BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1214 (gltB-2) DE:GLUTAMATE SYNTHASE SMALL CHAIN.
(475 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75024 glutamate synthase small chain. PAB1214 - Pyrococcus... 957 0.0
pir||D71200 probable glutamate synthase small chain - Pyrococcus... 899 0.0
pir||E75069 glutamate synthase small chain PAB1738 - Pyrococcus ... 788 0.0
dbj|BAA21091.1| (D86223) glutamate synthase [Pyrococcus sp.] 765 0.0
pir||D71076 probable glutamate synthase small chain - Pyrococcus... 742 0.0
pir||H72230 glutamate synthase, beta subunit - Thermotoga mariti... 509 e-143
pir||D71288 probable glutamate synthase (gltA) - syphilis spiroc... 405 e-112
pir||A70477 glutamate synthase small subunit gltD - Aquifex aeol... 395 e-109
pir||JC5184 glutamate synthase (GOGAT) (EC 1.4.1.-) small chain ... 283 3e-75
sp|P09832|GLTD_ECOLI GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLU... 283 3e-75
sp|P37127|AEGA_ECOLI AEGA PROTEIN >gi|7451584|pir||C65022 yffG p... 279 5e-74
dbj|BAA16342.1| (D90875) similar to [SwissProt Accession Number ... 279 5e-74
pir||G83017 glutamate synthase small chain PA5035 [imported] - P... 272 5e-72
gb|AAB18329.1| (U73807) formate dehydrogenase beta subunit [Moor... 270 3e-71
pir||G82083 glutamate synthase, small subunit VC2377 [imported] ... 266 4e-70
gb|AAG38999.1|AF192408_3 (AF192408) NADPH-dependent glutamate sy... 265 8e-70
pir||H82523 glutamate synthase, beta subunit XF2709 [imported] -... 264 2e-69
emb|CAC11556.1| (AL445064) GLUTAMATE SYNTHASE [NADPH] SMALL CHAI... 259 4e-68
sp|Q05756|GLTD_AZOBR GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLU... 256 4e-67
sp|Q46820|YGFT_ECOLI HYPOTHETICAL 69.1 KD PROTEIN IN KDUI-LYSS I... 255 9e-67
pir||G65072 hypothetical protein b2887 - Escherichia coli (strai... 255 9e-67
gb|AAD56915.1|AF180145_7 (AF180145) glutamate synthase small sub... 249 7e-65
pir||G72281 glutamate synthase, beta subunit - Thermotoga mariti... 240 3e-62
pir||G83590 probable oxidoreductase PA0440 [imported] - Pseudomo... 239 5e-62
gb|AAB46944.1| (L34011) Fe-S center and glutamate synthase (GltD... 239 6e-62
gb|AAD18034.1| (AF119099) glutamate synthase small subunit [Pseu... 238 8e-62
pir||B29617 glutamate synthase (NADPH) (EC 1.4.1.13) small chain... 230 3e-59
pir||G70655 probable small subunit of NADH-dependent glutamate s... 224 2e-57
pir||T34868 probable glutamate synthase small chain - Streptomyc... 219 6e-56
pir||JE0142 glutamate synthase (EC 1.4.1.-) small chain - Rhodob... 219 8e-56
emb|CAA73084.1| (Y12481) glutamine--pyruvate aminotransferase [R... 218 1e-55
gb|AAC17982.1| (AF031406) NADPH dependent glutamate synthase sma... 213 3e-54
dbj|BAA35120.1| (AB008845) NADH dependent Glutamate Synthase [Or... 212 1e-53
pir||A64983 hypothetical protein b2146 - Escherichia coli (strai... 210 4e-53
sp|Q28007|DPYD_BOVIN DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] (DP... 208 8e-53
sp|Q28943|DPYD_PIG DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] PRECU... 205 1e-51
pir||H69634 glutamate synthase (small subunit) gltB - Bacillus s... 203 4e-51
dbj|BAA33218.1| (D85035) dihydropyrimidine dehydrogenase [Rattus... 203 4e-51
pir||S74625 NADH-glutamate synthase small chain gltD - Synechocy... 203 5e-51
pir||F65071 hypothetical protein b2878 - Escherichia coli (strai... 202 8e-51
sp|Q03460|GLSN_MEDSA GLUTAMATE SYNTHASE [NADH] PRECURSOR (NADH-G... 201 1e-50
pir||B75551 glutamate synthase, small subunit - Deinococcus radi... 201 1e-50
dbj|BAA12742.1| (D85230) small subunit of NADH-dependent glutama... 200 2e-50
gb|AAB41904.1| (L37606) NADH-dependent glutamate synthase [Medic... 199 4e-50
gi|4503373 dihydropyrimidine dehydrogenase [Homo sapiens] >gi|24... 199 6e-50
gb|AAB51366.1| (U20938) No definition line found [Homo sapiens] ... 199 6e-50
gb|AAF49409.1| (AE003526) CG9674 gene product [alt 1] [Drosophil... 199 7e-50
gb|AAF49410.1| (AE003526) CG9674 gene product [alt 3] [Drosophil... 199 7e-50
gi|6320030 Glutamate synthase (NADPH); Glt1p [Saccharomyces cere... 198 9e-50
dbj|BAA97323.1| (AB020754) NADH-dependent glutamate synthase [Ar... 198 9e-50
pir||F82085 glutamate synthase, small chain VC2374 [imported] - ... 198 9e-50
sp|Q12680|GLT1_YEAST GLUTAMATE SYNTHASE [NADPH] PRECURSOR (NADPH... 198 1e-49
dbj|BAB05448.1| (AP001513) glutamate synthase (small subunit) [B... 198 1e-49
sp|Q18164|DPYD_CAEEL PROBABLE DIHYDROPYRIMIDINE DEHYDROGENASE [N... 197 2e-49
pir||T49818 probable glutamate synthase (NADPH) [imported] - Neu... 193 3e-48
pir||T24629 glutamate synthase (NADH) (EC 1.4.1.14) precursor [s... 191 2e-47
gb|AAD41676.1|AF082880_2 (AF082880) glutamate synthase small sub... 189 5e-47
pir||G72689 probable glutamate synthase small chain APE0935 - Ae... 183 4e-45
gb|AAF46461.2| (AE003446) Reg-3 gene product [Drosophila melanog... 182 1e-44
pir||D81416 glutamate synthase (NADPH) (EC 1.4.1.13) small chain... 181 1e-44
pir||T28635 glutamate synthase (NADH) (EC 1.4.1.14) - malaria pa... 175 1e-42
gi|11421673 dihydropyrimidine dehydrogenase [Homo sapiens] 165 1e-39
dbj|BAA75930.1| (AB024708) glutamine 2-oxoglutarate aminotransfe... 161 1e-38
gb|AAG13082.1| (U84760) DsrL [Allochromatium vinosum] 161 2e-38
dbj|BAA83927.1| (AB024555) GLTB [Bacillus halodurans] 97 4e-19
pir||D71016 probable thioredoxin reductase - Pyrococcus horikosh... 88 2e-16
pir||D75116 thioredoxin reductase (trxb) PAB0500 - Pyrococcus ab... 83 6e-15
emb|CAB60604.1| (AL132865) cDNA EST yk60c5.5 comes from this gen... 83 6e-15
emb|CAC12113.1| (AL445066) probable thioredoxin reductase [Therm... 81 3e-14
sp|O06465|AHPF_XANCH ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi... 78 3e-13
gb|AAD29664.1|AF124757_24 (AF124757) thioredoxin reductase [Zymo... 78 3e-13
dbj|BAB07290.1| (AP001519) thioredoxin reductase (NADPH) [Bacill... 77 4e-13
pir||C75513 probable ferredoxin/ferredoxin--NADP reductase - Dei... 76 1e-12
pir||A75330 thioredoxin reductase - Deinococcus radiodurans (str... 76 1e-12
sp|P52213|TRXB_CLOLI THIOREDOXIN REDUCTASE (TRXR) >gi|2117556|pi... 76 1e-12
gb|AAC97377.1| (AF107264) glutamate synthase small subunit [Rhiz... 76 1e-12
pir||C75218 probable monooxygenase PAB0184 - Pyrococcus abyssi (... 76 1e-12
gi|11499149 thioredoxin reductase (trxB) [Archaeoglobus fulgidus... 75 1e-12
gb|AAG13948.1|AF283287_1 (AF283287) ferrodoxin-NADP(+) reductase... 75 1e-12
emb|CAA11546.1| (AJ223781) thioredoxin reductase [Staphylococcus... 75 2e-12
pir||T45351 ferredoxin [imported] - Mycobacterium leprae >gi|244... 74 3e-12
sp|Q10547|FPRB_MYCTU PROBABLE FERREDOXIN/FERREDOXIN--NADP REDUCT... 74 3e-12
pir||D72383 NADH oxidase - Thermotoga maritima (strain MSB8) >gi... 74 3e-12
emb|CAC01564.1| (AL391039) 2,4-dienoyl-CoA reductase [NADPH] [St... 74 3e-12
pir||A70920 probable adrenodoxin and NADPH ferredoxin reductase ... 74 4e-12
pir||H71171 probable NADH oxidase - Pyrococcus horikoshii >gi|32... 72 1e-11
emb|CAB60462.1| (AL132856) putative ferredoxin/ferredoxin-NADP r... 72 1e-11
sp|O66790|TRXB_AQUAE THIOREDOXIN REDUCTASE (TRXR) >gi|7427756|pi... 72 2e-11
sp|P56522|ADRO_RAT NADPH:ADRENODOXIN OXIDOREDUCTASE PRECURSOR (A... 72 2e-11
pir||D75107 NADH oxidase (noxa-2) PAB1931 - Pyrococcus abyssi (s... 71 2e-11
pir||T45314 probable ferredoxin [imported] - Mycobacterium lepra... 71 3e-11
sp|O05204|AHPF_STAAU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi... 71 4e-11
gi|6679767 ferredoxin reductase [Mus musculus] >gi|3023277|sp|Q6... 70 5e-11
pir||G69759 thioredoxin reductase homolog ycgT - Bacillus subtil... 70 5e-11
sp|Q9Z8M4|TRXB_CHLPN THIOREDOXIN REDUCTASE (TRXR) >gi|7431887|pi... 70 5e-11
gi|4758354 ferredoxin reductase; adrenodoxin reductase; Ferredox... 70 6e-11
gb|AAA51668.1| (M58509) adrenodoxin reductase [Homo sapiens] 70 6e-11
gb|AAA51669.1| (M58509) adrenodoxin reductase [Homo sapiens] 70 6e-11
sp|P22570|ADRO_HUMAN NADPH:ADRENODOXIN OXIDOREDUCTASE PRECURSOR ... 70 6e-11
pir||H83044 2,4-dienoyl-CoA reductase FadH2 PA4814 [imported] - ... 70 6e-11
>pir||B75024 glutamate synthase small chain. PAB1214 - Pyrococcus abyssi
(strain Orsay) >gi|5459146|emb|CAB50632.1| (AJ248288)
GLUTAMATE SYNTHASE SMALL CHAIN. [Pyrococcus abyssi]
Length = 475
Score = 957 bits (2448), Expect = 0.0
Identities = 475/475 (100%), Positives = 475/475 (100%)
Query: 1 MPKLIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
MPKLIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI
Sbjct: 1 MPKLIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
Query: 61 DIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPI 120
DIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPI
Sbjct: 61 DIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPI 120
Query: 121 NIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
NIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV
Sbjct: 121 NIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
Query: 181 TIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEY 240
TIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEY
Sbjct: 181 TIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEY 240
Query: 241 DAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIG 300
DAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIG
Sbjct: 241 DAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIG 300
Query: 301 AGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE 360
AGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE
Sbjct: 301 AGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE 360
Query: 361 EGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLK 420
EGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLK
Sbjct: 361 EGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLK 420
Query: 421 VREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKSA 475
VREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKSA
Sbjct: 421 VREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKSA 475
>pir||D71200 probable glutamate synthase small chain - Pyrococcus horikoshii
>gi|3258312|dbj|BAA30995.1| (AP000007) 476aa long
hypothetical glutamate synthase small chain [Pyrococcus
horikoshii]
Length = 476
Score = 899 bits (2297), Expect = 0.0
Identities = 433/475 (91%), Positives = 462/475 (97%)
Query: 1 MPKLIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
MPKLIKERVPTPER ER++DF+EVNLGYTWELAL+EAERCLQCP EYAPCIKGCPVNI
Sbjct: 1 MPKLIKERVPTPERPVEERIKDFDEVNLGYTWELALKEAERCLQCPVEYAPCIKGCPVNI 60
Query: 61 DIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPI 120
+IPGFI+ALREN+DNPRKAV+EAL+VIWACNSLPAITGRVCPQEDQCEG CVVGKVGDP+
Sbjct: 61 NIPGFIKALRENKDNPRKAVKEALRVIWACNSLPAITGRVCPQEDQCEGACVVGKVGDPV 120
Query: 121 NIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
NIGKLERFVADYAR+HGIDDELLMEEI+ IK+NGK+VAVIGAGPAGLTCAAELAKMGY+V
Sbjct: 121 NIGKLERFVADYARQHGIDDELLMEEIKNIKKNGKKVAVIGAGPAGLTCAAELAKMGYDV 180
Query: 181 TIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEY 240
TI+EALHEPGGVLAYGIPEFRLPKEILRKELKKL LGV+IKTDHIVGRTVTIPELL+EY
Sbjct: 181 TIYEALHEPGGVLAYGIPEFRLPKEILRKELKKLSILGVKIKTDHIVGRTVTIPELLKEY 240
Query: 241 DAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIG 300
DAIFI TGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPI+VGKRVIVIG
Sbjct: 241 DAIFIGTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIIVGKRVIVIG 300
Query: 301 AGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE 360
AGNTAMDAARSALRLGAEVIIAYRRG+EDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE
Sbjct: 301 AGNTAMDAARSALRLGAEVIIAYRRGEEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE 360
Query: 361 EGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLK 420
GRVKAVKFEKMKPLEERD RGKRKI+GTGEY+TVE DTV+IAIGQTPN+I+W+TTPGLK
Sbjct: 361 NGRVKAVKFEKMKPLEERDSRGKRKIIGTGEYVTVETDTVVIAIGQTPNRIIWKTTPGLK 420
Query: 421 VREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKSA 475
VRE+GTI+VDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSK +
Sbjct: 421 VRENGTIVVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKKS 475
>pir||E75069 glutamate synthase small chain PAB1738 - Pyrococcus abyssi (strain
Orsay) >gi|5458370|emb|CAB49858.1| (AJ248286) GLUTAMATE
SYNTHASE SMALL CHAIN [Pyrococcus abyssi]
Length = 474
Score = 788 bits (2012), Expect = 0.0
Identities = 389/475 (81%), Positives = 428/475 (89%), Gaps = 1/475 (0%)
Query: 1 MPKLIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
MPKLIKERVPTPERS ER+RDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI
Sbjct: 1 MPKLIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
Query: 61 DIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPI 120
DIPGFIRALRENRD+P KAVREALK+IW NSLPAITGRVCPQEDQCEGVCVVGKVGDP+
Sbjct: 61 DIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPV 120
Query: 121 NIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
NIGKLERFVADYAR+HGI+DELL E+IRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV
Sbjct: 121 NIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
Query: 181 TIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEY 240
TIFEALHEPGGVLAYGIPEFRLPKEI++KE++KLK LGV+I+T+ +VG+TVT EL EE+
Sbjct: 181 TIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEF 240
Query: 241 DAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIG 300
DAIFI TGAGTP++ PG+NLNGIYSANEFLTRINLMKAYKFPEYDTPI +GKRV VIG
Sbjct: 241 DAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIG 300
Query: 301 AGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE 360
AGNTAMDAARSALRLGAEV I YRR +++MTAR EE++HA+EEGVKFMF V+P FIGDE
Sbjct: 301 AGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
Query: 361 EGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLK 420
G +KA++ EKMK L E D+ G+R+ + TGE +E DT IIAIGQTPNK +T P LK
Sbjct: 361 NGNLKAIELEKMK-LGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELK 419
Query: 421 VREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKSA 475
V E G IIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIH+YLS S+
Sbjct: 420 VDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS 474
>dbj|BAA21091.1| (D86223) glutamate synthase [Pyrococcus sp.]
Length = 481
Score = 765 bits (1953), Expect = 0.0
Identities = 375/471 (79%), Positives = 425/471 (89%), Gaps = 2/471 (0%)
Query: 3 KLIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDI 62
KLIKERVPTPER P ER++DF EVNLGYT+ELA++EAERCLQCP EYAPCIKGCPV+I+I
Sbjct: 5 KLIKERVPTPERPPEERIKDFKEVNLGYTFELAVKEAERCLQCPYEYAPCIKGCPVHINI 64
Query: 63 PGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINI 122
PGFI L E RD+P KAV+EAL VIWACNSLPA TGRVCPQEDQCE CV+GKVGD INI
Sbjct: 65 PGFISKLVEYRDDPDKAVKEALNVIWACNSLPATTGRVCPQEDQCEMNCVMGKVGDKINI 124
Query: 123 GKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTI 182
GKLERFVADYARE GID+ELL E I I++ G++VA+IGAGPAGLT A ELAK+GY+VTI
Sbjct: 125 GKLERFVADYAREKGIDEELLFEIIPKIEKKGQKVAIIGAGPAGLTAAGELAKLGYDVTI 184
Query: 183 FEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDA 242
+EALHEPGGVL YGIPEFRLPKEI+ KE++KL+ LGV+I TDH+VGRTVTI ELL+EYDA
Sbjct: 185 YEALHEPGGVLMYGIPEFRLPKEIVNKEIEKLRKLGVKILTDHVVGRTVTIEELLQEYDA 244
Query: 243 IFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAG 302
+FI +GAGTP+L+ PGINLNGIY+ANEFLTR+NLMKAY FPEYDTP+ VGK+VIVIGAG
Sbjct: 245 VFIGSGAGTPRLINAPGINLNGIYTANEFLTRVNLMKAYLFPEYDTPVYVGKKVIVIGAG 304
Query: 303 NTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEG 362
NTAMDAARSA R GAEV IAYRRG+ED++AR EEV+HAKEEG+KF++FVNPVEFIGDE G
Sbjct: 305 NTAMDAARSARRFGAEVTIAYRRGEEDVSAREEEVEHAKEEGIKFVYFVNPVEFIGDENG 364
Query: 363 RVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVR 422
RVKAVKFEKMK L+ERD RGKRKIVGTGEY+T+EADTVIIAIG+ PN+++ TPGLKV
Sbjct: 365 RVKAVKFEKMKALDERDARGKRKIVGTGEYVTLEADTVIIAIGKHPNRLI-INTPGLKV- 422
Query: 423 EDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSK 473
E G I+VDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL+K
Sbjct: 423 ERGKIVVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLTK 473
>pir||D71076 probable glutamate synthase small chain - Pyrococcus horikoshii
>gi|3257287|dbj|BAA29970.1| (AP000004) 472aa long
hypothetical glutamate synthase small chain [Pyrococcus
horikoshii]
Length = 472
Score = 742 bits (1896), Expect = 0.0
Identities = 369/474 (77%), Positives = 414/474 (86%), Gaps = 9/474 (1%)
Query: 1 MPKLIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
MPKLIKERVPTPER ER++DF EVNLGYT+ELA +EAERCLQCP EYAPCIKGCPV+I
Sbjct: 1 MPKLIKERVPTPERPVEERIKDFKEVNLGYTFELAKKEAERCLQCPPEYAPCIKGCPVHI 60
Query: 61 DIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPI 120
+IP FI ++E ++ AL++IW N+LPAITGRVCPQEDQCEG CVVGKVGDP+
Sbjct: 61 NIPAFIAKIKEGD------IKGALRIIWNDNTLPAITGRVCPQEDQCEGACVVGKVGDPV 114
Query: 121 NIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
NIGKLERFVADYAREHGI++ELL E + +VAV+GAGPAGLTCA ELAKMGY+V
Sbjct: 115 NIGKLERFVADYAREHGIEEELLREFTEKCDGSKGKVAVVGAGPAGLTCAGELAKMGYKV 174
Query: 181 TIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEY 240
TIFEALH+PGGVLAYGIPEFRLPKEIL ELKKLK LGVEI+TDH+VG+TVT+ ELL+EY
Sbjct: 175 TIFEALHKPGGVLAYGIPEFRLPKEILDHELKKLKMLGVEIRTDHVVGKTVTLDELLQEY 234
Query: 241 DAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIG 300
DA+FI TGAGTPKLL IPGI L+ IYSANEFLTRINLMKAY+FPEYDTPI VGK+VIVIG
Sbjct: 235 DAVFIGTGAGTPKLLNIPGILLDRIYSANEFLTRINLMKAYEFPEYDTPIAVGKKVIVIG 294
Query: 301 AGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE 360
AGNTAMDAARSALRLGAEV IAYRRG+EDMTAR EE++HA+EEGVKF FF+ PVEFIGDE
Sbjct: 295 AGNTAMDAARSALRLGAEVTIAYRRGREDMTAREEEIKHAEEEGVKFEFFLQPVEFIGDE 354
Query: 361 EGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPG-L 419
GRVKAVKFE+ KPLEERD +GKRKIVGTGEY+T+EADTVIIAIG PNKI+ T G L
Sbjct: 355 NGRVKAVKFERTKPLEERDSKGKRKIVGTGEYVTLEADTVIIAIGLEPNKII--TEDGRL 412
Query: 420 KVREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSK 473
K DGTI+VDENLMTSIPGVFAGGDAIRGEATVILAMGDG++AAKAI EY+ +
Sbjct: 413 KTNPDGTIVVDENLMTSIPGVFAGGDAIRGEATVILAMGDGKRAAKAIDEYIRR 466
>pir||H72230 glutamate synthase, beta subunit - Thermotoga maritima (strain
MSB8) >gi|4982213|gb|AAD36707.1|AE001806_17 (AE001806)
glutamate synthase, beta subunit [Thermotoga maritima]
Length = 468
Score = 509 bits (1296), Expect = e-143
Identities = 269/470 (57%), Positives = 341/470 (72%), Gaps = 19/470 (4%)
Query: 8 RVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIR 67
+ P E+SP R R+F EV LGYT E AL EA+RCLQCP PC+ GCPV IDIPGFIR
Sbjct: 5 KTPMKEQSPESRRRNFEEVALGYTLEEALEEAQRCLQCPTH--PCVSGCPVEIDIPGFIR 62
Query: 68 ALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGD--PINIGKL 125
LR+ + + E+ +++ + N+LPA+ GRVCPQE QCE CVVGK+ D P+ IG+L
Sbjct: 63 KLRDGK------LEESYRILKSYNNLPAVCGRVCPQEVQCESRCVVGKMKDSEPVAIGRL 116
Query: 126 ERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEA 185
ERFVAD+A E+ +D ++ + G K+ ++VAV+G+GPAGLT AA+LAKMGY V IFEA
Sbjct: 117 ERFVADWAAENLEED---VKPLAGSKK--EKVAVVGSGPAGLTAAADLAKMGYHVDIFEA 171
Query: 186 LHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFI 245
H+PGGVL YGIPEFRLPK I+ +E+ ++ LGV + +VG+TV + ELL EYDA+FI
Sbjct: 172 FHKPGGVLVYGIPEFRLPKRIVEREVSYIRKLGVNFHLNTVVGKTVKVKELLSEYDAVFI 231
Query: 246 STGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTA 305
TGAGTPK + IPG NLNG+YSANEFLTR+NLMKAY FPEYDTPI VGK+V VIGAGNTA
Sbjct: 232 GTGAGTPKFMGIPGTNLNGVYSANEFLTRVNLMKAYLFPEYDTPIRVGKKVAVIGAGNTA 291
Query: 306 MDAARSALRLGAE-VIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRV 364
MDAARSALRLGAE V I YRR + +M AR EE HA EEG++F++ P+ +IGD G V
Sbjct: 292 MDAARSALRLGAEKVYIVYRRTEREMPARREEYHHALEEGIEFLWLTLPIRYIGDANGNV 351
Query: 365 KAVKFEKMKPLEERDKRGK-RKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVRE 423
+A++ +M+ L+E D G+ R + G +E D VI AIGQ PN++L PGL++ E
Sbjct: 352 EAMECVRME-LKEADGSGRPRPVPIEGSNFVLEVDMVIEAIGQGPNRVLLSEFPGLELNE 410
Query: 424 DGTIIVDENL-MTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLS 472
G I DE+ TS+ GVFAGGD + G ATVI AMG G+KAA+ IH YL+
Sbjct: 411 RGYIKADEDTGATSVKGVFAGGDIVTGAATVIKAMGAGKKAAQFIHSYLT 460
>pir||D71288 probable glutamate synthase (gltA) - syphilis spirochete
>gi|3323040|gb|AAC65703.1| (AE001245) glutamate synthase
(gltA) [Treponema pallidum]
Length = 518
Score = 405 bits (1029), Expect = e-112
Identities = 220/468 (47%), Positives = 306/468 (65%), Gaps = 24/468 (5%)
Query: 16 PVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDN 75
P +R E LG+T + AL E++RCL C + PC+KGCPV + IP FI ++
Sbjct: 67 PKKRSLLMQEAALGFTEQQALVESQRCLNCKTK--PCVKGCPVGVPIPEFIACVQ----- 119
Query: 76 PRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGK----VGDPINIGKLERFVAD 131
R A +EA+ +I + LPAI GRVCP E QC+ C VGK V ++IG LERFVAD
Sbjct: 120 -RGAFKEAVDIIKTTSLLPAICGRVCPHERQCQLQCTVGKMFKDVSKAVSIGALERFVAD 178
Query: 132 YAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGG 191
+ R+HG ++ + K+VAVIG+GPAGL A++ A+ G+ VT+FEALH+PGG
Sbjct: 179 WERQHG---QITVPYCA--PSTHKKVAVIGSGPAGLAVASDTARAGHSVTVFEALHKPGG 233
Query: 192 VLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEY--DAIFISTGA 249
V+ YGIPEFRLPKE++ E++ LK +GV + + +VGRT T+ +L +Y DA+FI TGA
Sbjct: 234 VVTYGIPEFRLPKEVVVTEIETLKKMGVTFRMNFLVGRTATLEQLFSQYGFDAVFIGTGA 293
Query: 250 GTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAA 309
G P+ + I G L G+++AN++LTR LMKAY DTP+ K V+V+G GN A+D++
Sbjct: 294 GLPRFMNIEGEELCGVFAANDYLTRATLMKAYDTAHADTPVYAAKSVVVVGGGNVAVDSS 353
Query: 310 RSALRLGAE-VIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVK 368
R+ALRLGAE V YR+ + DMTA +EE+ A++EGV F F +GDEEG V+AV
Sbjct: 354 RTALRLGAEQVHCLYRKTRADMTACVEEIAQAEDEGVTFHFLCQTTRILGDEEGNVRAVV 413
Query: 369 FEKMKPLEERDKRGKRKIVGTGE-YITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTI 427
F + +E+ G+R + G+ + AD VI+A+G N ++ +TT L V E GTI
Sbjct: 414 F---RDCQEQIDAGERVFLPCGDAECKLAADAVIVAVGNGSNPLMAKTTRSLAVSERGTI 470
Query: 428 IVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKSA 475
+VDE+ TSIPGV+AGGD + G ATVI AMG GR+AA +I+ YL++ A
Sbjct: 471 VVDEDQRTSIPGVWAGGDIVLGAATVIRAMGQGRRAAASINAYLAQKA 518
>pir||A70477 glutamate synthase small subunit gltD - Aquifex aeolicus
>gi|2984275|gb|AAC07800.1| (AE000770) glutamate synthase
small subunit gltD [Aquifex aeolicus]
Length = 476
