I VM G
Sbjct: 168 QPKVIVADEVLASLDMSVRSQIINLMLELQEKHGISYIYVTQHLGMMKHISDQILVMQAG 227
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAA 266
+VE G +V+ PLH T+ L+A+
Sbjct: 228 EVVERGSTADVLAAPLHDLTKRLIAS 253
>pir||B81746 peptide ABC transporter, ATP-binding protein TC0061 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190097|gb|AAF38946.1| (AE002273) peptide ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 290
Score = 175 bits (439), Expect = 7e-43
Identities = 100/275 (36%), Positives = 166/275 (60%), Gaps = 9/275 (3%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+++ L K++ +R F + + ++ +SF + K ++ L+GESG GKTT
Sbjct: 5 PLIQASRLTKHY-YKRSFWFQ---QKKIATTPLNNVSFTIPKHKIVGLIGESGSGKTTLA 60
Query: 64 KLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEE 123
+ L+ T G + L + V L +K+ + +V+M+FQ+P SS+NPR I+D L
Sbjct: 61 LGLAGLIPLTSGHLTLNDKAVP-LHSKQGRQYLSSQVRMVFQNPRSSLNPRKTIFDTLSH 119
Query: 124 PLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPT 183
LL H + + + + +AL +V I+ +Y+ +PH LSGGQ QR++IARAL+ P
Sbjct: 120 SLLYHRL-VAKTDLGATVERALSLVGIST--DYLYAYPHQLSGGQLQRISIARALLGAPQ 176
Query: 184 FIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIV 243
I+ DE VS LD+S++A+IL + L+++ +TYL+I+HDL+ R F + +MY G++V
Sbjct: 177 LIICDEVVSALDLSMQAQILNTLTSLQQQAQLTYLFISHDLAVVRSFCSELIIMYKGQLV 236
Query: 244 EMGPAKEVIDNPLHPYTRALL-AAVPEPIPERKDV 277
E GP +++ +P HPYTR LL + +PE R+D+
Sbjct: 237 ESGPTEQIFCHPQHPYTRMLLHSQLPEFPEHRRDL 271
>sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIE
>gi|98018|pir||S11152 oligopeptide transport protein
amiE - Streptococcus pneumoniae
>gi|47346|emb|CAA35216.1| (X17337) AmiE protein
[Streptococcus pneumoniae]
Length = 355
Score = 173 bits (434), Expect = 3e-42
Identities = 107/299 (35%), Positives = 162/299 (53%), Gaps = 10/299 (3%)
Query: 35 AVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPT----DGKIYLEGQDVTQLRTK 90
A+ G+S E+ + +V ALVGESG GK+ K +LE +G I GQD+T L +
Sbjct: 27 AIRGVSLELVEGEVLALVGESGSGKSVLTKTFRGMLEENGRIAEGSIDYRGQDLTALSSH 86
Query: 91 EEIKAYR-RRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVK 149
++ + R ++ IFQDP +S++P I + E ++ H G+T E +EL + V
Sbjct: 87 KDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQ-GKTAKEAKELAIDYMNKVG 145
Query: 150 ITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKEL 209
I + +P SGG RQR+ IA AL P ++ DEP + LDV+I+A+I++L+K L
Sbjct: 146 IPDADRRFNEYPFQYSGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSL 205
Query: 210 KEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE 269
+ + T ++ITHDL AD +AVMY G IVE G +EV +P HPYT +LL+++P+
Sbjct: 206 QNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVEYGTVEEVFYDPRHPYTWSLLSSLPQ 265
Query: 270 PIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVE 328
++ D+ I G PS G F R Y + + K P+ S HW +
Sbjct: 266 LADDKGDLYS---IPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQ-FSVSETHWAK 320
>pir||B64551 oligopeptide ABC transporter, ATP-binding protein - Helicobacter
pylori (strain 26695) >gi|2313342|gb|AAD07317.1|
(AE000544) oligopeptide ABC transporter, ATP-binding
protein (oppD) [Helicobacter pylori 26695]
Length = 516
Score = 171 bits (429), Expect = 1e-41
Identities = 100/262 (38%), Positives = 154/262 (58%), Gaps = 10/262 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L+V++ Y+ +R F SL+ + ++F + ++ ++GESG GK++
Sbjct: 261 ETLLEVKDFSVYYLQKRFFRPSLKKP------LIASVNFSLKAKENIGIIGESGSGKSSL 314
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
++KL G+ + GQ V L +K K YR+ +QM+FQDP++S+NPR I +L
Sbjct: 315 ALGLLKLAL-NSGEEKILGQSVGSLNSKA-FKPYRKILQMVFQDPYASLNPRLSIQSILT 372
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E L ++ E L LE V ++ E + + + LSGG+RQRVAIARA+ L P
Sbjct: 373 EALRFAYPKASKEEWHHLAKLCLEEVCLS--HELLNSYAYELSGGERQRVAIARAIALKP 430
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
I+ DEP S LD SI+ +LEL+ +L+EK ++YL+I+HDL + F D + V+ G++
Sbjct: 431 KIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSYLFISHDLDVIKAFCDKVLVISEGKV 490
Query: 243 VEMGPAKEVIDNPLHPYTRALL 264
VEM KEV DNP H YT+ LL
Sbjct: 491 VEMNTIKEVFDNPKHAYTKRLL 512
Score = 139 bits (347), Expect = 4e-32
Identities = 78/246 (31%), Positives = 138/246 (55%), Gaps = 9/246 (3%)
Query: 35 AVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKL---LEPTDGKIYLEGQDVTQLRTKE 91
++ I+ + + A+VGESG GK++ ++++L +P +G++ E ++ L+ E
Sbjct: 16 SLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGEVLFETTNL--LKESE 73
Query: 92 EIKAYRR--RVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVK 149
E + R + I QDP SS+NP +I + E +H ++ +E + A++ V+
Sbjct: 74 EFMQHLRGNAIAYIAQDPLSSLNPLHKIGKQMSEAYFLHYKNASKTLLKEQVLNAMKQVQ 133
Query: 150 ITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKEL 209
+ E+++ R+P+ LSGGQRQRV IA +I P ++ DEP + LD I+ +IL+L K+L
Sbjct: 134 LD--EKFLDRYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLPKQL 191
Query: 210 KEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE 269
+ + L+I+HDL + AD + V+ G IVE K++ ++P H Y++ L+ A
Sbjct: 192 SAEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETNLTKDLFNDPKHEYSKLLIQASNL 251
Query: 270 PIPERK 275
P K
Sbjct: 252 PAKNLK 257
>emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport system, ATP-binding
protein appD [Thermoplasma acidophilum]
Length = 298
Score = 170 bits (427), Expect = 2e-41
Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 12/300 (4%)
Query: 39 ISFEVYKQQVFALVGESGCGKTTTGKLVVKLL----EPTDGKIYLEGQDVTQLRTKEEIK 94
++ V K + + GESG GK+T + + + L E T G++YL+ QD+ ++ ++ +
Sbjct: 1 MNLRVRKGIILGIAGESGSGKSTLAQAIYRSLKYPGEITSGQVYLDDQDILRINGEDLRR 60
Query: 95 AYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPE 154
R I Q +++NP RI + L+ HG+ + E+ I A++MV++ E
Sbjct: 61 IRATRFSFIPQAAMNALNPVKRIRYQFYDLLIAHGLQPEK--NEDRIQAAIKMVRLR--E 116
Query: 155 EYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMG 214
+ FPH LSGG RQRV IA +L+L P ++ DEP + LDV ++ EIL+ +K ++ + G
Sbjct: 117 NVLESFPHELSGGMRQRVVIAMSLLLRPDLVILDEPTTGLDVLVQHEILKDLKAIQRQSG 176
Query: 215 VTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPER 274
+T ++ITHDLS AD IA++Y G IVE GP E++++P HPY LL ++P +R
Sbjct: 177 LTMIFITHDLSILYEIADEIAMIYAGEIVEFGPRDEMLNDPQHPYNFLLLRSMPRIGAKR 236
Query: 275 KDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECHRVGE 334
+ + G N GC+F+ RC F C +K P+L H+ C R E
Sbjct: 237 GTGYRLIGNPGNFREDFN---GCQFYTRCP-FSVPQCVSKHPELTSDDGRHFRRCLRYPE 292
>pir||E71957 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
J99) >gi|4154751|gb|AAD05811.1| (AE001461) ABC
transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 516
Score = 169 bits (424), Expect = 4e-41
Identities = 103/262 (39%), Positives = 155/262 (58%), Gaps = 10/262 (3%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L+V++ Y+ +R F SL+ + + +VD F + ++ ++GESG GK++
Sbjct: 261 ETLLEVKDFSVYYLQKRFFRPSLK---KPLIASVD---FSLKAKENIGIIGESGSGKSSL 314
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLE 122
++KL G+ + GQ V L +K K YR+ +QM+FQDP++S+NPR I +L
Sbjct: 315 ALGLLKLAL-NSGEEKILGQSVGLLNSKA-FKPYRKILQMVFQDPYASLNPRLSIQSILI 372
Query: 123 EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNP 182
E L ++ E L LE V + P E + + + LSGG+RQRVAIARA+ L P
Sbjct: 373 EALRFAYPKASQQEWHHLAELCLEEVCLNP--ELLNFYAYELSGGERQRVAIARAIALKP 430
Query: 183 TFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRI 242
I+ DEP S LD SI+ +LEL+ L+EK ++YL+I+HDL + F D + V+ G+I
Sbjct: 431 RIILLDEPTSALDKSIQKSVLELLLNLQEKQDLSYLFISHDLDVIKAFCDRVLVVSEGKI 490
Query: 243 VEMGPAKEVIDNPLHPYTRALL 264
VE G +EV DNP H YT+ LL
Sbjct: 491 VETGAIEEVFDNPKHAYTKRLL 512
Score = 140 bits (349), Expect = 2e-32
Identities = 82/237 (34%), Positives = 136/237 (56%), Gaps = 10/237 (4%)
Query: 44 YKQQVFALVGESGCGKTTTGKLVVKL---LEPTDGKIYLEGQDVTQLRTKEEIKAYRRR- 99
Y ++V A+VGESG GK++ LV++L +P +G+I E ++ L+ E + R
Sbjct: 26 YSERV-AIVGESGSGKSSIANLVMRLNPRFKPHNGEILFETTNL--LKESEAFMQHLRGN 82
Query: 100 -VQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVG 158
+ I QDP SS+NP +I + E +H ++ +E + A++ V++ E+++
Sbjct: 83 IIAYIAQDPLSSLNPLHKIGKQMSEAYFLHHKNASQVLLKEQVLNAMKQVQL--DEKFLD 140
Query: 159 RFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYL 218
R+P+ LSGGQRQRV IA +I P ++ DEP + LD I+ +IL+L+K+L + + L
Sbjct: 141 RYPYELSGGQRQRVCIAMGIINAPKLLICDEPTTALDAQIQNQILDLLKQLSVEKNIALL 200
Query: 219 YITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERK 275
+I+HDL + AD + V+ G IVE KE+ ++P H Y++ L+ A P K
Sbjct: 201 FISHDLKAVKRLADRVYVLKKGEIVETNLTKELFNDPKHEYSKLLIQASNLPAKNLK 257
>gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 362
Score = 166 bits (415), Expect = 5e-40
Identities = 99/309 (32%), Positives = 169/309 (54%), Gaps = 17/309 (5%)
Query: 31 QFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPT----DGKIYLEGQDVTQ 86
+ ++AV+ +SF V K ++ ++GESG GKTT +++ + P GK+ G D+
Sbjct: 61 RIIKAVNDVSFGVEKGEILGIIGESGSGKTTLISAILRAIRPPGKIISGKVIFNGMDIFS 120
Query: 87 LRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALE 146
+ E K + + + Q +++NP I ++ + HG A+++ +I +A E
Sbjct: 121 MTIDEFRKLLWKDISYVPQASQNALNPVLPISEIFYHEAISHG----EADKKRVIERASE 176
Query: 147 MVKIT--PPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILE 204
++K+ P + +P LSGG +QRV IA +L+LNP I+ DEP S LD+ + +L+
Sbjct: 177 LLKLVGLDPARVLKMYPFQLSGGMKQRVMIALSLLLNPKLILMDEPTSALDMLNQELLLK 236
Query: 205 LMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALL 264
L+K + ++MGVT +Y+THD+ A+ + VMY G ++E G +E+I +PL+PYT L+
Sbjct: 237 LIKNINQEMGVTIVYVTHDILNIAQIANRLLVMYKGYVMEEGKTEEIIKSPLNPYTSLLV 296
Query: 265 AAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHN 324
++ IP K +K + + + P V+ GC F RC G C + P+ I ++
Sbjct: 297 SS----IPSLKGEVKVINVPLDEP-LVSKEKGCPFLARCSK-AFGRCKEELPE-IRLVYD 349
Query: 325 HWVECHRVG 333
V CH G
Sbjct: 350 RKVRCHLYG 358
>gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . (dppD-2)
[Sulfolobus solfataricus]
Length = 323
Score = 162 bits (406), Expect = 5e-39
Identities = 98/306 (32%), Positives = 166/306 (54%), Gaps = 12/306 (3%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPT---DGKIYLEGQDVTQLRT 89
+RA++ + F++ K ++GE+G GKTT +++ L G I+ +D+ ++
Sbjct: 19 IRAINRVYFQLEKGDSLGVIGETGSGKTTIANAIMRALPENAEYSGSIFFNNKDILKMDQ 78
Query: 90 KEEIKAYR-RRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMV 148
+ K R +++ +I Q ++ NP R+ + L + ++ + ++ E I+ +
Sbjct: 79 ETYRKEIRWKKISIIPQYSMNAFNPIKRVGEQLVKIMMENDSNIDTSKASERIFYLFNQL 138
