BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1216 (PAB1216) DE:Hypothetical protein
(136 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75023 hypothetical protein PAB1216 - Pyrococcus abyssi (st... 275 2e-73
pir||A75039 hypothetical protein PAB0859 - Pyrococcus abyssi (st... 157 4e-38
gb|AAK42159.1| Conserved hypothetical protein [Sulfolobus solfat... 122 2e-27
gi|11497685 conserved hypothetical protein [Archaeoglobus fulgid... 98 3e-20
gb|AAK41936.1| Conserved hypothetical protein [Sulfolobus solfat... 87 1e-16
>pir||E75023 hypothetical protein PAB1216 - Pyrococcus abyssi (strain Orsay)
>gi|5459141|emb|CAB50627.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 136
Score = 275 bits (695), Expect = 2e-73
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MKLFLDTNILVYLALGSVDPSYETSIDEFYRDLMKGHELYTDVLVLDEFIYILKRKYGVP 60
MKLFLDTNILVYLALGSVDPSYETSIDEFYRDLMKGHELYTDVLVLDEFIYILKRKYGVP
Sbjct: 1 MKLFLDTNILVYLALGSVDPSYETSIDEFYRDLMKGHELYTDVLVLDEFIYILKRKYGVP 60
Query: 61 YEKAITFIEETVIPVVKILPITFLDYLTAKDVMLKYKLKPSDAFHVAVIQNNGLQAIVSE 120
YEKAITFIEETVIPVVKILPITFLDYLTAKDVMLKYKLKPSDAFHVAVIQNNGLQAIVSE
Sbjct: 61 YEKAITFIEETVIPVVKILPITFLDYLTAKDVMLKYKLKPSDAFHVAVIQNNGLQAIVSE 120
Query: 121 DEDFDRLPLKRLWLRD 136
DEDFDRLPLKRLWLRD
Sbjct: 121 DEDFDRLPLKRLWLRD 136
>pir||A75039 hypothetical protein PAB0859 - Pyrococcus abyssi (strain Orsay)
>gi|5458719|emb|CAB50206.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 133
Score = 157 bits (394), Expect = 4e-38
Identities = 73/134 (54%), Positives = 101/134 (74%), Gaps = 1/134 (0%)
Query: 1 MKLFLDTNILVYLALGSVDPSYETSIDEFYRDLMKGHELYTDVLVLDEFIYILKRKYGVP 60
MK+FLD + ++YL + V S ID Y L+ +LYTDVLV+DE I++ ++KY VP
Sbjct: 1 MKIFLDASFIIYLNV-DVPDSLAEKIDALYEQLITSSKLYTDVLVIDEVIHVSRKKYKVP 59
Query: 61 YEKAITFIEETVIPVVKILPITFLDYLTAKDVMLKYKLKPSDAFHVAVIQNNGLQAIVSE 120
Y K I +++ VIP V++LPI ++YL AK+ +LKY LKPSDA H+AVI+NNG+QAIV+E
Sbjct: 60 YSKTIEMLDDIVIPYVEVLPIGLMEYLKAKENILKYNLKPSDAIHLAVIENNGIQAIVTE 119
Query: 121 DEDFDRLPLKRLWL 134
DEDFDR+P+KR+WL
Sbjct: 120 DEDFDRVPIKRIWL 133
>gb|AAK42159.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 128
Score = 122 bits (302), Expect = 2e-27
Identities = 58/133 (43%), Positives = 89/133 (66%), Gaps = 7/133 (5%)
Query: 3 LFLDTNILVYLALGSVDPSYETSIDEFYRDLMKGHELYTDVLVLDEFIYILKRKYGVPYE 62
+FLD N L+YL G + + E+Y L+ L++D LV+DE IY+ K+KYGV Y
Sbjct: 2 IFLDANFLIYLNSGV------SEVKEYYIKLLTYESLFSDPLVIDEVIYVSKKKYGVKYC 55
Query: 63 KAITFIEETVIPVVKILPITFLDYLTAKDVMLKYKLKPSDAFHVAVIQNNGLQAIVSEDE 122
I F++E V+ + +LPIT +Y AK++M KY +KPSDAFH+AV+ NN + I+SED+
Sbjct: 56 DTIEFLDEIVLKYLTVLPITIKEYERAKEIMRKYSVKPSDAFHIAVMLNNSINVILSEDK 115
Query: 123 DFDRL-PLKRLWL 134
+ D++ +KR+W+
Sbjct: 116 ELDKVAEIKRIWI 128
>gi|11497685 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7482964|pir||A69258 conserved hypothetical protein
AF0065 - Archaeoglobus fulgidus
>gi|2650589|gb|AAB91168.1| (AE001102) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 137
Score = 98.3 bits (241), Expect = 3e-20
Identities = 48/135 (35%), Positives = 87/135 (63%), Gaps = 4/135 (2%)
Query: 1 MKLFLDTNILVYLALGSVDPSYETSIDEFYRDLMKGHELYTDVLVLDEFIYILKRKYGVP 60
MK+FLD N L+YL D ++ ++ + ++ ++L T++L +DE I+IL RKY +
Sbjct: 1 MKIFLDANYLIYLKYSESDEIFDYCVNLLRK--IEKYDLVTNMLAIDEVIWILNRKYKIE 58
Query: 61 YEKAITFIEETVIPVVKILPITFLDYLTAKDVMLKYKLKPSDAFHVAVIQNNGLQAIVSE 120
++ +++ ++ ++++PI DY K+ ML Y LKPSD+ H++ ++ +G+ IVSE
Sbjct: 59 LDEVFEYLDR-LLSFLRVVPIEAEDYDLMKEFMLGYNLKPSDSLHLSSMRRHGVSVIVSE 117
Query: 121 DEDFDRLP-LKRLWL 134
D DFDR+ +KR+W+
Sbjct: 118 DSDFDRVDWVKRVWI 132
>gb|AAK41936.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 90
Score = 86.6 bits (211), Expect = 1e-16
Identities = 40/83 (48%), Positives = 59/83 (70%), Gaps = 1/83 (1%)
Query: 54 KRKYGVPYEKAITFIEETVIPVVKILPITFLDYLTAKDVMLKYKLKPSDAFHVAVIQNNG 113
K+KY V +E I F+++ ++P ILPI DY AK +M+ LKPSDAFHVAV+ NN
Sbjct: 8 KKKYNVKFEDTIDFLDKIILPYTIILPINSHDYEKAKGIMISKTLKPSDAFHVAVMINNS 67
Query: 114 LQAIVSEDEDFDRL-PLKRLWLR 135
++ IVSED DFD++ ++R+W++
Sbjct: 68 IKKIVSEDSDFDKINGIERIWVK 90
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.145 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49701017
Number of Sequences: 2977
Number of extensions: 1926984
Number of successful extensions: 4064
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4056
Number of HSP's gapped (non-prelim): 5
length of query: 136
length of database: 189,106,746
effective HSP length: 51
effective length of query: 85
effective length of database: 158,583,909
effective search space: 13479632265
effective search space used: 13479632265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)