Score = 395 bits (1004), Expect = e-109
Identities = 225/475 (47%), Positives = 302/475 (63%), Gaps = 25/475 (5%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+R P P ERV+ F E LGY+ LAL EA+RCL C CIKGCPV++DIPGFI
Sbjct: 9 DRNKEPTLPPEERVKTFREFELGYSVNLALDEAQRCLFCKDAEQRCIKGCPVHVDIPGFI 68
Query: 67 RALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVV--------GKVGD 118
+ + E + A KVI + P+I GRVCPQE QCEG C++ G
Sbjct: 69 KKITEGD------LVGAYKVITQSDIFPSICGRVCPQERQCEGSCILYYDTVRNRKNKGL 122
Query: 119 PINIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY 178
P+ IG LE+FV D+ R GI+ E E G RVAVIGAGPAGL+CA ELAK G+
Sbjct: 123 PVAIGALEKFVGDFIRISGIEIEEEKEPPTGF-----RVAVIGAGPAGLSCAHELAKKGH 177
Query: 179 EVTIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLE 238
EV ++EAL +PGGV+ YGIP RL K I+ E+K+L+ LG++ +++G+ +T+ EL E
Sbjct: 178 EVHVYEALPKPGGVMYYGIPNARLDKSIIEWEVKRLEKLGIKFFYGYLIGKNITLQELRE 237
Query: 239 EYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIV 298
+YDA+FI+ GAG KL +PG +L G+YSA +FL R+NL KA +FP+ P+ +GKR ++
Sbjct: 238 KYDAVFIAVGAGRGKL-GLPGDHLKGVYSAIDFLMRVNLYKANEFPKKGVPVELGKRTVI 296
Query: 299 IGAGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIG 358
IG G TA+D A +A RLG E + YRR +E +AR EE H EEGVK + PVE IG
Sbjct: 297 IGGGFTAVDCAITANRLGVETHVVYRRTRETSSARQEEWDHLMEEGVKIHWLTQPVEVIG 356
Query: 359 DEEGRVKAVKFEKMKPLEERDKRGKRK--IVGTGEYITVEADTVIIAIGQTPNKILWRTT 416
+E+G V +K KM+ L E D+ G+ + V E+I +E D+VI AIGQ N I + +
Sbjct: 357 NEKGEVVGLKCIKME-LGEPDESGRPRPVPVPNSEHI-IECDSVIFAIGQRANPIAYEGS 414
Query: 417 PGLKVREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
G+K + GTI V+E T++ GVFAGGD I G V++A+ G++AAK IHEYL
Sbjct: 415 -GIKTTKWGTIEVNERYETNLEGVFAGGDVINGGDRVVVALAHGKEAAKYIHEYL 468
>pir||JC5184 glutamate synthase (GOGAT) (EC 1.4.1.-) small chain - Thiobacillus
ferrooxidans >gi|1033071|gb|AAA79783.1| (U36427)
glutamate synthase small subunit gltD [Acidithiobacillus
ferrooxidans]
Length = 465
Score = 283 bits (717), Expect = 3e-75
Identities = 174/466 (37%), Positives = 252/466 (53%), Gaps = 22/466 (4%)
Query: 12 PERSPVERVRD-FNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALR 70
P++ VE R+ F E+ + A +A+RCL C Y C CPV+ IP +++ +
Sbjct: 14 PKKLDVEERREAFREIYQSFDLGSAQLQADRCLHCGNPY--CEWKCPVHNYIPNWLQLIV 71
Query: 71 ENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVA 130
ENR + EA + N+LP I GR+CPQ+ CEG C + G + IG LERFV
Sbjct: 72 ENR------LEEAATLSHQTNTLPEICGRICPQDRLCEGACTLNATGGAVTIGNLERFVT 125
Query: 131 DYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPG 190
+ A ++ I NGKRVAV+G GPAGL CA L + G EV +F+ G
Sbjct: 126 EEALARAWQPDM-----PDILPNGKRVAVVGGGPAGLGCADILNRAGTEVVVFDRYPAVG 180
Query: 191 GVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAG 250
G+L +GIP F+L K ++ + L+ +G+ + D VGR +++ +LLE++DA+F+ G
Sbjct: 181 GLLTFGIPSFKLEKAVVARRANLLQEMGIRFQLDTEVGRDISLGKLLEDFDAVFLGMGTY 240
Query: 251 TPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIV--VGKRVIVIGAGNTAMDA 308
T K PG L G+ A +L N + P+ P + GKRV+V+G G+TAMD
Sbjct: 241 TAKTGDFPGEKLPGVLKALSYLI-ANTRHLMQLPDPTLPYISLSGKRVVVLGGGDTAMDC 299
Query: 309 ARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAV 367
R+A+R GA +V YRR +E+M EV +A+EEGV F+F PVE +GD
Sbjct: 300 LRTAIRQGARQVTCVYRRDEENMPGSRREVANAREEGVHFLFHRQPVEVVGDAASGSPG- 358
Query: 368 KFEKMKPLEERDKRGKR--KIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDG 425
+ P E D RG+R +I+ E + ++AD VIIA G P+ W + G
Sbjct: 359 RASGGDPSGEPDARGRRHPEIIPGSEQV-LDADVVIIAFGFDPSPAPWFAEHHITTDSRG 417
Query: 426 TIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
I + TS P +FAGGD RG V+ A+ +GR+AA+ I +YL
Sbjct: 418 RISTNAQFQTSNPRIFAGGDMRRGSDLVVTAVDEGRRAAQGILDYL 463
>sp|P09832|GLTD_ECOLI GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLUTAMATE SYNTHASE BETA
SUBUNIT) (NADPH-GOGAT) (GLTS BETA CHAIN)
>gi|7448188|pir||G65112 glutamate synthase (NADPH) (EC
1.4.1.13) small chain - Escherichia coli
>gi|606152|gb|AAA58015.1| (U18997) glutamate synthase,
small subunit [Escherichia coli]
>gi|1789606|gb|AAC76245.1| (AE000400) glutamate
synthase, small subunit [Escherichia coli K12]
Length = 472
Score = 283 bits (716), Expect = 3e-75
Identities = 176/475 (37%), Positives = 266/475 (55%), Gaps = 26/475 (5%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+RV P++ R +F E+ ++ A +A+RCL C Y C CPV+ IP ++
Sbjct: 12 QRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPY--CEWKCPVHNYIPNWL 69
Query: 67 RALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLE 126
+ E R + EA ++ N+LP + GRVCPQ+ CEG C + + IG +E
Sbjct: 70 KLANEGR------IFEAAELSHQTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIE 123
Query: 127 RFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEAL 186
R++ D A E G ++ G+K+ GK+VA+IGAGPAGL CA L + G + +F+
Sbjct: 124 RYINDKAFEMG-----WRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRH 178
Query: 187 HEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFIS 246
E GG+L +GIP F+L KE++ + + +G+E K + VGR V + +LL +YDA+F+
Sbjct: 179 PEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLG 238
Query: 247 TGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPE-YDTPIV--VGKRVIVIGAGN 303
G + + +G+Y+A FL N + F E D P V GKRV+V+G G+
Sbjct: 239 VGTYQSMRGGLENEDADGVYAALPFLI-ANTKQLMGFGETRDEPFVSMEGKRVVVLGGGD 297
Query: 304 TAMDAARSALRLGAE-VIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEG 362
TAMD R+++R GA+ V AYRR +E+M EV++A+EEGV+F F V P+ + G
Sbjct: 298 TAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNG 357
Query: 363 RVKAVKFEKMKPLEERDKRGKRK--IVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLK 420
+V VK + + + E D +G+R+ IV E+I V AD VI+A G P+ + W ++
Sbjct: 358 KVSGVKMVRTE-MGEPDAKGRRRAEIVAGSEHI-VPADAVIMAFGFRPHNMEWLAKHSVE 415
Query: 421 VREDGTIIV----DENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
+ G II D TS P +FAGGD +RG V+ A+ +GRKAA I +L
Sbjct: 416 LDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 470
>sp|P37127|AEGA_ECOLI AEGA PROTEIN >gi|7451584|pir||C65022 yffG protein - Escherichia
coli (strain K-12) >gi|1788811|gb|AAC75521.1| (AE000333)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 659
Score = 279 bits (706), Expect = 5e-74
Identities = 171/469 (36%), Positives = 261/469 (55%), Gaps = 22/469 (4%)
Query: 12 PERSPVE-RVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALR 70
P++ +E R F+E+ L + + A REA RCL+C E++ C CP++ IP +I ++
Sbjct: 196 PDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCG-EHSVCEWTCPLHNHIPQWIELVK 254
Query: 71 ENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVA 130
+ A+++ N+LP ITGRVCPQ+ CEG C + + IG +ER+++
Sbjct: 255 AGN------IDAAVELSHQTNTLPEITGRVCPQDRLCEGACTIRDEHGAVTIGNIERYIS 308
Query: 131 DYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPG 190
D A G +L + + KRVA+IGAGPAGL CA L + G VT+++ E G
Sbjct: 309 DQALAKGWRPDL-----SHVTKVDKRVAIIGAGPAGLACADVLTRNGVGVTVYDRHPEIG 363
Query: 191 GVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAG 250
G+L +GIP F+L K +L + + +G+ + + VG+ V++ LLE+YDA+F+ G
Sbjct: 364 GLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLLEQYDAVFVGVGTY 423
Query: 251 TPKLLKIPGINLNGIYSANEFL--TRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDA 308
+P + G+Y A FL +M + PE G V+V+G G+TAMD
Sbjct: 424 RSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDC 483
Query: 309 ARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAV 367
R+ALR GA V AYRR + +M +EV++A+EEG F F V PV +E+G V +
Sbjct: 484 VRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGI 543
Query: 368 KFEKMKPLEERDKRGKRKIVGT-GEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGT 426
+F + + L E D +G+R+ V G + AD VI+A G P+ + W + G+ V + G
Sbjct: 544 RFLRTR-LGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGR 602
Query: 427 IIVD----ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
II D T+ P +FAGGDA+RG V+ AM +GR AA+ I ++L
Sbjct: 603 IIADVESQYRYQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWL 651
>dbj|BAA16342.1| (D90875) similar to [SwissProt Accession Number P37127]~start codon
is not identified yet [Escherichia coli]
Length = 671
Score = 279 bits (706), Expect = 5e-74
Identities = 171/469 (36%), Positives = 261/469 (55%), Gaps = 22/469 (4%)
Query: 12 PERSPVE-RVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALR 70
P++ +E R F+E+ L + + A REA RCL+C E++ C CP++ IP +I ++
Sbjct: 208 PDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCG-EHSVCEWTCPLHNHIPQWIELVK 266
Query: 71 ENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVA 130
+ A+++ N+LP ITGRVCPQ+ CEG C + + IG +ER+++
Sbjct: 267 AGN------IDAAVELSHQTNTLPEITGRVCPQDRLCEGACTIRDEHGAVTIGNIERYIS 320
Query: 131 DYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPG 190
D A G +L + + KRVA+IGAGPAGL CA L + G VT+++ E G
Sbjct: 321 DQALAKGWRPDL-----SHVTKVDKRVAIIGAGPAGLACADVLTRNGVGVTVYDRHPEIG 375
Query: 191 GVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAG 250
G+L +GIP F+L K +L + + +G+ + + VG+ V++ LLE+YDA+F+ G
Sbjct: 376 GLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLLEQYDAVFVGVGTY 435
Query: 251 TPKLLKIPGINLNGIYSANEFL--TRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDA 308
+P + G+Y A FL +M + PE G V+V+G G+TAMD
Sbjct: 436 RSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDC 495
Query: 309 ARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAV 367
R+ALR GA V AYRR + +M +EV++A+EEG F F V PV +E+G V +
Sbjct: 496 VRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGI 555
Query: 368 KFEKMKPLEERDKRGKRKIVGT-GEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGT 426
+F + + L E D +G+R+ V G + AD VI+A G P+ + W + G+ V + G
Sbjct: 556 RFLRTR-LGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGR 614
Query: 427 IIVD----ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
II D T+ P +FAGGDA+RG V+ AM +GR AA+ I ++L
Sbjct: 615 IIADVESQYRYQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWL 663
>pir||G83017 glutamate synthase small chain PA5035 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|1750398|gb|AAB39260.1|
(U81261) glutamate synthase small subunit [Pseudomonas
aeruginosa] >gi|9951324|gb|AAG08420.1|AE004916_9
(AE004916) glutamate synthase small chain [Pseudomonas
aeruginosa]
Length = 477
Score = 272 bits (689), Expect = 5e-72
Identities = 171/463 (36%), Positives = 258/463 (54%), Gaps = 27/463 (5%)
Query: 18 ERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPR 77
+R R+F E++ + + A +A RCL C Y C CPV+ IP +++ + E
Sbjct: 31 QRKREFVEIHDLFKPQQAADQAHRCLGCGNPY--CEWKCPVHNFIPNWLKLVSEGN---- 84
Query: 78 KAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVADYAREHG 137
+ A ++ N+LP + GRVCPQ+ CEG C + + IG +E+++ D A G
Sbjct: 85 --ILAAAELSHQTNTLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGSVEKYITDTAFAMG 142
Query: 138 IDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGI 197
+L +K G+RVAVIGAGPAGL CA L + G +F+ E GG+L +GI
Sbjct: 143 WRPDLSK-----VKPTGRRVAVIGAGPAGLGCADVLVRNGVTPVVFDRNPEIGGLLTFGI 197
Query: 198 PEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKI 257
PEF+L K +L + + +G+E + + +G+ VT+ +LL+EYDA+F+ G T
Sbjct: 198 PEFKLEKHVLSRRREVFTGMGIEFRLNTEIGKDVTMEQLLDEYDAVFMGMGTYTYMKGGF 257
Query: 258 PGINLNGIYSANEFL-TRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLG 316
PG +L G++ A +FL +N ++ D + GKRV+V+G G+TAMD R+++R G
Sbjct: 258 PGEDLPGVHDALDFLIANVNRNLGFEKSAEDFVDMKGKRVVVLGGGDTAMDCNRTSIRQG 317
Query: 317 AE-VIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPL 375
A+ V AYRR +E+M +EV++AKEEGVKF+F P+ +G E RV+ VK + + L
Sbjct: 318 AKSVTCAYRRDEENMPGSRKEVKNAKEEGVKFLFNRQPIAIVG--EDRVEGVKVVETR-L 374
Query: 376 EERDKRGKRK---IVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDEN 432
E D RG+R I G+ E I EA V+IA G P+ W + G ++
Sbjct: 375 GEPDARGRRSPEPIPGSEEIIPAEA--VLIAFGFRPSPAPWFERFEIATDSQGRVVAPAQ 432
Query: 433 L----MTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
TS P +FAGGD +RG V+ A+ +GR AA+ I +YL
Sbjct: 433 AQFKHQTSNPKIFAGGDMVRGSDLVVTAIFEGRTAAEGILDYL 475
>gb|AAB18329.1| (U73807) formate dehydrogenase beta subunit [Moorella
thermoacetica]
Length = 707
Score = 270 bits (683), Expect = 3e-71
Identities = 176/443 (39%), Positives = 247/443 (55%), Gaps = 41/443 (9%)
Query: 50 APCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEG 109
APC+K CP ++DIP +I A+++ R E+L +I +L + GRVC CE
Sbjct: 195 APCLKRCPAHLDIPAYIDAIKDGR------YEESLAIIRQRTALAGVLGRVCVH--PCEE 246
Query: 110 VCVVGKVGDPINIGKLERFVADYAREHGIDDELLM-----------------EEIRGIKR 152
C G V +P+ I L+RFVADY + G + EE +
Sbjct: 247 NCRRGNVDEPLAIRGLKRFVADYEVKRGRRPVAVCGGNLFTGPWRPAGQAGGEETTAV-T 305
Query: 153 NGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELK 212
+GK+VA+IGAGPAGL+ A +LA GY+VTIFEAL GG+LA GIP +RLP++IL E++
Sbjct: 306 SGKKVAIIGAGPAGLSAAYQLAGRGYKVTIFEALPVAGGMLAVGIPSYRLPRDILAGEIE 365
Query: 213 KLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGIN--LNGIYSANE 270
+K LGV I + VG VT+ +L +YDA+FI+TG + + G + G +
Sbjct: 366 AIKALGVTINLNTRVGVDVTMDQLQRDYDAVFIATGLHASSRMGVAGEDEGYGGFIPGVK 425
Query: 271 FLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGA-EVIIAYRRGKED 329
FL +NL + P + GK V V+G GN AMD ARSALR GA EV + YRR + +
Sbjct: 426 FLRDLNLDRC--------PSLEGKVVAVVGGGNVAMDCARSALRRGAREVHLIYRRSRAE 477
Query: 330 MTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGT 389
M A EV+ A+ EGV + F VNP + E+G +K ++ +MK E D +R +
Sbjct: 478 MPAHATEVRDAEAEGVIYHFLVNPTALVA-EKGNIKGMQCVRMKLGEPDDSGRRRPVPVP 536
Query: 390 GEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDE-NLMTSIPGVFAGGDAIR 448
G + D V+ AIGQ + L ++V + GTI VD L TS+PGVFAGGD +
Sbjct: 537 GTEFFLPCDIVVPAIGQAAD--LSFLDGRIEVGKRGTISVDPVTLATSVPGVFAGGDIVL 594
Query: 449 GEATVILAMGDGRKAAKAIHEYL 471
G TV+ A+ G +AA +I +YL
Sbjct: 595 GARTVVEAVAQGNRAAVSIDQYL 617
>pir||G82083 glutamate synthase, small subunit VC2377 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656948|gb|AAF95520.1| (AE004308) glutamate
synthase, small subunit [Vibrio cholerae]
Length = 471
Score = 266 bits (673), Expect = 4e-70
Identities = 169/472 (35%), Positives = 257/472 (53%), Gaps = 31/472 (6%)
Query: 12 PERSPVE-RVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALR 70
P + P+ R +F E+ +T + A +A+RCL C Y C CPV+ IP +++
Sbjct: 17 PAKKPLHIRKIEFVEIYEPFTKQQATAQADRCLDCGNPY--CEWKCPVHNYIPQWLKLAN 74
Query: 71 ENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVA 130
E R + EA + NSLP + GRVCPQ+ CEG C + + IG +E+++
Sbjct: 75 EGR------ILEAADLAHQTNSLPEVCGRVCPQDRLCEGSCTLNADFGAVTIGNIEKYIT 128
Query: 131 DYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPG 190
D A E G ++ + K+VA+IGAGPAGL A L + G +F+ E G
Sbjct: 129 DTAFEMGWKPDM-----SNVVWTDKKVAIIGAGPAGLAAADILVRNGVRPVVFDRYPEIG 183
Query: 191 GVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAG 250
G+L +GIP F+L K ++ + +G+E + + VG+ +T+ +LL+EYDA+F+ G
Sbjct: 184 GLLTFGIPSFKLEKGVMENRRRIFSEMGIEFRLNVEVGQDITLQQLLDEYDAVFLGVGTY 243
Query: 251 TPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEY--DTPIV--VGKRVIVIGAGNTAM 306
+ + G+Y A FL + YK E + P + GK V+V+G G+TAM
Sbjct: 244 QYMRAGLANEDAPGVYDALPFL----ISNTYKVMELNNEAPFIDMAGKNVVVLGGGDTAM 299
Query: 307 DAARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVK 365
D R+++R GA VI AYRR +E+M EV++AKEEGV+FMF + P+ + +G+V
Sbjct: 300 DCVRTSIRQGASRVICAYRRDEENMPGSRREVKNAKEEGVEFMFNLQPLGIEVNAQGQVT 359
Query: 366 AVKFEKMKPLEERDKRGKRK--IVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVRE 423
VK K L E D G+RK V E++ + AD VI+A G P+K+ W +++ +
Sbjct: 360 GVKVVK-TALGEPDAAGRRKPEPVAGSEHV-LPADAVIMAFGFQPHKMAWLEPFDVELDQ 417
Query: 424 DGTIIVDE----NLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
G I T+ P +FAGGDA+RG V+ A+ +GRKAA+ I +YL
Sbjct: 418 WGRIKAPAKQTYQYQTTNPKIFAGGDAVRGSDLVVTAIDEGRKAAEGILDYL 469
>gb|AAG38999.1|AF192408_3 (AF192408) NADPH-dependent glutamate synthase small subunit
precursor [Azospirillum brasilense]
Length = 482
Score = 265 bits (670), Expect = 8e-70
Identities = 176/478 (36%), Positives = 261/478 (53%), Gaps = 27/478 (5%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+R+P +R ER +DF E+ ++ E A +A RC QC + C CPV+ +IP ++
Sbjct: 14 QRMPD-KRPAAERRQDFAEIYARFSDERANEQANRCSQCGVPF--CQVHCPVSNNIPDWL 70
Query: 67 RALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGK-VGDPINIGKL 125
+ E R + EA +V A N+ P I GR+CPQ+ CEG CV+ + + IG +
Sbjct: 71 KLTSEGR------LEEAYEVSQATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSV 124
Query: 126 ERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEA 185
E+++ D A + G ++ + G V VIGAGPAGL A EL GYEV +++
Sbjct: 125 EKYINDTAWDQG-----WVKPRTPSRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDR 179
Query: 186 LHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFI 245
GG+L YGIP F+L K ++ + +K L GV + VGR ++PEL ++ A+ +
Sbjct: 180 YDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELRRKHVAVLV 239
Query: 246 STGAGTPKLLKIPGINLNGIYSANEFLT---RINLMKAYKFPEYDTPIVVGKRVIVIGAG 302
+TG + +K PG L I +A ++LT +++L + E + GK V+V+G G
Sbjct: 240 ATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG 299
Query: 303 NTAMDAARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE- 360
+TAMD R+A+R GA V YRR +++M EV HA+EEGV+F++ P F GD
Sbjct: 300 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTV 359
Query: 361 EGRVKAVKFEKMKPLEERDKRGKR-KIVGTGEYITVEADTVIIAIGQTPNKILWR-TTPG 418
V+AV+ L D G++ V G TV+AD VI A+G P + P
Sbjct: 360 VTGVRAVRIH----LGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPE 415
Query: 419 LKVREDGTIIVDENL-MTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKSA 475
LKV GT++VD MT++ GVFA GD +RG + V+ A+ DGR AA+ IH Y A
Sbjct: 416 LKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKAKA 473
>pir||H82523 glutamate synthase, beta subunit XF2709 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107954|gb|AAF85506.1|AE004077_2 (AE004077)
glutamate synthase, beta subunit [Xylella fastidiosa]
Length = 494
Score = 264 bits (667), Expect = 2e-69
Identities = 171/485 (35%), Positives = 256/485 (52%), Gaps = 36/485 (7%)
Query: 12 PERSPVE--RVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRAL 69
P+R PVE D+ E+ + A +A RCL C Y C CPV+ IP +++ +
Sbjct: 17 PQRIPVELRTSGDWRELYGKFDKAEAQYQAGRCLDCGNPY--CSWKCPVHNAIPQWLQLV 74
Query: 70 RENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFV 129
+ENR + EA + A N LP + GRVCPQ+ CEG C + + G + IG +E+++
Sbjct: 75 QENR------IDEAAALCHATNPLPEVCGRVCPQDRLCEGSCTLEEFG-AVTIGAVEKYI 127
Query: 130 ADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEP 189
D A + G +L ++ G RVAV+GAGPAGL CA LA+ G + +++ +
Sbjct: 128 VDTALQQGWRPDL-----SHVQPTGWRVAVVGAGPAGLACADRLARAGVQAVVYDRYEQI 182
Query: 190 GGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGA 249
GG+L +GIP F+L K ++ K L+ +GVE + +G+ + I LLE YDA+F+ GA
Sbjct: 183 GGLLQFGIPSFKLDKAVMSTRRKVLEGMGVEFRLGVEIGKDLGIEALLEHYDAVFLGVGA 242
Query: 250 GTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFP----------EYDTPIVVGKRVIVI 299
+PG +L + A FL + + + P + P V GK V+V+
Sbjct: 243 YRYTDGGLPGQDLKNVLPALPFLVQNGRIVSGNDPYGRPIAGWEDQVQLPDVTGKSVVVL 302
Query: 300 GAGNTAMDAARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIG 358
G G+T MD RSA+RLGA +V YRR + +M EV +A+EEGV+F+F P+
Sbjct: 303 GGGDTGMDCVRSAIRLGATKVTCIYRRDEANMPGSAREVANAREEGVRFLFNRQPLSIQS 362
Query: 359 DEEGRVKAVKFEKMKPLEERDKRGKRKIVG-TGEYITVEADTVIIAIGQTPNKILWRTTP 417
+ + V + K L E D G+R V G +EAD VIIA G +P W T
Sbjct: 363 GTDKQAIGVTVVETK-LAEPDANGRRNAVPIQGTEAVLEADVVIIAFGFSPMLPEWLTAQ 421
Query: 418 GLKVREDGTIIV-------DENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEY 470
G++ +G I+V T+ P +FAGGD +RG V+ A+ +GR AA++I +
Sbjct: 422 GIQASSNGRIVVALSDTGDGLTYQTTHPKLFAGGDCVRGADLVVTAVAEGRDAAESIVRW 481
Query: 471 LSKSA 475
L +A
Sbjct: 482 LRATA 486
>emb|CAC11556.1| (AL445064) GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN related protein
[Thermoplasma acidophilum]
Length = 484
Score = 259 bits (656), Expect = 4e-68
Identities = 183/475 (38%), Positives = 262/475 (54%), Gaps = 38/475 (8%)
Query: 7 ERVPTPERSPVERVRDFNEVNL-GYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGF 65
ERV + P ERV+ F+ L YT E A+ EA RCL C C CP ++DI G+
Sbjct: 5 ERVRIKKADPDERVKTFDIEPLDNYTDEEAIAEASRCLGCNM----CSAACPASLDISGY 60
Query: 66 IRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKL 125
IR+ +P + VR ++ + PAI GRVC CE +CV+ G PI I L
Sbjct: 61 IRSTAAG--DPAQTVRIIMETL----PFPAIIGRVCTH--MCEDICVMYDGGGPIAIRHL 112
Query: 126 ERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEA 185
+R+ AD ++G E+L + R K GK+VAVIG GPAGLT A L+ G +VT+FE
Sbjct: 113 KRYAADKFDDYG---EILRPQKR--KFIGKKVAVIGGGPAGLTVAYYLSLQGVKVTLFEE 167
Query: 186 LHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFI 245
GG + GIP +RLP+ +L KE+ + GV++K + VGR ++ ++++EYDA+F+
Sbjct: 168 RPALGGFMKTGIPRYRLPQSVLDKEIGYVVSRGVDVKLNTKVGRDISFDQIMKEYDAVFL 227
Query: 246 STGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTA 305
G P++ PG + + A EFL R++ + I VG V VIG G TA
Sbjct: 228 GVGNHKPRMTGTPGSDAPNVMHATEFLERVS---------FGERIDVGDTVAVIGGGFTA 278
Query: 306 MDAARSALRLGAE-VIIAYRR------GKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIG 358
D+AR++LRLGA+ V I YRR G M A EE+ A+EE V++++ V P E++
Sbjct: 279 NDSARTSLRLGAKHVYIMYRRRDVDRPGYPSMNAD-EEMDEAEEEKVEYVWEVTPFEYV- 336
Query: 359 DEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQ-TPNKILWRTTP 417
E GRV A+K+ + ++E R K + Y T++ D VI A GQ T L
Sbjct: 337 KENGRVVAMKYWMNEMVKEGKGRAKPVPIKDKVY-TIKVDMVIEATGQETDYSFLGDYVK 395
Query: 418 GLKVREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLS 472
L++ G IVD+N MTSI GVF+GGD+ +I A+ DG A + I +YL+
Sbjct: 396 KLRLNPHGEPIVDQNGMTSIEGVFSGGDSTNPNRDLISAVRDGDIAVQGILKYLN 450
>sp|Q05756|GLTD_AZOBR GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLUTAMATE SYNTHASE BETA
SUBUNIT) (NADPH-GOGAT) (GLTS BETA CHAIN)
>gi|420793|pir||A46602 glutamate synthase (NADPH) (EC
1.4.1.13) beta chain [validated] - Azospirillum
brasilense
Length = 481
Score = 256 bits (647), Expect = 4e-67
Identities = 171/468 (36%), Positives = 256/468 (54%), Gaps = 27/468 (5%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+R+P +R ER +DF E+ ++ E A +A RC QC + C CPV+ +IP ++
Sbjct: 14 QRMPD-KRPAAERRQDFAEIYARFSDERANEQANRCSQCGVPF--CQVHCPVSNNIPDWL 70
Query: 67 RALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGK-VGDPINIGKL 125
+ E R + EA +V A N+ P I GR+CPQ+ CEG CV+ + + IG +
