BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1199 (PAB1199) DE:Hypothetical protein
         (189 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75026 hypothetical protein PAB1199 - Pyrococcus abyssi (st...   399  e-110
pir||D71211 hypothetical protein PH1956 - Pyrococcus horikoshii ...   376  e-103

>pir||D75026 hypothetical protein PAB1199 - Pyrococcus abyssi (strain Orsay)
           >gi|5459164|emb|CAB50650.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 189
           
 Score =  399 bits (1014), Expect = e-110
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MYKEPLGVKVDFNTGVIPGAKKIVRRLSDMKGYFLDEKSWEELVKKEDPIVYEVYAIEQE 60
           MYKEPLGVKVDFNTGVIPGAKKIVRRLSDMKGYFLDEKSWEELVKKEDPIVYEVYAIEQE
Sbjct: 1   MYKEPLGVKVDFNTGVIPGAKKIVRRLSDMKGYFLDEKSWEELVKKEDPIVYEVYAIEQE 60

Query: 61  EKEGDLNFATTILYPGKVGKEFFFTKGHYHSKKDRAEVYVALKGKGGMLLQTPEGEARWI 120
           EKEGDLNFATTILYPGKVGKEFFFTKGHYHSKKDRAEVYVALKGKGGMLLQTPEGEARWI
Sbjct: 61  EKEGDLNFATTILYPGKVGKEFFFTKGHYHSKKDRAEVYVALKGKGGMLLQTPEGEARWI 120

Query: 121 PMEPGTVVYVPPYWAHRTVNTGDEPFIFLAIYPADAGHDYGTIAERGFSKIVIEENGEVK 180
           PMEPGTVVYVPPYWAHRTVNTGDEPFIFLAIYPADAGHDYGTIAERGFSKIVIEENGEVK
Sbjct: 121 PMEPGTVVYVPPYWAHRTVNTGDEPFIFLAIYPADAGHDYGTIAERGFSKIVIEENGEVK 180

Query: 181 VVDNPRWKS 189
           VVDNPRWKS
Sbjct: 181 VVDNPRWKS 189


>pir||D71211 hypothetical protein PH1956 - Pyrococcus horikoshii
           >gi|3258400|dbj|BAA31083.1| (AP000007) 192aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 192
           
 Score =  376 bits (955), Expect = e-103
 Identities = 171/189 (90%), Positives = 186/189 (97%)

Query: 1   MYKEPLGVKVDFNTGVIPGAKKIVRRLSDMKGYFLDEKSWEELVKKEDPIVYEVYAIEQE 60
           MYKEPLGVKVDF +GVI GAKK+VRRLSDMKGYFLDE++W ELV++EDP+VYEVYA+EQE
Sbjct: 4   MYKEPLGVKVDFESGVIEGAKKLVRRLSDMKGYFLDEETWRELVEREDPVVYEVYAVEQE 63

Query: 61  EKEGDLNFATTILYPGKVGKEFFFTKGHYHSKKDRAEVYVALKGKGGMLLQTPEGEARWI 120
           EKEGDLNFATT+LYPGKVGKEFFFTKGH+H+K+DRAEVY+ALKGKGGMLLQTPEGEARWI
Sbjct: 64  EKEGDLNFATTVLYPGKVGKEFFFTKGHFHAKRDRAEVYIALKGKGGMLLQTPEGEARWI 123

Query: 121 PMEPGTVVYVPPYWAHRTVNTGDEPFIFLAIYPADAGHDYGTIAERGFSKIVIEENGEVK 180
           PMEPGTVVYVPPYWAHRTVNTGDEPFIFLAIYPADAGHDYGTIAE+GFSKIVIEENGEVK
Sbjct: 124 PMEPGTVVYVPPYWAHRTVNTGDEPFIFLAIYPADAGHDYGTIAEKGFSKIVIEENGEVK 183

Query: 181 VVDNPRWKS 189
           VVDNPRWK+
Sbjct: 184 VVDNPRWKN 192


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.140    0.425 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83368159
Number of Sequences: 2977
Number of extensions: 3705222
Number of successful extensions: 7559
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7557
Number of HSP's gapped (non-prelim): 2
length of query: 189
length of database: 189,106,746
effective HSP length: 51
effective length of query: 138
effective length of database: 158,583,909
effective search space: 21884579442
effective search space used: 21884579442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)