Query: 149 KITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKE 208
+ PPE Y + P LSGGQRQRV IA AL+L+P ++ADEP + LDV +A ++ L+K
Sbjct: 139 SL-PPEIYK-KLPDELSGGQRQRVVIASALLLDPELVIADEPTTALDVINQARVISLIKR 196
Query: 209 LKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVP 268
T +YITHD++ A + +Y G I+E G ++++ PLHPY++ LL++VP
Sbjct: 197 EIVDKQKTLIYITHDIAVVAGVAKKVLTLYAGEIMEFGDSRKIFKEPLHPYSKGLLSSVP 256
Query: 269 EPIPERKDVIKELP-IKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWV 327
+ R +K++ I G+ P GC F PRC K +C ++PKL Y +V
Sbjct: 257 D---IRFGKVKKVHYIPGDPPDLSKEIKGCPFAPRC-SIAKDICKVEKPKL-RYVDGRYV 311
Query: 328 ECHRVG 333
CH VG
Sbjct: 312 ACHLVG 317
>dbj|BAA15988.1| (D90849) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 370
Score = 160 bits (401), Expect = 2e-38
Identities = 101/280 (36%), Positives = 152/280 (54%), Gaps = 21/280 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAV-DGISFEVYKQQVFALVGESGCGK 59
M + +L +ENL F QQ VR V + +S ++ + ALVGESG GK
Sbjct: 1 MTQTLLAIENLSVGF------------RHQQTVRTVVNDVSLQIEAGETLALVGESGSGK 48
Query: 60 TTTGKLVVKLL-----EPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPR 114
+ T +++LL E G I G+ + + ++ MIFQ+P S+NP
Sbjct: 49 SVTALSILRLLPSPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPL 108
Query: 115 FRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAI 174
+ L E L +H A R E++ L+ V I + + +PH LSGG+RQRV I
Sbjct: 109 HTLEKQLYEVLSLHRGMRREAARGEIL-NCLDRVGIRQAAKRLTDYPHQLSGGERQRVMI 167
Query: 175 ARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWI 234
A AL+ P ++ADEP + LDVS++A+IL+L++EL+ ++ + L+ITH+LS R A +
Sbjct: 168 AMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRV 227
Query: 235 AVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVP--EPIP 272
AVM GR VE A + +P HPYT+ LL + P +P+P
Sbjct: 228 AVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVP 267
>gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport protein D [Thermotoga
maritima]
Length = 277
Score = 159 bits (397), Expect = 6e-38
Identities = 95/275 (34%), Positives = 156/275 (56%), Gaps = 20/275 (7%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E ++ +NLK Y+ + L G ++ V+AVD +S ++ +++ + GESGCGK+T
Sbjct: 2 ETLISGKNLKAYYVL------DLWGS-KKVVKAVDNVSLDILPNEIYGIAGESGCGKSTL 54
Query: 63 GKLVVKLLEPT----DGKIY--LEGQ--DVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPR 114
K ++ LL+P DG++ +EG+ +VT L+++ K + I Q +NP
Sbjct: 55 LKALLALLDPPLRLMDGELLYNIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPV 114
Query: 115 FRIYDVLEEPLLIHGIGETRAEREELIYKALEMVK-ITPPEEYVGRFPHMLSGGQRQRVA 173
R+ D E L H + + +E + A++ +K + PE + FPH LSGG RQRV
Sbjct: 115 KRVRDTFIEILSSH----VKKQTKEFLDLAVQHLKDLGLPERVLNMFPHQLSGGMRQRVT 170
Query: 174 IARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADW 233
IA A +L P I ADEP + LDV + +++L+++++ + T + +THD+
Sbjct: 171 IALATVLKPRVIFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTR 230
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVP 268
+A+MY G+IVE GP E+ NPLHPYTR L+ ++P
Sbjct: 231 MAIMYAGKIVEEGPTLEIFKNPLHPYTRYLIQSLP 265
>emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi]
Length = 330
Score = 158 bits (396), Expect = 8e-38
Identities = 105/313 (33%), Positives = 162/313 (51%), Gaps = 17/313 (5%)
Query: 29 PQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP----TDGKIYLEGQDV 84
P V+AVD +S + + ++ LVGESG GK+ K + + + T + + D+
Sbjct: 16 PDGPVKAVDRVSINLNEGEIRGLVGESGSGKSLIAKAICGINKENWRITADRFRFDDVDM 75
Query: 85 TQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPL---LIHGIGETRAE-REEL 140
QL + K R + MIFQ+P S ++P R+ L + + G R R+
Sbjct: 76 LQLTPPQRRKLVRHNMSMIFQEPQSCLDPSARVGRQLIQSIPGWTYKGRWWQRFNWRKRR 135
Query: 141 IYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRA 200
+ L V I ++ + FP+ L+ G+ Q+V IA AL P ++ADEP + ++ + +A
Sbjct: 136 AIELLHRVGIKDHKDVMRSFPYELTEGECQKVMIAIALANQPRLLIADEPNNAMEATTQA 195
Query: 201 EILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYT 260
+I L+ L + T L I+HDL T +AD I V+Y G+ VE + E+I P HPYT
Sbjct: 196 QIFRLLSRLNQNNNTTILLISHDLQTMSKWADRINVLYCGQTVESAVSDELISAPHHPYT 255
Query: 261 RALLAAVPE---PIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPK 317
+AL+ A+P+ +P K + LP G +PS ++P GCR PRC Y +K C T P
Sbjct: 256 QALIRAMPDFGCSLP-HKSRLNTLP--GAIPSLAHLPVGCRLGPRCPYSQK-QCMTAPPL 311
Query: 318 LIEYSHNHWVECH 330
+ NHW CH
Sbjct: 312 I--PVRNHWYACH 322
>pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656199|gb|AAF94833.1| (AE004246) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 158 bits (395), Expect = 1e-37
Identities = 100/314 (31%), Positives = 163/314 (51%), Gaps = 22/314 (7%)
Query: 29 PQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP----TDGKIYLEGQDV 84
PQ V+AVD +S + + ++ LVGESG GK+ K +V + + T ++ L D+
Sbjct: 16 PQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENWRVTADRMRLGNIDL 75
Query: 85 TQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIG----ETRAEREEL 140
QL +E + R V MIFQ+P + ++P + L E + E R++
Sbjct: 76 LQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRTFEGRWWERFTWRKKQ 135
Query: 141 IYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRA 200
L V I ++ + +P+ L+ G+ Q+V IA A+ P ++ADEP + +D ++
Sbjct: 136 AIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPKLLIADEPTNDVDPITQS 195
Query: 201 EILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYT 260
+IL L+ + + + L I HDL+T +AD I VMY G+ VE +++ P HPYT
Sbjct: 196 QILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQSVESAETAKIVAEPKHPYT 255
Query: 261 RALLAAVP---EPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPK 317
ALL A+P + IP K ++ LP G +P ++P GCR PRC Y ++ +
Sbjct: 256 AALLKAMPDFSDWIP-HKQKLQSLP--GSIPPLQHLPIGCRLGPRCPYAQR--------Q 304
Query: 318 LIEYSHNHWVECHR 331
+E H+ WV+ H+
Sbjct: 305 CVEVPHSRWVKNHK 318
>dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus]
Length = 331
Score = 157 bits (393), Expect = 2e-37
Identities = 102/312 (32%), Positives = 158/312 (49%), Gaps = 15/312 (4%)
Query: 29 PQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP----TDGKIYLEGQDV 84
PQ V+AVD +S + + ++ LVGESG GK+ K +V + + T ++ L D+
Sbjct: 16 PQGLVKAVDRMSLTLNEGEIRGLVGESGSGKSLVAKAIVGVSKDNWRITADRMRLGNIDL 75
Query: 85 TQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIG----ETRAEREEL 140
QL KE + R + MIFQ+P + ++P + L E + E R++
Sbjct: 76 LQLTPKERRRVIARDIAMIFQEPSTCLDPSEEVGRQLIESIPSRAFEGKWWERFKWRKKQ 135
Query: 141 IYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRA 200
L V I + +G +P+ L+ G+ Q+V IA A+ P ++ADEP + LD ++
Sbjct: 136 AIALLHKVGIKDHKRLMGSYPYELTDGECQKVMIAMAIATKPKLLIADEPTNDLDPITQS 195
Query: 201 EILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYT 260
+IL L+ + + T L I HDL+T +A I VMY G+ VE ++I P HPYT
Sbjct: 196 QILRLLSRMNQLNNTTILLIGHDLATITQWAGRITVMYCGQSVESADTSKIIAAPKHPYT 255
Query: 261 RALLAAVPE--PIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKL 318
ALL A+P+ K ++ LP G +P ++P GCR PRC Y +K + +
Sbjct: 256 DALLKAMPDFNDWVPHKQKLQSLP--GSIPPLQHLPIGCRLGPRCPYAQKQCVEIPHTRR 313
Query: 319 IEYSHNHWVECH 330
I+ NH CH
Sbjct: 314 IK---NHKFNCH 322
>gb|AAF73561.1| (AE002315) peptide ABC transporter, ATP-binding protein [Chlamydia
muridarum]
Length = 281
Score = 154 bits (386), Expect = 1e-36
Identities = 93/276 (33%), Positives = 151/276 (54%), Gaps = 24/276 (8%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M++ +LK+ENL + +++ Q R V+ +S + ++Q ALVGE+G GKT
Sbjct: 1 MSKTLLKIENL----------VVAIKESNQ---RLVNHLSLTIKQRQSLALVGENGSGKT 47
Query: 61 TTGKLVVKLLEPT----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFR 116
T K ++ L GKI+ G D+T+L KE +++ IFQ+ ++ P R
Sbjct: 48 TVSKAILGFLPDNCCIQSGKIFYSGTDITRLSRKEFQSIRGKKISTIFQNAMGTLTPSMR 107
Query: 117 IYDVLEEPLLIHGIGETRAEREELIYKALEM---VKITPPEEYVGRFPHMLSGGQRQRVA 173
+ + E L H + +EE KA E+ V I P+ + +P LSGG QRV+
Sbjct: 108 VGTQIIETLRHHFV----MSKEEAFAKARELLVSVHIESPDRCLQLYPFELSGGMCQRVS 163
Query: 174 IARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADW 233
IA AL NP I+ADEP + LD +A++L ++K++ + L ITH+L+ +
Sbjct: 164 IAIALATNPELIIADEPSTALDSISQAQVLRVLKQIHQNNNTALLLITHNLALVSELCEE 223
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE 269
+A+++ G IVE GP E++ +P HPYT+ L+ A+P+
Sbjct: 224 MAIIHHGEIVEQGPVHELLRSPSHPYTQKLIRAIPK 259
>sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|628820|pir||S39588 peptide transport system
ATP-binding protein sapD - Salmonella typhimurium
>gi|414211|emb|CAA52287.1| (X74212) sapD [Salmonella
typhimurium]
Length = 330
Score = 153 bits (384), Expect = 2e-36
Identities = 105/341 (30%), Positives = 171/341 (49%), Gaps = 34/341 (9%)
Query: 4 PILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTTG 63
P+L + NL F G+ V+AVD +S + + ++ LVGESG GK+
Sbjct: 2 PLLDIRNLTIEFKTSEGW-----------VKAVDRVSMTLSEGEIRGLVGESGSGKSLIA 50
Query: 64 KLVVKLLEP----TDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYD 119
K + + + T ++ + D+ +L ++E K V MIFQ+P S ++P R+
Sbjct: 51 KAICGVAKDNWRVTADRMRFDDIDLLRLSSRERRKLVGHNVSMIFQEPQSCLDPSERVGR 110
Query: 120 VLEEPLLI--------HGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQR 171
L + + +G + EL+++ V I +E + FP+ L+ G+ Q+
Sbjct: 111 QLMQNIPAWTYKGRWWQRLGWRKRRAIELLHR----VGIKDHKEPMRSFPYELTDGECQK 166
Query: 172 VAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFA 231
V IA AL P ++ADEP + ++ + +A+I L+ L + T L I+HDL +A
Sbjct: 167 VMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWA 226
Query: 232 DWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE--PIPERKDVIKELPIKGEVPS 289
D I V+Y G+ VE P+K+++ P HPYT+AL+ A+P+ K + LP G +P
Sbjct: 227 DKINVLYCGQTVETAPSKDLVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLP--GAIPL 284
Query: 290 AVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
+P GCR PRC Y ++ T P+L + NH CH
Sbjct: 285 LEQLPIGCRLGPRCPYAQRECIIT--PRLTG-AKNHLYACH 322
>sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|7445933|pir||F64877 peptide transport system
ATP-binding protein sapD - Escherichia coli
>gi|1279403|emb|CAA65940.1| (X97282) SapD protein
[Escherichia coli] >gi|1742104|dbj|BAA14844.1| (D90766)
Peptide transport system ATP-binding protein SapD
(fragment). [Escherichia coli]
>gi|1742113|dbj|BAA14852.1| (D90767) Peptide transport
system ATP-binding protein SapD (fragment). [Escherichia
coli] >gi|1742122|dbj|BAA14861.1| (D90768) Peptide
transport system ATP-binding protein SapD (fragment).