Sbjct: 71 KLTSEGR------LEEAYEVSQATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSV 124
Query: 126 ERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEA 185
E+++ D A + G ++ + G V VIGAGPAGL A EL GYEV +++
Sbjct: 125 EKYINDTAWDQG-----WVKPRTPSRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDR 179
Query: 186 LHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFI 245
GG+L YGIP F+L K ++ + +K L GV + VGR ++PEL ++ A+ +
Sbjct: 180 YDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELRRKHVAVLV 239
Query: 246 STGAGTPKLLKIPGINLNGIYSANEFLT---RINLMKAYKFPEYDTPIVVGKRVIVIGAG 302
+TG + +K PG L I +A ++LT +++L + E + GK V+V+G G
Sbjct: 240 ATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG 299
Query: 303 NTAMDAARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE- 360
+TAMD R+A+R GA V YRR +++M EV HA+EEGV+F++ P F GD
Sbjct: 300 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTV 359
Query: 361 EGRVKAVKFEKMKPLEERDKRGKR-KIVGTGEYITVEADTVIIAIGQTPNKILWR-TTPG 418
V+AV+ L D G++ V G TV+AD VI A+G P + P
Sbjct: 360 VTGVRAVRIH----LGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPE 415
Query: 419 LKVREDGTIIVDENL-MTSIPGVFAGGDAIRGEATVILAMGDGRKAAK 465
LKV GT++VD MT++ GVFA GD +RG + V+ A+ DGR A +
Sbjct: 416 LKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAGR 463
>sp|Q46820|YGFT_ECOLI HYPOTHETICAL 69.1 KD PROTEIN IN KDUI-LYSS INTERGENIC REGION
Length = 639
Score = 255 bits (644), Expect = 9e-67
Identities = 164/468 (35%), Positives = 243/468 (51%), Gaps = 19/468 (4%)
Query: 5 IKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPG 64
+ R + S ER F E+ G + A E++RC+ C E A C CP++ IP
Sbjct: 173 VNSRKGADKISASERKTHFGEIYCGLDPQQATYESDRCVYCA-EKANCNWHCPLHNAIPD 231
Query: 65 FIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGK 124
+IR ++E + + EA ++ +SLP I GRVCPQ+ CEG C + ++IG
Sbjct: 232 YIRLVQEGK------IIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGN 285
Query: 125 LERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
LER++ D A G ++ + ++VAVIGAGPAGL CA LA+ G +V +F+
Sbjct: 286 LERYITDTALAMG-----WRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFD 340
Query: 185 ALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIF 244
E GG+L +GIP F+L K +L + + +G++ + +GR +T +L EYDA+F
Sbjct: 341 RHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVF 400
Query: 245 ISTGAGTPKLLKIPGINLNGIYSANEFLT--RINLMKAYKFPEYDTPIVVGKRVIVIGAG 302
I G +P + G+ A FLT LM + EY V GKRV+V+G G
Sbjct: 401 IGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGG 460
Query: 303 NTAMDAARSALRL-GAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEE 361
+T MD R+++RL A V AYRR + M +EV +A+EEGV+F F V P DE+
Sbjct: 461 DTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDED 520
Query: 362 GRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKV 421
GR+ AV + E +R G + AD +I+A G + + W G+K+
Sbjct: 521 GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKL 580
Query: 422 REDGTIIVDE----NLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAK 465
+ G I + T + VFAGGDA+ G V+ AM GR+AA+
Sbjct: 581 DKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAAR 628
>pir||G65072 hypothetical protein b2887 - Escherichia coli (strain K-12)
>gi|887837|gb|AAA83068.1| (U28375) ORF_f644 [Escherichia
coli] >gi|1789253|gb|AAC75925.1| (AE000372) putative
oxidoreductase, Fe-S subunit [Escherichia coli K12]
Length = 644
Score = 255 bits (644), Expect = 9e-67
Identities = 164/468 (35%), Positives = 243/468 (51%), Gaps = 19/468 (4%)
Query: 5 IKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPG 64
+ R + S ER F E+ G + A E++RC+ C E A C CP++ IP
Sbjct: 178 VNSRKGADKISASERKTHFGEIYCGLDPQQATYESDRCVYCA-EKANCNWHCPLHNAIPD 236
Query: 65 FIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGK 124
+IR ++E + + EA ++ +SLP I GRVCPQ+ CEG C + ++IG
Sbjct: 237 YIRLVQEGK------IIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGN 290
Query: 125 LERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
LER++ D A G ++ + ++VAVIGAGPAGL CA LA+ G +V +F+
Sbjct: 291 LERYITDTALAMG-----WRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFD 345
Query: 185 ALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIF 244
E GG+L +GIP F+L K +L + + +G++ + +GR +T +L EYDA+F
Sbjct: 346 RHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVF 405
Query: 245 ISTGAGTPKLLKIPGINLNGIYSANEFLT--RINLMKAYKFPEYDTPIVVGKRVIVIGAG 302
I G +P + G+ A FLT LM + EY V GKRV+V+G G
Sbjct: 406 IGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGG 465
Query: 303 NTAMDAARSALRL-GAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEE 361
+T MD R+++RL A V AYRR + M +EV +A+EEGV+F F V P DE+
Sbjct: 466 DTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDED 525
Query: 362 GRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKV 421
GR+ AV + E +R G + AD +I+A G + + W G+K+
Sbjct: 526 GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKL 585
Query: 422 REDGTIIVDE----NLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAK 465
+ G I + T + VFAGGDA+ G V+ AM GR+AA+
Sbjct: 586 DKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAAR 633
>gb|AAD56915.1|AF180145_7 (AF180145) glutamate synthase small subunit gltS [Zymomonas
mobilis]
Length = 490
Score = 249 bits (628), Expect = 7e-65
Identities = 172/479 (35%), Positives = 265/479 (54%), Gaps = 31/479 (6%)
Query: 5 IKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPG 64
+K+ P +RS ER +DFNE+ ++ E A +A RC QC Y C CP++ +IP
Sbjct: 12 LKQAYPE-KRSAQERDKDFNEIYRSFSDEQASCQASRCSQCGVPY--CSAYCPLHNNIPD 68
Query: 65 FIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGD-PINIG 123
+++ E R +++A + A +++P I GR+CPQ+ CEG CV+ G + IG
Sbjct: 69 WLKMTAEGR------LQDAYALSSATSTMPEICGRICPQDRLCEGNCVIENSGHGAVTIG 122
Query: 124 KLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+E+++ D A + G +E ++ I G V +IG+GPAGLT A +L + GY+V ++
Sbjct: 123 SVEKYITDTAWKEG-----WVEPLQPITELGISVGIIGSGPAGLTAAEKLRQQGYQVHVY 177
Query: 184 EALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLE--EYD 241
+ GG+L Y IP FRL K+I+ + +K+L G + + R V +P L +
Sbjct: 178 DRHVRAGGLLTYCIPGFRLDKDIVARRVKRLADWGCHL--PYQFARRVKMPALKNCVTHA 235
Query: 242 AIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAY--KFPEYD--TPIVVGKRVI 297
AI I+TG + L PG LNGI A +FL N K++ K +D T GK+V+
Sbjct: 236 AILIATGVYKARGLATPGKELNGIVDALDFLISSN-RKSFGDKVEAFDNGTLDAKGKKVV 294
Query: 298 VIGAGNTAMDAARSALRLGAE-VIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEF 356
VIG G+TAMD R+A+R GAE V YRR + +M EV++A++EG +F++ P F
Sbjct: 295 VIGGGDTAMDCVRTAIRQGAESVRCLYRRDRVNMPGSAREVKNAEDEGAEFVWLSAPESF 354
Query: 357 IGDEEGRVKAVKFEKMKPLEERDKRGKRK-IVGTGEYITVEADTVIIAIGQTPNKI-LWR 414
+G + V++VK M+ L D G+R ++AD VI A+G +P +
Sbjct: 355 VGKD--HVQSVKVRGMR-LGAPDGSGRRSPEPDPARLFDMDADLVICALGFSPEDLPTLF 411
Query: 415 TTPGLKVREDGTIIVDE-NLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLS 472
P L V GT+ D L TSI GVFA GD +RG + V+ A+ DG A++ +H++L+
Sbjct: 412 NAPELSVTPWGTVEADPVTLQTSIEGVFAAGDIVRGASLVVWAIRDGLVASEQMHQWLA 470
>pir||G72281 glutamate synthase, beta subunit - Thermotoga maritima (strain
MSB8) >gi|4981770|gb|AAD36292.1|AE001778_13 (AE001778)
glutamate synthase, beta subunit [Thermotoga maritima]
Length = 618
Score = 240 bits (606), Expect = 3e-62
Identities = 168/479 (35%), Positives = 257/479 (53%), Gaps = 39/479 (8%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
ER+ P P R++ F E+ GY+ E A++EA RC++C C CP ++DIP +I
Sbjct: 165 ERIEMPVEPPEVRIKSFIEIVKGYSREQAMQEAARCVEC----GVCTYTCPEHMDIPQYI 220
Query: 67 RALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLE 126
+++ E+ + E L+ ++ N L + GRVC +CE C VG G+P+ I L+
Sbjct: 221 KSVYEDN------LEEGLRWLYRTNPLSMVCGRVCTH--RCETACSVGVRGEPVAIQWLK 272
Query: 127 RFVADYA--REHGIDDELLMEEIRGIK--RNGKRVAVIGAGPAGLTCAAELAKMGYEVTI 182
R++ D +G EI IK R GK V +IG+GPAGL A LA MGY+VTI
Sbjct: 273 RYIVDSIPLERYG--------EILDIKPERKGKSVGIIGSGPAGLAAAYFLATMGYDVTI 324
Query: 183 FEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDA 242
+E+ +PGGV+ YGIP++RLP E L K++ ++ LGV+I + V + V+ ++ + +D
Sbjct: 325 YESESKPGGVMRYGIPKYRLPDEALDKDIAFIEALGVKILLNTRVVQDVSFEDVRKRHDV 384
Query: 243 IFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAG 302
+F++TG G + +PG + + A L + +++ Y + P V +R++VIG G
Sbjct: 385 VFLATGFGLGRSTGVPGTDHPDVKQA---LPLLKMIRDYLRGDGPKP-PVPERLVVIGGG 440
Query: 303 NTAMDAARSALRLG-------AEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVE 355
N AMD +RS RL +++ EDM A +EE++ A EEG+ P+E
Sbjct: 441 NVAMDISRSMARLQFMEYGRVNVQVLSLEGCFEDMPADMEEIEEALEEGIVINPGWGPME 500
Query: 356 FIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRT 415
+ E R+K VKF+K + + + R + E I VEAD V+ AIGQ P+
Sbjct: 501 VV-IENDRIKGVKFKKCVSVFDGEGRFNPQF-DEKEQIFVEADMVVEAIGQAPDYSYLPE 558
Query: 416 TPGLKVR-EDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSK 473
K+ G I +E TS+ +FAGGD + G +I + DG AAK I YL K
Sbjct: 559 EIRSKLEFFRGRIKTNEYNQTSVEWLFAGGDIVHG-PDIIHGIADGYAAAKGIDMYLRK 616
>pir||G83590 probable oxidoreductase PA0440 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946298|gb|AAG03829.1|AE004481_5
(AE004481) probable oxidoreductase [Pseudomonas
aeruginosa]
Length = 455
Score = 239 bits (604), Expect = 5e-62
Identities = 158/443 (35%), Positives = 235/443 (52%), Gaps = 34/443 (7%)
Query: 35 ALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLP 94
A E+ RCL C APC+ CP IDIPGFIR++ + V+ A + I + N L
Sbjct: 34 AALESARCLYCYD--APCVNACPTEIDIPGFIRSIAQEN------VQGAAQKILSANILG 85
Query: 95 AITGRVCPQEDQCEGVCVVGKVGD--PINIGKLERFVADYAREHGIDDELLMEEIRGIKR 152
RVCP E C+ CV + P+ IG+L+R+ D+A G D+ +
Sbjct: 86 GSCARVCPTEILCQRACVRNNAQECAPVLIGQLQRYALDHA---GFDEH----PFKRSPA 138
Query: 153 NGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELK 212
GKR+AV+GAGPAGL+CA LA G++V +FEA + GG+ YGI ++L + R+E++
Sbjct: 139 TGKRIAVVGAGPAGLSCAHRLAMHGHDVVLFEARTKAGGLNEYGIARYKLVDDFARREVE 198
Query: 213 -KLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEF 271
L+ G+E++ +G + + L +EYDA+F+ G K L + + G+ +A ++
Sbjct: 199 FLLQIGGIELRHGQRLGDNLALGALHDEYDAVFLGIGLAASKRLGLEDEDAPGLLAATDY 258
Query: 272 LTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGA-EVIIAYRRGKEDM 330
+ + D P V R IVIGAGNTA+D A RLGA +V + YRRG E+M
Sbjct: 259 IRELRQSDDL----LDLP--VADRCIVIGAGNTAIDMAVQMSRLGARDVNLVYRRGFEEM 312
Query: 331 TARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTG 390
A E + AK V+ + + P + DE GRV+ ++F R + ++ TG
Sbjct: 313 GATGHEQEIAKASQVRLLTWARPERVLLDEHGRVRGMRF-------ARTRLENGRLGDTG 365
Query: 391 EYITVEADTVIIAIGQTPNKILWRTTPGLKVREDG-TIIVDENLMTSIPGVFAGGDAIR- 448
E+ + AD + AIGQ ++R DG I VD + TSIPG++AGGD +
Sbjct: 366 EHFELAADAIFKAIGQAFEGASLGDPLAAQLRRDGERIQVDGQMRTSIPGIYAGGDCVAL 425
Query: 449 GEATVILAMGDGRKAAKAIHEYL 471
GE + A+ G+ AA+AIH L
Sbjct: 426 GEDLTVQAVQHGKLAAEAIHAQL 448
>gb|AAB46944.1| (L34011) Fe-S center and glutamate synthase (GltD) protein
[Escherichia coli]
Length = 652
Score = 239 bits (603), Expect = 6e-62
Identities = 147/419 (35%), Positives = 229/419 (54%), Gaps = 18/419 (4%)
Query: 12 PERSPVE-RVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALR 70
P++ +E R F+E+ L + + A REA RCL+C E++ C CP++ IP +I ++
Sbjct: 196 PDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCG-EHSVCEWTCPLHNHIPQWIELVK 254
Query: 71 ENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVA 130
+ A+++ N+LP ITGRVCPQ+ CEG C + + IG +ER+++
Sbjct: 255 AGN------IDAAVELSHQTNTLPEITGRVCPQDRLCEGACTIRDEHGAVTIGNIERYIS 308
Query: 131 DYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPG 190
D A G +L + + KRVA+IGAGPAGL CA L + G VT+++ E G
Sbjct: 309 DQALAKGWRPDL-----SHVTKVDKRVAIIGAGPAGLACADVLTRNGVGVTVYDRHPEIG 363
Query: 191 GVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAG 250
G+L +GIP F+L K +L + + +G+ + + VG+ V++ LLE+YDA+F+ G
Sbjct: 364 GLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLLEQYDAVFVGVGTY 423
Query: 251 TPKLLKIPGINLNGIYSANEFL--TRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDA 308
+P + G+Y A FL +M + PE G V+V+G G+TAMD
Sbjct: 424 RSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDC 483
Query: 309 ARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAV 367
R+A R GA V AYRR + +M +E ++A+EEG F F V PV +E+G V +
Sbjct: 484 VRTARRHGASNVTCAYRRDEANMPGSKKEAKNAREEGANFEFNVQPVALELNEQGHVCGI 543
Query: 368 KFEKMKPLEERDKRGKRKIVGT-GEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDG 425
+F + + L E D +G+R+ V G + AD VI+A G P+ + W + G+ V + G
Sbjct: 544 RFLRTR-LGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWG 601
>gb|AAD18034.1| (AF119099) glutamate synthase small subunit [Pseudomonas
fluorescens]
Length = 437
Score = 238 bits (602), Expect = 8e-62
Identities = 148/419 (35%), Positives = 231/419 (54%), Gaps = 23/419 (5%)
Query: 18 ERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPR 77
+R ++F E+ + + + +A RCL C Y C CPV+ IP +++ + E
Sbjct: 26 QRKKEFVEIYEPFKPQQSADQAHRCLGCGNPY--CEWKCPVHNFIPNWLKLVAEGN---- 79
Query: 78 KAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVADYAREHG 137
+ +A ++ N+LP + GRVCPQ+ CEG C + + IG +E+++ D A G
Sbjct: 80 --ILQAAELSHQTNTLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGSVEKYITDTAFAMG 137
Query: 138 IDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGI 197
++ +K GKRVA+IGAGPAGL CA L + G +F+ E GG+L +GI
Sbjct: 138 -----WRPDMSKVKPTGKRVAIIGAGPAGLGCADVLVRGGVTPVVFDKNPEIGGLLTFGI 192
Query: 198 PEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKI 257
PEF+L K +L + +G+E + + VG+ VT+ +LLEEYDA+F+ G T
Sbjct: 193 PEFKLEKTVLSNRREVFTGMGIEFRLNTEVGKDVTMEQLLEEYDAVFMGMGTYTYMKGGF 252
Query: 258 PGINLNGIYSANEFL-TRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLG 316
G +L G+Y A +FL +N ++ D + GK+V+V+G G+TAMD R+++R G
Sbjct: 253 AGEDLPGVYDALDFLIANVNRNLGFEKSPEDFVDMKGKKVVVLGGGDTAMDCNRTSIRQG 312
Query: 317 AE-VIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPL 375
A+ V AYRR + +M +EV++AKEEGVKF++ P+ +G E +V+ VK + + L
Sbjct: 313 AKSVTCAYRRDEANMPGSRKEVKNAKEEGVKFLYNRQPIAIVG--EDKVEGVKVVETR-L 369
Query: 376 EERDKRGKRK---IVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDE 431
E D RG+R I G+ E I AD V+IA G P+ W ++ G ++ E
Sbjct: 370 GEPDARGRRSPEPIPGSEEII--PADAVVIAFGFRPSPAPWFEQFSIQTDSQGRVVAPE 426
>pir||B29617 glutamate synthase (NADPH) (EC 1.4.1.13) small chain - Escherichia
coli >gi|146209|gb|AAA23905.1| (M18747) glutamate
synthase small subunit [Escherichia coli]
Length = 471
Score = 230 bits (580), Expect = 3e-59
Identities = 156/475 (32%), Positives = 242/475 (50%), Gaps = 27/475 (5%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+RV P++ R +F E+ ++ R + Y C CPV+ IP ++
Sbjct: 12 QRVDPPKKPLKIRKIEFVEIYEPFSEARPKRRLTAACRAANPY--CEWKCPVHNYIPNWL 69
Query: 67 RALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLE 126
+ E R + EA ++ N+LP + GRVCPQ+ CEG C + + IG ++
Sbjct: 70 KLANEGR------IFEAAELSHQTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIK 123
Query: 127 RFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEAL 186
R++ D A E G ++ G+K+ GK+VA+IGAGPAGL CA L + G + F+
Sbjct: 124 RYINDKAFEMG-----WRPDMSGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVCFDRH 178
Query: 187 HEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFIS 246
E GG+L +GIP F+L KE++ + + +G+E K + VGR V + +LL +YDA+F+
Sbjct: 179 PEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLG 238
Query: 247 TGAGTPKLLKIPGINLNGIYS--ANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNT 304
G + + +G + T +LM + + + GKRV+V+G G+T
Sbjct: 239 VGTYQSMRGGLENEDADGCTQRCRSSSPTPNSLMGFGETRDEPFVSMEGKRVVVLGGGDT 298
Query: 305 AMDAARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGR 363
AMD R+++R GA +V AYRR +E+M EV++A+EEGV+F F V P+ + G+
Sbjct: 299 AMDCVRTSVRQGANDVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGK 358
Query: 364 VKAVKF---EKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLK 420
V VK E +P + RG R T Y T + P+ + W ++
Sbjct: 359 VSGVKMVRTEMGEPDAKASPRGDRCRFRT--YRTGRCGD--HGVWFRPHNMEWLAKHSVE 414
Query: 421 VREDGTIIV----DENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
+ G II D TS P +FAGGD +RG V+ A+ +GRKAA I +L
Sbjct: 415 LDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 469
>pir||G70655 probable small subunit of NADH-dependent glutamate synthase -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781098|emb|CAB06232.1| (Z83864) gltD [Mycobacterium
tuberculosis]
Length = 488
Score = 224 bits (564), Expect = 2e-57
Identities = 160/481 (33%), Positives = 248/481 (51%), Gaps = 39/481 (8%)
Query: 12 PERSPVE-RVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALR 70
P+R PV R+RD+ EV + E ++A RC+ C + C GCP+ IP + +R
Sbjct: 16 PKRRPVPLRLRDWREVYEEFDNESLRQQATRCMDCGIPF--CHNGCPLGNLIPEWNDLVR 73
Query: 71 ENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVA 130
R R+A++ + A N+ P TGR+CP CE CV+G DP+ I ++E +
Sbjct: 74 RGR------WRDAIERLHATNNFPDFTGRLCPAP--CEPACVLGINQDPVTIKQIELEII 125
Query: 131 DYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPG 190
D A + G ++ K G+ VAV+G+GPAGL A +L + G+ VT+FE G
Sbjct: 126 DKAFDEG-----WVQPRPPRKLTGQTVAVVGSGPAGLAAAQQLTRAGHTVTVFEREDRIG 180
Query: 191 GVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAG 250
G+L YGIPEF++ K L + L +++ G E + VG ++ +L ++DA+ ++ GA
Sbjct: 181 GLLRYGIPEFKMEKRHLDRRLDQMRSEGTEFRPGVNVGVDISAEKLRADFDAVVLAGGAT 240
Query: 251 TPKLLKIPGINLNGIYSANEFLTRINLMKAYK--FPEYDTPIVV--GKRVIVIGAGNTAM 306
+ L IPG L G++ A EFL N ++ E P + GK+V++IG G+T
Sbjct: 241 AWRELPIPGRELEGVHQAMEFLPWANRVQEGDDVLDEDGQPPITAKGKKVVIIGGGDTGA 300
Query: 307 DAARSALRLGAEVIIAYRRGKEDMTARIE-----------EVQHAKEEGVKFMFFVNPVE 355
D + R GA + + AR E V A EEG + +F VN
Sbjct: 301 DCLGTVHRQGAIAVHQFEIMPRPPDARAESTPWPTYPLMYRVSAAHEEGGERVFSVNTEA 360
Query: 356 FIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQT-PNKILWR 414
F+G +GRV A++ ++ L+ GK V G +EAD V++A+G P +
Sbjct: 361 FVG-TDGRVSALRAHEVTMLD-----GKFVKV-EGSDFELEADLVLLAMGFVGPERAGLL 413
Query: 415 TTPGLKVREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKS 474
T G+K E G + ++ TS+PGVF GD RG++ ++ A+ +GR AA A+ YL S
Sbjct: 414 TDLGVKFTERGNVARGDDFDTSVPGVFVAGDMGRGQSLIVWAIAEGRAAAAAVDRYLMGS 473
Query: 475 A 475
+
Sbjct: 474 S 474
>pir||T34868 probable glutamate synthase small chain - Streptomyces coelicolor
>gi|5738513|emb|CAB52860.1| (AL109849) putative
glutamate synthase small subunit [Streptomyces
coelicolor A3(2)]
Length = 487
Score = 219 bits (552), Expect = 6e-56
Identities = 154/470 (32%), Positives = 242/470 (50%), Gaps = 37/470 (7%)
Query: 18 ERVRDFNEVNL-GYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNP 76
ERV+D+NEV + G + ++A RC+ C + C GCP+ IP + N
Sbjct: 22 ERVKDWNEVYVPGSLLPIISKQASRCMDCGIPF--CHNGCPLGNLIPEW------NDYAY 73
Query: 77 RKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVADYAREH 136
R+ A + + A N+ P TGR+CP CE CV+G P+ I +E + D A E
Sbjct: 74 REDWSAASERLHATNNFPEFTGRLCPAP--CESACVLGINQPPVTIKNVEVSIIDKAWET 131
Query: 137 GIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYG 196
G + E + +GK VAVIG+GPAGL A +L + G+ V ++E GG+L YG
Sbjct: 132 GDVAPRIPERL-----SGKTVAVIGSGPAGLAAAQQLTRAGHTVAVYERADRVGGLLRYG 186
Query: 197 IPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLK 256
IPEF++ K + + +++++ G +T +GR + +L + YDA+ I+ G+ T + L
Sbjct: 187 IPEFKMEKRHINRRIEQMRAEGTRFRTGVEIGRDLKATDLKKRYDAVVIAAGSTTARDLP 246
Query: 257 IPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVV--GKRVIVIGAGNTAMDAARSALR 314
+PG LNGI+ A E+L N ++ +Y P + GK V+VIG G+T D +A R
Sbjct: 247 VPGRELNGIHQAMEYLPLANKVQE---GDYVAPPITAEGKHVVVIGGGDTGADCVGTAHR 303
Query: 315 LGA----EVIIAYRRGKEDMTAR--------IEEVQHAKEEGVKFMFFVNPVEFIGDEEG 362
GA ++ I R G+E R + +V A EEG + ++ V+ F GDE+G
Sbjct: 304 QGAASVTQLEIMPRPGEERDAVRQPWPTFPMLYKVTSAHEEGGERVYAVSTTHFEGDEDG 363
Query: 363 RVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVR 422
V++ M +E D + K GT I + T+ + T GL++
Sbjct: 364 N---VQWLHMSEVEFVDGKLTSK-PGTERKIPAQLVTLAMGFTGTDKDNGLVDQFGLELD 419
Query: 423 EDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLS 472
E G I D + T++PGVF GDA RG++ ++ A+ +GR AA+ +L+
Sbjct: 420 ERGNIARDADFQTNVPGVFVAGDAGRGQSLIVWAIAEGRSAARGADRFLT 469
>pir||JE0142 glutamate synthase (EC 1.4.1.-) small chain - Rhodobacter
sphaeroides
Length = 413
Score = 219 bits (551), Expect = 8e-56
Identities = 140/387 (36%), Positives = 219/387 (56%), Gaps = 17/387 (4%)
Query: 96 ITGRVCPQEDQCEGVCVVGKVGD-PINIGKLERFVADYAREHGIDDELLMEEIRGIKRNG 154
I GR+CPQ+ +CEG CV+ + G + IG +E+++ D A E+G + +
Sbjct: 32 ICGRICPQDRKCEGNCVIEQSGHGTVTIGAVEKYITDTAWENG-----WVVPGKPAYERS 86
Query: 155 KRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELKKL 214
+ V +IGAGP GL A L + G +VT+++ GG+L YGIP F+L K+++ + +++L
Sbjct: 87 ESVGIIGAGPGGLAAADALRRAGLQVTVYDRYDRAGGLLTYGIPGFKLEKDVVARRVEQL 146
Query: 215 KFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLTR 274
+ GV+ + VG ++ + ++DA+ I+TG + L PG+ G+ A +LT
Sbjct: 147 EQAGVQFVLNCNVGEDLSFDAIRGQHDAVLIATGVYKQRDLAAPGVGSAGVVQALSYLTA 206
Query: 275 INLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGA-EVIIAYRRGKEDMTAR 333
N + D GKRV+VIG G+TAMD R+A+R GA V YRR + +M
Sbjct: 207 SNRRSFGDEVDDDGLDASGKRVVVIGGGDTAMDCVRTAIRQGATSVKCLYRRDRANMPGS 266
Query: 334 IEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKR--KIVGTGE 391
EV +A+EEGV+F++ P FI + V+ V +KM+ L E D G++ +I+ +
Sbjct: 267 QREVANAEEEGVEFVWLSAPRGFIAGD--AVEGVIVQKMR-LGEPDATGRQMPEIIEGAD 323
Query: 392 YITVEADTVIIAIGQTPNKI--LWRTTPGLKVREDGTIIVD-ENLMTSIPGVFAGGDAIR 448
Y+ AD I+A+G P + LW P L V GTI D TS+PGV+A GD +R
Sbjct: 324 YVE-PADLAIMALGFEPEDLPTLW-GVPDLTVTRWGTIKADFRTHATSLPGVYAVGDIVR 381
Query: 449 GEATVILAMGDGRKAAKAIHEYLSKSA 475
G + V+ A+ DGR AA++I +YL++ A
Sbjct: 382 GASLVVWAIRDGRDAAQSILDYLAQPA 408
>emb|CAA73084.1| (Y12481) glutamine--pyruvate aminotransferase [Rhodobacter
sphaeroides]
Length = 413
Score = 218 bits (550), Expect = 1e-55
Identities = 144/418 (34%), Positives = 228/418 (54%), Gaps = 25/418 (5%)
Query: 65 FIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGD-PINIG 123
F++ RE + +++R I GR+CPQ+ CEG CV+ + G + IG
Sbjct: 9 FVKMARETPEKRPRSLRS--------QDFHEICGRICPQDRLCEGNCVIEQSGHGTVTIG 60
Query: 124 KLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+E+++ D A E+G + + + V +IGAGP GL A L + G +VT++
Sbjct: 61 AVEKYITDTAWENG-----WVVPGKPAYERSESVGIIGAGPGGLAAADALRRAGLQVTVY 115
Query: 184 EALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAI 243
