BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1210 (PAB1210) DE:DOLICHYL-PHOSPHATE MANNOOSYLTRANSFERASE
RELATED PROTEIN
(382 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75024 dolichyl-phosphate mannoosyltransferase related prot... 775 0.0
pir||B71201 hypothetical protein PH1879 - Pyrococcus horikoshii ... 711 0.0
pir||F72278 conserved hypothetical protein - Thermotoga maritima... 328 9e-89
>pir||H75024 dolichyl-phosphate mannoosyltransferase related protein PAB1210 -
Pyrococcus abyssi (strain Orsay)
>gi|5459152|emb|CAB50638.1| (AJ248288)
DOLICHYL-PHOSPHATE MANNOOSYLTRANSFERASE RELATED PROTEIN
[Pyrococcus abyssi]
Length = 382
Score = 775 bits (1979), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MKVVVGIPSYNNADTIGYVVKQAAEGLKKYFGGGIIVNSDGGSTDGTRDVVLSTKVPEGV 60
MKVVVGIPSYNNADTIGYVVKQAAEGLKKYFGGGIIVNSDGGSTDGTRDVVLSTKVPEGV
Sbjct: 1 MKVVVGIPSYNNADTIGYVVKQAAEGLKKYFGGGIIVNSDGGSTDGTRDVVLSTKVPEGV 60
Query: 61 EVYSFVYKWPIPGKGSAMKEIMEFAREKGADAVVFVDSDLRSITPEWIYKFAKPIEEGYD 120
EVYSFVYKWPIPGKGSAMKEIMEFAREKGADAVVFVDSDLRSITPEWIYKFAKPIEEGYD
Sbjct: 61 EVYSFVYKWPIPGKGSAMKEIMEFAREKGADAVVFVDSDLRSITPEWIYKFAKPIEEGYD 120
Query: 121 FVAPLYLRHKWDGTITNNIAYPMTASLYGLDVRQPIGGDFGISARMIDLYLEDESLWKTD 180
FVAPLYLRHKWDGTITNNIAYPMTASLYGLDVRQPIGGDFGISARMIDLYLEDESLWKTD
Sbjct: 121 FVAPLYLRHKWDGTITNNIAYPMTASLYGLDVRQPIGGDFGISARMIDLYLEDESLWKTD 180
Query: 181 VARFGVDIFLTTTAIANKKKIIQVSLGMKIHNPKDPAASLGPMFNQVVGTLFMLMKKYEE 240
VARFGVDIFLTTTAIANKKKIIQVSLGMKIHNPKDPAASLGPMFNQVVGTLFMLMKKYEE
Sbjct: 181 VARFGVDIFLTTTAIANKKKIIQVSLGMKIHNPKDPAASLGPMFNQVVGTLFMLMKKYEE 240
Query: 241 VWRDVRELRPVETWGEEAKGEPEEVKVNLELLKQRAQELFLKEEATLKKIFSEEIFEEVK 300
VWRDVRELRPVETWGEEAKGEPEEVKVNLELLKQRAQELFLKEEATLKKIFSEEIFEEVK
Sbjct: 241 VWRDVRELRPVETWGEEAKGEPEEVKVNLELLKQRAQELFLKEEATLKKIFSEEIFEEVK 300
Query: 301 EAIKTFEFPDELWAKVLFEGAVAYRDGLIKNAEPLIPLYFAKTADFVIKTLDMPTIEAEK 360
EAIKTFEFPDELWAKVLFEGAVAYRDGLIKNAEPLIPLYFAKTADFVIKTLDMPTIEAEK
Sbjct: 301 EAIKTFEFPDELWAKVLFEGAVAYRDGLIKNAEPLIPLYFAKTADFVIKTLDMPTIEAEK 360
Query: 361 LIKERARTFLREKDYLINKWFG 382
LIKERARTFLREKDYLINKWFG
Sbjct: 361 LIKERARTFLREKDYLINKWFG 382
>pir||B71201 hypothetical protein PH1879 - Pyrococcus horikoshii
>gi|3258318|dbj|BAA31001.1| (AP000007) 382aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 382
Score = 711 bits (1815), Expect = 0.0
Identities = 333/382 (87%), Positives = 368/382 (96%)
Query: 1 MKVVVGIPSYNNADTIGYVVKQAAEGLKKYFGGGIIVNSDGGSTDGTRDVVLSTKVPEGV 60
MKVVVGIPSYNNADTIGYVVKQ AEGLKKYFGGGIIVNSDGGSTDGTRDVVLSTKVPEGV
Sbjct: 1 MKVVVGIPSYNNADTIGYVVKQVAEGLKKYFGGGIIVNSDGGSTDGTRDVVLSTKVPEGV 60
Query: 61 EVYSFVYKWPIPGKGSAMKEIMEFAREKGADAVVFVDSDLRSITPEWIYKFAKPIEEGYD 120
EVYSFVYKWPIPGKGSAMKE+MEFA+EK AD +VFVDSDLRSITPEWIYKFAKPIEEGYD
Sbjct: 61 EVYSFVYKWPIPGKGSAMKEVMEFAKEKDADVIVFVDSDLRSITPEWIYKFAKPIEEGYD 120
Query: 121 FVAPLYLRHKWDGTITNNIAYPMTASLYGLDVRQPIGGDFGISARMIDLYLEDESLWKTD 180
FVAPLYLRHKWDGTITNNIAYPMTASLYGLD+RQPIGGDFGISA+MID+YLEDE +WKTD