[Escherichia coli] >gi|1787548|gb|AAC74373.1| (AE000227)
putative ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 330
Score = 150 bits (376), Expect = 2e-35
Identities = 100/310 (32%), Positives = 161/310 (51%), Gaps = 15/310 (4%)
Query: 31 QFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP----TDGKIYLEGQDVTQ 86
++V+AVD +S + + ++ LVGESG GK+ K + + + T ++ + D+ +
Sbjct: 18 EWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLR 77
Query: 87 LRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPL---LIHGIGETR-AEREELIY 142
L +E K V MIFQ+P S ++P R+ L + + G R R+
Sbjct: 78 LSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAI 137
Query: 143 KALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEI 202
+ L V I ++ + FP+ L+ G+ Q+V IA AL P ++ADEP + ++ + +A+I
Sbjct: 138 ELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQI 197
Query: 203 LELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRA 262
L+ L + T L I+HDL +AD I V+Y G+ VE P+KE++ P HPYT+A
Sbjct: 198 FRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQA 257
Query: 263 LLAAVPE--PIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIE 320
L+ A+P+ K + LP G +P +P GCR PRC Y ++ T P+L
Sbjct: 258 LIRAIPDFGSAMPHKSRLNTLP--GAIPLLEQLPIGCRLGPRCPYAQRECIVT--PRLTG 313
Query: 321 YSHNHWVECH 330
+ NH CH
Sbjct: 314 -AKNHLYACH 322
>gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae]
Length = 330
Score = 149 bits (373), Expect = 4e-35
Identities = 100/310 (32%), Positives = 160/310 (51%), Gaps = 15/310 (4%)
Query: 31 QFVRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP----TDGKIYLEGQDVTQ 86
++V+AVD +S + + ++ LVGESG GK+ K + + + T ++ + D+
Sbjct: 18 EWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLG 77
Query: 87 LRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPL---LIHGIGETR-AEREELIY 142
L +E K V MIFQ+P S ++P R+ L + + G R R+
Sbjct: 78 LSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFVWRKRRAI 137
Query: 143 KALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEI 202
+ L V I ++ + FP+ L+ G+ Q+V IA AL P ++ADEP + ++ + +A+I
Sbjct: 138 ELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQI 197
Query: 203 LELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRA 262
L+ L + T L I+HDL +AD I V+Y G+ VE P+KE++ P HPYT+A
Sbjct: 198 FRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQA 257
Query: 263 LLAAVPE--PIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIE 320
L+ A+P+ K + LP G +P +P GCR PRC Y ++ T P+L
Sbjct: 258 LIRAIPDFGSAMPHKSRLNTLP--GAIPLLEQLPIGCRLGPRCPYAQRECIVT--PRLTG 313
Query: 321 YSHNHWVECH 330
+ NH CH
Sbjct: 314 -AKNHLYACH 322
>gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 331
Score = 147 bits (367), Expect = 2e-34
Identities = 91/308 (29%), Positives = 163/308 (52%), Gaps = 14/308 (4%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPT----DGKIYLEGQ-DVTQL 87
++ + +S ++ + ++ + GESG GK+T ++ + P G I ++ + D+ +
Sbjct: 22 IKVLRNVSIDIPESKIIGVAGESGSGKSTLATTIMGFVNPPLYVERGSIIVDSKYDILSM 81
Query: 88 RTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEM 147
E K + + Q +S+NP ++ + + L G+ +++Y LE
Sbjct: 82 SRDELNKIRGSVISYVPQAAQNSLNPIRKVKETFTDILKAKGMDYYA--NIDVVYNTLEE 139
Query: 148 VKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMK 207
V +T + + +P LSGG +QRV IA +L+LNP ++ DEP + LDV ++ EIL+L+K
Sbjct: 140 VGLTD-RQVLDMYPFQLSGGMKQRVVIAISLLLNPKILIMDEPTTGLDVVVQYEILKLLK 198
Query: 208 ELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
+++++ +T + I+HD++ +D+IAVMY G+IVE G +++ HPYT LL++V
Sbjct: 199 KIQKEKDLTLVVISHDIAMLFQISDYIAVMYGGQIVEYGKYNTLLEEAYHPYTYLLLSSV 258
Query: 268 PEPIPERKDVIKELP-IKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHW 326
P + K+LP I G+ + P GC F RC F C P+++ Y +
Sbjct: 259 PTV----RSRGKKLPRIPGDFEGFIRYPKGCVFSSRCP-FVTSTCKEVPPQIVAYDKFGF 313
Query: 327 VECHRVGE 334
+C R E
Sbjct: 314 YKCIRYPE 321
>pir||E71545 probable oligopeptide transport ATPase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328607|gb|AAC67793.1|
(AE001293) Oligopeptide Transport ATPase [Chlamydia
trachomatis]
Length = 277
Score = 145 bits (361), Expect = 1e-33
Identities = 91/276 (32%), Positives = 146/276 (51%), Gaps = 24/276 (8%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+E +LK++NL + S++ Q R V+ +S + + Q ALVGE+G GKT
Sbjct: 1 MSEDLLKIDNL----------VVSVKDSNQ---RLVNHLSLTIKRCQSMALVGENGSGKT 47
Query: 61 TTGKLVVKLLEPT----DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFR 116
T K V+ L G+I D+T+L ++ +++ IFQ+ ++ P R
Sbjct: 48 TVSKAVLGFLPDNCYIQSGRILYSSTDITRLSRRQLQTIRGKKIATIFQNAMGTLTPSMR 107
Query: 117 IYDVLEEPLLIHGIGETRAEREELIYKA---LEMVKITPPEEYVGRFPHMLSGGQRQRVA 173
+ + E L H +EE KA LE V I P+ + +P LSGG QRV+
Sbjct: 108 VGAQIVETLRHH----FDMSKEEAFSKARELLESVHIESPDRCLQLYPFELSGGMCQRVS 163
Query: 174 IARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADW 233
IA AL NP I+ADEP + LD +A++L ++ ++ + L ITH+L+ +
Sbjct: 164 IAIALATNPELIIADEPSTALDSISQAQVLRVLTQIHQNHSTALLLITHNLALVSELCEE 223
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPE 269
+A++ G IVE GP +E++ +P HPYT+ L+ A+P+
Sbjct: 224 MAIIRYGEIVEQGPVQELLHSPSHPYTQQLIRAIPK 259
>emb|CAC00366.1| (AL160371) probable oligopeptide transport ATP-binding protein appf
[Leishmania major]
Length = 242
Score = 145 bits (361), Expect = 1e-33
Identities = 83/200 (41%), Positives = 119/200 (59%), Gaps = 15/200 (7%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A+P++ +L K+FP++ G + G VRAVDG+SF+V K + +VGESGCGK+T
Sbjct: 12 AQPLVIARDLVKHFPLKGG----IPGRRAGAVRAVDGVSFDVLKGETLGVVGESGCGKST 67
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
T +L+++L G++ + + V + +K YR +VQM+FQD +SS+NPR I + +
Sbjct: 68 TARLLMQLTAQDSGELIFDAEXVGSAQLP--LKRYRSQVQMVFQDSYSSLNPRLTIEESI 125
Query: 122 EEPLLIHGIGETRA---EREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
+HGI A R L LE P + GR+PH LSGGQRQRV IARAL
Sbjct: 126 AFTARVHGIPAREAIDRARHLLGRVGLE------PLRFGGRYPHELSGGQRQRVNIARAL 179
Query: 179 ILNPTFIVADEPVSMLDVSI 198
+L P ++ DE VS LD S+
Sbjct: 180 VLRPRLVILDEAVSALDKSV 199
>sp|P16678|PHNK_ECOLI PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN PHNK
>gi|96281|pir||C35719 phnK protein - Escherichia coli
>gi|147206|gb|AAA24349.1| (J05260) HisP-like nucleotide
binding protein (phnK) [Escherichia coli]
>gi|216600|dbj|BAA14271.1| (D90227) ATP-binding protein
[Escherichia coli]
Length = 252
Score = 139 bits (347), Expect = 4e-32
Identities = 86/270 (31%), Positives = 139/270 (50%), Gaps = 24/270 (8%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M +P+L V NL + +GF +SF+++ +V +VGESG GKT
Sbjct: 1 MNQPLLSVNNLTHLYAPGKGF---------------SDVSFDLWPGEVLGIVGESGSGKT 45
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T K + L P G+I+ E + + + + + R ++ Q P + +
Sbjct: 46 TLLKSISARLTPQQGEIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGN 105
Query: 121 LEEPLLIHGI---GETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
+ E L+ G G+ RA + K LE V+I P + P SGG +QR+ IAR
Sbjct: 106 IGERLMATGARHYGDIRATAQ----KWLEEVEI--PANRIDDLPTTFSGGMQQRLQIARN 159
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L+ +P + DEP LDVS++A +L+L++ L ++ + + +THDL AR AD + VM
Sbjct: 160 LVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVM 219
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
G++VE G V+D+P HPYT+ L+++V
Sbjct: 220 KQGQVVESGLTDRVLDDPHHPYTQLLVSSV 249
>pir||S56325 hisP protein-like nucleotide-binding protein phnK - Escherichia
coli >gi|536941|gb|AAA96996.1| (U14003) HisP-like
nucleotide binding protein (ATP-binding protein)
[Escherichia coli] >gi|1790535|gb|AAC77058.1| (AE000482)
ATP-binding component of phosphonate transport
[Escherichia coli K12]
Length = 252
Score = 139 bits (347), Expect = 4e-32
Identities = 86/270 (31%), Positives = 139/270 (50%), Gaps = 24/270 (8%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M +P+L V NL + +GF +SF+++ +V +VGESG GKT
Sbjct: 1 MNQPLLSVNNLTHLYAPGKGF---------------SDVSFDLWPGEVLGIVGESGSGKT 45
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T K + L P G+I+ E + + + + + R ++ Q P + +
Sbjct: 46 TQLKSISARLTPQQGEIHYENRSLYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGN 105
Query: 121 LEEPLLIHGI---GETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
+ E L+ G G+ RA + K LE V+I P + P SGG +QR+ IAR
Sbjct: 106 IGERLMATGARHYGDIRATAQ----KWLEEVEI--PANRIDDLPTTFSGGMQQRLQIARN 159
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
L+ +P + DEP LDVS++A +L+L++ L ++ + + +THDL AR AD + VM
Sbjct: 160 LVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVM 219
Query: 238 YLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
G++VE G V+D+P HPYT+ L+++V
Sbjct: 220 KQGQVVESGLTDRVLDDPHHPYTQLLVSSV 249
>pir||C81179 spermidine/putrescine ABC transporter, ATP-binding protein NMB0610