+ GG+L YGIP F+L K+++ + +++L+ GV+ + VG ++ + ++DA+
Sbjct: 116 DRYDRAGGLLTYGIPGFKLEKDVVARRVEQLEQAGVQFVLNCNVGEDLSFDAIRGQHDAV 175
Query: 244 FISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGN 303
I+TG + L PG+ G+ A +LT N + D GKRV+VIG G+
Sbjct: 176 LIATGVYKQRDLAAPGVGSAGVVQALSYLTASNRRSFGDEVDDDGLDASGKRVVVIGGGD 235
Query: 304 TAMDAARSALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEG 362
TAMD R+A+R GA V YRR + +M EV +A+EEGV+F++ P FI +
Sbjct: 236 TAMDCVRTAIRQGATSVKCLYRRDRANMPGSQREVANAEEEGVEFVWLSAPRGFIAGD-- 293
Query: 363 RVKAVKFEKMKPLEERDKRGKR--KIVGTGEYITVEADTVIIAIGQTPNKI--LWRTTPG 418
V+ V +KM+ L E D G++ +I+ +Y+ AD I+A+G P + LW P
Sbjct: 294 AVEGVIVQKMR-LGEPDATGRQMPEIIEGADYVE-PADLAIMALGFEPEDLPTLW-GVPD 350
Query: 419 LKVREDGTIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKSA 475
L V GTI D TS+PGV+A GD +RG + V+ A+ DGR AA++I +YL++ A
Sbjct: 351 LTVTRWGTIKADFRTHATSLPGVYAVGDIVRGASLVVWAIRDGRDAAQSILDYLAQPA 408
>gb|AAC17982.1| (AF031406) NADPH dependent glutamate synthase small subunit
homolog838 [Rhodobacter capsulatus]
Length = 443
Score = 213 bits (537), Expect = 3e-54
Identities = 154/437 (35%), Positives = 218/437 (49%), Gaps = 40/437 (9%)
Query: 39 AERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITG 98
A RC C + APC CP +ID+P FIR + P A R L N + +
Sbjct: 40 AARCYFCAE--APCTTACPSDIDVPLFIRQILTG--TPEAAARTILSQ----NIMGGMCA 91
Query: 99 RVCPQEDQCEGVCV-VGKVGDPINIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRV 157
RVCP E CEG CV G P+ IG L+RF D + G+ R K V
Sbjct: 92 RVCPTETLCEGACVREAAEGMPVEIGALQRFATDRLQAAGV------HPFTRAPRTEKSV 145
Query: 158 AVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELK-KLKF 216
AV+GAGPAGL CA LA +G+EVT+++A +PGG+ YGI ++ P +E+ L+
Sbjct: 146 AVVGAGPAGLACAHRLAMLGHEVTVYDARLKPGGLNEYGIAAYKAPGGFAAREVAWLLQI 205
Query: 217 LGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRIN 276
G+ + + +GR ++ +LL E+DA+F+ G L IPG A EF+ +
Sbjct: 206 GGIAVLENWKLGRNGSVADLLAEHDAVFLGMGLAGVNALTIPG--AEHATPATEFIAHLR 263
Query: 277 LMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEVI-IAYRRGKEDMTARIE 335
+ VG+RV+VIG G TA+DAA A LGAE I YRR + +M A
Sbjct: 264 QAGDL------ATVPVGRRVVVIGGGMTAVDAAVQAKLLGAETASIVYRRSQAEMPASAH 317
Query: 336 EVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITV 395
E +HA++ GV+ + PV D++G V+F R + K+V + + +
Sbjct: 318 EQEHAQKNGVRIVPNAAPVAIRKDDQG--YEVEF-------ARTETQGGKLVQLDDTLRI 368
Query: 396 EADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFAGGD-AIRGEATVI 454
+AD + AIGQT L GL + G I +D T + V+AGGD A GE +
Sbjct: 369 KADQIFTAIGQT----LGPVPEGLTI-TGGKIEIDAQGRTGMAHVWAGGDCATGGEDLTV 423
Query: 455 LAMGDGRKAAKAIHEYL 471
A+ GR AA+ IH +L
Sbjct: 424 TAVAQGRDAAEDIHAFL 440
>dbj|BAA35120.1| (AB008845) NADH dependent Glutamate Synthase [Oryza sativa]
Length = 2166
Score = 212 bits (533), Expect = 1e-53
Identities = 162/496 (32%), Positives = 251/496 (49%), Gaps = 45/496 (9%)
Query: 7 ERVPTPERSPVERVRDFNEVNL-GYTWELALREAERCLQCPKEYA---PCIKGCPVNIDI 62
ER R P ERV+D+ EV + L ++ RC+ C + GCP+ I
Sbjct: 1667 ERESISYRDPNERVKDWKEVAIESVPGPLLNTQSARCMDCGTPFCHQESSGAGCPLGNKI 1726
Query: 63 PGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINI 122
P F + +NR REAL + N+ P TGRVCP CEG CV+G + +P++I
Sbjct: 1727 PEFNELVHQNR------WREALDRLLETNNFPEFTGRVCPAP--CEGSCVLGIIENPVSI 1778
Query: 123 GKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTI 182
+E + D E G M ++R GK+VA+IG+GPAGL A +L KMG+ VT+
Sbjct: 1779 KSIECAIIDKGFEEG-----WMVPRPPLQRTGKKVAIIGSGPAGLAAADQLNKMGHFVTV 1833
Query: 183 FEALHEPGGVLAYGIPEFRLPK-EILRKELKKLKFLGVEIKTDHIVGR--TVTIPELLEE 239
FE GG++ YG+P + K EI+++ + + G+ + VG +I L E
Sbjct: 1834 FERADRIGGLMMYGVPNMKTDKIEIVQRRVNLMAEEGITFVVNANVGSDPLYSIERLRSE 1893
Query: 240 YDAIFISTGAGTPKLLKIPGINLNGIYSANEFL---TRINLMKAYKFPEYDTPIVVGKRV 296
DA+ ++ GA P+ L IPG L+G++ A EFL T+ L + Y + GK+V
Sbjct: 1894 NDAVILACGATKPRDLGIPGRELSGVHFAMEFLHANTKSLLDSNLEDGRYIS--AKGKKV 1951
Query: 297 IVIGAGNTAMDAARSALRLGAEVII--------AYRRGKED---MTARIEEVQHAKEE-G 344
+VIG G+T D +++R G I+ +R ++ RI V + +E
Sbjct: 1952 VVIGGGDTGTDCIGTSIRHGCTSIVNLELLTKPPSKRAADNPWPQWPRIFRVDYGHQEAS 2011
Query: 345 VKF-----MFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADT 399
KF + V FIGDE G VKA++ ++K + + ++I G+ E T+EAD
Sbjct: 2012 SKFGNDPRTYEVLTKRFIGDENGNVKALEVVRVKWEKVDGRFQLKEIEGSNE--TIEADL 2069
Query: 400 VIIAIGQTPNKILWRTTPGLKVREDGTIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMG 458
V++A+G + GL+ N TS+ G+FA GD RG++ V+ A+
Sbjct: 2070 VLLAMGFLGPEATIAEKLGLEKDNRSNFKAQFGNFATSVDGIFAAGDCRRGQSLVVWAIT 2129
Query: 459 DGRKAAKAIHEYLSKS 474
+GR+AA A+ +YLS++
Sbjct: 2130 EGRQAAAAVDKYLSRN 2145
>pir||A64983 hypothetical protein b2146 - Escherichia coli (strain K-12)
>gi|1788468|gb|AAC75207.1| (AE000303) putative
oxidoreductase [Escherichia coli K12]
Length = 412
Score = 210 bits (528), Expect = 4e-53
Identities = 147/450 (32%), Positives = 228/450 (50%), Gaps = 53/450 (11%)
Query: 24 NEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALR-ENRDNPRKAVRE 82
+E+ +T LA++EA RCL C APC + CP D FIR++ N + +RE
Sbjct: 8 DELTPAFTSLLAIKEASRCLLCHD--APCSQACPAQTDPGKFIRSIYFRNFKGAAETIRE 65
Query: 83 ALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVADYAREHGIDDEL 142
N+L A+ RVCP E C+ C V PI+IG+L+RFV D+ ++ G+ E+
Sbjct: 66 N-------NALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTGM--EI 116
Query: 143 LMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRL 202
G K GK VA+IGAGPAGL + L GY+VTI+E PGG L GIP+FRL
Sbjct: 117 YQP---GTKTLGK-VAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGGWLRNGIPQFRL 172
Query: 203 PKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINL 262
P+ +L E+ +++ +GV IK ++ VG T+T+ +L E A+ ++ G + +P
Sbjct: 173 PQSVLDAEIARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVGLSSGS--GLPLFEH 230
Query: 263 NGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEVIIA 322
+ + A +FL R + I + + ++IG G+ AMD A + LG + +
Sbjct: 231 SDVEIAVDFLQRAR--------QAQGDISIPQSALIIGGGDVAMDVASTLKVLGCQAVTC 282
Query: 323 YRRGK-EDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKR 381
R + ++ A +E A+E GV + PV G++ V F+ ++ E
Sbjct: 283 VAREELDEFPASEKEFTSARELGVSIIDGFTPVAVEGNK------VTFKHVRLSGE---- 332
Query: 382 GKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVF 441
+T+ AD +I+A+GQ R ++ I +N T P VF
Sbjct: 333 -----------LTMAADKIILAVGQHA-----RLDAFAELEPQRNTIKTQNYQTRDPQVF 376
Query: 442 AGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
A GD + G+ TV+ A+ G++AA+AIH YL
Sbjct: 377 AAGDIVEGDKTVVYAVKTGKEAAEAIHHYL 406
>sp|Q28007|DPYD_BOVIN DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] (DPD) (DIHYDROURACIL
DEHYDROGENASE) (DIHYDROTHYMINE DEHYDROGENASE)
>gi|677951|gb|AAB40985.1| (U20981) dihydropyrimidine
dehydrogenase [Bos taurus]
Length = 1025
Score = 208 bits (525), Expect = 8e-53
Identities = 157/454 (34%), Positives = 246/454 (53%), Gaps = 35/454 (7%)
Query: 35 ALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLP 94
ALREA RCL+C APC K CP N+DI FI ++ K A K+I++ N L
Sbjct: 72 ALREAMRCLKCAD--APCQKSCPTNLDIKSFITSISN------KNYYGAAKMIFSDNPLG 123
Query: 95 AITGRVCPQEDQCEGVCVVGKVGD-PINIGKLERFVADYAREHGID---DELLMEEIRGI 150
G VCP D C G C + + PINIG L+++ + + I + L +
Sbjct: 124 LTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQYATEVFKAMNIPQIRNPSLPPPEKMP 183
Query: 151 KRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEFRLPKEILRK 209
+ ++A++GAGPA ++CA+ LA++GY ++TIFE GG+ IP+FRLP +++
Sbjct: 184 EAYSAKIALLGAGPASISCASFLARLGYNDITIFEKQEYVGGISTSEIPQFRLPYDVVNF 243
Query: 210 ELKKLKFLGVEIKTDHIVGRTVTIPELL------EEYDAIFISTGAGTPKLLKI-PGINL 262
E++ +K LGV+I I G+++++ ++ E Y A FI G PK I G+
Sbjct: 244 EIELMKDLGVKI----ICGKSLSVNDITLSTLKEEGYKAAFIGIGLPEPKKDHIFQGLTQ 299
Query: 263 N-GIYSANEFLTRINLMKAYKFPEYDTPIV-VGKRVIVIGAGNTAMDAARSALRLGA-EV 319
+ G Y++ +FL + +P++ + VIV+GAG+TA D A SALR GA V
Sbjct: 300 DQGFYTSKDFLPLVAKSSKAGMCACHSPLLSIRGTVIVLGAGDTAFDCATSALRCGARRV 359
Query: 320 IIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERD 379
I +R+G ++ A EEV+ A+EE +F+ F++P + I + GR+ A++F + E+D
Sbjct: 360 FIVFRKGFVNIRAVPEEVELAREEKCEFLPFLSPRKVI-VKGGRIVAMQFVR----TEQD 414
Query: 380 KRGKRKIVGTGEYITVEADTVIIAIGQ--TPNKILWRTTPGLKVREDGTIIVDENLMTSI 437
+ GK G + ++AD VI A G + K+ +P R D + E + TS
Sbjct: 415 ETGKWNEDG-DQIACLKADVVISAFGSVLSDPKVKEALSPIKFNRWDLPEVDPETMQTSE 473
Query: 438 PGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
P VFAGGD + T + A+ DG++A+ IH Y+
Sbjct: 474 PWVFAGGDVVGIANTTVEAVNDGKQASWYIHRYI 507
>sp|Q28943|DPYD_PIG DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] PRECURSOR (DPD)
(DIHYDROURACIL DEHYDROGENASE) (DIHYDROTHYMINE
DEHYDROGENASE) >gi|1082961|pir||B54718 dihydropyrimidine
dehydrogenase (NADP+) (EC 1.3.1.2) - pig
>gi|558307|gb|AAA57475.1| (U09179) dihydropyrimidine
dehydrogenase [Sus scrofa]
Length = 1025
Score = 205 bits (516), Expect = 1e-51
Identities = 158/454 (34%), Positives = 246/454 (53%), Gaps = 35/454 (7%)
Query: 35 ALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLP 94
ALREA RCL+C APC K CP ++DI FI ++ K A K+I++ N L
Sbjct: 72 ALREAMRCLKCAD--APCQKSCPTHLDIKSFITSISN------KNYYGAAKMIFSDNPLG 123
Query: 95 AITGRVCPQEDQCEGVCVVGKVGD-PINIGKLERFVADYAREHGID---DELLMEEIRGI 150
G VCP D C G C + + INIG L++F ++ + I + L + +
Sbjct: 124 LTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMP 183
Query: 151 KRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEFRLPKEILRK 209
+ ++A++GAGPA ++CA+ LA++GY ++TIFE GG+ IP+FRLP +++
Sbjct: 184 EAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNF 243
Query: 210 ELKKLKFLGVEIKTDHIVGRT-----VTIPELLEE-YDAIFISTGAGTPKLLKI-PGINL 262
E++ +K LGV+I I G++ +T+ L EE Y A FI G PK I G+
Sbjct: 244 EIELMKDLGVKI----ICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQ 299
Query: 263 N-GIYSANEFLTRINLMKAYKFPEYDTPI-VVGKRVIVIGAGNTAMDAARSALRLGA-EV 319
+ G Y++ +FL + +P+ + VIV+GAG+TA D A SALR GA V
Sbjct: 300 DQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRV 359
Query: 320 IIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERD 379
+ +R+G ++ A EEV+ AKEE +F+ F++P + I + GR+ AV+F + E+D
Sbjct: 360 FLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVI-VKGGRIVAVQFVR----TEQD 414
Query: 380 KRGKRKIVGTGEYITVEADTVIIAIGQT--PNKILWRTTPGLKVREDGTIIVDENLMTSI 437
+ GK + + ++AD VI A G K+ +P R D + E + TS
Sbjct: 415 ETGKWN-EDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSE 473
Query: 438 PGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
P VFAGGD + T + ++ DG++A+ IH+Y+
Sbjct: 474 PWVFAGGDIVGMANTTVESVNDGKQASWYIHKYI 507
>pir||H69634 glutamate synthase (small subunit) gltB - Bacillus subtilis
>gi|2634227|emb|CAB13727.1| (Z99113) glutamate synthase
(small subunit) [Bacillus subtilis]
>gi|2634238|emb|CAB13737.1| (Z99114) glutamate synthase
(small subunit) [Bacillus subtilis]
Length = 493
Score = 203 bits (511), Expect = 4e-51
Identities = 152/501 (30%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 5 IKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPG 64
IK P ER P+ R++D+ E + ++ E + R+ RC+ C + C + DI G
Sbjct: 10 IKREKPA-ERDPLTRLKDWKEYSAPFSEEASKRQGARCMDCGTPF------CQIGADING 62
Query: 65 FIRALRENRDNP-------RKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVG 117
F P R +EAL+ + N+ P TGRVCP CEG C +
Sbjct: 63 FTSGCPIYNLIPEWNDLVYRGRWKEALERLLKTNNFPEFTGRVCPAP--CEGSCTLAISD 120
Query: 118 DPINIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMG 177
++I +ER + D E+G + + KR GK+VA++G+GPAGL A +L + G
Sbjct: 121 PAVSIKNIERTIIDKGFENGWIQPRIPK-----KRTGKKVAIVGSGPAGLASADQLNQAG 175
Query: 178 YEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELL 237
+ VT+FE GG+L YGIP +L K I+ + +K L G++ T+ +G +T EL
Sbjct: 176 HSVTVFERADRAGGLLTYGIPNMKLEKGIVERRIKLLTQEGIDFVTNTEIGVDITADELK 235
Query: 238 EEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAY---KFPEYDTPIVVGK 294
E++DA+ + TGA + L I G + G++ A ++LT K+Y F + GK
Sbjct: 236 EQFDAVILCTGAQKQRDLLIEGRDSKGVHYAMDYLTLAT--KSYLDSNFKDKQFIDAKGK 293
Query: 295 RVIVIGAGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEE-----------VQHAKEE 343
VIVIG G+T D +ALR A+ + + + + AR + +++A EE
Sbjct: 294 DVIVIGGGDTGADCVATALRQKAKSVHQFGKHPKLPPARTNDNMWPEQPHVFTLEYAYEE 353
Query: 344 -GVKF-----MFFVNPVEFIGDEEGRVK---AVKFEKMKPLEERDKRGKRKIVGTGEYIT 394
KF + + + + D+ G++K ++ EK+K E K R++ GT +
Sbjct: 354 REAKFGRDPREYSIQTTKMVADKNGKLKELHTIQMEKVK--NEHGKYEFRELPGTEK--V 409
Query: 395 VEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFAGGDAIRGEATVI 454
A V IAIG + G+ + + T+I GVFA GDA RG++ ++
Sbjct: 410 WPAQLVFIAIGFEGTEQPLLKQFGVNSVNNKISAAYGDYQTNIDGVFAAGDARRGQSLIV 469
Query: 455 LAMGDGRKAAKAIHEYLSKSA 475
A+ +GR+ A+ + YL S+
Sbjct: 470 WAINEGREVAREVDRYLMGSS 490
>dbj|BAA33218.1| (D85035) dihydropyrimidine dehydrogenase [Rattus norvegicus]
Length = 1025
Score = 203 bits (511), Expect = 4e-51
Identities = 157/455 (34%), Positives = 247/455 (53%), Gaps = 37/455 (8%)
Query: 35 ALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLP 94
ALREA RCL+C APC K CP ++DI FI ++ K A K+I++ N L
Sbjct: 72 ALREAVRCLKCAD--APCQKSCPTSLDIKSFITSIAN------KNYYGAAKLIFSDNPLG 123
Query: 95 AITGRVCPQEDQCEGVCVVGKVGD-PINIGKLERFVADYAREHGIDD---ELLMEEIRGI 150
G VCP D C G C + + PINIG L++F + + I LL
Sbjct: 124 LTCGMVCPTSDLCVGGCNLHATEEGPINIGGLQQFATEVFKAMNIPQIRSPLLPPPEHMP 183
Query: 151 KRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEFRLPKEILRK 209
+ ++A+ GAGPA ++CA+ LA++GY ++TIFE GG+ IP+FRLP +++
Sbjct: 184 EAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNF 243
Query: 210 ELKKLKFLGVEIKTDHIVGRTVTIPEL----LEE--YDAIFISTGAGTPKLLKI-PGIN- 261
E++ +K LGV+I I G++++ E+ L+E Y A FI G PK I G+
Sbjct: 244 EIELMKDLGVKI----ICGKSISTDEMTLSTLKENGYKAAFIGIGLPEPKKDHIFQGLTQ 299
Query: 262 LNGIYSANEFLTRINLMKAYKFPEYDTPIV-VGKRVIVIGAGNTAMDAARSALRLGAE-V 319
+ G Y++ +FL + +P+ V VIV+GAG+TA D A SALR GA V
Sbjct: 300 VQGFYTSKDFLPLVAKGSKPGMCACHSPLPSVRGAVIVLGAGDTAFDCATSALRCGARRV 359
Query: 320 IIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERD 379
I +R+G ++ A EE++ AKEE +F+ F++P + I ++G++ ++F + E+D
Sbjct: 360 FIVFRKGFANIRAVPEEMELAKEEKCEFLPFLSPRKVIV-KDGKIVGMQFVRT----EQD 414
Query: 380 KRGKRKIVGTGEYITVEADTVIIAIGQTPN--KILWRTTPGLKVREDGTIIVD-ENLMTS 436
+ G + + + ++AD VI G + K++ +P +K G V+ E + TS
Sbjct: 415 ETGNW-VEDEEQIVRLKADVVISPFGSVLDDPKVIEALSP-IKFNRWGLPEVNPETMQTS 472
Query: 437 IPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
P VFAGGD + T + ++ DG++A+ IHEY+
Sbjct: 473 EPWVFAGGDVVGMANTTVESVNDGKQASWYIHEYI 507
>pir||S74625 NADH-glutamate synthase small chain gltD - Synechocystis sp.
(strain PCC 6803) >gi|1651850|dbj|BAA16777.1| (D90900)
NADH-glutamate synthase small subunit [Synechocystis
sp.]
Length = 494
Score = 203 bits (510), Expect = 5e-51
Identities = 155/488 (31%), Positives = 238/488 (48%), Gaps = 46/488 (9%)
Query: 13 ERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEY-------APCIKGCPVNIDIPGF 65
E SP +R+R+++E ++ + + RC+ C + + GCP+N IP F
Sbjct: 17 ELSPGDRLRNWDEFHVTMPDKQVETQGARCMDCGTPFCHTGSLISGMASGCPINNLIPEF 76
Query: 66 IRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKL 125
N R REAL + N+ P TGRVCP CEG CV+G P+ I +
Sbjct: 77 ------NDLVYRGLWREALDRLHKTNNFPEFTGRVCPAP--CEGSCVLGINNPPVTIKNI 128
Query: 126 ERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEA 185
E + + + G + KR GK+VAV+G+GPAGL AA+L K G+ VT++E
Sbjct: 129 EYSIIEKGWQEG-----WVTPEPPAKRTGKKVAVVGSGPAGLAAAAQLNKAGHWVTVYER 183
Query: 186 LHEPGGVLAYGIPEFRLPK-EILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIF 244
PGG+L YGIP +L K E++ + L L+ GV + +G+ + LL++YDA+
Sbjct: 184 EDRPGGLLMYGIPNMKLDKEEVVLRRLNVLEAEGVTFVCNTEIGKDLPPETLLKDYDAVV 243
Query: 245 ISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNT 304
+ TGA P+ L I G L GI+ A EFLT K P + K V++IG G+T
Sbjct: 244 LCTGATKPRDLAIAGRELEGIHFAMEFLTANTKAILDKTPGPNFISAKDKDVVIIGGGDT 303
Query: 305 AMDAARSALRLGAEVIIAYR---RGKEDMTA--------RIEEVQHAKEEGVKF------ 347
D ++LR G ++ + E+ A ++ ++ + +EE
Sbjct: 304 GTDCVGTSLRHGCRSLVQLEIMPKPPEERAANNPWPEWPKVYKMDYGQEEAAAVYGHDPR 363
Query: 348 MFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGK---RKIVGTGEYITVEADTVIIAI 404
+ + GD++GRVKAV ++ E+D +G+ +++ GT + A V++A+
Sbjct: 364 SYLTTATKIEGDDQGRVKAVHTVDVR--WEKDGQGRFIPQQVAGTEQ--VRPAQLVLLAM 419
Query: 405 GQTPNKILWRTTPGLKVREDGTIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKA 463
G + L G I + TSIPGVFA GD RG++ V+ A +GR A
Sbjct: 420 GFVGPESQLLDAMKLDKDARGNIKAEYGQYETSIPGVFAAGDCRRGQSLVVWAFNEGRGA 479
Query: 464 AKAIHEYL 471
AKA YL
Sbjct: 480 AKACDLYL 487
>pir||F65071 hypothetical protein b2878 - Escherichia coli (strain K-12)
>gi|887828|gb|AAA83059.1| (U28375) was o492p and o826p
before splice [Escherichia coli]
>gi|1789243|gb|AAC75916.1| (AE000371) putative
oxidoreductase, Fe-S subunit [Escherichia coli K12]
Length = 1032
Score = 202 bits (508), Expect = 8e-51
Identities = 147/421 (34%), Positives = 225/421 (52%), Gaps = 34/421 (8%)
Query: 50 APCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEG 109
APC+ C + DIP +IR L E+R +AL++I+ N+LPAITG +C + QC+
Sbjct: 458 APCVTACAIKQDIPEYIRLLGEHR------YADALELIYQRNALPAITGHIC--DHQCQY 509
Query: 110 VCVVGKVGDPINIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTC 169
C +NI +L++ A E G D+ + VAVIGAGPAGL
Sbjct: 510 NCTRLDYDSALNIRELKKV----ALEKGWDEYKQRWHKPAGSGSRHPVAVIGAGPAGLAA 565
Query: 170 AAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGR 229
LA+ G+ VT+FE GGV+ IP+FR+P E+++ ++ + GV K ++
Sbjct: 566 GYFLARAGHPVTLFEREANAGGVVKNIIPQFRIPAELIQHDIDFVAAHGV--KFEYGCSP 623
Query: 230 TVTIPELLEE-YDAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDT 288
+TI +L + + + I+TG +K+ G N N ++ + FL N A K
Sbjct: 624 DLTIEQLKNQGFHYVLIATGTDKNSGVKLAGDNQN-VWKSLPFLREYNKGTALK------ 676
Query: 289 PIVVGKRVIVIGAGNTAMDAARSALRL-GAE-VIIAYRRGKEDMTARIEEVQHAKEEGVK 346
+GK V+V+GAGNTAMD AR+ALR+ G E I YRR ++M A EE + A +GV+
Sbjct: 677 ---LGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAWREEYEEALHDGVE 733
Query: 347 FMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQ 406
F F NP F D +G + ++ L E D++G+R+ V T E +T+ D++I AIG+
Sbjct: 734 FRFLNNPERF--DADGTLTL----RVMSLGEPDEKGRRRPVETNETVTLLVDSLITAIGE 787
Query: 407 TPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKA 466
+ G+ + ++G VD N T + VF GD RG ++++ A+G R+A A
Sbjct: 788 QQDTEALNAM-GVPLDKNGWPDVDHNGETRLTDVFMIGDVQRGPSSIVAAVGTARRATDA 846
Query: 467 I 467
I
Sbjct: 847 I 847
>sp|Q03460|GLSN_MEDSA GLUTAMATE SYNTHASE [NADH] PRECURSOR (NADH-GOGAT)
>gi|484529|pir||JQ1977 glutamate synthase (NADH) (EC
1.4.1.14) precursor [validated] - alfalfa
>gi|166412|gb|AAB46617.1| (L01660) NADH-glutamate
synthase [Medicago sativa]
Length = 2194
Score = 201 bits (507), Expect = 1e-50
Identities = 157/495 (31%), Positives = 247/495 (49%), Gaps = 48/495 (9%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYT-WELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
ER R P R+ D+NEV + L ++ RC+ C + GCP+ IP
Sbjct: 1688 EREGVQYRDPNVRLNDWNEVMMETKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPE 1747
Query: 65 FIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGK 124
F + +NR +EAL+ + N+ P TGRVCP CEG CV+G + +P++I
Sbjct: 1748 FNELVYQNR------WQEALERLLETNNFPEFTGRVCPAP--CEGSCVLGIIENPVSIKN 1799
Query: 125 LERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
+E + D A E G M +KR GKRVA++G+GP+GL A +L KMG+ VT+FE
Sbjct: 1800 IECAIIDKAFEEG-----WMIPRPPVKRTGKRVAIVGSGPSGLAAADQLNKMGHIVTVFE 1854
Query: 185 ALHEPGGVLAYGIPEFRLPK-EILRKELKKLKFLGVEIKTDHIVG--RTVTIPELLEEYD 241
GG++ YG+P + K +I+++ + + G+ + +G ++ L EE D
Sbjct: 1855 RADRIGGLMMYGVPNMKTDKVDIVQRRVNLMAEEGINFVVNANIGLDPLYSLERLREEND 1914
Query: 242 AIFISTGAGTPKLLKIPGINLNGIYSANEFL---TRINLMKAYKFPEYDTPIVVGKRVIV 298
AI ++ GA P+ L +PG L+G++ A EFL T+ L + Y + GK+V+V
Sbjct: 1915 AIVLAVGATKPRDLPVPGRELSGVHFAMEFLHANTKSLLDSNLQDGNYIS--AKGKKVVV 1972
Query: 299 IGAGNTAMDAARSALRLGAEVIIAYRRGKE-----------DMTARIEEVQHAKEEG-VK 346
IG G+T D +++R G ++ + RI V + +E K
Sbjct: 1973 IGGGDTGTDCIGTSIRHGCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGHQEAETK 2032
Query: 347 F-----MFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGK---RKIVGTGEYITVEAD 398
F + V F+GDE G VK + E ++ E+D+ GK ++I G+ E I EAD
Sbjct: 2033 FGKDPRTYEVLTKRFVGDENGVVKGL--EVVRVCWEKDETGKFQFKEIEGSEEII--EAD 2088
Query: 399 TVIIAIGQTPNKILWRTTPGLKVREDGTIIVD-ENLMTSIPGVFAGGDAIRGEATVILAM 457
V++A+G + G++ D TS+ GVFA GD RG++ V+ A+
Sbjct: 2089 LVLLAMGFLGPEATIAEKLGVERDNRSNFKADYGRFSTSVDGVFAAGDCRRGQSLVVWAI 2148
Query: 458 GDGRKAAKAIHEYLS 472
+GR+AA + YL+
Sbjct: 2149 SEGRQAAAQVDSYLT 2163
>pir||B75551 glutamate synthase, small subunit - Deinococcus radiodurans
(strain R1) >gi|6457850|gb|AAF09769.1|AE001880_6
(AE001880) glutamate synthase, small subunit
[Deinococcus radiodurans]
Length = 488
Score = 201 bits (507), Expect = 1e-50
Identities = 153/488 (31%), Positives = 245/488 (49%), Gaps = 56/488 (11%)
Query: 15 SPVE-RVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENR 73
+P++ R++ ++E L A +A RC+ C + C GCPVN IP F + E+
Sbjct: 18 APIDARLKHYHEFMLPLDSASARLQATRCMDCGIPF--CNNGCPVNNIIPDFNNLVFEDD 75
Query: 74 DNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVADYA 133
+ AL V+ A N+ P TGR+CP CE C + DP+ I +E + +
Sbjct: 76 ------WKAALDVLHATNNFPEFTGRICPAP--CEAACTLNISEDPVGIKSIELAIIERG 127
Query: 134 REHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL 193
+ G + + GK+VAV+G+GPAGL A +LA+ G++VT+FE GG++
Sbjct: 128 WQEG-----WVRPTPAEVKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGGLV 182
Query: 194 AYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVG-------------RTVTIPELLEEY 240
YGIP+F+L K + + +++++ GV +T +VG VT EL E++
Sbjct: 183 RYGIPDFKLDKSHIDRRIEQMQAEGVTFRTGVLVGDWDENSKITNLSKERVTPAELREQF 242
Query: 241 DAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKA-YKFPEYDTPIVVGKRVIVI 299
DA+ ++ G+ TP+ L PG LNGI+ A EFL + N + A KF GK V+VI
Sbjct: 243 DAVVLAGGSETPRDLPAPGRELNGIHYAMEFLPQQNRVNAGDKFKGQIR--ADGKHVVVI 300
Query: 300 GAGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIE-----------EVQHAKEEGVKFM 348
G G+T D ++ R GA + + + + + EEG
Sbjct: 301 GGGDTGSDCVGTSNRHGAAGVTQFEVMPQPPEQENKPLTWPYWPMKLRTSTSHEEGAVRE 360
Query: 349 FFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGK-RKIVGTGEYITVEADTVIIAIGQT 407
F + EFIG + G+V V+ +++ K GK +I G+ E T +AD V++A+G T
