BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1198 (PAB1198) DE:Hypothetical protein
         (177 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75026 hypothetical protein PAB1198 - Pyrococcus abyssi (st...   354  4e-97
pir||E71211 hypothetical protein PH1957 - Pyrococcus horikoshii ...   178  3e-44

>pir||E75026 hypothetical protein PAB1198 - Pyrococcus abyssi (strain Orsay)
           >gi|5459165|emb|CAB50651.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 177
           
 Score =  354 bits (898), Expect = 4e-97
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MGLKDALKYPPIFVGFLLLLFALFSSLLAIKPVVKVENVSGNLTPGEHIIEGKDVVTVFT 60
           MGLKDALKYPPIFVGFLLLLFALFSSLLAIKPVVKVENVSGNLTPGEHIIEGKDVVTVFT
Sbjct: 1   MGLKDALKYPPIFVGFLLLLFALFSSLLAIKPVVKVENVSGNLTPGEHIIEGKDVVTVFT 60

Query: 61  GNLTLSSENATVSVKHGTRVEHYILRNSTVVLRNLTEFPRVSTDGNVKYKLSVMGYAYPY 120
           GNLTLSSENATVSVKHGTRVEHYILRNSTVVLRNLTEFPRVSTDGNVKYKLSVMGYAYPY
Sbjct: 61  GNLTLSSENATVSVKHGTRVEHYILRNSTVVLRNLTEFPRVSTDGNVKYKLSVMGYAYPY 120

Query: 121 SWISPISFVAMIIGNFLAIAGFASYLTKMRENIKKKKAKEETGDRDVQGTPRREGRF 177
           SWISPISFVAMIIGNFLAIAGFASYLTKMRENIKKKKAKEETGDRDVQGTPRREGRF
Sbjct: 121 SWISPISFVAMIIGNFLAIAGFASYLTKMRENIKKKKAKEETGDRDVQGTPRREGRF 177


>pir||E71211 hypothetical protein PH1957 - Pyrococcus horikoshii
           >gi|3258401|dbj|BAA31084.1| (AP000007) 177aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 177
           
 Score =  178 bits (447), Expect = 3e-44
 Identities = 86/176 (48%), Positives = 119/176 (66%)

Query: 1   MGLKDALKYPPIFVGFLLLLFALFSSLLAIKPVVKVENVSGNLTPGEHIIEGKDVVTVFT 60
           MG+KDA++YP I  G LLL  +L  +L+++K  ++ E + G LTPG H +    ++T+  
Sbjct: 1   MGIKDAVRYPTILFGLLLLFLSLGLALISMKAELEREELKGTLTPGSHFLYSDRIITIVD 60

Query: 61  GNLTLSSENATVSVKHGTRVEHYILRNSTVVLRNLTEFPRVSTDGNVKYKLSVMGYAYPY 120
            NLTL S+NA+VSV  G +     L N+T+ L ++ ++P++ TDG V Y LSV+GYAYPY
Sbjct: 61  CNLTLYSKNASVSVYSGGKYYSLELSNNTITLSDMEDYPKIETDGEVLYTLSVIGYAYPY 120

Query: 121 SWISPISFVAMIIGNFLAIAGFASYLTKMRENIKKKKAKEETGDRDVQGTPRREGR 176
           SW+SPI FV MI G+ L++ GFASYL    E +KKK+ KE  G  DVQ TP REGR
Sbjct: 121 SWLSPIGFVLMIAGSILSLLGFASYLQGEMEKVKKKRRKERLGGEDVQRTPWREGR 176


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.138    0.393 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63432392
Number of Sequences: 2977
Number of extensions: 2291441
Number of successful extensions: 6951
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6949
Number of HSP's gapped (non-prelim): 2
length of query: 177
length of database: 189,106,746
effective HSP length: 55
effective length of query: 122
effective length of database: 156,189,961
effective search space: 19055175242
effective search space used: 19055175242
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)