[imported] - Neisseria meningitidis (group B strain
MD58) >gi|7225840|gb|AAF41037.1| (AE002416)
spermidine/putrescine ABC transporter, ATP-binding
protein [Neisseria meningitidis MC58]
Length = 419
Score = 137 bits (342), Expect = 2e-31
Identities = 86/260 (33%), Positives = 142/260 (54%), Gaps = 30/260 (11%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A+P LK++ L K F G+ AVD I ++Y+ ++FAL+G SG GK+T
Sbjct: 54 AKPYLKIQGLVKKF-----------GDNY----AVDNIDLDIYQHEIFALLGSSGSGKST 98
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
+++ + P GKI L+GQD+T+L Y R + M+FQ ++ P +
Sbjct: 99 LLRMLAGMESPNQGKIILDGQDITKLAP------YDRPINMMFQS--YALFPHMTV---- 146
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
E + G+ + + + E+ + EM+++ ++ R PH LSGGQ+QR+A+AR+L
Sbjct: 147 -EQNIAFGLKQDKMPKGEIAARVEEMLRLVQMTKFAKRKPHQLSGGQQQRIALARSLAKR 205
Query: 182 PTFIVADEPVSMLDVSIRAEI-LELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P ++ DEP+ LD +R + LEL+ L E++GVT + +THD A A IA+M G
Sbjct: 206 PKILLLDEPLGALDKKLRQQTQLELVNTL-EQVGVTCIMVTHDQEEAMTMATRIAIMSDG 264
Query: 241 RIVEMGPAKEVIDNPLHPYT 260
++ ++G +V D P +T
Sbjct: 265 QLQQVGTPSDVYDYPNSRFT 284
>sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|1075118|pir||D64134 peptide transport system
ATP-binding protein HI1641 - Haemophilus influenzae
(strain Rd KW20) >gi|1574489|gb|AAC23288.1| (U32837)
peptide ABC transporter, ATP-binding protein (sapD)
[Haemophilus influenzae Rd]
Length = 349
Score = 132 bits (328), Expect = 7e-30
Identities = 81/310 (26%), Positives = 154/310 (49%), Gaps = 19/310 (6%)
Query: 33 VRAVDGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEP----TDGKIYLEGQDVTQLR 88
++ VDG++ + + ++ LVGESG GK+ K++ ++ T + ++ +L
Sbjct: 20 IKIVDGVNLSLNEGEISGLVGESGSGKSLIAKVICNAIKENWIITADRFRFHDVELLKLS 79
Query: 89 TKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVLEEPL--------LIHGIGETRAEREEL 140
+ K + + MIFQ+P S ++P +I L + + G + EL
Sbjct: 80 PNKRRKLVGKEISMIFQNPLSCLDPSRKIGKQLIQNIPNWTFKNKWWKWFGWKKRRAIEL 139
Query: 141 IYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRA 200
+++ V I + + +P+ L+ G+ Q+V IA A+ P ++ADEP + L+ +
Sbjct: 140 LHR----VGIKDHRDIMASYPNELTEGEGQKVMIAMAVANQPRLLIADEPTNALESTTAL 195
Query: 201 EILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYT 260
++ L+ + + G T L ++D+ + + D I+V+Y G+ E P + +I++P HPYT
Sbjct: 196 QVFRLLSSMNQNQGTTILLTSNDIKSISEWCDQISVLYCGQNTESAPTEILIESPHHPYT 255
Query: 261 RALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIE 320
+AL+ AVP+ K ++G P +P GCR PRC + +K + +P+ ++
Sbjct: 256 QALINAVPDFTQPLGFKTKLGTLEGTAPILEQMPIGCRLGPRCPFAQKKCME--KPRRLK 313
Query: 321 YSHNHWVECH 330
H CH
Sbjct: 314 IK-QHEFSCH 322
>pir||D83194 polyamine transport protein PotA PA3607 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949764|gb|AAG06995.1|AE004781_3 (AE004781)
polyamine transport protein PotA [Pseudomonas
aeruginosa]
Length = 363
Score = 127 bits (315), Expect = 2e-28
Identities = 81/255 (31%), Positives = 136/255 (52%), Gaps = 28/255 (10%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M P+L++ N+ + F G+ AVD +S + + F L+G SGCGKT
Sbjct: 1 MTPPLLEIRNVTRRF-----------GD----FTAVDNVSLTINTGEFFTLLGPSGCGKT 45
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T +++ +P G+I L GQD+ + + +R V +FQ ++ P +
Sbjct: 46 TLLRMLAGFDQPDSGEIRLNGQDLAGVEPE------KRPVHTVFQS--YALFPHMSVAQN 97
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ PL + G+ ++E + + +AL+ V++ + GR P LSGGQRQRVAIARAL+
Sbjct: 98 IAFPLKMAGVA--KSEIDARVEQALKDVRLA---DKGGRMPTQLSGGQRQRVAIARALVN 152
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P ++ DEP+S LD +R E+ + L++ +G+T++Y+THD A + IAVM G
Sbjct: 153 RPRLLLLDEPLSALDAKLREEMQIELINLQKDVGITFVYVTHDQGEALALSHRIAVMNQG 212
Query: 241 RIVEMGPAKEVIDNP 255
R+ ++ + + P
Sbjct: 213 RVEQLDAPETIYSFP 227
>pir||C75369 amino acid ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459415|gb|AAF11206.1|AE002008_1 (AE002008) amino
acid ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 265
Score = 124 bits (309), Expect = 1e-27
Identities = 88/269 (32%), Positives = 141/269 (51%), Gaps = 29/269 (10%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+ EPI+ +N++K+F G +LRG ++ V + +V ++G SG GK+
Sbjct: 21 VGEPIIVAQNVQKHF----GTFHALRG-----------VNLTVRQGEVVVIIGPSGSGKS 65
Query: 61 TTGKLVVKLLEPTDG-KIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYD 119
T + + L+P DG I ++G L+ + A RR V M+FQ ++ P + D
Sbjct: 66 TFIR-TINALDPHDGGSITVDG---LPLQGARNLDAIRREVGMVFQS--FNLFPHLTVLD 119
Query: 120 -VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
+ P + G+ + +A+ + L++++ EE +FP LSGGQ+QRVAIARAL
Sbjct: 120 NITLAPTRVRGVDKAQAQA-----RGLDLLRRVGIEEQAYKFPAQLSGGQQQRVAIARAL 174
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
+ P ++ DEP S LD + E+L++MKEL + G+T L +TH++ AR AD I
Sbjct: 175 AMEPKIMLFDEPTSALDPEMIKEVLDVMKEL-ARTGMTMLVVTHEMGFAREVADRILFFD 233
Query: 239 LGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
G IVE + NP H R L+ +
Sbjct: 234 QGNIVEDTTPEAFYQNPQHERARQFLSKI 262
>gb|AAA26354.1| (M96263) phnK [Sinorhizobium meliloti]
Length = 258
Score = 122 bits (302), Expect = 8e-27
Identities = 84/275 (30%), Positives = 134/275 (48%), Gaps = 31/275 (11%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A P+LKV ++ K++ R G +SFE+Y +V A+VGESG GKTT
Sbjct: 3 AVPLLKVSDVSKFYGSRIG---------------CRNVSFELYPGEVLAIVGESGSGKTT 47
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQM------IFQDPFSSMNPRF 115
+ L PT G + +D Q R + RR M + Q+P +
Sbjct: 48 LLSCLSTRLMPTSGIVEYHMRD-GQYRDLARMSEAERRFLMRTDWGFVHQNPADGLRMTV 106
Query: 116 RIYDVLEEPLLIHG---IGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRV 172
+ E L+ G G RA + + + + E+ + P SGG RQR+
Sbjct: 107 SAGANVGERLMAVGDRHYGNIRAAAGDWLRR------VEIEEDRIDDQPRAFSGGMRQRL 160
Query: 173 AIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFAD 232
IAR L+ +P + DEP LDVS++A +L+L++ L +G+ + +THDL+ AR +
Sbjct: 161 QIARNLVTSPRLVFMDEPTGGLDVSVQARLLDLVRGLVHDLGLAAVIVTHDLAVARLLSH 220
Query: 233 WIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAV 267
+ VM G ++E G V+D+P PYT+ L++++
Sbjct: 221 RMMVMKDGAVIEQGLTDRVLDDPREPYTQLLVSSI 255
>dbj|BAB04188.1| (AP001508) phosphonates transport system [Bacillus halodurans]
Length = 247
Score = 120 bits (297), Expect = 3e-26
Identities = 81/258 (31%), Positives = 138/258 (53%), Gaps = 24/258 (9%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M E IL+VE LKK +P + I+ + + ++ +++G SG GK+
Sbjct: 1 MGEMILRVEGLKKVYP--------------DGTVGIKEINTSIRRGELISVIGPSGAGKS 46
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T + + +L+EPT G I++EG+++ R K+ ++ RR++ M+FQ ++ + + +V
Sbjct: 47 TFLRSINRLVEPTSGAIFVEGENICNARGKK-LRQMRRKIGMVFQH-YNLIKRSSVLQNV 104
Query: 121 LEEPL-----LIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIA 175
L L + G+G E +AL ++K EE + LSGGQ+QRV IA
Sbjct: 105 LHGRLGYMSTIKGGLGRFH---ESDTKRALSILKRVGLEEQALKRADELSGGQQQRVGIA 161
Query: 176 RALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIA 235
RA+ NPT I+ADEP++ LD + +L MK + ++ G+T + H + A+ FAD +
Sbjct: 162 RAIAQNPTLILADEPIASLDPTASENVLHYMKTICQEEGITTVVNLHQVEFAKKFADRMI 221
Query: 236 VMYLGRIVEMGPAKEVID 253
+ G+IV G +E+ D
Sbjct: 222 GIKAGKIVFDGTPRELTD 239
>pir||D75308 sugar ABC transportor, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459951|gb|AAF11701.1|AE002049_6 (AE002049) sugar
ABC transportor, ATP-binding protein [Deinococcus
radiodurans]
Length = 455
Score = 118 bits (292), Expect = 1e-25
Identities = 78/266 (29%), Positives = 134/266 (50%), Gaps = 29/266 (10%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
MAE IL E++ KY+ G Q AV + E+ ++ VG SGCGK+
Sbjct: 36 MAEVIL--EHVNKYY-----------GNKQH---AVKDFNLEIADREFMVFVGPSGCGKS 79
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TT +++ L + +DG + + + V + K+ R + M+FQ+ ++ P +Y+
Sbjct: 80 TTLRMIAGLEDISDGVLRIGDRVVNDVPPKD------RDIAMVFQN--YALYPHMNVYEN 131
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ G+ + REE+ + + +I E +GR P LSGGQRQRVA+ RA++
Sbjct: 132 MA-----FGLKLRKTPREEIDKRVRDAARILQIEHLLGRKPKELSGGQRQRVAMGRAIVR 186
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P+ + DEP+S LD +R E+ + +L ++G T +Y+THD A + I VM G
Sbjct: 187 EPSVFLMDEPLSNLDAKLRVEMRSQISQLHRRLGATIIYVTHDQVEAMTLGNRIVVMRDG 246
Query: 241 RIVEMGPAKEVIDNPLHPYTRALLAA 266
I+++ + D P + + + +
Sbjct: 247 VIMQVDTPMNLYDFPQNRFVAGFIGS 272
>pir||E83001 probable ATP-binding component of ABC transporter PA5152 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9951453|gb|AAG08537.1|AE004928_3 (AE004928) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 257
Score = 109 bits (271), Expect = 3e-23
Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 33/264 (12%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A P L++ NL K R G L L+G IS V +++G SG GK+T