Sbjct: 361 FAIATKEFIG-KGGKVTGVRTVRVEM-----KDGKLEEIPGSEE--THKADLVLLAMGFT 412
Query: 408 PNKILWRTTPGLKVREDGTIIVDE----NLMTSIPGVFAGGDAIRGEATVILAMGDGRKA 463
G+ G ++ +TS+PGVFA GD RG++ V+ A+ +GR+A
Sbjct: 413 NPMQSVLDAFGVDKDPRGNVLAGTEEHGGYLTSVPGVFAAGDMRRGQSLVVWAIREGRQA 472
Query: 464 AKAIHEYL 471
A+A+ ++L
Sbjct: 473 ARAVDQFL 480
>dbj|BAA12742.1| (D85230) small subunit of NADH-dependent glutamate synthase
[Plectonema boryanum]
Length = 492
Score = 200 bits (504), Expect = 2e-50
Identities = 155/491 (31%), Positives = 250/491 (50%), Gaps = 54/491 (10%)
Query: 13 ERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEY-------APCIKGCPVNIDIPGF 65
E +P++R+R+++E +L E + RC+ C + + GCP+N IP +
Sbjct: 17 ELAPLDRIRNWDEFHLSMPEENLRTQGARCMDCGIPFCHTGTLISGMASGCPINNLIPEW 76
Query: 66 IRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKL 125
+ R +EAL + N+ P TGRVCP CEG CV+G P+ I +
Sbjct: 77 NDLIY------RGLWKEALDRLHKTNNFPEFTGRVCPAP--CEGSCVLGIHNPPVTIKNI 128
Query: 126 ERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEA 185
E +A E G ++ + E KR GK++A++G+GPAGL+ AA+L K+G+ VT+FE
Sbjct: 129 EYSIA----EKGWNEGWIKPEPPA-KRTGKKIAIVGSGPAGLSAAAQLNKVGHWVTVFER 183
Query: 186 LHEPGGVLAYGIPEFRLPK-EILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIF 244
PGG+L YGIP +L K E++ + L L+ GV+ + +G+ + +LL ++DA+
Sbjct: 184 ADRPGGLLMYGIPNMKLDKQEVVMRRLNILEAEGVKFVCNTEIGKDLPAEDLLRDFDAVV 243
Query: 245 ISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVV--GKRVIVIGAG 302
+ TGA P+ L I G L GI+ A +FLT + P + GK V++IG G
Sbjct: 244 LCTGATKPRDLPIEGRQLKGIHFAMDFLT----ANTQAVLDQTEPAITAQGKDVVIIGGG 299
Query: 303 NTAMDAARSALRLGAEVIIAYR---RGKEDMT--------ARIEEVQHAKEE-GVKF--- 347
+T D +++R G ++ + E+ ++ ++ + +EE KF
Sbjct: 300 DTGTDCVGTSIRHGCNGLVQLEILPQPPEERAPNNPWPEYPKVYKMDYGQEEAAAKFGGD 359
Query: 348 --MFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGK---RKIVGTGEYITVEADTVII 402
+ F GDE+G VKAV +++ ER+++G+ ++I GT + I A V++
Sbjct: 360 PRAYLRTATHFEGDEQGNVKAVHTVEVQ--WERNEQGQFIPKQIPGTEKII--PAQLVLL 415
Query: 403 AIGQTPNKILWRTTPGLKVREDGTIIVDE--NLMTSIPGVFAGGDAIRGEATVILAMGDG 460
A+G + GL R+ + I E TSIP VFA GD RG++ V+ A +G
Sbjct: 416 AMGFLGPEQPLLDAMGLD-RDARSNIKSEYGRYTTSIPKVFAAGDCRRGQSLVVWAFNEG 474
Query: 461 RKAAKAIHEYL 471
R AA+ YL
Sbjct: 475 RGAARECDLYL 485
>gb|AAB41904.1| (L37606) NADH-dependent glutamate synthase [Medicago sativa]
Length = 2194
Score = 199 bits (502), Expect = 4e-50
Identities = 156/495 (31%), Positives = 246/495 (49%), Gaps = 48/495 (9%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYT-WELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
ER R P R+ D+NEV + L ++ RC+ C + GCP+ IP
Sbjct: 1688 EREGVQYRDPNVRLNDWNEVMMETKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPE 1747
Query: 65 FIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGK 124
F + +NR +EAL+ + N+ P TGRVCP CEG CV+G + +P++I
Sbjct: 1748 FNELVYQNR------WQEALERLLETNNFPEFTGRVCPAP--CEGSCVLGIIENPVSIKN 1799
Query: 125 LERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
+E + D A E G M +KR GKRVA++G+GP+GL A +L KMG+ VT+FE
Sbjct: 1800 IECAIIDKAFEEG-----WMIPRPPVKRTGKRVAIVGSGPSGLAAADQLNKMGHIVTVFE 1854
Query: 185 ALHEPGGVLAYGIPEFRLPK-EILRKELKKLKFLGVEIKTDHIVG--RTVTIPELLEEYD 241
GG++ YG+P + K +I+++ + + G+ + +G ++ L EE D
Sbjct: 1855 RADRIGGLMMYGVPNMKTDKVDIVQRRVNLMAEEGINFVVNANIGLDPLYSLERLREEND 1914
Query: 242 AIFISTGAGTPKLLKIPGINLNGIYSANEFL---TRINLMKAYKFPEYDTPIVVGKRVIV 298
AI ++ GA P+ L +PG L+G++ A EFL T+ L + Y + GK+V+V
Sbjct: 1915 AIVLAVGATKPRDLPVPGRELSGVHFAMEFLHANTKSLLDSNLQDGNYIS--AKGKKVVV 1972
Query: 299 IGAGNTAMDAARSALRLGAEVIIAYRRGKE-----------DMTARIEEVQHAKEEG-VK 346
IG G+T D +++R G ++ + RI V + +E K
Sbjct: 1973 IGGGDTGTDCIGTSIRHGCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGHQEAETK 2032
Query: 347 F-----MFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGK---RKIVGTGEYITVEAD 398
F + V F+GDE G VK + E ++ E+D+ GK ++I G+ E I EAD
Sbjct: 2033 FGKDPRTYEVLTKRFVGDENGVVKGL--EVVRVCWEKDETGKFQFKEIEGSEEII--EAD 2088
Query: 399 TVIIAIGQTPNKILWRTTPGLKVREDGTIIVD-ENLMTSIPGVFAGGDAIRGEATVILAM 457
V++A+G + G++ D TS+ GVFA GD RG++ V+ A+
Sbjct: 2089 LVLLAMGFLGPEATIAEKLGVERDNRSNFKADYGRFSTSVDGVFAAGDCRRGQSLVVWAI 2148
Query: 458 GDGRKAAKAIHEYLS 472
+GR+ A + YL+
Sbjct: 2149 SEGRQRAAQVDSYLT 2163
>gi|4503373 dihydropyrimidine dehydrogenase [Homo sapiens]
>gi|2498310|sp|Q12882|DPYD_HUMAN DIHYDROPYRIMIDINE
DEHYDROGENASE [NADP+] PRECURSOR (DPD) (DIHYDROURACIL
DEHYDROGENASE) (DIHYDROTHYMINE DEHYDROGENASE)
>gi|1082333|pir||A54718 dihydropyrimidine dehydrogenase
(NADP+) (EC 1.3.1.2) - human >gi|558305|gb|AAA57474.1|
(U09178) dihydropyrimidine dehydrogenase [Homo sapiens]
Length = 1025
Score = 199 bits (501), Expect = 6e-50
Identities = 158/455 (34%), Positives = 247/455 (53%), Gaps = 37/455 (8%)
Query: 35 ALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLP 94
ALREA RCL+C APC K CP N+DI FI ++ K A K+I++ N L
Sbjct: 72 ALREAMRCLKCAD--APCQKSCPTNLDIKSFITSIAN------KNYYGAAKMIFSDNPLG 123
Query: 95 AITGRVCPQEDQCEGVCVVGKVGD-PINIGKLERFVADYAREHGID---DELLMEEIRGI 150
G VCP D C G C + + PINIG L++F + + I + L +
Sbjct: 124 LTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPEKMS 183
Query: 151 KRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEFRLPKEILRK 209
+ ++A+ GAGPA ++CA+ LA++GY ++TIFE GG+ IP+FRLP +++
Sbjct: 184 EAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNF 243
Query: 210 ELKKLKFLGVEIKTDHIVGRTVTIPEL----LEE--YDAIFISTGAGTP-KLLKIPGINL 262
E++ +K LGV+I I G+++++ E+ L+E Y A FI G P K G+
Sbjct: 244 EIELMKDLGVKI----ICGKSLSVNEMTLSTLKEKGYKAAFIGIGLPEPNKDAIFQGLTQ 299
Query: 263 N-GIYSANEFLTRINLMKAYKFPEYDTPI-VVGKRVIVIGAGNTAMDAARSALRLGA-EV 319
+ G Y++ +FL + +P+ + VIV+GAG+TA D A SALR GA V
Sbjct: 300 DQGFYTSKDFLPLVAKGSKAGMCACHSPLPSIRGVVIVLGAGDTAFDCATSALRCGARRV 359
Query: 320 IIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERD 379
I +R+G ++ A EE++ AKEE +F+ F++P + I + GR+ A++F + E+D
Sbjct: 360 FIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVI-VKGGRIVAMQFVR----TEQD 414
Query: 380 KRGKRKIVGTGEYITVEADTVIIAIGQ--TPNKILWRTTPGLKVREDGTIIVD-ENLMTS 436
+ GK + + ++AD VI A G + K+ +P +K G VD E + TS
Sbjct: 415 ETGKWN-EDEDQMVHLKADVVISAFGSVLSDPKVKEALSP-IKFNRWGLPEVDPETMQTS 472
Query: 437 IPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
VFAGGD + T + ++ DG++A+ IH+Y+
Sbjct: 473 EAWVFAGGDVVGLANTTVESVNDGKQASWYIHKYV 507
>gb|AAB51366.1| (U20938) No definition line found [Homo sapiens]
>gi|6729338|dbj|BAA89789.1| (AB003063) dihydropyrimidine
dehydrogenase [Homo sapiens]
Length = 1025
Score = 199 bits (501), Expect = 6e-50
Identities = 158/455 (34%), Positives = 247/455 (53%), Gaps = 37/455 (8%)
Query: 35 ALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLP 94
ALREA RCL+C APC K CP N+DI FI ++ K A K+I++ N L
Sbjct: 72 ALREAMRCLKCAD--APCQKSCPTNLDIKSFITSIAN------KNYYGAAKMIFSDNPLG 123
Query: 95 AITGRVCPQEDQCEGVCVVGKVGD-PINIGKLERFVADYAREHGID---DELLMEEIRGI 150
G VCP D C G C + + PINIG L++F + + I + L +
Sbjct: 124 LTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPEKMS 183
Query: 151 KRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEFRLPKEILRK 209
+ ++A+ GAGPA ++CA+ LA++GY ++TIFE GG+ IP+FRLP +++
Sbjct: 184 EAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNF 243
Query: 210 ELKKLKFLGVEIKTDHIVGRTVTIPEL----LEE--YDAIFISTGAGTP-KLLKIPGINL 262
E++ +K LGV+I I G+++++ E+ L+E Y A FI G P K G+
Sbjct: 244 EIELMKDLGVKI----ICGKSLSVNEMTLSTLKEKGYKAAFIGIGLPEPNKDAIFQGLTQ 299
Query: 263 N-GIYSANEFLTRINLMKAYKFPEYDTPI-VVGKRVIVIGAGNTAMDAARSALRLGA-EV 319
+ G Y++ +FL + +P+ + VIV+GAG+TA D A SALR GA V
Sbjct: 300 DQGFYTSKDFLPLVAKGSKAGMCACHSPLPSIRGVVIVLGAGDTAFDCATSALRCGARRV 359
Query: 320 IIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERD 379
I +R+G ++ A EE++ AKEE +F+ F++P + I + GR+ A++F + E+D
Sbjct: 360 FIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVI-VKGGRIVAMQFVR----TEQD 414
Query: 380 KRGKRKIVGTGEYITVEADTVIIAIGQ--TPNKILWRTTPGLKVREDGTIIVD-ENLMTS 436
+ GK + + ++AD VI A G + K+ +P +K G VD E + TS
Sbjct: 415 ETGKWN-EDEDQMVHLKADVVISAFGSVLSDPKVKEALSP-IKFNRWGLPEVDPETMQTS 472
Query: 437 IPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
VFAGGD + T + ++ DG++A+ IH+Y+
Sbjct: 473 EAWVFAGGDVVGLANTTVESVNDGKQASWYIHKYV 507
>gb|AAF49409.1| (AE003526) CG9674 gene product [alt 1] [Drosophila melanogaster]
Length = 2162
Score = 199 bits (500), Expect = 7e-50
Identities = 151/488 (30%), Positives = 247/488 (49%), Gaps = 41/488 (8%)
Query: 7 ERVPTPERSPVERVRDFNEV-NLGYTWELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
+R P R ER +D++EV N + + +A RC++C + GCP+ IP
Sbjct: 1678 KRESAPYRDAGERQKDWDEVYNFPHVRKNLKVQAARCMECGVPFCQSNSTGCPLGNIIPK 1737
Query: 65 FIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGK 124
+ + +EAL+ + N+ P TGRVCP CEG CV+G + I
Sbjct: 1738 WNDLVFHGE------WQEALRQLLQTNNFPEFTGRVCPAP--CEGSCVLGISEPAVTIKN 1789
Query: 125 LERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
+E + D+A E G + EI + R GKRVA++G+GP+GL + +L + G+ VT+FE
Sbjct: 1790 IECAIIDHAFEQG----WIKPEIPEV-RTGKRVAIVGSGPSGLAASQQLNRAGHFVTVFE 1844
Query: 185 ALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIF 244
GG+L YGIP +L KE++++ + + G+E +T+ VG+ + +LL+EYDA+
Sbjct: 1845 RNDRVGGLLQYGIPTMKLSKEVVKRRVDLMADEGIEFRTNVHVGKDLKAEQLLQEYDAVL 1904
Query: 245 ISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNT 304
++TG+ P+ L + +L GI+ A EFL K + D GK VI+IG G+T
Sbjct: 1905 LTTGSTWPRDLPLANRDLKGIHFAMEFLEA--QQKKQLGGKNDIISAAGKNVIIIGGGDT 1962
Query: 305 AMDAARSALRLGAEVIIAYRRGKEDMTARIEE-----------VQHAKEEGVKFMFFVNP 353
D ++LR GA+ I + E R ++ V + EE VK + +P
Sbjct: 1963 GCDCIATSLRQGAKSITTFEILPEPPQKRAQDNPWPQWPKVFRVDYGHEE-VKLKWGKDP 2021
Query: 354 -------VEFIGDEEGRVKAVKFEKMK-PLEERDKRGKRKIVGTGEYITVEADTVIIAIG 405
EF+G E G +K V +++ E + +++ G+ +Y AD +++A+G
Sbjct: 2022 RQYCTTTKEFVG-ENGAIKGVNTVEVEWTKTETGQWRMQEVAGSEKYF--PADLILLAMG 2078
Query: 406 QTPNKILWRTTPGLKVREDGTIIVDENLM-TSIPGVFAGGDAIRGEATVILAMGDGRKAA 464
+ + GL++ G I TS VFA GD RG++ V+ A+ +GR+AA
Sbjct: 2079 FLGPEKTVPSELGLELDPRGNIKASNGQYGTSNSKVFAAGDCRRGQSLVVWAITEGRQAA 2138
Query: 465 KAIHEYLS 472
+ + YL+
Sbjct: 2139 RQVDSYLT 2146
>gb|AAF49410.1| (AE003526) CG9674 gene product [alt 3] [Drosophila melanogaster]
>gi|7294056|gb|AAF49411.1| (AE003526) CG9674 gene
product [alt 2] [Drosophila melanogaster]
Length = 915
Score = 199 bits (500), Expect = 7e-50
Identities = 151/488 (30%), Positives = 247/488 (49%), Gaps = 41/488 (8%)
Query: 7 ERVPTPERSPVERVRDFNEV-NLGYTWELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
+R P R ER +D++EV N + + +A RC++C + GCP+ IP
Sbjct: 431 KRESAPYRDAGERQKDWDEVYNFPHVRKNLKVQAARCMECGVPFCQSNSTGCPLGNIIPK 490
Query: 65 FIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGK 124
+ + +EAL+ + N+ P TGRVCP CEG CV+G + I
Sbjct: 491 WNDLVFHGE------WQEALRQLLQTNNFPEFTGRVCPAP--CEGSCVLGISEPAVTIKN 542
Query: 125 LERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
+E + D+A E G + EI + R GKRVA++G+GP+GL + +L + G+ VT+FE
Sbjct: 543 IECAIIDHAFEQG----WIKPEIPEV-RTGKRVAIVGSGPSGLAASQQLNRAGHFVTVFE 597
Query: 185 ALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIF 244
GG+L YGIP +L KE++++ + + G+E +T+ VG+ + +LL+EYDA+
Sbjct: 598 RNDRVGGLLQYGIPTMKLSKEVVKRRVDLMADEGIEFRTNVHVGKDLKAEQLLQEYDAVL 657
Query: 245 ISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNT 304
++TG+ P+ L + +L GI+ A EFL K + D GK VI+IG G+T
Sbjct: 658 LTTGSTWPRDLPLANRDLKGIHFAMEFLEA--QQKKQLGGKNDIISAAGKNVIIIGGGDT 715
Query: 305 AMDAARSALRLGAEVIIAYRRGKEDMTARIEE-----------VQHAKEEGVKFMFFVNP 353
D ++LR GA+ I + E R ++ V + EE VK + +P
Sbjct: 716 GCDCIATSLRQGAKSITTFEILPEPPQKRAQDNPWPQWPKVFRVDYGHEE-VKLKWGKDP 774
Query: 354 -------VEFIGDEEGRVKAVKFEKMK-PLEERDKRGKRKIVGTGEYITVEADTVIIAIG 405
EF+G E G +K V +++ E + +++ G+ +Y AD +++A+G
Sbjct: 775 RQYCTTTKEFVG-ENGAIKGVNTVEVEWTKTETGQWRMQEVAGSEKYF--PADLILLAMG 831
Query: 406 QTPNKILWRTTPGLKVREDGTIIVDENLM-TSIPGVFAGGDAIRGEATVILAMGDGRKAA 464
+ + GL++ G I TS VFA GD RG++ V+ A+ +GR+AA
Sbjct: 832 FLGPEKTVPSELGLELDPRGNIKASNGQYGTSNSKVFAAGDCRRGQSLVVWAITEGRQAA 891
Query: 465 KAIHEYLS 472
+ + YL+
Sbjct: 892 RQVDSYLT 899
>gi|6320030 Glutamate synthase (NADPH); Glt1p [Saccharomyces cerevisiae]
>gi|2131263|pir||S61041 glutamate synthase (NADH) (EC
1.4.1.14) glt1 precursor [similarity] - yeast
(Saccharomyces cerevisiae) >gi|1061267|emb|CAA91574.1|
(Z67750) putative protein [Saccharomyces cerevisiae]
>gi|1431274|emb|CAA98745.1| (Z74219) ORF YDL171c
[Saccharomyces cerevisiae]
Length = 2145
Score = 198 bits (499), Expect = 9e-50
Identities = 144/488 (29%), Positives = 241/488 (48%), Gaps = 35/488 (7%)
Query: 4 LIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIP 63
+I +R R P RV D+ E T + A + RC+ C + GCP++ IP
Sbjct: 1645 MIHKRRHETHRDPRTRVNDWKEFTNPITKKDAKYQTARCMDCGTPFCLSDTGCPLSNIIP 1704
Query: 64 GFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIG 123
F L +N+ + AL + N+ P TGRVCP CEG C +G + DP+ I
Sbjct: 1705 KFNELLFKNQ------WKLALDKLLETNNFPEFTGRVCPAP--CEGACTLGIIEDPVGIK 1756
Query: 124 KLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+ER + D A + G ++ R G V VIG+GPAGL CA L + G+ VT++
Sbjct: 1757 SVERIIIDNAFKEG-----WIKPCPPSTRTGFTVGVIGSGPAGLACADMLNRAGHTVTVY 1811
Query: 184 EALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAI 243
E GG+L YGIP +L K I+++ + L G++ T+ +G+T+++ EL +++A+
Sbjct: 1812 ERSDRCGGLLMYGIPNMKLDKAIVQRRIDLLSAEGIDFVTNTEIGKTISMDELKNKHNAV 1871
Query: 244 FISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGN 303
+ G+ P+ L I G L I A + L K E + GK+VIV+G G+
Sbjct: 1872 VYAIGSTIPRDLPIKGRELKNIDFAMQLLESNTKALLNKDLEIIREKIQGKKVIVVGGGD 1931
Query: 304 TAMDAARSALRLGAEVIIAY--------RRGKED---MTARIEEVQHAKEEGVKFMFFVN 352
T D +++R GA ++ + R K++ R+ V + E VK + +
Sbjct: 1932 TGNDCLGTSVRHGAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAE-VKEHYGRD 1990
Query: 353 P-------VEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIG 405
P EFIG++EG V A++ +++ + + + + E I EAD +++++G
Sbjct: 1991 PREYCILSKEFIGNDEGEVTAIRTVRVEWKKSQSGVWQMVEIPNSEEI-FEADIILLSMG 2049
Query: 406 QTPNKILWRTTPGLKVREDGTIIVDENLMTSIPG--VFAGGDAIRGEATVILAMGDGRKA 463
+++ +K GTI ++ SI G FA GD RG++ ++ A+ +GRK
Sbjct: 2050 FVGPELINGNDNEVKKTRRGTIATLDDSSYSIDGGKTFACGDCRRGQSLIVWAIQEGRKC 2109
Query: 464 AKAIHEYL 471
A ++ ++L
Sbjct: 2110 AASVDKFL 2117
>dbj|BAA97323.1| (AB020754) NADH-dependent glutamate synthase [Arabidopsis thaliana]
Length = 2216
Score = 198 bits (499), Expect = 9e-50
Identities = 152/497 (30%), Positives = 252/497 (50%), Gaps = 48/497 (9%)
Query: 7 ERVPTPERSPVERVRDFNEV-NLGYTWELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
ER R P R+ D+NEV L ++ RC+ C + GCP+ IP
Sbjct: 1717 EREGVKYRDPNVRLNDWNEVMEESKPGPLLTTQSARCMDCGTPFCHQENSGCPLGNKIPE 1776
Query: 65 FIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGK 124
F + +NR +EAL + N+ P TGRVCP CEG CV+G + +P++I
Sbjct: 1777 FNELVYQNR------WQEALNRLLETNNFPEFTGRVCPAP--CEGSCVLGIIENPVSIKS 1828
Query: 125 LERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
+E + D A E G M +KR GK+VA+IG+GPAGL A +L KMG+ VT++E
Sbjct: 1829 IECAIIDKAFEEG-----WMVPRPPLKRTGKKVAIIGSGPAGLAAADQLNKMGHLVTVYE 1883
Query: 185 ALHEPGGVLAYGIPEFRLPK-EILRKELKKLKFLGVEIKTDHIVGR--TVTIPELLEEYD 241
GG++ YG+P + K +++++ + + G+ + +G+ + ++ L EE D
Sbjct: 1884 RSDRIGGLMMYGVPNMKTDKIDVVQRRVDLMTKEGINFVVNANIGKDPSYSLDGLKEEND 1943
Query: 242 AIFISTGAGTPKLLKIPGINLNGIYSANEFL---TRINLMKAYKFPEYDTPIVVGKRVIV 298
AI ++ G+ P+ L +PG +L+G++ A EFL T+ L ++ Y + GK+V+V
Sbjct: 1944 AIVLAVGSTKPRDLPVPGRDLSGVHFAMEFLHANTKSLLDSNHEDGNYIS--AKGKKVVV 2001
Query: 299 IGAGNTAMDAARSALRLGAEVIIAYRRGKEDMTA-----------RIEEVQHAKEEG-VK 346
IG G+T D +++R G I+ + + R+ + + +E K
Sbjct: 2002 IGGGDTGTDCIGTSIRHGCTNIVNLELLPQPPSTRAPGNPWPQWPRVFRIDYGHQEATTK 2061
Query: 347 F-----MFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGK---RKIVGTGEYITVEAD 398
F + V FIGD+ G VK + E ++ E+D+ G+ ++I G+ E I EAD
Sbjct: 2062 FGKDPRTYEVLTKRFIGDDNGNVKGL--ELVRVSWEKDETGRFQFKEIEGSEEII--EAD 2117
Query: 399 TVIIAIGQTPNKILWRTTPGLKVREDGTIIVD-ENLMTSIPGVFAGGDAIRGEATVILAM 457
V +A+G + GL+ + T++ GVFA GD RG++ V+ A+
Sbjct: 2118 LVFLAMGFLGPEPTLAEKLGLECDNRSNFKAEYGRFSTTVEGVFAAGDCRRGQSLVVWAI 2177
Query: 458 GDGRKAAKAIHEYLSKS 474
+GR+AA + ++L+K+
Sbjct: 2178 SEGRQAADQVDKFLTKT 2194
>pir||F82085 glutamate synthase, small chain VC2374 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656944|gb|AAF95517.1|
(AE004307) glutamate synthase, small subunit [Vibrio
cholerae]
Length = 489
Score = 198 bits (499), Expect = 9e-50
Identities = 139/473 (29%), Positives = 239/473 (50%), Gaps = 37/473 (7%)
Query: 16 PVERVRDFNEVNLGYTWELAL-REAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRD 74
P ER+++ E L + + ++A RC+ C + C GCP+ IP F A+
Sbjct: 20 PAERIKNNKEFVLNQEFGKKINQQASRCMDCGVPF--CHNGCPIGNIIPEFNDAVY---- 73
Query: 75 NPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVADYAR 134
R + EA ++ + N+ P TGRVCP CE CV+G DPI I +E+ + + A
Sbjct: 74 --RDSWEEAWNILSSTNNFPEFTGRVCPAP--CETACVLGINQDPITICNIEKTIVERAY 129
Query: 135 EHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLA 194
+ G R GK VA+IG+GPAGL A +L G+ VT+FE + GG+L
Sbjct: 130 QEGYAKPKTPRS-----RTGKTVAIIGSGPAGLAAAEQLNAAGHSVTVFERDEKVGGLLR 184
Query: 195 YGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKL 254
+GIP+F+L +++ +++ ++ GV+ + +G + +L +E+DA+ ++ G+ P+
Sbjct: 185 FGIPDFKLGMDVIDRKINLMEQAGVKFVVNAHIGVDINAQQLRQEFDAVLLTGGSTVPRD 244
Query: 255 LKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALR 314
L IPG +L G+Y A +FL + N + + GK V+VIG G+T D ++ R
Sbjct: 245 LSIPGRDLKGVYFAMQFLAQNNRRANGMDLKGEEIHAKGKHVVVIGGGDTGSDCVGTSNR 304
Query: 315 LGAEVI-------IAYRRGKEDMT----ARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGR 363
GA I I ++ +M I + EEG + + + EFIG+E+G
Sbjct: 305 HGAASITQVEIMPIPPQKRPVNMPWPQYPMILRTSTSHEEGCERHWNILTKEFIGNEQGE 364
Query: 364 VKAVKFEKM--KPLEERDKRGKRKIVGTGEYITVEADTVIIAIG---QTPNKILWRTTPG 418
V ++ + K ++ ++VG+ + D +A+G P+ +L + G
Sbjct: 365 VTGLRIADIVWKDAAPGERPSFDEVVGSER--VIPCDMAFLAMGFLHPEPHGVLAQL--G 420
Query: 419 LKVREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
+K+ E G + ++ T+ GVFA GD G++ V+ + +GR+ A+A+ +L
Sbjct: 421 IKLDERGN-VATQDFATNQKGVFAAGDMRTGQSLVVRCINEGRECARAVDTFL 472
>sp|Q12680|GLT1_YEAST GLUTAMATE SYNTHASE [NADPH] PRECURSOR (NADPH-GOGAT)
>gi|1370295|emb|CAA61505.1| (X89221) glutamate synthase
(NADPH) [Saccharomyces cerevisiae]
Length = 2144
Score = 198 bits (498), Expect = 1e-49
Identities = 144/488 (29%), Positives = 241/488 (48%), Gaps = 35/488 (7%)
Query: 4 LIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIP 63
+I +R R P RV D+ E T + A + RC+ C + GCP++ IP
Sbjct: 1644 MIHKRRHETHRDPRTRVNDWKEFTNPITKKDAKYQTARCMDCGTPFCLSDTGCPLSNIIP 1703
Query: 64 GFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIG 123
F L +N+ + AL + N+ P TGRVCP CEG C +G + DP+ I
Sbjct: 1704 KFNELLFKNQ------WKLALDKLLETNNFPEFTGRVCPAP--CEGACTLGIIEDPLGIK 1755
Query: 124 KLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+ER + D A + G ++ R G V VIG+GPAGL CA L + G+ VT++
Sbjct: 1756 SVERIIIDNAFKEG-----WIKPCPPSTRTGFTVGVIGSGPAGLACADMLNRAGHTVTVY 1810
Query: 184 EALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAI 243
E GG+L YGIP +L K I+++ + L G++ T+ +G+T+++ EL +++A+
Sbjct: 1811 ERSDRCGGLLMYGIPNMKLDKAIVQRRIDLLSAEGIDFVTNTEIGKTISMDELKNKHNAV 1870
Query: 244 FISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGN 303
+ G+ P+ L I G L I A + L K E + GK+VIV+G G+
Sbjct: 1871 VYAIGSTIPRDLPIKGRELKNIDFAMQLLESNTKALLNKDLEIIREKIQGKKVIVVGGGD 1930
Query: 304 TAMDAARSALRLGAEVIIAY--------RRGKED---MTARIEEVQHAKEEGVKFMFFVN 352
T D +++R GA ++ + R K++ R+ V + E VK + +
Sbjct: 1931 TGNDCLGTSVRHGAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAE-VKEHYGRD 1989
Query: 353 P-------VEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIG 405
P EFIG++EG V A++ +++ + + + + E I EAD +++++G
Sbjct: 1990 PREYCILSKEFIGNDEGEVTAIRTVRVEWKKSQSGVWQMVEIPNSEEI-FEADIILLSMG 2048
Query: 406 QTPNKILWRTTPGLKVREDGTIIVDENLMTSIPG--VFAGGDAIRGEATVILAMGDGRKA 463
+++ +K GTI ++ SI G FA GD RG++ ++ A+ +GRK
Sbjct: 2049 FVGPELINGNDNEVKKTRRGTIATLDDSSYSIDGGKTFACGDCRRGQSLIVWAIQEGRKC 2108
Query: 464 AKAIHEYL 471
A ++ ++L
Sbjct: 2109 AASVDKFL 2116
>dbj|BAB05448.1| (AP001513) glutamate synthase (small subunit) [Bacillus halodurans]
Length = 495
Score = 198 bits (498), Expect = 1e-49
Identities = 152/496 (30%), Positives = 239/496 (47%), Gaps = 49/496 (9%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIK--------GCPV 58
+R P++ P ER +++ E L ++ RC+ C + GCPV
Sbjct: 11 KRETPPKKDPFERSKNWQEFTLLMPESALRQQGARCMDCGVPFCQTGTSMDGSGEIGCPV 70
Query: 59 NIDIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGD 118
IP + N R +EAL+ + N+ P TGRVCP CEG C V D
Sbjct: 71 YNLIPEW------NDLVYRGHWKEALERLHKTNNFPEFTGRVCPAP--CEGSCTVAISDD 122
Query: 119 PINIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY 178
+ I +E + + + G ++ R R GK+VAV+G+GPAGL AA+L K G+
Sbjct: 123 AVAIKSMEFHIVERGFQEGW---IVPNPPRS--RTGKKVAVVGSGPAGLAAAAQLNKAGH 177
Query: 179 EVTIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLE 238
VT+FE GG+L YGIP+ +LP ++ + + LK G+E +T+ +G+ V+ +L +
Sbjct: 178 WVTVFEREDRIGGLLTYGIPDVKLPYHVVERRINLLKEEGIEFRTNVEIGKDVSAKQLKD 237
Query: 239 EYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIV--VGKRV 296
++DA+ + TGA P+ + + G L GI+ A +FLT N D + GK V
Sbjct: 238 DFDAVVLCTGATKPRDVNVKGRELKGIHFAMDFLT-ANTKSLLNSNHQDGNYISAKGKHV 296
Query: 297 IVIGAGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEE-------VQHAKEEGVK--- 346
+VIG G+T D +++R GA+ I + +E R + + H E+G K
Sbjct: 297 VVIGGGDTGADCITTSVRHGAKSITQFDINREKSNERPDNNPWPLFPIVHTVEDGHKEAA 356
Query: 347 -------FMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADT 399
+ V +F+GD EG VK + ++ D K ++ G AD
Sbjct: 357 AVYGKDPRAYQVMTTKFVGDAEGHVKEIHTISVETTVHPD-GSKTRVEIPGTEKVWPADL 415
Query: 400 VIIAIGQT-PNKILWRTTPGLKVREDGTIIVDE---NLMTSIPGVFAGGDAIRGEATVIL 455
V +A+G T P + L R L++ D + TS+ GVFA GD RG++ V+
Sbjct: 416 VFLAVGFTGPEEQLVRE---LELETDTRSNIKAEYGKYETSLEGVFAAGDNRRGQSLVVW 472
Query: 456 AMGDGRKAAKAIHEYL 471
A+ +GR+AA+ +YL
Sbjct: 473 AIHEGREAARECDKYL 488
>sp|Q18164|DPYD_CAEEL PROBABLE DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] (DPD)
(DIHYDROURACIL DEHYDROGENASE) (DIHYDROTHYMINE
DEHYDROGENASE) >gi|7451559|pir||T15616 hypothetical
protein C25F6.3 - Caenorhabditis elegans
>gi|1049458|gb|AAA80433.1| (U39742) coded for by C.
