BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1202 1718165 1717761 -135 !not a gene!
         (135 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71210 hypothetical protein PH1951 - Pyrococcus horikoshii ...   122  2e-27

>pir||G71210 hypothetical protein PH1951 - Pyrococcus horikoshii
           >gi|3258395|dbj|BAA31078.1| (AP000007) 117aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 117
           
 Score =  122 bits (303), Expect = 2e-27
 Identities = 68/115 (59%), Positives = 79/115 (68%)

Query: 14  LTSLDFSTKLPPGLTPKSSLNSPAWGVNTNFLFLSASRSSAIIFNPSASITMGFSTFFMN 73
           +T+  FST+     +PKSSLNSPAWGV T  L L  S +SAII +PSAS T+GFST  M 
Sbjct: 1   MTTFPFSTRSSGTFSPKSSLNSPAWGVKTISLPLRMSLNSAIILSPSASTTIGFSTLSMI 60

Query: 74  SRTNSLVSSLVPIPGPITTASTLSESSRANSMCSPLKLSPGTSLTIKLGSSILLA 128
             TNS VSSL PIPGP+T AST S SS A  +CS +K  P TSLTI+ GS  LLA
Sbjct: 61  PLTNSFVSSLTPIPGPMTIASTFSTSSSALLICSGVKFKPSTSLTIRSGSFTLLA 115


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.126    0.344 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43672276
Number of Sequences: 2977
Number of extensions: 1521806
Number of successful extensions: 5447
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5446
Number of HSP's gapped (non-prelim): 1
length of query: 135
length of database: 189,106,746
effective HSP length: 61
effective length of query: 74
effective length of database: 152,599,039
effective search space: 11292328886
effective search space used: 11292328886
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 160 (66.7 bits)