Sbjct: 4 ATPALEIRNLHK----RYGDLEVLKG-----------ISLTARDGDVISILGSSGSGKST 48
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTK---------EEIKAYRRRVQMIFQDPFSSMN 112
+ + L P G+I + G+++ ++K ++I R + +FQ+ ++
Sbjct: 49 FLRCINLLENPHQGQILVSGEELRLKKSKNGDLVAADSQQINRLRSELGFVFQN--FNLW 106
Query: 113 PRFRIYD-VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQR 171
P I D V+E P + +G+++AE E+ L V I +P LSGGQ+QR
Sbjct: 107 PHMSILDNVIEAPRRV--LGKSKAEAIEIAEGLLAKVGIADKRH---SYPAQLSGGQQQR 161
Query: 172 VAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFA 231
AIAR L + P I+ DEP S LD + E+L +++ L E+ G T L +TH++S AR +
Sbjct: 162 AAIARTLAMQPKVILFDEPTSALDPEMVQEVLNVIRALAEE-GRTMLLVTHEMSFARQVS 220
Query: 232 DWIAVMYLGRIVEMGPAKEVIDNP 255
+ ++ G + E G ++V +NP
Sbjct: 221 SEVVFLHQGLVEEQGTPQQVFENP 244
>pir||T34822 ABC-transporter ATP binding protein - Streptomyces coelicolor
>gi|2815356|emb|CAA16479.1| (AL021530) ABC-transporter
ATP binding protein [Streptomyces coelicolor A3(2)]
Length = 230
Score = 108 bits (268), Expect = 8e-23
Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 19/244 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+ E +++VE+++K + G V A+ G+SF+V + ++ AL G SG GKT
Sbjct: 5 VTETMVRVEDVRKSY-----------GRDSAAVHALRGVSFDVPRGELIALKGRSGSGKT 53
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T +V L P G++ ++G+D+ +L + R RV +FQ + P +
Sbjct: 54 TLLNIVGGLDTPDAGRVEVDGRDLAELDEDGLLALRRDRVGFVFQS--FGLIPILTAAEN 111
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ P+ + EREE + L +V + ++ + P +SGGQ+QRVAIARAL
Sbjct: 112 VGVPMRLRRAAAR--EREERVELLLSLVGLA---DHAAQRPGEMSGGQQQRVAIARALAN 166
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
NP ++ADEP LD ++EL++ + VT L THD +T AD + + G
Sbjct: 167 NPALLIADEPTGQLDAETGHSVMELLRAVVRSEQVTALVATHD-ATLLDLADRVLELRDG 225
Query: 241 RIVE 244
IVE
Sbjct: 226 EIVE 229
>pir||F72485 probable high-affinity branched-chain amino acid transport
ATP-binding protein APE2526 - Aeropyrum pernix (strain
K1) >gi|5106231|dbj|BAA81542.1| (AP000064) 240aa long
hypothetical high-affinity branched-chain amino acid
transport ATP-binding protein [Aeropyrum pernix]
Length = 240
Score = 108 bits (266), Expect = 1e-22
Identities = 81/256 (31%), Positives = 129/256 (49%), Gaps = 27/256 (10%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
MAEP+L+V+++ Y+ GE Q A+ G+S VYK ++ AL+G +G GKT
Sbjct: 2 MAEPLLEVKSIDVYY-----------GEFQ----ALFGVSLRVYKGEIVALLGGNGAGKT 46
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFS-SMNPRFRIYD 119
TT + LL+P +G I +G+D+T L A++R + I P + PR +Y+
Sbjct: 47 TTLLTISGLLKPRNGSIIWQGRDITGL------PAFKRVEEGISHVPEGRGIFPRLTVYE 100
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
L E + E +Y ++K + LSGG++Q +AIARALI
Sbjct: 101 NLRVAASTRRAKEHFQDSLEQVYTIFPILKARRSQ-----LAGTLSGGEQQMLAIARALI 155
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYL 239
P ++ DEP L + +++ L L+E++GVT L + ++ + AD VM
Sbjct: 156 QRPILLMMDEPSLGLAPKLARDVIYLASRLREELGVTILLVEQNVGLSLKVADRGYVMET 215
Query: 240 GRIVEMGPAKEVIDNP 255
GRIV G + E+ +P
Sbjct: 216 GRIVLEGASDELALDP 231
>gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 138
Score = 101 bits (249), Expect = 1e-20
Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 193 MLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVI 252
M+D S+R I+ L +L++++GV+ +YITHDL+TA Y +D IA+M+ G IVEMG + V+
Sbjct: 1 MVDASLRMSIVNLFAQLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGDIVEMGSVERVL 60
Query: 253 DNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNIPPGCRFHPRCVYFKKGLCD 312
+P HPYTR L ++PEP PE+K KE + + GC+F RC +
Sbjct: 61 TDPKHPYTRLLRESIPEPDPEKK--WKEEITIADTEYEEYLRKGCKFAGRCPEVMSICRE 118
Query: 313 TKEPKLIEYSHNHWVECH 330
K P+++ + V CH
Sbjct: 119 EKPPEIM--VGDSMVRCH 134
>sp|P57031|LOLD_NEIMB LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|11277321|pir||C81107 ABC transporter, ATP-binding
protein NMB1234 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7226473|gb|AAF41615.1|
(AE002471) ABC transporter, ATP-binding protein
[Neisseria meningitidis MC58]
Length = 231
Score = 100 bits (247), Expect = 2e-20
Identities = 72/230 (31%), Positives = 115/230 (49%), Gaps = 18/230 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+E ILK E + K + R G L VR + G+ E++ + ++G SG GK+
Sbjct: 1 MSELILKCEGVGKRY--RDGGLD---------VRVLHGLDLEIHAGESTGIIGSSGSGKS 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T ++ L P++G++ L G+D+ L + R + ++Q F + P F +
Sbjct: 50 TLLHILGGLDMPSEGRVLLMGEDLRTLNQRRLGDLRNRHLGFVYQ--FHHLLPEFSALEN 107
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ PLLI + REE A+ M++ + LSGG+RQR AIARAL+
Sbjct: 108 VMMPLLIG-----KKSREEAAEAAMAMLEKVGLKHRSTHRAGELSGGERQRAAIARALVT 162
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYF 230
P ++ADEP LD + +L++M ELK ++G + +THD A F
Sbjct: 163 QPKCLLADEPTGNLDRANARNVLDMMLELKTELGTGLVVVTHDDELAGRF 212
>pir||S75010 ABC-type transport protein sll1001 - Synechocystis sp. (strain PCC
6803) >gi|1652125|dbj|BAA17050.1| (D90902) ABC
transporter [Synechocystis sp.]
Length = 260
Score = 98.7 bits (242), Expect = 9e-20
Identities = 77/267 (28%), Positives = 131/267 (48%), Gaps = 35/267 (13%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M EP++++ + K F R+ +D + ++Y + ++G SG GK+
Sbjct: 1 MTEPLIQLRGISKSFGDRQ---------------ILDSVDLDLYPGEALVVIGPSGTGKS 45
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T +++ LL P G++ ++ Q R E R R+ ++FQ S++ + +
Sbjct: 46 TILRIIAGLLPPDSGEVLIKTQ---PRRGLVEDDNERIRIALVFQQ--SALFDSLTVAEN 100
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ LL H RE++ K L +V +T E+Y +P LSGG R+RV+ ARA++
Sbjct: 101 VGFFLLEHSSLSREVIREQVADK-LALVGLTGIEDY---YPAQLSGGMRKRVSFARAIMS 156
Query: 181 -------NPTFIVADEPVSMLDVSIRAEILELMKELKEKMG--VTYLYITHDLSTARYFA 231
NP I+ DEP + LD I +L++ L++ G TY+ ++H ST R A
Sbjct: 157 NPHQPEDNPEVILYDEPTAGLDPIASTVIEDLVRRLQKSPGGCGTYIMVSHQESTIRRTA 216
Query: 232 DWIAVMYLGRIVEMGPAKEV--IDNPL 256
D + ++Y G+I GP + DNPL
Sbjct: 217 DRVVLLYDGKIQWQGPVSAIDQTDNPL 243
>emb|CAC11370.1| (AL445063) gliding motility protein related [Thermoplasma
acidophilum]
Length = 305
Score = 98.3 bits (241), Expect = 1e-19
Identities = 70/254 (27%), Positives = 132/254 (51%), Gaps = 34/254 (13%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M + +++VE+L++ + + + FV VD +SF V K +++ L+G++G GKT
Sbjct: 1 MPDKVIEVEHLRQTY------------DGRTFV--VDDVSFYVLKGEIYGLLGKNGAGKT 46
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQD---PFSSMNPRFRI 117
TT + + +L GK+ + G DV+ E + RRR+ ++ Q+ F+S+ ++
Sbjct: 47 TTIRTMTTILPVHYGKVRILGMDVS-----ENAEKIRRRIGVVLQNESFDFASVERNLKV 101
Query: 118 YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
Y +L + + + + R E ++ ++ K+ E LSGGQ++R+ +AR
Sbjct: 102 YGMLWD--VPREVLKARIEEVLEVFDLGQLRKVRAME---------LSGGQKKRLQVARE 150
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
+ + + DEP LD +R +L +++ K + G+T LY T + A Y D IA+M
Sbjct: 151 FLHDMDLLFLDEPTVGLDPIMRRSVLNYIRD-KARKGLTVLYTTQIMEEADYLCDRIAIM 209
Query: 238 YLGRIVEMGPAKEV 251
G+IV G + ++
Sbjct: 210 NRGKIVAEGTSSDL 223
>gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . carboxy-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 103
Score = 97.9 bits (240), Expect = 1e-19
Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 234 IAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAVNI 293
I VMYLG++VE+G +EVI PLHPYT+ALL AVP P P+ IKE IKGE+ S + +
Sbjct: 8 IGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIG--IKEPNIKGEIQSPLEL 65
Query: 294 PPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
P GC F+ RC F K +C K P++ +H+V CH
Sbjct: 66 PKGCVFYSRCP-FAKDICKEKPPEIKRIKGDHYVACH 101
>pir||B70327 ABC transporter - Aquifex aeolicus >gi|2982983|gb|AAC06596.1|
(AE000682) ABC transporter [Aquifex aeolicus]
Length = 224
Score = 96.7 bits (237), Expect = 3e-19
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 26/228 (11%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
MAE IL+ EN+KK + RG+ + GIS V K + +++G SG GK+
Sbjct: 1 MAE-ILRAENIKK---VIRGY------------EILKGISLSVKKGEFVSIIGASGSGKS 44
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T ++ L PT+GK++LEG++V KE R++ +FQ F + P +
Sbjct: 45 TLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQ--FHYLIPELTALEN 102
Query: 121 LEEPLLIHGIGETRA-EREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+ P+L G + A ER E + L + + + R P+ LSGG++QRVAIARAL
Sbjct: 103 VIVPMLKMGKPKKEAKERGEYLLSELGL------GDKLSRKPYELSGGEQQRVAIARALA 156
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTA 227
P + ADEP LD + ++++ ++ E G + + +TH+ A
Sbjct: 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA 203
>pir||S76632 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001739|dbj|BAA10576.1| (D64004) ABC transporter
[Synechocystis sp.]