elegans cDNA yk28e9.3; coded for by C. elegans cDNA
yk28e9.5; coded for by C. elegans cDNA yk28h9.3; coded
for by C. elegans cDNA yk28h9.5; coded for by C. elegans
cDNA yk40e4.5; coded for by C. elegans cDNA yk5h3.5;
weakly si>
Length = 1084
Score = 197 bits (496), Expect = 2e-49
Identities = 152/451 (33%), Positives = 249/451 (54%), Gaps = 30/451 (6%)
Query: 35 ALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLP 94
AL+EA RCL+C APC K CP +D+ FI ++ K A + I + N L
Sbjct: 112 ALKEAMRCLKCAD--APCQKSCPTQLDVKSFITSISN------KNYYGAARQILSDNPLG 163
Query: 95 AITGRVCPQEDQCEGVC-VVGKVGDPINIGKLERFVADYAREHGIDDELLMEEIRGIKR- 152
G +CP D C G C + INIG L+++ D ++ + +++ +E+R +
Sbjct: 164 LTCGMICPTSDLCVGSCNLQASEEGAINIGGLQQYACDVFKQMNVR-QIVSKEVRENRNA 222
Query: 153 -NGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEFRLPKEILRKE 210
+ ++VA+IG GPA ++CA+ LA++GY ++TI+E GG+ + IP+FRLP +++ E
Sbjct: 223 SHKEQVALIGCGPASISCASFLARLGYTDITIYEKRAYIGGLSSAEIPQFRLPYDVVDFE 282
Query: 211 LKKLKFLGVEIKTDHIVGRT-VTIPELLEE-YDAIFISTGAGTPKLLKI-PGINL-NGIY 266
++ + +GV+I+T+ +G+ +T+ +L E+ A+FI G PK+ + G+ + NG Y
Sbjct: 283 IQLARDIGVQIETNRPLGKDGLTLAKLKEQGAAAVFIGIGNPEPKIDPLFEGLTIENGFY 342
Query: 267 SANEFLTRI-NLMKAYKFPEYDTPI-VVGKRVIVIGAGNTAMDAARSALRLGA-EVIIAY 323
++ +L + K TP+ + RV+V+GAG+TAMD A SALR GA V IA+
Sbjct: 343 TSKNYLPAVAAASKPGMCGCKRTPLPTMRGRVVVLGAGDTAMDCATSALRCGASRVTIAF 402
Query: 324 RRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGK 383
R+G + A EE++ AKEE +F+ F P + I ++GR+ +++F K E+D GK
Sbjct: 403 RKGFTGIRAVPEEMEAAKEEKCEFLPFSAPRK-INVKDGRIVSIEFNK----TEQDDNGK 457
Query: 384 RKIVGTGEYITVEADTVIIAIGQT--PNKILWRTTPGLKVREDGTIIVDENL-MTSIPGV 440
+ + ++ D VI A G T + +L P ++ + G I VD TS V
Sbjct: 458 -WYEDEEQIVILKCDYVISAFGSTLKEDAVLSALQP-CQLNKWGGIEVDSTTQQTSEKWV 515
Query: 441 FAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
FAGGD T + ++ DG+ AA +H Y+
Sbjct: 516 FAGGDVAGVAETTVESVNDGKIAAWNMHRYI 546
>pir||T49818 probable glutamate synthase (NADPH) [imported] - Neurospora crassa
>gi|8218225|emb|CAB92626.1| (AL356815) probable glutamate
synthase (NADPH) [Neurospora crassa]
Length = 2116
Score = 193 bits (486), Expect = 3e-48
Identities = 145/495 (29%), Positives = 240/495 (48%), Gaps = 64/495 (12%)
Query: 14 RSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENR 73
R P RV+D+ E++ + ++ RC+ C + GCP++ IP + + + +
Sbjct: 1628 RKPATRVKDWAELSQRLDEDELKYQSARCMDCGVPFCQSDSGCPISNIIPKWNELVFQGQ 1687
Query: 74 DNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVADYA 133
R+AL + N+ P TGRVCP CEG CV+G P+ I +E + D
Sbjct: 1688 ------WRDALNRLLMTNNFPEFTGRVCPAP--CEGACVLGINEQPVGIKSIECAIIDRG 1739
Query: 134 REHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL 193
E G ++ E I R GK VA+IG+GPAGL A +L K G+ VT++E GG+L
Sbjct: 1740 FEMG----WMVPEPPKI-RTGKNVAIIGSGPAGLAAADQLNKAGHNVTVYERADRLGGLL 1794
Query: 194 AYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPK 253
YGIP +L K I+++ + GV+ KT +G +T+ +L ++ DA+ I+TGA +
Sbjct: 1795 MYGIPNMKLDKRIVKRRTDFMAAEGVQFKTGVAIGEDITLVDLKKQNDAVIIATGATVAR 1854
Query: 254 LLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVG--KRVIVIGAGNTAMDAARS 311
L I NL GI+ A EFL + N D + K VIVIG G+T D +
Sbjct: 1855 DLPIKNRNLEGIHFAMEFLHK-NTKSLLDSELADGSYISAKDKHVIVIGGGDTGNDCIGT 1913
Query: 312 ALRLGAEVIIAYR--------RGKED---MTARIEEVQHAKEEGVKFM------FFVNPV 354
++R GA+ +I + RG+++ R+ V + +E + + +
Sbjct: 1914 SVRHGAKSVINFELLPKPPPARGRDNPWPQWPRVYRVDYGHDEVKQHTGKDPREYCIMSE 1973
Query: 355 EFIGDEEGRVKAVKFEKMKPLEERDKR-GKRKIVGTGEYITVEADTVIIAIG-------- 405
EF+ D G+V+ + +++ + +KI G+ ++ AD V++++G
Sbjct: 1974 EFVDDGNGKVRGINTIRVEWTKSASGGWDMKKIEGSQQFF--PADLVLLSMGFLGPEARV 2031
Query: 406 ------QTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGD 459
+ P K + +T PG T++ GVFA GD RG++ ++ + +
Sbjct: 2032 LGDEIEKDPRKNV-KTPPG-------------KYSTNVEGVFAAGDCRRGQSLIVWGINE 2077
Query: 460 GRKAAKAIHEYLSKS 474
GR+AA+ + YL KS
Sbjct: 2078 GRQAAREVDLYLEKS 2092
>pir||T24629 glutamate synthase (NADH) (EC 1.4.1.14) precursor [similarity] -
Caenorhabditis elegans >gi|3879588|emb|CAA90070.1|
(Z49889) contains similarity to Pfam domain: PF00070
(Pyridine nucleotide-disulphide oxidoreductase),
Score=64.4, E-value=9.7e-19, N=3; PF01493 (Domain of
unknown function), Score=261.9, E-value=2.8e-75, N=1;
PF01645 (Conserved region in glutamate synt>
>gi|3880576|emb|CAA90032.1| (Z49868) contains similarity
to Pfam domain: PF00070 (Pyridine nucleotide-disulphide
oxidoreductase), Score=64.4, E-value=9.7e-19, N=3;
PF01493 (Domain of unknown function), Score=261.9,
E-value=2.8e-75, N=1; PF01645 (Conserved region in
glutamate synt>
Length = 2207
Score = 191 bits (480), Expect = 2e-47
Identities = 148/484 (30%), Positives = 237/484 (48%), Gaps = 43/484 (8%)
Query: 14 RSPVERVRDFNEVNLGYTWELA---LRE-AERCLQCPKEYAPCIKGCPVNIDIPGFIRAL 69
R P ER+ D++EV Y +E +RE A RC+ C + GCP+ IP +
Sbjct: 1718 RDPKERLNDWDEV---YDFEAVRSNIREQAARCMDCGVPFCQGHSGCPLGNIIPKW---- 1770
Query: 70 RENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFV 129
N +K R+AL+ + N+ P TGRVCP CEG C +G + I +E +
Sbjct: 1771 --NDFVFKKNWRQALEQLLQTNNFPEFTGRVCPAP--CEGACTLGIGSPAVTIKSIECAI 1826
Query: 130 ADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEP 189
DYA G M+ + GKR+A+IG+GP+GL AA+L K+G+ V ++E +
Sbjct: 1827 IDYAFMQG-----WMKPCKPAFNTGKRIAIIGSGPSGLGAAAQLVKVGHTVVVYERKNRV 1881
Query: 190 GGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGA 249
GG+L YGIP +L K ++ + + L+ GV T+ +G+ V LL+E DAI + TG+
Sbjct: 1882 GGLLRYGIPTMKLDKFVVDRRVSLLEQEGVRFLTNTEIGKHVPADFLLKENDAIIVCTGS 1941
Query: 250 GTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAA 309
T + L + G + G+ A E+L + +A ++ K+VI++G G+TA D
Sbjct: 1942 TTARDLNVEGRDAKGVCFAMEYLEKSQRRRAGDDVSWEGLDPANKKVIILGGGDTATDCI 2001
Query: 310 RSALRLGAEVIIAYRRGKEDMTAR-----------IEEVQHAKEEGVKF------MFFVN 352
++ RLG + + A+ + R I V + EE + + V+
Sbjct: 2002 ATSNRLGCKTVGAFEILPQPGPNRKPENPWPEWPLIFRVDYGHEEAKEMTGSDPRTYSVS 2061
Query: 353 PVEFI--GDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYI-TVEADTVIIAIGQT-P 408
F+ + G E + E+D +G K++ E I T+E D I+A+G P
Sbjct: 2062 TKRFLTTTNAAGITVLTGLEIVDVEWEKDDKGAWKLIEKNETIRTIECDLCILAMGFVGP 2121
Query: 409 NKILWRTTPGLKVREDGTIIVDENLMTS-IPGVFAGGDAIRGEATVILAMGDGRKAAKAI 467
K + LK I+ ++ S + VFA GD RG++ V+ A+ +GR+AA+ +
Sbjct: 2122 EKSVIEQL-NLKTDPRSNILTPKDKYDSDVAKVFAAGDCRRGQSLVVWAIHEGRQAARQV 2180
Query: 468 HEYL 471
EYL
Sbjct: 2181 DEYL 2184
>gb|AAD41676.1|AF082880_2 (AF082880) glutamate synthase small subunit [Clostridium
acetobutylicum]
Length = 490
Score = 189 bits (476), Expect = 5e-47
Identities = 142/487 (29%), Positives = 240/487 (49%), Gaps = 45/487 (9%)
Query: 14 RSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPC-------IKGCPVNIDIPGFI 66
R P ER++D+ E + E + RC+ C + + GCP++ IP +
Sbjct: 18 REPKERLKDYKEFHQRLPLEKQCIQGARCMDCGVPFCQAGVLFSGMVSGCPLHNLIPEW- 76
Query: 67 RALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLE 126
N R A + + N P TGRVCP CE C G G I I + E
Sbjct: 77 -----NDLVYRGKWELAYERLNKTNPFPEFTGRVCPAP--CEAGCTAGLNGPAITIKENE 129
Query: 127 RFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEAL 186
R + D A E+G ++ +KR GK+VAVIG+GP+GL A L K G++VT+FE
Sbjct: 130 RSIIDNAFENGF-----VKANTPLKRTGKKVAVIGSGPSGLAVANTLNKCGHKVTVFERS 184
Query: 187 HEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFIS 246
PGG+L YGIP +L KE++ + + + G++ + VG E+L+E+DA+ ++
Sbjct: 185 DRPGGLLMYGIPNMKLDKEVILRRVHLMAEEGIKFVNNANVGDNYDAKEILDEFDAVVLA 244
Query: 247 TGAGTPKLLKIPG-INLNGIYSANEFLTRINLMKAYKFPEYDTPIVVG--KRVIVIGAGN 303
TGA P+ L+ G N+NGI+ A +FL + N D + K VI+IG G+
Sbjct: 245 TGASQPRDLQAEGRDNVNGIHFAVDFL-KANTKSLLDSDHEDNNYISAKDKNVIIIGGGD 303
Query: 304 TAMDAARSALRLGAEVIIAYRRGKEDMTARIE-----------EVQHAKEEGVKFMFFVN 352
T D ++LR G + ++ + E R E +V + +EE ++ ++ +
Sbjct: 304 TGTDCVATSLRHGCKSVVQFEIMGEPAHERTESNPMPEWPKVLKVDYGQEEFIE-LYGKD 362
Query: 353 PVEFI-------GDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIG 405
P E++ D++G +++V K++ ++ D G A+ +++A+G
Sbjct: 363 PREYLTTVTAVHSDKDGNLESVDTVKVE-WKKGDNGRMFPAHVEGSEKNWPAELILLAMG 421
Query: 406 QTPNKILWRTTPGLKVREDGTIIV-DENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAA 464
T ++ + G++ E + + + MT++P VFA GDA RG++ V+ A+ +G A
Sbjct: 422 FTGSEDYLKNAFGIESDERSNVKAGNVDFMTNVPKVFATGDARRGQSLVVTAISEGIAAG 481
Query: 465 KAIHEYL 471
A+ ++L
Sbjct: 482 IAVDKFL 488
>pir||G72689 probable glutamate synthase small chain APE0935 - Aeropyrum pernix
(strain K1) >gi|5104604|dbj|BAA79919.1| (AP000060) 337aa
long hypothetical glutamate synthase small chain
[Aeropyrum pernix]
Length = 337
Score = 183 bits (460), Expect = 4e-45
Identities = 111/325 (34%), Positives = 179/325 (54%), Gaps = 10/325 (3%)
Query: 154 GKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELKK 213
GK V++IGAGPAGL A L G+EV +++ + EPGG++ +GIP+ R+PK+ +RK +++
Sbjct: 14 GKTVSIIGAGPAGLGAAGFLRCRGHEVVVYDMMPEPGGMMMFGIPDDRIPKDNIRKSVRE 73
Query: 214 LKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLT 273
L G I ++ VGR +++ ++++ DA+ I+TG P+ L PG +L + A ++L
Sbjct: 74 LVEGGARIILNNKVGRDISLEDIIKASDAVLIATGTWKPRRLGAPGEDLPWVLPAADWLV 133
Query: 274 RINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL-----RLGAE-VIIAYRRGK 327
+++ + P P VG R++V+G G TA DA L + G E V+++YRR +
Sbjct: 134 EVHMARYGYLPWAKVP-KVGGRILVVGGGLTAADAVHVPLTYPEFKDGVEKVVLSYRRTR 192
Query: 328 EDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIV 387
+ R E + + G + P+ F EEG K VKF +M+ L+ D + +
Sbjct: 193 DYAPMRKNEFERLIKMGAEAWELTQPIAFY--EEGGRKVVKFVRME-LKASDSGRPKPVP 249
Query: 388 GTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFAGGDAI 447
G E D ++AIG+ P G+++ DGTI DEN MT+ GVFA GD
Sbjct: 250 IEGSEFEAEFDWALLAIGEVPTPPFNNGCCGIELNPDGTIKTDENFMTTRKGVFASGDVR 309
Query: 448 RGEATVILAMGDGRKAAKAIHEYLS 472
G + + A+ G AA+ +H YL+
Sbjct: 310 HGPSLIGKALKSGLDAAQKVHLYLT 334
>gb|AAF46461.2| (AE003446) Reg-3 gene product [Drosophila melanogaster]
Length = 1031
Score = 182 bits (456), Expect = 1e-44
Identities = 142/451 (31%), Positives = 231/451 (50%), Gaps = 39/451 (8%)
Query: 35 ALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLP 94
AL EA RCL+C APC K CP +DI FI ++ K A K I++ N L
Sbjct: 74 ALEEAARCLKCAD--APCQKSCPTQLDIKSFITSIAN------KNFYGAAKAIFSDNPLG 125
Query: 95 AITGRVCPQEDQCEGVC-VVGKVGDPINIGKLERFVADYAREHGIDDELLMEEIRGIKRN 153
G VCP D C G C + PINIG L++F + ++ G+ +
Sbjct: 126 LTCGMVCPTSDLCVGGCNLQASEAGPINIGGLQQFATEVFKKMGVRQRRTPQA--EANPL 183
Query: 154 GKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEFRLPKEILRKELK 212
+++A++G GPA L+CA LA++GY +VTI+E GG+ A IP++RLP + + E+
Sbjct: 184 SQKIALVGGGPASLSCATFLARLGYRDVTIYERRSYLGGLSAAEIPQYRLPIDAVNFEID 243
Query: 213 KLKFLGVEIKTDHIVG-RTVTIPELLEE-YDAIFISTGAGTPKLLKI-PGIN-LNGIYSA 268
++ LGV I+T +G + +TI LL +DA+F+ G PKL I G+ NG Y++
Sbjct: 244 LVRDLGVRIETGRSLGTKDLTIQGLLSTGHDAVFVGIGLPEPKLNPIFAGLQPSNGFYTS 303
Query: 269 NEFLTRIN---------LMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGA-E 318
FL ++ A P+ + VIV+GAG+TA D A SALR GA
Sbjct: 304 KNFLPLVSDGSKPGLCACKAAAGLPK------LHGNVIVLGAGDTAFDCATSALRCGARR 357
Query: 319 VIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEER 378
V + +R+G + A EEV+ A++E + + +++P + I ++G + A++F + + E
Sbjct: 358 VFVVFRKGSSGIRAVPEEVELARDERCELLPYLSPRKVI-VKDGLITAMEFCRTEQNEND 416
Query: 379 DKRGKRKIVGTGEYITVEADTVIIAIGQ-TPNKILWRTTPGLKVREDGTIIVDENLMTSI 437
+ + + ++A+ VI A G ++ + L+ R + ++ + +S+
Sbjct: 417 E-----WVEDEEQTQRLKANFVISAFGSGLEDQDVKAALAPLQFRGELPVVDRVTMQSSV 471
Query: 438 PGVFAGGDAIRGEATVILAMGDGRKAAKAIH 468
VF GGD T + ++ DG+ AA +IH
Sbjct: 472 KQVFLGGDLAGVANTTVESVNDGKVAAWSIH 502
>pir||D81416 glutamate synthase (NADPH) (EC 1.4.1.13) small chain Cj0009
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967514|emb|CAB72502.1| (AL139074) glutamate
synthase (NADPH) small subunit [Campylobacter jejuni]
Length = 481
Score = 181 bits (455), Expect = 1e-44
Identities = 147/495 (29%), Positives = 242/495 (48%), Gaps = 52/495 (10%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPC-------IKGCPVN 59
+R+ + +P ER+ ++ E + + + RC+ C + GCP+N
Sbjct: 11 KRMDFKKIAPKERILNYKEFTIPLDKKEQEVQGGRCMDCGVAFCHTGVMSEGKDVGCPLN 70
Query: 60 IDIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDP 119
IP + N R +EA + + N P TGRVCP CE CV G
Sbjct: 71 NLIPEW------NDLVYRSLWKEAYERLDLTNPFPEFTGRVCPAP--CEDSCVCAINGVS 122
Query: 120 INIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYE 179
++I E + + A + E L+ + + NGK++AVIG+GPAGL CA L +GY+
Sbjct: 123 VSIKNNELSIIENAFK-----ENLVRVNKPKQYNGKKIAVIGSGPAGLACANTLNSLGYK 177
Query: 180 VTIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEE 239
V++FE + GG+L YGIP+ +L K I+++ + LK G+E K + + + +LL+E
Sbjct: 178 VSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIEFKVNENIDSKDKVSKLLKE 237
Query: 240 YDAIFISTGAGTPKLLKIPGINLNGIYSANEFLTR--INLMKAYKFPEYDTPIVVGKRVI 297
+DA+ + TGA P L I G L G+ A +FLT+ L+K K + GK V+
Sbjct: 238 FDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKTLLKTGK----GADMAKGKNVL 293
Query: 298 VIGAGNTAMDAARSALRLGAEVIIAYRRGKE-----------DMTARIEEVQHAKEEGVK 346
VIG+G+T++D A R GA+ I+ + R + + A I + EE +
Sbjct: 294 VIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNPWPLKADIFTTDYGLEEAIA 353
Query: 347 FMFFVNPVE-------FIGDEEGRVKAVKFEKMKPLEERDKRGKR-KIVGTGEYITVEAD 398
++ +P E F+G V+ + L+ K GK + + T +AD
Sbjct: 354 -VYGKDPREYQKMTKKFLGKTH-----VEGVEANDLKREFKEGKAINVEISNSKKTYKAD 407
Query: 399 TVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMG 458
V++A+G + + G+K+ E I EN T+ +FA GDA +G++ V+ A+
Sbjct: 408 LVLLAMGFSGCEEAISKNFGVKLDEKNNIST-ENFQTTHKKIFACGDARKGQSLVVWAIK 466
Query: 459 DGRKAAKAIHEYLSK 473
DG + A ++H+ L+K
Sbjct: 467 DGIECALSLHQNLAK 481
>pir||T28635 glutamate synthase (NADH) (EC 1.4.1.14) - malaria parasite
(Plasmodium falciparum) >gi|3036869|emb|CAA76602.1|
(Y17045) NAD(P)H-dependent glutamate synthase [Plasmodium
falciparum]
Length = 3097
Score = 175 bits (439), Expect = 1e-42
Identities = 132/413 (31%), Positives = 207/413 (49%), Gaps = 47/413 (11%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALR------EAERCLQC--PKEYAPCIKG--C 56
ER+ P + RV D++E+ + + L +A RC+ C P + P G C
Sbjct: 2509 ERLSHPLKDISSRVLDYSEITVPINVKSKLHNQLLKTQASRCVDCGTPTCHYPNSSGGGC 2568
Query: 57 PVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKV 116
P+ I + + EN ++AL+ + N+ P ITGRVCP CE CV+
Sbjct: 2569 PLGNRIFDWNNLVYENE------WKKALERLLDTNNFPEITGRVCPAP--CEDACVLSIN 2620
Query: 117 GDPINIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKM 176
++I +E + +Y G + + I I R GK+VA++G+GPAGLT A +L K
Sbjct: 2621 EKAVSIKFIELSIIEY----GFIKKWIQPMIP-ISRTGKKVAIVGSGPAGLTAAQQLNKA 2675
Query: 177 GYEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPEL 236
G+EVT+FE GG+L GIP RL K+IL + L +K G+ +K + VG +T+ +L
Sbjct: 2676 GHEVTVFEKDEYFGGLLMNGIPNVRLDKKILERRLILMKKEGILMKNNVNVGVDITLSDL 2735
Query: 237 LEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVG-KR 295
++EYDAI ++TG P+ L IPG NLN IY A +FLT + D I V K
Sbjct: 2736 VKEYDAILLATGYKIPRKLDIPGANLNNIYFAMDFLTSCQISLTKSDMTDDNYIDVSEKH 2795
Query: 296 VIVIGAGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEE-----------VQHAKEEG 344
VI++G G TA+D A+R+GA ++ + R +E + E V+++ EE
Sbjct: 2796 VIILGGGKTAVDCISLAIRMGASSVLQFTR-QEILPMNTSEYWWPGLKNIFKVEYSHEEA 2854
Query: 345 VKFM------FFVNPVEFIGDEE-----GRVKAVKFEKMKPLEERDKRGKRKI 386
+ F V +EFI + ++A++ + K L+ K+ + +
Sbjct: 2855 IVIQGRDPREFCVRSLEFIPSNKDPKRVSGIRAIRVKLKKNLKSEMKQNNKML 2907
>gi|11421673 dihydropyrimidine dehydrogenase [Homo sapiens]
Length = 465
Score = 165 bits (413), Expect = 1e-39
Identities = 135/404 (33%), Positives = 220/404 (54%), Gaps = 29/404 (7%)
Query: 86 VIWACNSLPAITGRVCPQEDQCEGVCVVGKVGD-PINIGKLERFVADYAREHGID---DE 141
+I++ N L G VCP D C G C + + PINIG L++F + + I +
Sbjct: 1 MIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNP 60
Query: 142 LLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEF 200
L + + ++A+ GAGPA ++CA+ LA++GY ++TIFE GG+ IP+F
Sbjct: 61 SLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQF 120
Query: 201 RLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPEL----LEE--YDAIFISTGAGTP-K 253
RLP +++ E++ +K LGV+I I G+++++ E+ L+E Y A FI G P K
Sbjct: 121 RLPYDVVNFEIELMKDLGVKI----ICGKSLSVNEMTLSTLKEKGYKAAFIGIGLPEPNK 176
Query: 254 LLKIPGINLN-GIYSANEFLTRINLMKAYKFPEYDTPI-VVGKRVIVIGAGNTAMDAARS 311
G+ + G Y++ +FL + +P+ + VIV+GAG+TA D A S
Sbjct: 177 DAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCACHSPLPSIRGVVIVLGAGDTAFDCATS 236
Query: 312 ALRLGA-EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFE 370
ALR GA V I +R+G ++ A EE++ AKEE +F+ F++P + I + GR+ A++F
Sbjct: 237 ALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVI-VKGGRIVAMQFV 295
Query: 371 KMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQ--TPNKILWRTTPGLKVREDGTII 428
+ E+D+ GK + + ++AD VI A G + K+ +P +K G
Sbjct: 296 R----TEQDETGKWN-EDEDQMVHLKADVVISAFGSVLSDPKVKEALSP-IKFNRWGLPE 349
Query: 429 VD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
VD E + TS VFAGGD + T + ++ DG++A+ IH+Y+
Sbjct: 350 VDPETMQTSEAWVFAGGDVVGLANTTVESVNDGKQASWYIHKYV 393
>dbj|BAA75930.1| (AB024708) glutamine 2-oxoglutarate aminotransferase small subunit
[Corynebacterium glutamicum]
Length = 506
Score = 161 bits (404), Expect = 1e-38
Identities = 144/501 (28%), Positives = 232/501 (45%), Gaps = 77/501 (15%)
Query: 12 PERSPVE-RVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALR 70
P PV R+ D++EV +A RC+ C + C +GCP+ IP + +R
Sbjct: 15 PAHRPVPLRLMDYSEVYEKAPAGQIEEQAARCMDCGVPF--CHEGCPLGNIIPEWNDLVR 72
Query: 71 ENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVA 130
+ R +EA + A N+ P TGR+CP CEG CV+G D + I +E +
Sbjct: 73 QGR------WKEAYDRLHATNNFPEFTGRLCPAP--CEGACVLGINDDSVTIKNVELEIV 124
Query: 131 DYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPG 190
+ A G ++ + G VAV+G+GPAGL A +L + G+ VT+FE G
Sbjct: 125 EKAFREG-----WVQPVVASMSTGLSVAVVGSGPAGLAAAQQLTRAGHSVTVFERDDRLG 179
Query: 191 GVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAG 250
G++ YG+PE+++ + + +++++ G T VG + E L +DAI ++TG
Sbjct: 180 GLMRYGVPEYKMENRWIDRRIEQMEAEG----TTFQVGTSPRAAE-LALFDAILLATGTP 234
Query: 251 TPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYD---TPI-VVGKRVIVIGAGNTAM 306
+ L +PG +LNGI++A ++LT N + E D +PI GK+V++IG G+T
Sbjct: 235 VARELSVPGHDLNGIHAAMDYLTAQN-----RINEGDGEVSPINAKGKKVVIIGGGDTGT 289
Query: 307 DAARSALRLGAEVI--------IAYRRGKE---DMTARIEEVQHAKEEGVKFM------- 348
D +ALR GAE + ++R M + A EEG +
Sbjct: 290 DCFGTALRQGAESVTQFDIRPRAPFQRADSTPWPMYPNLFRTATAHEEGEYIITGDESAD 349
Query: 349 --------------------FFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVG 388
F VN VEF G+ G V + +++ + GKR+ +
Sbjct: 350 EIAALGLAERAAGSTLGERKFAVNTVEFHGN-NGHVTGLTGNQIRVV-----NGKREPI- 402
Query: 389 TGEYITVEADTVIIAIGQT-PNKILWRTTPGLKVREDGTIIVDENLMTSIPG-VFAGGDA 446
G EAD V++A+G T + G+ + G I+ D + V+ GD
Sbjct: 403 EGTEFPFEADLVLVALGFTGAEQGGLAHELGVGFDDRGRILRDSEYRSPTNSRVYIAGDN 462
Query: 447 IRGEATVILAMGDGRKAAKAI 467
RG++ ++ A+ +GR A AI
Sbjct: 463 GRGQSLIVWAIAEGRACAAAI 483
>gb|AAG13082.1| (U84760) DsrL [Allochromatium vinosum]
Length = 654
Score = 161 bits (402), Expect = 2e-38
Identities = 138/476 (28%), Positives = 217/476 (44%), Gaps = 70/476 (14%)
Query: 40 ERCLQCPK---EYAPCIKGCPVNIDIPGFIRALRENRDNPRKA--VREALKVIWACNSLP 94
+R +CP + PC CP DI G+++ +R P+ A + N P
Sbjct: 35 DRSHKCPTYVHKTPPCQGSCPSGEDIRGWLQIVRGMEKPPQGMDWQEYAFRRSTDANPFP 94
Query: 95 AITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVADYAREHGIDDELLMEEIRGIKRNG 154
A+ GRVCP C+ C ++ D + I +E+F+ D A +G E + G
Sbjct: 95 AMMGRVCPA--PCQDGCNRNELEDFVGINSVEQFIGDTAIANGYTFEAPELD------TG 146
Query: 155 KRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELKKL 214
KR+A++G GPAGL A +L + G+ TIFEA GG+ +GIP +R+P++ L E++++
Sbjct: 147 KRIAIVGGGPAGLAAAYQLRRKGHSCTIFEANDGLGGMFRFGIPGYRVPRDKLDAEIQRI 206
Query: 215 KFLG-VEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLT 273
+G VE++ +G VT+ +L ++YDAI + G + + L +PG +T
Sbjct: 207 LDMGRVEVRLKTRIGTDVTVEQLEKDYDAILWAIGCQSGRGLPVPGWE-----GTPNCVT 261
Query: 274 RINLMKAYKFPEYDTPIVVGKRVIVIGAGNT----------------------------- 304
+ +KA F E + GK V+ +G G+T
Sbjct: 262 GVAFLKA--FNEGRMKVTAGK-VVCVGGGDTSIDVVSVARRLGHVNKSNPNELPETVIRD 318
Query: 305 ---AMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEE 361
A DAA +A GAEV + ++ MTA EV A EGV + V PVE I D
Sbjct: 319 GYVAHDAASAAAAQGAEVTLTSLFTRDKMTASEHEVDDATREGVTILDGVMPVEVIKDAN 378
Query: 362 GRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKV 421
GR +K + R + GT +EAD ++ AIGQ + GL+
Sbjct: 379 GRAIGLKVADCTMTDGR----PTPVEGTER--VLEADLIVSAIGQGGD------LSGLEQ 426
Query: 422 REDGTIIVDENLMTSIPGV---FAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKS 474
++G ++D + +PG F GD IR + A+G AA +I Y+ ++
Sbjct: 427 LDNGRGLMDSDKFYQVPGKAGHFVAGDIIRPH-LLTTAIGQAWIAADSIDAYVMQA 481
>dbj|BAA83927.1| (AB024555) GLTB [Bacillus halodurans]
Length = 201
Score = 97.1 bits (238), Expect = 4e-19
Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 21/204 (10%)
Query: 7 ERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIK--------GCPV 58
+R P++ P ER +++ E L ++ RC+ C + GCPV
Sbjct: 11 KRETPPKKDPFERSKNWQEFTLLMPESALRQQGARCMDCGVPFCQTGTSMDGSGEIGCPV 70
Query: 59 NIDIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGD 118
IP + N R +EAL+ + N+ P TGRVCP CEG C V D
Sbjct: 71 YNLIPEW------NDLVYRGHWKEALERLHKTNNFPEFTGRVCPAP--CEGSCTVAISDD 122
Query: 119 PINIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY 178
+ I +E + + + G ++ R R GK+VAV+G+GPAGL AA+L K G+
Sbjct: 123 AVAIKSMEFHIVERGFQEGW---IVPNPPRS--RTGKKVAVVGSGPAGLAAAAQLNKAGH 177
Query: 179 EVTIFEALHEPGGVLAYGIPEFRL 202
VT+FE GG+L YGIP+ +L
Sbjct: 178 WVTVFEREDRIGGLLTYGIPDVKL 201
>pir||D71016 probable thioredoxin reductase - Pyrococcus horikoshii
>gi|3257849|dbj|BAA30532.1| (AP000006) 336aa long
hypothetical thioredoxin reductase [Pyrococcus
