BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1209 1712200 1711883 -106 !not a gene!
         (106 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71201 hypothetical protein PH1883 - Pyrococcus horikoshii ...   164  4e-40

>pir||F71201 hypothetical protein PH1883 - Pyrococcus horikoshii
           >gi|3258322|dbj|BAA31005.1| (AP000007) 137aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 137
           
 Score =  164 bits (410), Expect = 4e-40
 Identities = 82/106 (77%), Positives = 87/106 (81%)

Query: 1   MNPPPPLFLMSKNQLVSIPSKNIGGFTYSDIVYMYXXXXXXXXXXXXXAFWSGWVNLGLN 60
           MNPPPPLFLMSKNQLVSIPSKNIGGFTYS+IVYMY             AF SGWVNLGL 
Sbjct: 26  MNPPPPLFLMSKNQLVSIPSKNIGGFTYSEIVYMYSSFPISPLSIISLAFCSGWVNLGLK 85

Query: 61  GTINFTPAFLAALTISFPSSSVRAIGFSKSMSFPSSAALIATSLCL 106
           GTI+ TPAFLAA TIS PSSSV A+GFS+S+SFPSSAALIATSLCL
Sbjct: 86  GTISLTPAFLAAFTISLPSSSVSAMGFSRSISFPSSAALIATSLCL 131


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.135    0.414 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36440188
Number of Sequences: 2977
Number of extensions: 1058045
Number of successful extensions: 2040
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2039
Number of HSP's gapped (non-prelim): 1
length of query: 106
length of database: 189,106,746
effective HSP length: 50
effective length of query: 56
effective length of database: 159,182,396
effective search space: 8914214176
effective search space used: 8914214176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)