Length = 245
Score = 96.3 bits (236), Expect = 4e-19
Identities = 71/224 (31%), Positives = 115/224 (50%), Gaps = 22/224 (9%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
AEP++ +ENL ++ G + + I+ + + +V L G SG GKTT
Sbjct: 18 AEPVVAMENLSHFY-----------GTGNLRKQILFDINLRLDEGEVVILKGPSGSGKTT 66
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQ--DPFSSMNPRFRIYD 119
L+ L G + + GQ++ + K+++ RR + IFQ + S+ R +
Sbjct: 67 LLTLMGGLRSAQSGSLRVFGQELNGAK-KQDLVQVRRHIGYIFQAHNLLESLTARQNVQM 125
Query: 120 VLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALI 179
+E +H + + +EL LE V + ++ PH LSGGQ+QRVAIARAL+
Sbjct: 126 AIE----LHPQYNAQ-QAKELSIAMLEAVGLGA---HINYNPHNLSGGQKQRVAIARALV 177
Query: 180 LNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHD 223
+P I+ADEP + LD +++ELM++L + G T L +THD
Sbjct: 178 SHPKMILADEPTAALDSKSGHDVVELMRKLAREQGSTILIVTHD 221
>sp|P57030|LOLD_NEIMA LIPOPROTEIN RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
>gi|11346330|pir||C81909 probable ABC-transporter
ATP-binding protein NMA1402 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380061|emb|CAB84642.1| (AL162755) putative
ABC-transporter ATP-binding protein [Neisseria
meningitidis Z2491]
Length = 231
Score = 96.3 bits (236), Expect = 4e-19
Identities = 71/230 (30%), Positives = 113/230 (48%), Gaps = 18/230 (7%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+E ILK E + K + R G L L + G+ E+ + ++G SG GK+
Sbjct: 1 MSELILKCEGVGKRY--RDGGLDVL---------VLHGLDLEIRAGESTGIIGSSGSGKS 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T ++ L P++G++ L G+D+ L + R + ++Q F + P F +
Sbjct: 50 TLLHILGGLDMPSEGRVLLMGEDLRTLNQRRLGDLRNRHLGFVYQ--FHHLLPEFSALEN 107
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ PLLI + REE A+ M++ + LSGG+RQR AIARAL+
Sbjct: 108 VMMPLLIG-----KKSREEAAEAAMAMLEKVGLKHRSTHRAGELSGGERQRAAIARALVT 162
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYF 230
P ++ADEP LD + +L++M ELK ++G + +THD A F
Sbjct: 163 QPKCLLADEPTGNLDRANARNVLDMMLELKTELGTGLVVVTHDDELAGRF 212
>gb|AAG34709.1|AF320001_2 (AF320001) putative ATP binding protein of ABC transporter
[Acinetobacter sp. BD413]
Length = 228
Score = 95.2 bits (233), Expect = 1e-18
Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 23/231 (9%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M++ +L+ +++ K+F + + V + G+S ++ + ++VG SG GK+
Sbjct: 1 MSKIVLEAKDVYKHFT-----------DGKSTVEVIKGLSLKIAAGEFVSIVGASGSGKS 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T ++ L +PT G+++L Q L E + ++R + F F + P F +
Sbjct: 50 TLLHILGGLDQPTQGQVFLNEQRFDNLGEAE--RGFKRNQYLGFVYQFHHLLPEFSALEN 107
Query: 121 LEEPLLIHG---IGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
+ PL++ E + + E L+ + ++T P LSGG+RQRVA+ARA
Sbjct: 108 VAMPLMLRADTNYKEVKQQAEHLLDRVGLSHRLTHK-------PGELSGGERQRVALARA 160
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTAR 228
L+ P ++ADEP LD I EL+ +LK++ + L +THD A+
Sbjct: 161 LVARPAVMLADEPTGNLDRKTAFGIFELLSDLKQEFNMAMLIVTHDEQLAQ 211
>sp|P21629|BRAF_PSEAE HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING
PROTEIN BRAF >gi|77619|pir||D36125 branched-chain amino
acid transport protein braF - Pseudomonas aeruginosa
(strain PAO) >gi|11347526|pir||E83509 branched-chain
amino acid transport protein BraF PA1071 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|216866|dbj|BAA14257.1| (D90223) BraF (peripheral
membrane protein, ATP-binding protein) [Pseudomonas
aeruginosa] >gi|9946987|gb|AAG04460.1|AE004539_2
(AE004539) branched-chain amino acid transport protein
BraF [Pseudomonas aeruginosa]
Length = 255
Score = 94.4 bits (231), Expect = 2e-18
Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 32/266 (12%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+ PIL+V L F G LA V+G++ +V ++QV +++G +G GKT
Sbjct: 1 MSRPILEVSGLTMRFG---GLLA------------VNGVNLKVEEKQVVSMIGPNGAGKT 45
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDP--FSSMNPRFRIY 118
T + +PT G I L+G+++ L K R+ V FQ+ F M +
Sbjct: 46 TVFNCLTGFYQPTGGLIRLDGEEIQGLPGH---KIARKGVVRTFQNVRLFKEMTAVENLL 102
Query: 119 DVLEEPL---LIHGIGET----RAEREELIYKA--LEMVKITPPEEYVGRFPHMLSGGQR 169
L + G+ +T R+ERE + Y A LE V +T E+ R L+ GQ+
Sbjct: 103 VAQHRHLNTNFLAGLFKTPAFRRSEREAMEYAAHWLEEVNLT---EFANRSAGTLAYGQQ 159
Query: 170 QRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARY 229
+R+ IAR ++ P ++ DEP + L+ ++ L+ +L+ + VT L I HD+
Sbjct: 160 RRLEIARCMMTRPRILMLDEPAAGLNPKETDDLKALIAKLRSEHNVTVLLIEHDMKLVMS 219
Query: 230 FADWIAVMYLGRIVEMGPAKEVIDNP 255
+D I V+ G + G +++ DNP
Sbjct: 220 ISDHIVVINQGAPLADGTPEQIRDNP 245
>pir||E83288 probable ATP-binding component of ABC transporter PA2857 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948945|gb|AAG06245.1|AE004712_5 (AE004712) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 227
Score = 94.0 bits (230), Expect = 2e-18
Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 32/229 (13%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+ IL +NL K G L L +S ++ + A+VG SG GK+
Sbjct: 1 MSASILNAQNLSKVVGSAEGKLTILHD-----------LSLDLARGDSLAIVGSSGSGKS 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T L+ L +P+ G++ L G + L + + V +FQ F++ D
Sbjct: 50 TLLGLLAGLDQPSGGEVRLAGHALGDLDEDQRARVRAAHVGFVFQS--------FQLLDS 101
Query: 121 LEE------PLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAI 174
L+ PL + G + R EL LE V + + +G +P LSGG++QRVAI
Sbjct: 102 LDALENVMLPLELEGRADARQRAREL----LERVGLG---QRLGHYPRQLSGGEQQRVAI 154
Query: 175 ARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHD 223
ARA P + ADEP LD + I +L+ EL + G T + +THD
Sbjct: 155 ARAFAAEPDVLFADEPTGNLDSATGERISDLLFELNRERGTTLVLVTHD 203
>gi|11498986 branched-chain amino acid ABC transporter, ATP-binding protein
(braF-4) {Methanococcus jannasch [Archaeoglobus
fulgidus] >gi|7445945|pir||E69423 branched-chain amino
acid ABC transporter, ATP-binding protein (braF-4)
homolog - Archaeoglobus fulgidus
>gi|2649182|gb|AAB89855.1| (AE001008) branched-chain
amino acid ABC transporter, ATP-binding protein (braF-4)
{Methanococcus jannasch [Archaeoglobus fulgidus]
Length = 274
Score = 93.6 bits (229), Expect = 3e-18
Identities = 68/261 (26%), Positives = 126/261 (48%), Gaps = 26/261 (9%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+A IL+ +NL K+F ++A++ ++ V K + ++G +G GKT
Sbjct: 16 VAMKILQTQNLSKFF---------------DGLKALNRVNIGVEKGSITLVIGPNGSGKT 60
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T V +GK++ EG+D+T K + R + FQ P + + ++
Sbjct: 61 TFINTVSGFYRADEGKVFFEGKDITN---KPPHEISRLGIVRTFQIP-QPLKKMTVLENL 116
Query: 121 LEEP-----LLIHGI-GETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAI 174
L P + H + G E EE++ KA +++ + LSGGQ + + +
Sbjct: 117 LIAPEGYGERIFHSVSGRWLKEEEEIVEKAFRILEFLKLDHLWDSEAQNLSGGQLKLLEV 176
Query: 175 ARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWI 234
ARA++ + ++ DEP++ ++ + +LE ELK KMGV++L + H L + D I
Sbjct: 177 ARAMMKDAKLLIMDEPIAGVNPVLSHSMLERFVELK-KMGVSFLIVEHRLDIVLKYTDHI 235
Query: 235 AVMYLGRIVEMGPAKEVIDNP 255
VM G ++ G +++++NP
Sbjct: 236 YVMANGSVIAEGKEEDILNNP 256
>sp|P31219|YBBA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YBBA
>gi|7445737|pir||F64780 probable ABC-type transport
protein ybbA - Escherichia coli
>gi|1773177|gb|AAB40249.1| (U82664) hypothetical abc
transporter [Escherichia coli]
>gi|1786703|gb|AAC73597.1| (AE000155) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 228
Score = 93.2 bits (228), Expect = 4e-18
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 18/226 (7%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
AE I++V +LKK G+ + + + G+ V + + ALVGESG GK+T
Sbjct: 3 AENIVEVHHLKKSV-----------GQGEHELSILTGVELVVKRGETIALVGESGSGKST 51
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
++ L + + G++ L GQ + + + K + V +FQ + P + +
Sbjct: 52 LLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQS--FMLIPTLNALENV 109
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
E P L+ G E+ AE LE + + +++ P LSGG++QRVA+ARA
Sbjct: 110 ELPALLRG--ESSAESRNGAKALLEQLGLGKRLDHL---PAQLSGGEQQRVALARAFNGR 164
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTA 227
P + ADEP LD +I +L+ L + G T + +THDL A
Sbjct: 165 PDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLA 210
>pir||C71307 probable ABC transporter, ATP-binding protein - syphilis spirochete
>gi|3322874|gb|AAC65555.1| (AE001233) ABC transporter,
ATP-binding protein [Treponema pallidum]
Length = 226
Score = 93.2 bits (228), Expect = 4e-18
Identities = 71/225 (31%), Positives = 111/225 (48%), Gaps = 22/225 (9%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M +PIL VE + K F + ++ + +SF V + A+ GESGCGK+
Sbjct: 1 MNDPILSVEQVSKSFCCAT-----------ERIQILSDVSFSVPRAVKVAITGESGCGKS 49
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRR-VQMIFQDPFSSMNPRFRIYD 119
T ++ + G + + DV L + + YRR+ + ++FQ + R +
Sbjct: 50 TLLNIIGGMEHADSGIVRVLSCDVLTLH-EHALTEYRRQFLGLVFQ-----FHHLLRDFT 103
Query: 120 VLEEPLLIHGI-GETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
LE +L I G++ E Y+ LE V++ + FP +SGG+RQR A+ARAL
Sbjct: 104 ALENVMLPGLIAGKSYREVRARAYELLEKVRVVQRAHH---FPAQMSGGERQRTAVARAL 160
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHD 223
I +PT I+ADEP LD + +L+ L E+ T L +THD
Sbjct: 161 INDPTLILADEPTGNLDPKNALIVQDLLFSLTEEYQKTLLIVTHD 205
>pir||D81263 probable ABC transport system ATP-binding protein Cj1663 [imported]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6969079|emb|CAB73650.1| (AL139079) putative ABC
transport system ATP-binding protein [Campylobacter
jejuni]
Length = 217
Score = 93.2 bits (228), Expect = 4e-18
Identities = 69/242 (28%), Positives = 127/242 (51%), Gaps = 31/242 (12%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M + ++K+ NL K F G+ V+A++ I+ VY+ + A++G SG GK+
Sbjct: 2 MKKELIKINNLNKEF-----------GK----VKALNNINLSVYEGEWLAIMGPSGSGKS 46
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T ++ + P+ G+ L+ +++ Q+ +++I R ++ ++FQ +F +
Sbjct: 47 TLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQ--------QFHLIPY 98
Query: 121 LE--EPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
L E +++ + + E+ LE V ++ + P LSGG++QRV IARAL
Sbjct: 99 LNALENVMLSQYYHSSVDEEDA-KMVLEKVGLS---HRLTHLPSQLSGGEQQRVCIARAL 154
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
I NP ++ADEP LD + +L+ +++LK + G T + ITH+ A+ FAD ++
Sbjct: 155 INNPELLLADEPTGNLDEANEQIVLQTLQKLKNE-GKTIVLITHNPDLAK-FADRTLILQ 212
Query: 239 LG 240
G
Sbjct: 213 HG 214
>emb|CAB88835.1| (AL353832) putative ABC-transport protein, ATP-binding component.