horikoshii]
Length = 336
Score = 88.2 bits (215), Expect = 2e-16
Identities = 97/338 (28%), Positives = 144/338 (41%), Gaps = 59/338 (17%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAY--------GIPEFRLPKEILR 208
V +IGAGPAG T A A+ G + I + GG +A G PE E+ +
Sbjct: 26 VIIIGAGPAGYTAAIYAARFGLDTIIITK--DLGGNMAITDLIENYPGFPEGISGSELSK 83
Query: 209 KELKKLKFLGVEIKTDHIVG-------------RTVTIPELLEEYDA--IFISTGAGTPK 253
K ++K GVE+ D ++ V +EY A I I+ GA P+
Sbjct: 84 KMYDQVKKYGVEVIIDEVIRIDPAECAYYEGPCNFVVKTANGKEYKAKTIIIAVGA-EPR 142
Query: 254 LLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL 313
L +PG EF R A D P+ VGK VIV+G GNTA+ A
Sbjct: 143 KLNVPG--------EKEFTGRGVSYCA----TCDGPLFVGKEVIVVGGGNTALQEALYLH 190
Query: 314 RLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMK 373
+G +V + +RR K +++ K+ G+ + E G +V++V + +K
Sbjct: 191 SIGVKVTLVHRRDKFRADKILQD--RFKQAGIPAILNTVVTEIKG--TNKVESVVLKNVK 246
Query: 374 PLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENL 433
TGE + + D V I IG P K + G+ E G I VD +
Sbjct: 247 ---------------TGETVEKKVDGVFIFIGYEP-KTDFVKHLGI-TDEYGYIPVDMYM 289
Query: 434 MTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
T +PG+FA GD + +A+G G AA + E++
Sbjct: 290 RTKVPGIFAAGDITNVFKQIAVAVGQGAIAANSAKEFI 327
>pir||D75116 thioredoxin reductase (trxb) PAB0500 - Pyrococcus abyssi (strain
Orsay) >gi|5458156|emb|CAB49645.1| (AJ248285)
thioredoxin reductase (trxB) [Pyrococcus abyssi]
Length = 345
Score = 83.1 bits (202), Expect = 6e-15
Identities = 95/338 (28%), Positives = 141/338 (41%), Gaps = 59/338 (17%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAY--------GIPEFRLPKEILR 208
V +IGAGPAG T A A+ G + I + GG +A G PE E+ +
Sbjct: 35 VIIIGAGPAGYTAAIYAARFGLDTIIITK--DLGGNMAITDLIENYPGFPEGISGSELAK 92
Query: 209 KELKKLKFLGVEIKTDHIVGRTVTIPELLE-------------EYDA--IFISTGAGTPK 253
+ + +K GV++ D +V E EY I I+ GA P+
Sbjct: 93 RMYEHVKKYGVDVIFDEVVRIDPAECAYYEGPCQFEVKTANGKEYKGKTIIIAVGA-EPR 151
Query: 254 LLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL 313
L +PG EF R A D P+ VGK VIV+G GNTA+ A
Sbjct: 152 KLHVPG--------EKEFTGRGVSYCA----TCDGPLFVGKEVIVVGGGNTALQEALYLH 199
Query: 314 RLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMK 373
+G +V + +RR K +++ K+ G+ + E G +V++V + +K
Sbjct: 200 SIGVKVTLVHRRDKFRADKILQD--RLKQAGIPTILNTVVTEIRG--TNKVESVVLKNVK 255
Query: 374 PLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENL 433
TGE + D V I IG P K + G+ E G I VD +
Sbjct: 256 ---------------TGETFEKKVDGVFIFIGYEP-KTDFVKHLGI-TDEYGYIKVDMYM 298
Query: 434 MTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
T +PG+FA GD + +A+G G AA + E++
Sbjct: 299 RTKVPGIFAAGDITNVFKQIAVAVGQGAIAANSAKEFI 336
>emb|CAB60604.1| (AL132865) cDNA EST yk60c5.5 comes from this gene [Caenorhabditis
elegans]
Length = 458
Score = 83.1 bits (202), Expect = 6e-15
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 22/175 (12%)
Query: 147 IRGIKRNGK-RVAVIGAGPAGL-TCAAELAKMGYEVTIFEALHEPGGVLAYGI-PEFRLP 203
++ K +GK R+A++G+GPAG+ C L K + V +FE P G++ YG+ P+ +
Sbjct: 17 LKSRKLSGKPRLAIVGSGPAGMFACNGLLRKSNFSVDVFENSPVPFGLVRYGVAPDHQEV 76
Query: 204 KEILR-------KELKKLK-FLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLL 255
K ++ K ++LK F V I GR +T EL YDA+ ++ G+ + L
Sbjct: 77 KNVINTFDAMFEKNRERLKLFCNVNI------GRDITFDELTRGYDAVLLAYGSYKTRTL 130
Query: 256 KIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAAR 310
IPG + + + S +EF+ N P TP + V+++G GN A+D AR
Sbjct: 131 DIPGSDASNVISGSEFVGWYN-----GVPNASTPDLTTSNVVIVGNGNVALDCAR 180
>emb|CAC12113.1| (AL445066) probable thioredoxin reductase [Thermoplasma
acidophilum]
Length = 319
Score = 80.8 bits (196), Expect = 3e-14
Identities = 90/326 (27%), Positives = 137/326 (41%), Gaps = 46/326 (14%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYG--IPEFRLPKEILRKELKKL 214
V ++GAG AG + A A+ G+ V I + GG+ A + + K I+ EL KL
Sbjct: 19 VVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAPLVENYLGFKSIVGSELAKL 77
Query: 215 KF----------LGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNG 264
GVE+++ I + Y A ++ GT K G+
Sbjct: 78 FADHAANYAKIREGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTH--KHLGVKGES 135
Query: 265 IYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEV-IIAY 323
Y + + Y F GKRV+ IG GN+ AA S V II Y
Sbjct: 136 EYFGKG-TSYCSTCDGYLFK--------GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEY 186
Query: 324 RRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGK 383
A ++E+ K+ + ++ E +GD + +V VK++
Sbjct: 187 MPKYMCENAYVQEI---KKRNIPYIMNAQVTEIVGDGK-KVTGVKYKDRT---------- 232
Query: 384 RKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFAG 443
TGE +E D V I +G P + + G+K+ E G I+VD TS+PGV+A
Sbjct: 233 -----TGEEKLIETDGVFIYVGLIPQTSFLKDS-GVKLDERGYIVVDSRQRTSVPGVYAA 286
Query: 444 GDAIRGE-ATVILAMGDGRKAAKAIH 468
GD G A + A+GDG KAA +++
Sbjct: 287 GDVTSGNFAQIASAVGDGCKAALSLY 312
>sp|O06465|AHPF_XANCH ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi|2098747|gb|AAC45426.1|
(U94336) alkyl hydroperoxide reductase subunit F
[Xanthomonas campestris]
Length = 530
Score = 77.6 bits (188), Expect = 3e-13
Identities = 62/196 (31%), Positives = 93/196 (46%), Gaps = 26/196 (13%)
Query: 284 PEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAK-- 341
P D P+ GKRV VIG GN+ ++AA + A V + + D R +EV K
Sbjct: 345 PHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVAHVTLV----EFDDKLRADEVLQRKLR 400
Query: 342 -EEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTV 400
V+ + E +GD +K+ L +D+ G G+ +E + V
Sbjct: 401 SLHNVRIITSAQTTEVLGDG---------QKVTGLVYKDRTG-------GDIQHIELEGV 444
Query: 401 IIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFAGGDAIR-GEATVILAMGD 459
+ IG PN R T L R G IIVD+ T +PGVFA GDA +++AMG+
Sbjct: 445 FVQIGLLPNTEFLRGTVALSPR--GEIIVDDRGQTDVPGVFAAGDATTVPYKQIVIAMGE 502
Query: 460 GRKAAKAIHEYLSKSA 475
G KAA + ++L +++
Sbjct: 503 GSKAALSAFDHLIRTS 518
>gb|AAD29664.1|AF124757_24 (AF124757) thioredoxin reductase [Zymomonas mobilis]
Length = 318
Score = 77.6 bits (188), Expect = 3e-13
Identities = 89/344 (25%), Positives = 143/344 (40%), Gaps = 66/344 (19%)
Query: 156 RVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAY-----GIPEFRLPKE---IL 207
RV ++G+GPAGLT A A+ G + + L +PGG L P FR P + ++
Sbjct: 9 RVFILGSGPAGLTAAIYAARAGLNPIVAQGL-QPGGQLTITTEVENFPGFREPIQGPWLM 67
Query: 208 RKELKKLKFLGVEIKTDHIVG--------RTVTIPELLEEYDAIFISTGA-----GTPKL 254
+ + + +G ++ D I R + + D++ ISTGA G
Sbjct: 68 EEMQAQAENVGAKLVWDIITSVDFSQRPYRLMGDGGQVYLADSLIISTGAQARWLGLESE 127
Query: 255 LKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALR 314
+ G ++ + + F R GK+V+VIG GNTA++ A
Sbjct: 128 TALRGKGISACATCDGFFFR------------------GKKVVVIGGGNTAVEEALYLTN 169
Query: 315 LGAEVIIAYRRGKEDMTARIEEVQHAK---EEGVKFMFFVNPVEFIGDEEGRVKAVKFEK 371
EV + +RR + R E++ + +K + EFI E+ + AVK +
Sbjct: 170 HSPEVTLIHRRD----SLRAEKIMQKRLLANPKIKIRWNSEVAEFIAGEDSALSAVKLKD 225
Query: 372 MKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTI-IVD 430
K TGE +E + IAIG P L++ LK+ ++G I +
Sbjct: 226 TK---------------TGEESLLETEGAFIAIGHKPATELFQ--GHLKLDDEGYIEVTP 268
Query: 431 ENLMTSIPGVFAGGDAI-RGEATVILAMGDGRKAAKAIHEYLSK 473
TSI G+FA GD + + + A G G AA +L +
Sbjct: 269 GTTQTSIKGIFACGDVMDKHYRQAVTAAGTGCMAALEAERFLGE 312
>dbj|BAB07290.1| (AP001519) thioredoxin reductase (NADPH) [Bacillus halodurans]
Length = 315
Score = 77.3 bits (187), Expect = 4e-13
Identities = 91/335 (27%), Positives = 139/335 (41%), Gaps = 50/335 (14%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAY-----GIPEFR--LPKEILRK 209
V + GAGPAG+T A ++ + E PGG +A P F L E+ K
Sbjct: 10 VVIAGAGPAGMTAAVYTSRANLSTVMVER-GVPGGQMANTEDVENYPGFDHILGPELSTK 68
Query: 210 ELKKLKFLGVE-----IKTDHIVGRTVTIPELLEEYDA--IFISTGAGTPKLLKIPGINL 262
+ K G E IK G + +EY A + ++TGA KL
Sbjct: 69 MFEHAKKFGAEYAYGDIKEIIDQGDLKLVKAGNKEYKARAVIVATGAEYKKL-------- 120
Query: 263 NGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEVIIA 322
G+ E R A D GK ++V+G G++A++ A R ++V I
Sbjct: 121 -GVPGEKELSGRGVSYCAV----CDGAFFKGKELVVVGGGDSAVEEAVYLTRFASKVTII 175
Query: 323 YRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRG 382
+RR + + A+ Q A + + + V+ I +G+V +V E K
Sbjct: 176 HRR--DQLRAQKILQQRAFDNDKIEFIWDHVVKQINGTDGKVSSVTIEHAK--------- 224
Query: 383 KRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVRED-GTIIVDENLMTSIPGVF 441
TGE + D V I IG P L L + D G I+ +E + TS+PG+F
Sbjct: 225 ------TGEQQDFKTDGVFIYIGMLP---LNEAVKNLNILNDEGYIVTNEEMETSVPGIF 275
Query: 442 AGGDA-IRGEATVILAMGDGRKAAKAIHEYLSKSA 475
A GD + ++ A GDG AA+ + Y+ + A
Sbjct: 276 AAGDVREKSLRQIVTATGDGSLAAQNVQHYIEELA 310
>pir||C75513 probable ferredoxin/ferredoxin--NADP reductase - Deinococcus
radiodurans (strain R1)
>gi|6458182|gb|AAF10073.1|AE001908_8 (AE001908)
ferredoxin/ferredoxin--NADP reductase, putative
[Deinococcus radiodurans]
Length = 479
Score = 75.7 bits (183), Expect = 1e-12
Identities = 97/384 (25%), Positives = 152/384 (39%), Gaps = 94/384 (24%)
Query: 156 RVAVIGAGPAGLTCAAELAKMG---YEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELK 212
RVAVIG+GP+G+ A L K EV +++ L P G++ YG+ L + + K +
Sbjct: 38 RVAVIGSGPSGIYAAEALLKQTEFPVEVDVYDRLPTPYGLVRYGVAPDHLTIKSVTKGFE 97
Query: 213 K------LKFLG-VEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGI 265
K ++FLG VE GR ++ + YDA+ + GA + + L IPG +L G
Sbjct: 98 KTLSDPRVRFLGNVEF------GRELSAEDARAHYDAVMYTVGASSDRRLNIPGEDLQGS 151
Query: 266 YSANEFLTRINLMKAYKFPEYDT--PIVVGKRVIVIGAGNTAMDAARSALRLGAE----- 318
SA EF+ N P+ T ++ + V VIG GN A+D +R + E
Sbjct: 152 MSATEFVAWYN-----GHPDAATREMLLSAEGVAVIGVGNVALDVSRILAKTVNELRGSD 206
Query: 319 ----------------VIIAYRRGKEDMTARIEEVQHAKE-EGVKFMFFVNPVEFIGDEE 361
+ I RRG +E++ E G + + V+ +EE
Sbjct: 207 IAPHALPVLERSSVKDIYILGRRGPAQAAFTTKELREFGELAGAEPVVKPAEVQLREEEE 266
Query: 362 GR----VKAVKFEKMKPLEERDKRGKRK-------------------------------- 385
+ VK E ++ R + GK +
Sbjct: 267 AQVTDNVKKKNIEVLRDFAVRTQEGKERRVHLRFLVSPVEILDDGEGRVAGLKVERNRLD 326
Query: 386 ----IVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVRE-DGTIIVDENLMTSIPGV 440
VGTGEY T+ V+ ++G + PG+ + G I +E + PG
Sbjct: 327 EQGNAVGTGEYETLPVQLVLRSVGYRGVAL-----PGVPFDDRRGVIPNEEGRVQGRPGE 381
Query: 441 FAGGDAIRGEATVILAMGDGRKAA 464
+ G RG + V+ G RK A
Sbjct: 382 YTAGWIKRGPSGVV---GTNRKDA 402
>pir||A75330 thioredoxin reductase - Deinococcus radiodurans (strain R1)
>gi|6459771|gb|AAF11534.1|AE002036_5 (AE002036)
thioredoxin reductase [Deinococcus radiodurans]
Length = 325
Score = 75.7 bits (183), Expect = 1e-12
Identities = 96/347 (27%), Positives = 144/347 (40%), Gaps = 76/347 (21%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAY--------GIPEFRLPKEILR 208
V +IG GPAGLT A + I E PGG +A+ G PE E+ +
Sbjct: 11 VVIIGGGPAGLTAAIYTGRAQLSTLILEK-GMPGGQIAWSEEVENFPGFPEPIAGMELAQ 69
Query: 209 KELKKLKFLGVEIKTDHIVG---------RTVTIPELLEEY--DAIFISTGAGTPKLLKI 257
+ ++ + G +++ D + G T+ EY A+ ++TGA P+ L I
Sbjct: 70 RMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGAD-PRKLGI 128
Query: 258 PGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGA 317
PG + + T YK GK+V+VIG G+ A++ +
Sbjct: 129 PGEDNFWGKGVSTCATCDGFF--YK----------GKKVVVIGGGDAAVEEGMFLTKFAD 176
Query: 318 EVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNP-VEFIGD---EE----GRVKAVKF 369
EV + +RR T R +V A+ F NP ++FI D EE V VK
Sbjct: 177 EVTVIHRRD----TLRANKVAQARA-------FANPKMKFIWDTAVEEIQGADSVSGVKL 225
Query: 370 EKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIV 429
+K TGE + D V I IG PN + T + +R+DG + V
Sbjct: 226 RNLK---------------TGEVSELATDGVFIFIGHVPNTAFVKDT--VSLRDDGYVDV 268
Query: 430 DENLMTSIPGVFAGGDA----IRGEATVILAMGDGRKAAKAIHEYLS 472
+ + T+IP +FA GD R AT ++G G +AA L+
Sbjct: 269 RDEIYTNIPMLFAAGDVSDYIYRQLAT---SVGAGTRAAMMTERQLA 312
>sp|P52213|TRXB_CLOLI THIOREDOXIN REDUCTASE (TRXR) >gi|2117556|pir||S63990 thioredoxin
reductase (NADPH) (EC 1.6.4.5) - Clostridium litorale
>gi|1171125|gb|AAC43575.1| (U24268) thioredoxin
reductase [Clostridium litorale]
Length = 315
Score = 75.7 bits (183), Expect = 1e-12
Identities = 90/336 (26%), Positives = 143/336 (41%), Gaps = 50/336 (14%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAY--------GIPEFRLPKEILR 208
+A+IG+GPAGL A A+ + + E + G ++ +PE P I R
Sbjct: 7 IAIIGSGPAGLAAALYGARAKMKTLLLEGMKVGGQIVITHEVANYPGSVPEATGPSLIGR 66
Query: 209 KELKKLKFLGVEIKTDHIVGRTVT-----IPELLEEYDA--IFISTGAGTPKLLKIPGIN 261
E ++++ G E D+IV T + EY A + ++TGA +PKL PG
Sbjct: 67 ME-EQVEEFGAERVMDNIVDVDFTDKIKVLKGAKGEYKAKAVIVATGA-SPKLAGCPG-- 122
Query: 262 LNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEVII 321
+ LT + D V VIG G+TA++ A + +V I
Sbjct: 123 -------EKELTGKGVSYC---ATCDADFFEDMEVFVIGGGDTAVEEAMFLTKFARKVTI 172
Query: 322 AYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKR 381
+RR + I+E + K E + FM+ E GD G V++ F+ + E
Sbjct: 173 VHRRAELRAAKSIQE-KAFKNEKLNFMWNTVIEEIKGD--GIVESAVFKNRETGE----- 224
Query: 382 GKRKIVGTGEYITVEADT---VIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIP 438
E++ E D + + IG P L L++ E G I D+N+ T++
Sbjct: 225 -------VTEFVAPEEDGTFGIFVFIGYDPKSAL--VEGKLELDETGYIPTDDNMKTNVE 275
Query: 439 GVFAGGD-AIRGEATVILAMGDGRKAAKAIHEYLSK 473
GVFA GD ++ V+ A DG AA +Y+ +
Sbjct: 276 GVFAAGDIRVKSLRQVVTATADGAIAAVQAEKYIEE 311
>gb|AAC97377.1| (AF107264) glutamate synthase small subunit [Rhizobium etli]
Length = 471
Score = 75.7 bits (183), Expect = 1e-12
Identities = 52/174 (29%), Positives = 79/174 (44%), Gaps = 14/174 (8%)
Query: 18 ERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDNPR 77
+R+R F E + + ++A RC+ C Y GCPV+ IP + + N
Sbjct: 29 DRIRHFREFTIPMSDPEVQKQAARCMDCGIPYCHGPTGCPVHNQIPDWNDLVYNNN---- 84
Query: 78 KAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPINIGKLERFVADYAREHG 137
A++ + + N+ P TGRVCP CE C + P+ I +E+ +AD A E G
Sbjct: 85 --WEAAIQNLHSTNNFPEFTGRVCPA--PCEEACTLNLEDAPVAIKTVEQAIADKAYELG 140
Query: 138 IDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGG 191
+ GK+VAVIG+GPAG+ A A + + +PGG
Sbjct: 141 -----FIRPQPATVHTGKKVAVIGSGPAGMAAAQHSAAPATKCMSMN-VRQPGG 188
>pir||C75218 probable monooxygenase PAB0184 - Pyrococcus abyssi (strain Orsay)
>gi|5457703|emb|CAB49194.1| (AJ248283) PROBABLE
MONOOXYGENASE [Pyrococcus abyssi]
Length = 407
Score = 75.7 bits (183), Expect = 1e-12
Identities = 93/345 (26%), Positives = 148/345 (41%), Gaps = 60/345 (17%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL------AYGIPEFR---LPKEIL 207
VAVIG GPAG+ A + ++G V + + GG+L +GI F+ E
Sbjct: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
Query: 208 RKELKKLKFLGVEIKTDHIVGRTVTI-----------PELLEEYDAIFISTGAGTPKL-- 254
K + +L+ VE++T V + P +EE A I AG +
Sbjct: 64 YKLMNRLR--DVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERHA 121
Query: 255 --LKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSA 312
+ I G + GI++A E T LM Y I+ G+ ++++G+G+ + AR
Sbjct: 122 FEIGITGDRVAGIFTAGEAQT---LMDIY-------GIMPGREILIVGSGDVGLIMARRF 171
Query: 313 LRLGAEV-----IIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAV 367
GA V ++ Y G V + + VE G +GRV+ V
Sbjct: 172 ALEGARVKAVIELMPYPGG------LARNVMILNDFNIPLYLSHKVVEIRG--KGRVQRV 223
Query: 368 KFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPN-KILWRTTPGLKVREDGT 426
K K+ R+I GT + V+ DTVII+ G PN K+L + + G
Sbjct: 224 KIVKV-------DENLREIPGTEFW--VDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGP 274
Query: 427 IIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
IV++ L T++PG+F G+A+ V + G AA+ E++
Sbjct: 275 -IVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFI 318
>gi|11499149 thioredoxin reductase (trxB) [Archaeoglobus fulgidus]
>gi|7427758|pir||A69444 thioredoxin reductase (NADPH)
(EC 1.6.4.5) - Archaeoglobus fulgidus
>gi|2649006|gb|AAB89692.1| (AE000995) thioredoxin
reductase (trxB) [Archaeoglobus fulgidus]
Length = 300
Score = 75.3 bits (182), Expect = 1e-12
Identities = 91/331 (27%), Positives = 137/331 (40%), Gaps = 50/331 (15%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLP------KEILRKE 210
VA+IG GPAGLT A A+ G + FE + +P L+ P E+L K
Sbjct: 4 VAIIGGGPAGLTAALYSARYGLKTVFFETV-DPVSQLSLAAKIENYPGFEGSGMELLEKM 62
Query: 211 LKKLKFLGVEIKTDHIV-----GRTVTIPELLEEYD--AIFISTGAGTPKLLKIPGINLN 263
++ G E K + + G T T+ EY+ AI ++TG +
Sbjct: 63 KEQAVKAGAEWKLEKVERVERNGETFTVIAEGGEYEAKAIIVATGGKHKEA--------- 113
Query: 264 GIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEVIIAY 323
GI + F+ R D GK+VIV G+G A++ A +G EV I
Sbjct: 114 GIEGESAFIGR----GVSYCATCDGNFFRGKKVIVYGSGKEAIEDAIYLHDIGCEVTIVS 169
Query: 324 RRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRV-KAVKFEKMKPLEERDKRG 382
R A V+ ++ G+ + + IG G+V K V + + K
Sbjct: 170 R--TPSFRAEKALVEEVEKRGIPVHYSTTIRKIIG--SGKVEKVVAYNREKK-------- 217
Query: 383 KRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFA 442
E +EAD + +AIG P + G++ G I VD+ T++ GVFA
Sbjct: 218 --------EEFEIEADGIFVAIGMRPATDVVAEL-GVERDSMGYIKVDKEQRTNVEGVFA 268
Query: 443 GGDAIRGE-ATVILAMGDGRKAAKAIHEYLS 472
GD V+ A GDG AA + ++YL+
Sbjct: 269 AGDCCDNPLKQVVTACGDGAVAAYSAYKYLT 299
>gb|AAG13948.1|AF283287_1 (AF283287) ferrodoxin-NADP(+) reductase [Salvelinus fontinalis]
Length = 498
Score = 75.3 bits (182), Expect = 1e-12
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 156 RVAVIGAGPAGLTCAAELAKM--GYEVTIFEALHEPGGVLAYGI-PEFRLPKEILRKELK 212
+V ++G GPAG A L K +V I+E L P G++ +G+ P+ K ++ +
Sbjct: 45 KVCIVGGGPAGFYTAQHLVKTRTDVQVDIYERLPVPFGLVRFGVAPDHPEVKNVINTFTQ 104
Query: 213 KLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFL 272
+ + VG+ VT+ EL E Y A+ +S GA + + +PG +L G+YSA +F+
Sbjct: 105 TARHARCSFHGNVRVGKDVTVEELQEAYHAVVLSYGAEGNRTMGVPGEDLAGVYSAKDFV 164
Query: 273 TRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL 313
N + + P + + +++G GN A+D AR L
Sbjct: 165 GWYNGLPRNRELR---PDLSCETAVILGQGNVALDVARMLL 202
>emb|CAA11546.1| (AJ223781) thioredoxin reductase [Staphylococcus aureus]
Length = 311
Score = 74.9 bits (181), Expect = 2e-12
Identities = 88/331 (26%), Positives = 143/331 (42%), Gaps = 50/331 (15%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAY-----GIPEFRL--PKEILRK 209
+A+IGAGPAG+T A ++ + + E PGG +A P F + ++ K
Sbjct: 8 IAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMANTEEVENFPGFEMITGPDLSTK 66
Query: 210 ELKKLKFLGV-----EIKTDHIVGRTVTIPELLEEYDA--IFISTGAGTPKLLKIPGINL 262
+ K G +IK+ G I +E A + I+TGAG K+ +PG
Sbjct: 67 MFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAGYKKI-GVPGEQE 125
Query: 263 NGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEVIIA 322
G + D KR+ VIG G++A++ + +V I
Sbjct: 126 LGGRGVSYCAV------------CDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIV 173
Query: 323 YRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRG 382
+RR E RI + + K + + F++ + ++ I +++G+V +V K E
Sbjct: 174 HRRD-ELRAQRILQDRAFKNDKIDFIWS-HTLKSINEKDGKVGSVTLTSTKDGSEE---- 227
Query: 383 KRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVRED-GTIIVDENLMTSIPGVF 441
T EAD V I IG P L L + D G I+ +++ TS+PG+F
Sbjct: 228 -----------THEADGVFIYIGMKP---LTAPFKDLGITNDVGYIVTKDDMTTSVPGIF 273
Query: 442 AGGDA-IRGEATVILAMGDGRKAAKAIHEYL 471
A GD +G ++ A GDG AA++ Y+
Sbjct: 274 AAGDVRDKGLRQIVTATGDGSIAAQSTSGYI 304
>pir||T45351 ferredoxin [imported] - Mycobacterium leprae
>gi|2440106|emb|CAB16679.1| (Z99494) ferredoxin
[Mycobacterium leprae]
Length = 555
Score = 74.1 bits (179), Expect = 3e-12
Identities = 115/475 (24%), Positives = 180/475 (37%), Gaps = 109/475 (22%)
Query: 52 CIKGCPVNIDIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVC 111
C+ CPVN + D P A E L I C C C
Sbjct: 15 CVFACPVN--------CIHPTPDEPGFATSEMLY----------IDPVACVDCGACVSAC 56
Query: 112 VVGKVGDPINIGKLE----RFVADYAREHGIDDEL-----LMEEIRG----IKRNGKRVA 158
VG + + + A Y ID +L L I ++R VA
Sbjct: 57 PVGAIASDTRLAPKQLPFIEINASYYPARPIDLKLPPTSKLAPVIPAAQVHVRRRPLTVA 116
Query: 159 VIGAGPAGLTCAAEL-AKMGYEVTIFEALHEPGGVLAYGI-PEFRLPKEILR-----KEL 211
++G+GPA + A EL + G V +FE L P G++ G+ P+ + K++ E
Sbjct: 117 IVGSGPAAMYAADELLTQPGVWVNVFEKLPTPYGLVRAGLAPDHQNTKKVTELFDRVAEH 176
Query: 212 KKLKF-LGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANE 270
++ +F L VEI GR ++ ELL + A+ + GA + L I G+ + G +A E
Sbjct: 177 RRFRFFLNVEI------GRHLSHDELLAHHHAVLYAVGAPDDRRLNIDGMGIPGTGTATE 230
Query: 271 FLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAAR-------------------- 310
+ IN + + D + +RV+VIG GN A+D AR
Sbjct: 231 LVAWINAHPDFAYLPVD---LSHERVVVIGNGNVALDVARLLTADPDNLARTDISEFALH 287
Query: 311 ----SALRLGAEVIIAYRRGKE----------DMTARIEEVQHAKEEGVKFMFFVNPVEF 356
SA+R EV++A RRG + A E V A + + F +
Sbjct: 288 VLGGSAVR---EVVVAARRGPAHSAFTLPELIGLKATSEVVLDAGDRKLVEGDFATVSDS 344
Query: 357 IGDEEGRVKAVKFEKMKPLEERDKR-----------GKRK-------IVGTGEYITVEAD 398
+ ++ V + + KP R R G ++ + GT E +A
Sbjct: 345 LTRKKLEVLSSLVDSSKPTSRRRIRLAYQLTPKRVLGNQRATGVEFSVTGTEESRRFDAG 404
Query: 399 TVIIAIGQTPNKILWRTTP----GLKVREDGTIIVDENLMTSIPGVFAGGDAIRG 449
V+ ++G +I R P + DG +VD + +PG + G RG
Sbjct: 405 LVLTSVGYRGKRI--RDLPFDEEAAVIPNDGGRVVDPSRGRPMPGAYVAGWIKRG 457
>sp|Q10547|FPRB_MYCTU PROBABLE FERREDOXIN/FERREDOXIN--NADP REDUCTASE (FNR)
>gi|7451579|pir||C70781 probable fprB protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1314025|emb|CAA97393.1| (Z73101) fprB [Mycobacterium
tuberculosis]
Length = 575
Score = 74.1 bits (179), Expect = 3e-12
Identities = 98/368 (26%), Positives = 157/368 (42%), Gaps = 76/368 (20%)
Query: 146 EIRGIKRNGKRVAVIGAGPAGLTCAAEL-AKMGYEVTIFEALHEPGGVLAYGI-PEFRLP 203
E+R ++R VAV+G+GPA + A EL + G +V +FE L P G++ G+ P+ +
Sbjct: 105 EVR-VRRQPLTVAVVGSGPAAMYAADELLVQQGVQVNVFEKLPTPYGLVRSGVAPDHQNT 163
Query: 204 KEILR-----KELKKLKF-LGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKI 257
K + R ++ +F L VEI G+ + ELL + A+ + GA + L I
Sbjct: 164 KRVTRLFDRIAGHRRFRFYLNVEI------GKHLGHAELLAHHHAVLYAVGAPDDRRLTI 217
Query: 258 PGINLNGIYSANEFLTRINLMKAYKFPEY-DTPIVVG-KRVIVIGAGNTAMDAAR----- 310