Sbjct: 121 FVAPLYLRHKWDGTITNNIAYPMTASLYGLDIRQPIGGDFGISAKMIDIYLEDEEVWKTD 180
Query: 181 VARFGVDIFLTTTAIANKKKIIQVSLGMKIHNPKDPAASLGPMFNQVVGTLFMLMKKYEE 240
VARFGVDIFLTTTAIANKK++IQVSLGMKIHNPKDPAASLGPMFNQVVGTLFMLM KYE
Sbjct: 181 VARFGVDIFLTTTAIANKKRVIQVSLGMKIHNPKDPAASLGPMFNQVVGTLFMLMDKYEN 240
Query: 241 VWRDVRELRPVETWGEEAKGEPEEVKVNLELLKQRAQELFLKEEATLKKIFSEEIFEEVK 300
VW+DV+E++PV+TWGEE +GEPEEVKVNLELLKQR+QELF KEE TLK++ S E+F++VK
Sbjct: 241 VWKDVKEIKPVKTWGEEVEGEPEEVKVNLELLKQRSQELFKKEEETLKRVLSREVFDDVK 300
Query: 301 EAIKTFEFPDELWAKVLFEGAVAYRDGLIKNAEPLIPLYFAKTADFVIKTLDMPTIEAEK 360
EA+KTF+FPDELWAKVLF+GA+AYR+G+IKNAE LIPLYFAKTADFVIKTLD+PT+EAEK
Sbjct: 301 EALKTFDFPDELWAKVLFDGAIAYRNGIIKNAESLIPLYFAKTADFVIKTLDLPTVEAEK 360
Query: 361 LIKERARTFLREKDYLINKWFG 382
L+++RA+ FL+EKDYLI +WFG
Sbjct: 361 LVRKRAKVFLQEKDYLIERWFG 382
>pir||F72278 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981783|gb|AAD36304.1|AE001779_6 (AE001779)
conserved hypothetical protein [Thermotoga maritima]
Length = 482
Score = 328 bits (831), Expect = 9e-89
Identities = 178/384 (46%), Positives = 250/384 (64%), Gaps = 14/384 (3%)
Query: 1 MKVVVGIPSYNNADTIGYVVKQAAEGLKKYFGG-GIIVNSDGGSTDGTRDVVLSTKVPEG 59
MKVVVGIPSYNNA+TI +V + AA+G+ +F G G+IVNSDGGS DGTR+ + T G
Sbjct: 103 MKVVVGIPSYNNAETISHVARTAAQGIVDFFDGDGMIVNSDGGSADGTRERFMETDT-FG 161
Query: 60 VEVYSFVYKWPIPGKGSAMKEIMEFAREKGADAVVFVDSDLRSITPEWIYKFAKPIEEGY 119
+ SFVY+ +PGKGSAM+ IMEFA ++ A+AVVF+D+DLRS+ P W+ + A P+ +G
Sbjct: 162 LPKESFVYEG-LPGKGSAMRAIMEFALKQDAEAVVFLDADLRSVKPWWVERLAGPVLKGE 220
Query: 120 -DFVAPLYLRHKWDGTITNNIAYPMTASLYGLDVRQPIGGDFGISARMIDLYL-EDESLW 177
D+V P YLRH++DGTITNN+ +PMTA LYG VRQPIGGDFG+ +++++YL + + +W
Sbjct: 221 ADYVTPFYLRHRFDGTITNNVCFPMTAVLYGKKVRQPIGGDFGVGRKLLEIYLGKPKEIW 280
Query: 178 KTDVARFGVDIFLTTTAIANKKKIIQVSLGMKIHNPKDPAASLGPMFNQVVGTLFMLMKK 237
TDVARFG+DI++TTTAI +++Q +LG K+H+ KDP L MF QVVGTLF L+
Sbjct: 281 NTDVARFGIDIWMTTTAINESGRVVQAALGTKVHDVKDPGKHLKGMFLQVVGTLFELVIT 340
Query: 238 YEEVWRDVRELRPVETWGEEAKGEPEEVKVNLELLKQRAQELFLKEEATLKKIFSEEIFE 297
YE VW+++ ++ V +GE + E + +++ LK+ A+E + E I
Sbjct: 341 YENVWKEIWKIEDVPIYGETPQEEVPSMSIDIGNLKKLARETLEEVE-----YIDRGILS 395
Query: 298 EVKEAIKTFEFPDELWAKVLFEGAVAYRDGLIKN-AEPLIPLYFAKTADFVIKTLDMPTI 356
EVKE+ T W L+ AV YR K E L+P YFA+TA F + +
Sbjct: 396 EVKES-GTLSLSS--WVDTLYRSAVQYRKTRDKKVVENLLPFYFARTARFAEEVKSLSDE 452
Query: 357 EAEKLIKERARTFLREKDYLINKW 380
EAE+ + E+ FL +K L +W
Sbjct: 453 EAERYVYEQLDVFLEKKHSLREEW 476
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144160158
Number of Sequences: 2977
Number of extensions: 6308527
Number of successful extensions: 16662
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16653
Number of HSP's gapped (non-prelim): 3
length of query: 382
length of database: 189,106,746
effective HSP length: 55
effective length of query: 327
effective length of database: 156,189,961
effective search space: 51074117247
effective search space used: 51074117247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)