[Streptomyces coelicolor A3(2)]
Length = 354
Score = 92.4 bits (226), Expect = 7e-18
Identities = 72/259 (27%), Positives = 126/259 (47%), Gaps = 41/259 (15%)
Query: 2 AEPILKVENLKKYFPIRR--GFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGK 59
A+ ++++ ++K F +RR GFL R + VRAVDG+SF V + ++ +G +G GK
Sbjct: 34 ADAFIELDGVEKVFDVRRKTGFLKRERRQ----VRAVDGLSFTVSRGEMVGYIGPNGAGK 89
Query: 60 TTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQ------------DP 107
+TT K++ +L P+ G++ + G D ++ R + R+ ++F D
Sbjct: 90 STTIKMLTGILTPSGGRLRVAGIDPSRERIR-----LAHRIGVVFGQRTTLWWDLPLIDS 144
Query: 108 FSSMNPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGG 167
+ M+ +RI D A E + + +E++++ +E + LS G
Sbjct: 145 YRLMHRMYRIPD---------------ARYRENLDRCVELLQL---QELLDVPVRQLSLG 186
Query: 168 QRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTA 227
QR R IA AL+ +P + DEP LDV +A++ + +L + G T L THDL
Sbjct: 187 QRMRGDIAAALLHDPEVLYLDEPTIGLDVVSKAKVRGFLLDLNAERGTTVLLTTHDLQDI 246
Query: 228 RYFADWIAVMYLGRIVEMG 246
+ V+ GR++ G
Sbjct: 247 EQLCSRVMVIDHGRLMYDG 265
>pir||E72314 ribose ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4981493|gb|AAD36035.1|AE001758_13
(AE001758) ribose ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 523
Score = 90.1 bits (220), Expect = 3e-17
Identities = 76/252 (30%), Positives = 127/252 (50%), Gaps = 30/252 (11%)
Query: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
E +L+ N+ K FP V AV+ ++ ++YK +V ALVGE+G GK+T
Sbjct: 10 EVLLEARNITKTFP---------------GVIAVNNVTLQIYKGEVCALVGENGAGKSTL 54
Query: 63 GKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQ--DPFSSMNPRFRIYDV 120
K++ + +G+I+LEG++V R + +A + +I Q D +++ I+ +
Sbjct: 55 MKILAGVYPDYEGQIFLEGKEV---RFRNPREAQENGIALIPQELDLVPNLSSAENIF-L 110
Query: 121 LEEPLLIHGIGETRA--EREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARAL 178
EP+ G+ E + E+ ++ L V I P + LS Q+Q VAIA+AL
Sbjct: 111 SREPVNEFGVIEYQKMFEQASKLFSKLG-VNIDPKTKV-----EDLSTSQQQMVAIAKAL 164
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
L+ I+ DEP S + ++ +++ LK + G + +YI+H L AD + VM
Sbjct: 165 SLDAKIIIMDEPTSAIGKRETEQLFNIIRSLKNE-GKSVIYISHRLEEIFEIADRVVVMR 223
Query: 239 LGRIVEMGPAKE 250
GR V GP +E
Sbjct: 224 DGRKVGEGPIEE 235
Score = 69.1 bits (166), Expect = 7e-11
Identities = 71/287 (24%), Positives = 131/287 (44%), Gaps = 49/287 (17%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+ + I +VE +K + R+ L VD +SF V K +V + G G G+T
Sbjct: 261 ITDEIFRVEGIKLWSLDRKKLL-------------VDDVSFYVRKGEVLGIYGLVGAGRT 307
Query: 61 TTGKLVVKLLEP--------TDGKIYLEGQDVTQLRTKEEIK-------AYRRRVQMIFQ 105
+LLE T+GK+++ G+++ ++ +K R+ +I Q
Sbjct: 308 -------ELLEAIFGAHPGRTEGKVFIGGKEIKIHSPRDAVKNGIGLVPEDRKTAGLILQ 360
Query: 106 DPFSSMNPRFRIYDVLEEPLLIHGIGETRAERE-ELIYKALEMVKITPPEEYVGRFPHML 164
S+ + V+ + L++ G ++ E E++ +E + I P Y + L
Sbjct: 361 ---MSVLHNITLPSVVMK-LIVRKFGLIDSQLEKEIVRSFIEKLNIKTPSPY--QIVENL 414
Query: 165 SGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDL 224
SGG +Q+V +A+ L + P ++ DEP +DV+ ++EI +L+ E+ G+ + ++ +L
Sbjct: 415 SGGNQQKVVLAKWLAIKPKVLLLDEPTRGIDVNAKSEIYKLISEMAVS-GMGVVMVSSEL 473
Query: 225 STARYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPI 271
+D I VM GR +EV + L L AA+P +
Sbjct: 474 PEILAMSDRILVMSEGRKTAEFLREEVTEEDL------LKAAIPRSV 514
>emb|CAB95741.1| (AJ276960) putative ABC transporter [Staphylococcus xylosus]
Length = 257
Score = 89.7 bits (219), Expect = 4e-17
Identities = 62/237 (26%), Positives = 116/237 (48%), Gaps = 23/237 (9%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+ P+ +++N+ YF ++ ++ I+ ++ + + A+VG +G GK+
Sbjct: 1 MSTPVFELKNIDYYFDNKQ---------------VLENINIKINRGEFVAIVGPNGAGKS 45
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T K+++ LL G+IY++G+D ++ +I ++ Q F+ F + I +
Sbjct: 46 TLLKIILGLLPIQKGRIYVDGKDYNGNQSLLKISYVSQKAQA-FKAGFPASVKEVVISGL 104
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
+ L E + + L + E + + LSGGQ+QRV IARALI
Sbjct: 105 TKRKKLFQWFNRNDEESVKTVLSRLNI------EHLIDKNIAELSGGQQQRVLIARALIS 158
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
P+ ++ DEP S +D +E E ++ LK++ GVT + +THD+ A +A +
Sbjct: 159 EPSVLILDEPTSGIDAKHVSEFYETLETLKQE-GVTIILVTHDIGVVADTATEVACL 214
>emb|CAB76006.1| (AL157916) putative ABC transporter, ATP-binding subunit
[Streptomyces coelicolor A3(2)]
Length = 312
Score = 88.9 bits (217), Expect = 7e-17
Identities = 81/279 (29%), Positives = 133/279 (47%), Gaps = 45/279 (16%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A P+++V +L+K S G P VDG+SF V + ++F ++G +G GKTT
Sbjct: 12 AMPVIEVTDLRK----------SYGGRP-----VVDGVSFAVEEGEIFGVLGPNGAGKTT 56
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMI-FQDPFSSMNPRFRIYDV 120
T + V L P G++ + G D + +RR +++ Q S + P+ + +
Sbjct: 57 TVECVEGLRVPDAGRVRVTGLD--------PVADHRRVAEVLGAQLQQSELQPKLTVREA 108
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
LE ++ + + + L++V + RF LSGGQ+QR+ IA AL+
Sbjct: 109 LE----LYAAFYPKPADWRPLAERLDLVPMLDT-----RFA-KLSGGQKQRLFIALALVG 158
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
+P +V DE + LD R E +L+++++ GVT L +TH + A+ D IAV+ G
Sbjct: 159 DPRVVVLDELTTGLDPRARRETWQLIEDIRAG-GVTVLLVTHFMEEAQRLCDRIAVIDRG 217
Query: 241 RIVEMGP----------AKEVIDNPLHPYTRALLAAVPE 269
RI + A + P P A L A+PE
Sbjct: 218 RIAALDTPAGLIRRSTGATVISFTPSAPLDEADLRALPE 256
>pir||G72290 branched chain amino acid ABC transporter, ATP-binding protein -
Thermotoga maritima (strain MSB8)
>gi|4981686|gb|AAD36215.1|AE001771_8 (AE001771) branched
chain amino acid ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 239
Score = 85.4 bits (208), Expect = 8e-16
Identities = 69/258 (26%), Positives = 125/258 (47%), Gaps = 30/258 (11%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M++ +L+V++L Y+ + A+ GI +V + Q+ L+G +G GKT
Sbjct: 1 MSDIVLEVQSLHVYYGA---------------IHAIKGIDLKVPRGQIVTLIGANGAGKT 45
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TT + L+ GKI GQD+T K R + ++ + + P +Y+
Sbjct: 46 TTLSAIAGLVRAQKGKIIFNGQDIT---NKPAHVINRMGIALVPEG--RRIFPELTVYEN 100
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPP--EEYVGRFPHMLSGGQRQRVAIARAL 178
L +G + +E I + LE + P +E + + LSGG++Q +AI RAL
Sbjct: 101 LM-------MGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 153
Query: 179 ILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMY 238
+ P ++ DEP L + +E+ E+++++ ++ G T L + + A A + V+
Sbjct: 154 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLE 212
Query: 239 LGRIVEMGPAKEVIDNPL 256
G+IV G A E++DN +
Sbjct: 213 TGQIVLEGKASELLDNEM 230
>emb|CAC05746.1| (AL391751) putative peptide transport system ATP-binding protein
(fragment) [Streptomyces coelicolor]
Length = 142
Score = 85.4 bits (208), Expect = 8e-16
Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 9/108 (8%)
Query: 228 RYFADWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEP--IPERKDVIKELPIKG 285
R+F+ +AVMYLG+IVE+ + + P HPYT ALL+AVPE E+++ I+ ++G
Sbjct: 3 RHFSQRVAVMYLGKIVEIADRDSLYNRPRHPYTHALLSAVPETDLDAEKRERIR---LEG 59
Query: 286 EVPSAVNIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHN---HWVECH 330
+VPS ++ P GCRF RC + + C T+EP L++ S N H CH
Sbjct: 60 DVPSPISPPSGCRFRTRC-WKAQDKCATEEPPLVQLSGNREGHLTACH 106
>gb|AAD44229.1|AF143772_35 (AF143772) DrrA [Mycobacterium avium]
Length = 315
Score = 81.5 bits (198), Expect = 1e-14
Identities = 72/251 (28%), Positives = 118/251 (46%), Gaps = 27/251 (10%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M+ P ++VE L K F LA G+ F V V L+G +G GKT
Sbjct: 1 MSAPAIEVEGLTKKFGGSTVALA--------------GVDFSVPAGTVCGLLGHNGAGKT 46
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
TT ++ L+ PT G+ + G DV +R E++A + M Q F+ ++P +
Sbjct: 47 TTINILSTLIRPTSGRASVAGHDV--VRRPAEVRA---SIGMAGQ--FTGLDPMLTGREN 99
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
L + G+ RA+ +A E+++ + R SGG +RV +A AL++
Sbjct: 100 LVLFSRLRGLNRRRAKA-----RADELLEQFNLVDAADRRLSTYSGGMFRRVDLASALVV 154
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P + DEP + LD R ++ L+ L+ + G+T L T L A +D I V+ G
Sbjct: 155 PPKVLFLDEPTTGLDPRSRRDVWALVSSLRVQ-GITVLLTTQYLEEADVLSDSIVVIDHG 213
Query: 241 RIVEMGPAKEV 251
R++ G ++E+
Sbjct: 214 RVIASGTSEEL 224
>sp|P30293|LIVG_SALTY HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING
PROTEIN LIVG (LIV-I PROTEIN G) >gi|79077|pir||JH0670
high-affinity branched-chain amino acid transport LIV-I
system LivF protein - Salmonella typhimurium
>gi|217074|dbj|BAA02131.1| (D12589) LivF protein
[Salmonella typhimurium]
Length = 255
Score = 78.0 bits (189), Expect = 1e-13
Identities = 67/269 (24%), Positives = 123/269 (44%), Gaps = 38/269 (14%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M++P+L V L F G LA V+ +S E+ ++++ +L+G +G GKT
Sbjct: 1 MSQPLLAVNGLMMRFG---GLLA------------VNNVSLELREREIVSLIGPNGAGKT 45
Query: 61 TTGKLVVKLLEPTDGKIYLE--------GQDVTQL---RTKEEIKAYRRRVQMIFQDPFS 109
T + +PT G I L GQ + ++ RT + ++ +R + ++
Sbjct: 46 TVFNCLTGFYKPTGGTITLRERHLEGLPGQQIARMGVVRTFQHVRLFREMT--VIENLLV 103
Query: 110 SMNPRFRIYDVLEEPLLIHGIGETRAERE---ELIYKALEMVKITPPEEYVGRFPHMLSG 166
+ + + + L G+ +T A R E + +A ++ E+ R L+
Sbjct: 104 AQHQQLKTG-------LFSGLLKTPAFRRAQSEALDRAATWLERIGLLEHANRQASNLAY 156
Query: 167 GQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLST 226
G ++R+ IAR ++ P ++ DEP + L+ E+ EL+ EL+ T L I HD+
Sbjct: 157 GDQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKL 216
Query: 227 ARYFADWIAVMYLGRIVEMGPAKEVIDNP 255
+D I V+ G + G +E+ +NP
Sbjct: 217 VMGISDRIYVVNQGTPLANGTPEEIRNNP 245
>pir||S75197 ABC-type transport protein slr2044 - Synechocystis sp. (strain PCC
6803) >gi|1652187|dbj|BAA17111.1| (D90903) ABC
transporter [Synechocystis sp.]