G+ L G +A E + +N P++ D P+ + +RV++IG GN A+D AR
Sbjct: 218 DGMGLPGTGTATELVAWLN-----GHPDFNDLPVDLSHERVVIIGNGNVALDVARVLAAD 272
Query: 311 --------------SALRLGA--EVIIAYRRGKEDMTARIEEV----------------Q 338
SALR A EV++A RRG + E+ Q
Sbjct: 273 PHELAATDIADHALSALRNSAVREVVVAARRGPAHSAFTLPELIGLTAGADVVLDPGDHQ 332
Query: 339 HAKEE--GVKFMFFVNPVEF---IGDEEGRVKAVKFEKMK---PLEERDKRGKRK----- 385
++ V N +E +GD + V +++ L R G+R+
Sbjct: 333 RVLDDLAIVADPLTRNKLEILSTLGDGSAPARRVGRPRIRLAYRLTPRRVLGQRRAGGVQ 392
Query: 386 --IVGTGEYITVEADTVIIAIGQTPNKI--LWRTTPGLKVREDGTIIVDENLMTSIPGVF 441
+ GT E ++A V+ +IG I L V DG ++D +PG +
Sbjct: 393 FSVTGTDELRQLDAGLVLTSIGYRGKPIPDLPFDEQAALVPNDGGRVIDPGTGEPVPGAY 452
Query: 442 AGGDAIRG 449
G RG
Sbjct: 453 VAGWIKRG 460
>pir||D72383 NADH oxidase - Thermotoga maritima (strain MSB8)
>gi|4980883|gb|AAD35465.1|AE001718_2 (AE001718) NADH
oxidase [Thermotoga maritima]
Length = 443
Score = 74.1 bits (179), Expect = 3e-12
Identities = 81/310 (26%), Positives = 130/310 (41%), Gaps = 53/310 (17%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEILRKELK---- 212
V V+G GPAGL A + + I ++ GIP + +
Sbjct: 5 VVVVGGGPAGLVAAFTTKRFFGDKKILVVKKTEKEMVPCGIPYIFHTLGSVENDYMGIED 64
Query: 213 KLKFLGVEIKTDHIVGRTVTIPELLEE------YDAIFISTGAGTPKLLKIPGINLNGIY 266
+ K G+++ D +V +L + YD + I+TG+ +P + KIPG++L G++
Sbjct: 65 RFKGAGIDLLIDEVVDGNPDEKKLFTKSGKEISYDKLIIATGS-SPNIPKIPGVDLKGVF 123
Query: 267 SANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEVIIAYRRG 326
+ + + L+ D V++IG G ++ A + G V +
Sbjct: 124 TVPKEADYLKLLHEKVKDAND--------VVIIGGGFIGVEVADEIKKSGKNVTL----- 170
Query: 327 KEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGD-EEGRVKAVKFEKMKPLEER---DKRG 382
V+ M + PV F D E K ++ + +K L R + G
Sbjct: 171 ------------------VEIMDSLLPVSFDPDFGELARKELESDNVKVLTGRKVTEILG 212
Query: 383 KRKIVG----TGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIP 438
K+ G +GE T+ AD V++A G PN L R GLKV E G I DE + TS P
Sbjct: 213 TEKVEGVKLDSGE--TIPADVVVLATGYKPNSELARKL-GLKVTELGFIETDEYMRTSKP 269
Query: 439 GVFAGGDAIR 448
+FA GD ++
Sbjct: 270 DIFAAGDCVQ 279
>emb|CAC01564.1| (AL391039) 2,4-dienoyl-CoA reductase [NADPH] [Streptomyces
coelicolor A3(2)]
Length = 671
Score = 74.1 bits (179), Expect = 3e-12
Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 22/160 (13%)
Query: 152 RNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL--AYGIPEFRLPKEILRK 209
R KRVAV+GAGPAGL CA A+ G+EVT+F+A E GG L A IP + E LR
Sbjct: 373 RRRKRVAVVGAGPAGLACAVSAAERGHEVTLFDAASEIGGQLNVARKIPGKQEFDETLRY 432
Query: 210 ELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSAN 269
+L GV+++ + VG L +D + ++TG TP+ IPG++ +
Sbjct: 433 FRTQLAAHGVDVRLNTRVGVAD-----LTGHDEVVVATGV-TPRTPDIPGVDHPSVVGYL 486
Query: 270 EFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAA 309
+ L VG+RV ++GAG D A
Sbjct: 487 DVLR--------------DAAPVGERVAILGAGGIGFDVA 512
>pir||A70920 probable adrenodoxin and NADPH ferredoxin reductase - Mycobacterium
tuberculosis (strain H37RV) >gi|2076681|emb|CAB08363.1|
(Z95150) fprA [Mycobacterium tuberculosis]
Length = 456
Score = 73.7 bits (178), Expect = 4e-12
Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 23/194 (11%)
Query: 157 VAVIGAGPAGLTCAAELAK-------MGYEVTIFEALHEPGGVLAYGI-PEFRLPKEILR 208
+A++G+GP+ AA L K + V + E L P G++ G+ P+ K I +
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 65
Query: 209 KELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSA 268
+ K + + +VG V EL E YDA+ + GA + ++L IPG +L G +A
Sbjct: 66 QFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAA 125
Query: 269 NEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAEVIIAYRRGKE 328
+F+ N A+ E +P + G R +VIG GN A+D AR L
Sbjct: 126 VDFVGWYN---AHPHFEQVSPDLSGARAVVIGNGNVALDVARILLT------------DP 170
Query: 329 DMTARIEEVQHAKE 342
D+ AR + HA E
Sbjct: 171 DVLARTDIADHALE 184
>pir||H71171 probable NADH oxidase - Pyrococcus horikoshii
>gi|3256978|dbj|BAA29661.1| (AP000002) 445aa long
hypothetical NADH oxidase [Pyrococcus horikoshii]
Length = 445
Score = 72.2 bits (174), Expect = 1e-11
Identities = 79/312 (25%), Positives = 142/312 (45%), Gaps = 56/312 (17%)
Query: 155 KRVAVIGAGPAGLTCAAELAKMG--YEVTIFEAL----HEPGGV------------LAYG 196
K+V +IG G AG++ A+ + ++ ++V +FEA H P G+ L Y
Sbjct: 7 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYY 66
Query: 197 IPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLK 256
PE + K + L +E+ T ++ R E E+D + + GA +P++
Sbjct: 67 PPEVFIKKRGIDLHLNAEV---IEVDTGYVRVRE-NGGEKSYEWDYLVFANGA-SPQVPA 121
Query: 257 IPGINLNGIYSAN---EFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL 313
I G+NL G+++A+ + L M+ YK + V++IG G ++ A +
Sbjct: 122 IEGVNLKGVFTADLPPDALAIREYMEKYKV----------ENVVIIGGGYIGIEMAEAFA 171
Query: 314 RLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMK 373
G V + R + + +EV EE +K VN ++ +++
Sbjct: 172 AQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKK--HVN--------------LRLQEIT 215
Query: 374 PLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENL 433
E ++R ++ + GEY +A+ VI+A G PN L + G+++ E G I +E +
Sbjct: 216 MKIEGEERVEKVVTDAGEY---KAELVILATGIKPNIELAKQL-GVRIGETGAIWTNEKM 271
Query: 434 MTSIPGVFAGGD 445
TS+ V+A GD
Sbjct: 272 QTSVENVYAAGD 283
>emb|CAB60462.1| (AL132856) putative ferredoxin/ferredoxin-NADP reductase (EC
1.18.1.2) [Streptomyces coelicolor A3(2)]
Length = 454
Score = 72.2 bits (174), Expect = 1e-11
Identities = 55/179 (30%), Positives = 89/179 (48%), Gaps = 25/179 (13%)
Query: 156 RVAVIGAGPAGLTCAAELAKM------GYEVTIFEALHEPGGVLAYGI----PEFRLPKE 205
RVA++G+GPAG+ A L K G + IFE + P G++ YG+ P +
Sbjct: 6 RVAIVGSGPAGIYAADALLKSEVAADPGVSIDIFERMPAPFGLIRYGVAPDHPRIKGIIT 65
Query: 206 ILRKELKKLK---FLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINL 262
L + L K + F V TD V++ +L YD + +TGA + L +PGI+L
Sbjct: 66 ALHQVLDKPQIRLFGNVNYPTD------VSLDDLRAFYDGVIFATGATADRDLSLPGIDL 119
Query: 263 NGIYSANEFLTRINLMKAYKFPEYD-TPIVVGKRVIVIGAGNTAMDAARSALRLGAEVI 320
+G Y A +F+ + P++ T + ++V V+G GN A+D AR + E++
Sbjct: 120 DGSYGAADFVAWYD-----GHPDFPRTWPLEAEKVAVLGVGNVALDIARVLAKTADELL 173
>sp|O66790|TRXB_AQUAE THIOREDOXIN REDUCTASE (TRXR) >gi|7427756|pir||B70345 thioredoxin
reductase (NADPH) (EC 1.6.4.5) - Aquifex aeolicus
>gi|2983154|gb|AAC06756.1| (AE000693) thioredoxin
reductase [Aquifex aeolicus]
Length = 323
Score = 71.8 bits (173), Expect = 2e-11
Identities = 85/339 (25%), Positives = 141/339 (41%), Gaps = 62/339 (18%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAY--------GIPEFRLPKEILR 208
V +IGAGPAG T A A+ G++ + E G L G+P E+L+
Sbjct: 15 VIIIGAGPAGTTAAIYTARAGWKTLVLYRA-EADGALGVTQKIENYPGVPGPLSGYELLK 73
Query: 209 KELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNG--IY 266
++ K G E ++ + + K+ I G G I
Sbjct: 74 IMREQAKSFGAEFVRGKVIATDL----------------NSDPKKVYTIDGREFRGKTII 117
Query: 267 SANEFLTRINLMKAYKFPEY-----------DTPIVVGKRVIVIGAGNTAMDAARSALRL 315
A+ + R N K + E+ D + V VIG + A++ A R
Sbjct: 118 VASGAMERANKFKGEE--EFLGRGVSYCGVCDAAFFKDQPVAVIGDDDYAIEEAEFIARF 175
Query: 316 GAEVIIAYRRGKEDMTARIEEVQH-AKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKP 374
+V K + A E ++H K V+ + P+E +GD+ VK K+K
Sbjct: 176 ANKVFFVVPGSK--IKAPPEVIEHFEKLPNVEILLRHRPIEIVGDQ-----VVKGIKLKD 228
Query: 375 LEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLM 434
LE+++++ +E + V I +G T + + +++ E I+V+E +M
Sbjct: 229 LEKKEEK------------LLEVNGVFIFLGGTKPSVDF-LMGQVEMTEGDCIVVNEEMM 275
Query: 435 TSIPGVFAGGDAIRGEA-TVILAMGDGRKAAKAIHEYLS 472
TS+PGVFA GD + E ++A G KAA A+ ++LS
Sbjct: 276 TSVPGVFAAGDVLCNEVKQAVVAAAMGCKAALAVDKFLS 314
>sp|P56522|ADRO_RAT NADPH:ADRENODOXIN OXIDOREDUCTASE PRECURSOR (ADRENODOXIN REDUCTASE)
(FERREDOXIN-NADP(+) REDUCTASE)
>gi|2665454|dbj|BAA23759.1| (D63761) precursor for
adrenodoxin reductase [Rattus norvegicus]
Length = 494
Score = 71.8 bits (173), Expect = 2e-11
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 156 RVAVIGAGPAGLTCAAELAK--MGYEVTIFEALHEPGGVLAYGI-PEFRLPKEILRKELK 212
++ V+G+GPAG A L K V I+E P G++ +G+ P+ K ++ +
Sbjct: 42 QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 101
Query: 213 KLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFL 272
+ + + +VGR V++PEL E Y A+ +S GA + L+IPG L G+ SA F+
Sbjct: 102 TARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEELPGVVSARAFV 161
Query: 273 TRINLMKAYKFPEYD--TPIVVGKRVIVIGAGNTAMDAARSAL 313
N PE P + +++G GN A+D AR L
Sbjct: 162 GWYN-----GLPENQKLAPDLSCDTAVILGQGNVALDVARILL 199
>pir||D75107 NADH oxidase (noxa-2) PAB1931 - Pyrococcus abyssi (strain Orsay)
>gi|5458084|emb|CAB49573.1| (AJ248285) NADH oxidase
(noxA-2) [Pyrococcus abyssi]
Length = 440
Score = 71.4 bits (172), Expect = 2e-11
Identities = 93/347 (26%), Positives = 144/347 (40%), Gaps = 72/347 (20%)
Query: 156 RVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEP-------------GGVLAYGIPEFRL 202
RV VIG+G AG A L K+ + I EP G +
Sbjct: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
Query: 203 PKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINL 262
P E K+ K+ LGVE K + V + YD + ++TG+ + I G+
Sbjct: 62 PNEFYEKQKIKM-MLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKA-FIPPIKGVEN 119
Query: 263 NGIYSANEFLTRINLMKAYKFPEYDTPIVVGKR----VIVIGAGNTAMDAARSALRLGAE 318
G+++ L + +K Y +GKR +VIGAG ++ A + +LG E
Sbjct: 120 EGVFTLKS-LDDVRRIKEY----------IGKRNPKKAVVIGAGLIGLEGAEAFAKLGME 168
Query: 319 VIIAY-------RRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEK 371
V++ +DM + ++ ++ +E GVKF F V E IG+ V+AVK
Sbjct: 169 VLVVELLEHLLPTMLDKDMASIVQ--KNMEEHGVKFRFGVGVSEIIGNP---VEAVKIGD 223
Query: 372 MKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDE 431
TVEAD V++A G N L + GL+V I+V+E
Sbjct: 224 E---------------------TVEADLVLVATGVRANVDLAKDA-GLEVNRG--IVVNE 259
Query: 432 NLMTSIPGVFAGG------DAIRGEATVILAMGDGRKAAKAIHEYLS 472
L TS P ++A G DA+ G+ T+ + AK E+++
Sbjct: 260 YLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIA 306
>pir||T45314 probable ferredoxin [imported] - Mycobacterium leprae
>gi|2326694|emb|CAB11006.1| (Z98271) possible ferredoxin
[Mycobacterium leprae]
Length = 456
Score = 71.0 bits (171), Expect = 3e-11
Identities = 73/266 (27%), Positives = 116/266 (43%), Gaps = 38/266 (14%)
Query: 157 VAVIGAGPAGLTCAAELAK-------MGYEVTIFEALHEPGGVLAYGI-PEFRLPKEILR 208
+A++G+GP+G AA + K + V + E L P G++ G+ P+ K I +
Sbjct: 9 IAIVGSGPSGFFAAASVLKAADASDEINVAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 68
Query: 209 KELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSA 268
+ K + + IVG+ + EL E YDA+ + GA + + L IPG +L G +A
Sbjct: 69 QFEKTAEDPRFRFFGNVIVGKHIEPAELAERYDAVIYAVGAQSDRALNIPGEDLPGSIAA 128
Query: 269 NEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL--------------- 313
+F+ N A+ +P + G R +VIG GN A+D R +
Sbjct: 129 VDFVGWYN---AHPNFHERSPDLSGSRAVVIGNGNVALDVTRILITDPDVLAFTDIADHA 185
Query: 314 ------RLGAEVIIAYRRGK-EDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEE----G 362
R EV+I RRG + +E + A EGV + +E I DE G
Sbjct: 186 LESLRPRGIEEVVIVGRRGPLQTAFTTLELRELADIEGVDVLVDPAQLEGISDENAAAAG 245
Query: 363 RVKAVKFEKMKPLEER-DKRGKRKIV 387
+ + ++ R K G R+IV
Sbjct: 246 KTTRQNIKVLRDYTVRTPKPGHRRIV 271
>sp|O05204|AHPF_STAAU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi|1916317|gb|AAB51152.1|
(U92441) alkyl hydroperoxide reductase subunit F
[Staphylococcus aureus]
Length = 507
Score = 70.6 bits (170), Expect = 4e-11
Identities = 87/337 (25%), Positives = 136/337 (39%), Gaps = 56/337 (16%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL--AYGIPEFRLPKEILRKELKK- 213
V ++G GPA + A A+ G I GG + GI F KE E
Sbjct: 208 VLIVGGGPASGSAAIYTARKGLRTGI--VADRIGGQVNDTAGIENFITVKETTGSEFSSN 265
Query: 214 ---------------LKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIP 258
++ +E KTD + T+ +LE + I+TGAG KL IP
Sbjct: 266 LAAHIDQYDIDAMTGIRATDIE-KTDEAIKVTLENGAVLES-KTVIIATGAGWRKL-NIP 322
Query: 259 GINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAE 318
G E L IN A+ P D P+ K V VIG GN+ ++AA +
Sbjct: 323 G---------EEQL--INKGVAF-CPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNH 370
Query: 319 VIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEER 378
V + + E + + + V E +G++ V +++E M
Sbjct: 371 VTL-FEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDH--VTGIRYEDMN----- 422
Query: 379 DKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENLMTSIP 438
TGE + D + + IG PN W +++ E G I++D N T++P
Sbjct: 423 ----------TGEEHLLNLDGIFVQIGLLPNTS-W-LNDAVELNERGEIVIDRNNNTNVP 470
Query: 439 GVFAGGDAI-RGEATVILAMGDGRKAAKAIHEYLSKS 474
G+FA GD + +I++MG G AA +Y+ ++
Sbjct: 471 GIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN 507
>gi|6679767 ferredoxin reductase [Mus musculus]
>gi|3023277|sp|Q61578|ADRO_MOUSE NADPH:ADRENODOXIN
OXIDOREDUCTASE PRECURSOR (ADRENODOXIN REDUCTASE)
(FERREDOXIN-NADP(+) REDUCTASE) >gi|2117685|pir||S60028
ferredoxin--NADP+ reductase (EC 1.18.1.2) precursor -
mouse >gi|1088469|dbj|BAA08659.1| (D49920)
Ferredoxin-NADP Reductase precursor [Mus musculus]
Length = 494
Score = 70.2 bits (169), Expect = 5e-11
Identities = 51/163 (31%), Positives = 80/163 (48%), Gaps = 10/163 (6%)
Query: 156 RVAVIGAGPAGLTCAAELAK--MGYEVTIFEALHEPGGVLAYGI-PEFRLPKEILRKELK 212
++ V+G+GPAG A L K V I+E P G++ +G+ P+ K ++ +
Sbjct: 42 QICVVGSGPAGFYTAQHLLKHHTHAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 101
Query: 213 KLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFL 272
+ + + +VGR V++PEL E Y A+ +S GA + L IPG L G+ SA F+
Sbjct: 102 TARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLGIPGEELPGVVSARAFV 161
Query: 273 TRINLMKAYKFPEYD--TPIVVGKRVIVIGAGNTAMDAARSAL 313
N PE P + +++G GN A+D AR L
Sbjct: 162 GWYN-----GLPENQELAPDLSCDTAVILGQGNVALDVARILL 199
>pir||G69759 thioredoxin reductase homolog ycgT - Bacillus subtilis
>gi|2632613|emb|CAB12121.1| (Z99105) similar to
thioredoxin reductase [Bacillus subtilis]
Length = 336
Score = 70.2 bits (169), Expect = 5e-11
Identities = 87/336 (25%), Positives = 140/336 (40%), Gaps = 42/336 (12%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEF------RLPKEILRKE 210
V +IG GP GL A + + E L + GG ++ PE +P ++
Sbjct: 10 VTIIGGGPIGLFTAFYCGMRELKTKVIEFLPKLGGKVSLFFPEKIIRDIGGIPGIAGKQL 69
Query: 211 LKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGI--YSA 268
+++LK D ++ + VT E L+ D + TG+ K I G+
Sbjct: 70 IEQLKEQAATFDPDIVLNQRVTGFERLD--DGTIVLTGSEGKKHYTRTVILACGMGTLEV 127
Query: 269 NEFLTRINLMKAYKFPEYDTPIV---VGKRVIVIGAGNTAMDAARSALRLGAEVIIAYRR 325
NEF + A K Y + GKRV++ G G+TA+D A + A V + +RR
Sbjct: 128 NEFDSEDAARYAGKNLHYGVEKLDAFKGKRVVISGGGDTAVDWANELEPIAASVTVVHRR 187
Query: 326 GKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEERDKRGKRK 385
E+ V K+ V+ + + GDEEG +K+V + + +D
Sbjct: 188 --EEFGGMESSVTKMKQSSVRVLTPYRLEQLNGDEEG-IKSVTVCHTESGQRKD------ 238
Query: 386 IVGTGEYITVEADTVIIAIG---QTPNKILWRTTPGLKVREDGTIIVDENLMTSIPGVFA 442
+E D +II G + W GL++ E+G + D ++ T++PGVF
Sbjct: 239 ---------IEIDELIINHGFKIDLGPMMEW----GLEI-EEGRVKADRHMRTNLPGVFV 284
Query: 443 GGDAIRGEATVILAMG---DGRKAAKAIHEYLSKSA 475
GDA E+ + L G +G A + YL A
Sbjct: 285 AGDAAFYESKLRLIAGGFTEGPTAVNSAKAYLDPKA 320
>sp|Q9Z8M4|TRXB_CHLPN THIOREDOXIN REDUCTASE (TRXR) >gi|7431887|pir||C72093 thioredoxin
reductase CP0444 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39) >gi|4376591|gb|AAD18463.1|
(AE001616) Thioredoxin Reductase [Chlamydophila
pneumoniae CWL029] >gi|7189366|gb|AAF38283.1| (AE002205)
thioredoxin reductase [Chlamydophila pneumoniae AR39]
>gi|8978688|dbj|BAA98524.1| (AP002546) thioredoxin
reductase [Chlamydophila pneumoniae J138]
Length = 311
Score = 70.2 bits (169), Expect = 5e-11
Identities = 81/308 (26%), Positives = 126/308 (40%), Gaps = 47/308 (15%)
Query: 156 RVAVIGAGPAGLTCAAELAKMGYEVTIFEALHE--PGGVLAY--------GIPEFRLPKE 205
R+ +IG+GP+G T A ++ +FE GG L G PE L +
Sbjct: 5 RLIIIGSGPSGYTAAIYASRALLHPLLFEGFFSGISGGQLMTTTEVENFPGFPEGILGPK 64
Query: 206 ILRKELKKLKFLGVEIKTDHIVGRTVTIPELL-----EEY--DAIFISTGAGTPKLLKIP 258
++ ++ G + I+ ++ + E Y DA I+TGA K L+IP
Sbjct: 65 LMNNMKEQAVRFGTKTLAQDIISVDFSVRPFILKSKEETYSCDACIIATGASA-KRLEIP 123
Query: 259 GINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSALRLGAE 318
G + + + A + +PI K + VIG G++A++ A R G+
Sbjct: 124 GAGNDEFWQKG--------VTACAVCDGASPIFKNKDLYVIGGGDSALEEALYLTRYGSH 175
Query: 319 VIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEKMKPLEER 378
V + +RR K ++ E + E + F++ V+ GD R +
Sbjct: 176 VYVVHRRDKL-RASKAMEARAQNNEKITFLWNSEIVKISGDSIVRSVDI----------- 223
Query: 379 DKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDENL-MTSI 437
K V T E T EA V AIG PN L + E G I+ ++ TS+
Sbjct: 224 ------KNVQTQEITTREAAGVFFAIGHKPNTDF--LGGQLTLDESGYIVTEKGTSKTSV 275
Query: 438 PGVFAGGD 445
PGVFA GD
Sbjct: 276 PGVFAAGD 283
>gi|4758354 ferredoxin reductase; adrenodoxin reductase; Ferredoxin reductase
(adrenodoxin reductase) [Homo sapiens]
>gi|105982|pir||A40487 ferredoxin--NADP+ reductase (EC
1.18.1.2), long form, precursor - human
>gi|178214|gb|AAB59498.1| (J03826) adrenodoxin reductase
precursor species 2 [Homo sapiens]
Length = 497
Score = 69.9 bits (168), Expect = 6e-11
Identities = 51/160 (31%), Positives = 79/160 (48%), Gaps = 5/160 (3%)
Query: 156 RVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGI-PEFRLPKEILRKELKK 213
++ V+G+GPAG A L K V I+E P G++ +G+ P+ K ++ +
Sbjct: 40 QICVVGSGPAGFYTAQHLLKHPQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQT 99
Query: 214 LKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLT 273
+ VGR VT+PEL E Y A+ +S GA + L+IPG L G+ SA F+
Sbjct: 100 AHSGRCAFWGNVEVGRDVTVPELQEAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVG 159
Query: 274 RINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL 313
N + + E P + +++G GN A+D AR L
Sbjct: 160 WYNGLPENQELE---PDLSCDTAVILGQGNVALDVARILL 196
>gb|AAA51668.1| (M58509) adrenodoxin reductase [Homo sapiens]
Length = 497
Score = 69.9 bits (168), Expect = 6e-11
Identities = 51/160 (31%), Positives = 79/160 (48%), Gaps = 5/160 (3%)
Query: 156 RVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGI-PEFRLPKEILRKELKK 213
++ V+G+GPAG A L K V I+E P G++ +G+ P+ K ++ +
Sbjct: 40 QICVVGSGPAGFYTAQHLLKHPQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQT 99
Query: 214 LKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLT 273
+ VGR VT+PEL E Y A+ +S GA + L+IPG L G+ SA F+
Sbjct: 100 AHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVG 159
Query: 274 RINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL 313
N + + E P + +++G GN A+D AR L
Sbjct: 160 WYNGLPENQELE---PDLSCDTAVILGQGNVALDVARILL 196
>gb|AAA51669.1| (M58509) adrenodoxin reductase [Homo sapiens]
Length = 491
Score = 69.9 bits (168), Expect = 6e-11
Identities = 51/160 (31%), Positives = 79/160 (48%), Gaps = 5/160 (3%)
Query: 156 RVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGI-PEFRLPKEILRKELKK 213
++ V+G+GPAG A L K V I+E P G++ +G+ P+ K ++ +
Sbjct: 40 QICVVGSGPAGFYTAQHLLKHPQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQT 99
Query: 214 LKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLT 273
+ VGR VT+PEL E Y A+ +S GA + L+IPG L G+ SA F+
Sbjct: 100 AHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVG 159
Query: 274 RINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL 313
N + + E P + +++G GN A+D AR L
Sbjct: 160 WYNGLPENQELE---PDLSCDTAVILGQGNVALDVARILL 196
>sp|P22570|ADRO_HUMAN NADPH:ADRENODOXIN OXIDOREDUCTASE PRECURSOR (ADRENODOXIN REDUCTASE)
(FERREDOXIN-NADP(+) REDUCTASE) >gi|178213|gb|AAB59497.1|
(J03826) adrenodoxin reductase precursor species 1 [Homo
sapiens]
Length = 491
Score = 69.9 bits (168), Expect = 6e-11
Identities = 51/160 (31%), Positives = 79/160 (48%), Gaps = 5/160 (3%)
Query: 156 RVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGI-PEFRLPKEILRKELKK 213
++ V+G+GPAG A L K V I+E P G++ +G+ P+ K ++ +
Sbjct: 40 QICVVGSGPAGFYTAQHLLKHPQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQT 99
Query: 214 LKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSANEFLT 273
+ VGR VT+PEL E Y A+ +S GA + L+IPG L G+ SA F+
Sbjct: 100 AHSGRCAFWGNVEVGRDVTVPELQEAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFVG 159
Query: 274 RINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSAL 313
N + + E P + +++G GN A+D AR L
Sbjct: 160 WYNGLPENQELE---PDLSCDTAVILGQGNVALDVARILL 196
>pir||H83044 2,4-dienoyl-CoA reductase FadH2 PA4814 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951081|gb|AAG08199.1|AE004894_5 (AE004894)
2,4-dienoyl-CoA reductase FadH2 [Pseudomonas aeruginosa]
Length = 681
Score = 69.9 bits (168), Expect = 6e-11
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 22/160 (13%)
Query: 152 RNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGV--LAYGIPEFRLPKEILRK 209
R KR+AVIGAGPAGL+ A A+ G+ V++FEA E GG LA IP +E LR
Sbjct: 382 RTQKRIAVIGAGPAGLSAACVAAERGHRVSLFEASGEIGGQFNLAKRIPGKEEFRETLRY 441
Query: 210 ELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINLNGIYSAN 269
+L+ LGV+++ +G V EL ++D + ++TG P+ +I GI
Sbjct: 442 FRVRLERLGVDLR----LGHRVRQGELDGQFDDVVVATGI-QPRRPRIDGI------GGP 490
Query: 270 EFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAA 309
L+ +++++ VG RV ++GAG D A
Sbjct: 491 TVLSYVDVLRG---------APVGARVAIVGAGGIGFDVA 521
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183150156
Number of Sequences: 2977
Number of extensions: 8265406
Number of successful extensions: 26413
Number of sequences better than 1.0e-10: 100
Number of HSP's better than 0.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 25805
Number of HSP's gapped (non-prelim): 148
length of query: 475
length of database: 189,106,746
effective HSP length: 55
effective length of query: 420
effective length of database: 156,189,961
effective search space: 65599783620
effective search space used: 65599783620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)