Length = 289
Score = 78.0 bits (189), Expect = 1e-13
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 34/233 (14%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
+++P++ VENL A P ++ I+ V ++ L+G +G GKT
Sbjct: 18 LSQPVIAVENL----------FAGYGATP-----VLENINLRVEERDFLGLIGPNGGGKT 62
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T K+++ L++P G + + G+ V Q RR V + Q R+ DV
Sbjct: 63 TLLKVLLGLIQPQQGTVQILGRSVEQ---------GRRYVGYVPQWLEFDRAFPVRVLDV 113
Query: 121 LEEPLLIHG--IGETRAEREELIYKALEMVKITPPEEYVGRFP-HMLSGGQRQRVAIARA 177
+ L G + E ++ + LE V + +G P LSGGQRQRV IARA
Sbjct: 114 VRMGRLGRGKLFRRYHQQDEAIVRRCLEQVGMGD----LGDRPLGTLSGGQRQRVYIARA 169
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDL-STARY 229
L P ++ DEP + +D ++ I EL+ EL + M T + I+HDL + +RY
Sbjct: 170 LASQPQILLLDEPTANVDSKVQRSIYELLGELNQTM--TIVMISHDLGAISRY 220
>gb|AAC67220.1| (U78968) ATPase protein DppD [Streptococcus pyogenes]
Length = 267
Score = 77.3 bits (187), Expect = 2e-13
Identities = 60/251 (23%), Positives = 109/251 (42%), Gaps = 24/251 (9%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M E +L +++L F FL + P + ++ EV K ++ A++G SG GK+
Sbjct: 1 MTETLLSIKDLSITFTQYGRFLKPFQSTP------IQALNLEVKKGELLAIIGASGSGKS 54
Query: 61 TTGKLVVKLLEPT---DGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
++ +L G + GQ +T R IK R + + + ++P ++
Sbjct: 55 LLAHAIMDILPKNAAVTGDMIYRGQSLTSKR----IKQLRGKEMTLIPQSVNYLDPSMKV 110
Query: 118 YDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARA 177
+ GI E +E +++ + E +P LSGG +RV
Sbjct: 111 KHQVRL-----GISENAKATQEGLFQQFGL-----KESDGDLYPFQLSGGMLRRVLFTTC 160
Query: 178 LILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVM 237
+ + I+ADEP L +L+ ++ +K G++ ++ITHD+ A AD I +
Sbjct: 161 VSDTVSLIIADEPTPGLHPDALQMVLDQLRSFADK-GISVIFITHDIVAASQIADRITIF 219
Query: 238 YLGRIVEMGPA 248
G+ +E PA
Sbjct: 220 KEGKAIETAPA 230
>pir||S74384 high-affinity branched-chain amino acid transport ATP-binding
protein braF - Synechocystis sp. (strain PCC 6803)
>gi|1001160|dbj|BAA10302.1| (D64001) high-affinity
branched-chain amino acid transport ATP-binding protein
[Synechocystis sp.]
Length = 267
Score = 74.1 bits (179), Expect = 2e-12
Identities = 73/271 (26%), Positives = 121/271 (43%), Gaps = 30/271 (11%)
Query: 1 MAEPILKVENL---KKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGC 57
M++ I ENL + + +G S G +RAVD V + + L+G +G
Sbjct: 1 MSDRITPAENLGSPESSLLLAQGLSKSFGG-----LRAVDHADIVVKEGSITGLIGPNGA 55
Query: 58 GKTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRI 117
GKTT L+ + P G++ G + QL + A R V+ F R+
Sbjct: 56 GKTTLFNLLSNFIRPDQGEVLFNGDSIGQLAPHQ--IALRGSVR-----TFQVAKVLSRL 108
Query: 118 YDVLEEPLLI--HGIGE---------TRAEREELI--YKALEMVKITPPEEYVGRFPHML 164
VLE LL H GE R ++EE KA+ M++ + L
Sbjct: 109 -TVLENMLLADQHQTGEKFLPRLINFRRVQKEERANREKAMAMLESVGLGAKAQDYAGAL 167
Query: 165 SGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDL 224
SGGQR+ + +ARAL+ NP I+ DEP + ++ ++ +I E + + G+T+L I H++
Sbjct: 168 SGGQRKLLEMARALMSNPKLILLDEPAAGVNPTLIGQICEHIVNW-NRQGITFLVIEHNM 226
Query: 225 STARYFADWIAVMYLGRIVEMGPAKEVIDNP 255
+ V+ GR + G +++ +P
Sbjct: 227 DVIMTLCHHVWVLAEGRNLADGTPEQIQSDP 257
>pir||T30218 ABC-transport protein - Streptomyces hygroscopicus
>gi|987092|emb|CAA60452.1| (X86780) ABC-transporter
[Streptomyces hygroscopicus]
Length = 235
Score = 72.6 bits (175), Expect = 6e-12
Identities = 69/248 (27%), Positives = 106/248 (41%), Gaps = 19/248 (7%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A P+L++ + + +R A L+ F R + ++G SG GKTT
Sbjct: 7 APPVLRLAGVSHTYSGQRRRTAVLKDIDYAFERGT-----------FYTILGPSGSGKTT 55
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
L L PT G I EGQD+T+L + YR + ++ + + +V
Sbjct: 56 LLSLASGLDTPTKGTITFEGQDLTELG----LGRYRNQHAATIFQQYNLLTYLTALQNVT 111
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
+ I G T R+ LE KI + R LSGGQ+QRVAIARAL +
Sbjct: 112 CA-MEITGTKPTTGSRKARALHLLE--KIGLDKAMATRNVLQLSGGQQQRVAIARALACD 168
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
+ ADEP LD A I+ +EL + + ++H A +D + + G+
Sbjct: 169 VDILFADEPTGNLDEDTAAGIIGTFRELAHEQDKCVVVVSHSQQLAAQ-SDRVLTLRKGK 227
Query: 242 IVEMGPAK 249
+ E A+
Sbjct: 228 LTEQVNAR 235
>pir||E69771 ABC transporter (ATP-binding protein) homolog ydbJ - Bacillus
subtilis >gi|1881259|dbj|BAA19286.1| (AB001488) PROBABLE
TRANSPORT ATP BINDING PROTEIN. [Bacillus subtilis]
>gi|2632749|emb|CAB12256.1| (Z99106) similar to ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 308
Score = 71.8 bits (173), Expect = 1e-11
Identities = 64/242 (26%), Positives = 105/242 (42%), Gaps = 30/242 (12%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
MAEPIL +E L K ++ + IS +V + ++ L+G +G GKT
Sbjct: 1 MAEPILHIEGLDKKIGSKQ---------------ILKQISMDVMEGEIIGLLGPNGSGKT 45
Query: 61 TTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDV 120
T +++V LL+ G + + G + E + V I + NP F Y
Sbjct: 46 TLIRIIVGLLKQNSGSVTISG-----FQHDTEFEKAMEAVGAIVE------NPEFYPYLT 94
Query: 121 LEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALIL 180
E L H + +E + + +E V +T + S G RQR+ IA+A++
Sbjct: 95 GWENLK-HFANMHKKIADERLDEVVERVGLTSA---IHDKVKTYSLGMRQRLGIAQAILH 150
Query: 181 NPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLG 240
P ++ DEP + LD + + + +KEL E G L+ TH L D + ++ G
Sbjct: 151 RPKLLILDEPTNGLDPAGMKDFRDHIKELAEMEGTAVLFATHLLREVEDLCDRVIIIQKG 210
Query: 241 RI 242
I
Sbjct: 211 EI 212
>pir||B83629 probable ATP-binding component of ABC transporter PA0136 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9945965|gb|AAG03526.1|AE004451_7 (AE004451) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 523
Score = 71.8 bits (173), Expect = 1e-11
Identities = 67/241 (27%), Positives = 109/241 (44%), Gaps = 26/241 (10%)
Query: 2 AEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTT 61
A P L++ + K +P G LA+ D I + ++ AL+GE+G GK+T
Sbjct: 8 APPRLELRGISKRYP---GCLAN------------DRIDLCIDAGEIHALLGENGAGKST 52
Query: 62 TGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPFSSMNPRFRIYDVL 121
K++ + P G+I +G+ V + ++ +A + M+FQ FS F V
Sbjct: 53 LMKIIYGVTRPDAGEIRWQGEPV---QVRDPARARALGIGMVFQH-FSL----FETLSVA 104
Query: 122 EEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQRVAIARALILN 181
E L G R E + + P E R H LS G+RQRV I R L+ +
Sbjct: 105 ENIALALGAEAGSPRRLEARIREVSQRYGMPLEPR--RLVHGLSIGERQRVEIVRCLMQD 162
Query: 182 PTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFADWIAVMYLGR 241
++ DEP S+L ++ ++ L E+ G + L+I+H L+ R V+ GR
Sbjct: 163 IRLLILDEPTSVLTPREAEDLFVTLRRLAEE-GCSVLFISHKLAEVRALCQRATVLRGGR 221
Query: 242 I 242
+
Sbjct: 222 V 222
>sp|Q55791|Y075_SYNY3 PROBABLE ATP-DEPENDENT TRANSPORTER SLR0075 >gi|7445597|pir||S76599
hypothetical protein - Synechocystis sp. (strain PCC
6803) >gi|1001706|dbj|BAA10543.1| (D64004) ABC
transporter subunit [Synechocystis sp.]
Length = 256
Score = 70.6 bits (170), Expect = 2e-11
Identities = 76/256 (29%), Positives = 122/256 (46%), Gaps = 34/256 (13%)
Query: 1 MAEPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKT 60
M++ IL ++NL AS+ G + + G++ E+ +V A++G +G GK+
Sbjct: 1 MSQTILSIKNLT----------ASVDGN-----QILKGVNLEIKAGEVHAIMGRNGSGKS 45
Query: 61 TTGKLVVKL--LEPTDGKIYLEGQDVTQLRTKEEIKAYRRRVQMIFQDPF-----SSMNP 113
T K++ E T G+I +GQD++ L E A + + FQ P S+++
Sbjct: 46 TLSKVITGHPDYEITGGEIIYQGQDLSALEPHERALA---GIFLAFQYPLEIPGVSNLDF 102
Query: 114 RFRIYDVLEEPLLIHGIGETRA-EREELIYKALEMVKITPPEEYVGR-FPHMLSGGQRQR 171
Y+ + L G+ E + E+LI + L++VK+ P ++ R SGG+++R
Sbjct: 103 LRIAYNAKRKHL---GLEELDTFDFEDLIQEKLDVVKMNPA--FLERSLNEGFSGGEKKR 157
Query: 172 VAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARY-F 230
I + IL PT + DE S LD+ + E + LK T L ITH Y
Sbjct: 158 NEILQMAILEPTLSILDEIDSGLDIDALRIVSEGVNFLKNPDNAT-LVITHYQRLLNYII 216
Query: 231 ADWIAVMYLGRIVEMG 246
D I VMY G+IV G
Sbjct: 217 PDHIHVMYDGKIVMSG 232
>pir||S74749 ABC-type transport protein slr0982 - Synechocystis sp. (strain PCC
6803) >gi|1651974|dbj|BAA16900.1| (D90901) ABC
transporter [Synechocystis sp.]
Length = 430
Score = 69.9 bits (168), Expect = 4e-11
Identities = 63/277 (22%), Positives = 118/277 (41%), Gaps = 49/277 (17%)
Query: 1 MAEPILKVENLKK-----------YFPIRRGFLASLRGEPQQFVR-------------AV 36
M++ +++VENL K Y +R R Q F R A+
Sbjct: 1 MSDTVIRVENLGKKYIIGHQRRERYTTLRDMMAEKARSFGQMFRRNGKEDYPTHEEFWAL 60
Query: 37 DGISFEVYKQQVFALVGESGCGKTTTGKLVVKLLEPTDGKIYLEGQDVTQLRTKEEIKAY 96
+SFE+ + ++G +G GK+T K++ ++ EPT+G+I ++G+ + L
Sbjct: 61 KDVSFEIKQGDRVGIIGRNGAGKSTLLKILSRITEPTEGRISIKGRVASLLEVGTGFHP- 119
Query: 97 RRRVQMIFQDPFSSMNPRFRIYDVLEEPLLIHGIGETRAEREELI-YKALEMVKITPPEE 155
+ R IY L +L G E + + +E++ + +E TP +
Sbjct: 120 -------------ELTGRENIY--LNGAILGMGKAEIKKKFDEIVAFAEVEKFLDTPVKR 164
Query: 156 YVGRFPHMLSGGQRQRVAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGV 215
Y S G R+A A A L P ++ DE +++ D + L M+++ EK G
Sbjct: 165 Y--------SSGMYVRLAFAVAAHLEPEILIVDEVLAVGDAQFQKRCLGKMEDVAEKEGR 216
Query: 216 TYLYITHDLSTARYFADWIAVMYLGRIVEMGPAKEVI 252
T ++++H + + ++ G +++ G VI
Sbjct: 217 TVIFVSHAMPMIASLCNSCFLLKHGEVIKEGSPGSVI 253
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128887576
Number of Sequences: 2977
Number of extensions: 5571867
Number of successful extensions: 23835
Number of sequences better than 1.0e-10: 1749
Number of HSP's better than 0.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 1212
Number of HSP's that attempted gapping in prelim test: 20186
Number of HSP's gapped (non-prelim): 2079
length of query: 335
length of database: 189,106,746
effective HSP length: 54
effective length of query: 281
effective length of database: 156,788,448
effective search space: 44057553888
effective search space used: 44057553888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)