BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1217 (PAB1217) DE:Hypothetical protein
(247 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75023 hypothetical protein PAB1217 - Pyrococcus abyssi (st... 487 e-137
pir||F71116 hypothetical protein PH0701 - Pyrococcus horikoshii ... 156 3e-37
pir||D71199 hypothetical protein PH1865 - Pyrococcus horikoshii ... 154 8e-37
pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii ... 69 6e-11
>pir||D75023 hypothetical protein PAB1217 - Pyrococcus abyssi (strain Orsay)
>gi|5459140|emb|CAB50626.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 247
Score = 487 bits (1240), Expect = e-137
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MEPQEFERYIGATFVDKALCYDVILHSSYEPIDLIFYMVLNALKEREIPYIIVDIMDQLS 60
MEPQEFERYIGATFVDKALCYDVILHSSYEPIDLIFYMVLNALKEREIPYIIVDIMDQLS
Sbjct: 1 MEPQEFERYIGATFVDKALCYDVILHSSYEPIDLIFYMVLNALKEREIPYIIVDIMDQLS 60
Query: 61 VLRNHLRLLGLKTDVIDSAKVVKLGGFIKTGNVVKRIEIGSDIGVWRKQLFITLEKHGEK 120
VLRNHLRLLGLKTDVIDSAKVVKLGGFIKTGNVVKRIEIGSDIGVWRKQLFITLEKHGEK
Sbjct: 61 VLRNHLRLLGLKTDVIDSAKVVKLGGFIKTGNVVKRIEIGSDIGVWRKQLFITLEKHGEK 120
Query: 121 DGFTINVGLERLLKTMENNYIESELFFTLVGKMALQDPNGKGIVFINSSFLKKDIVLELI 180
DGFTINVGLERLLKTMENNYIESELFFTLVGKMALQDPNGKGIVFINSSFLKKDIVLELI
Sbjct: 121 DGFTINVGLERLLKTMENNYIESELFFTLVGKMALQDPNGKGIVFINSSFLKKDIVLELI 180
Query: 181 ELASRVFRVKISGVLGSYKLIIRPIKSINFMELEEELVVDLKDLPGYLLRYGNIRRSESF 240
ELASRVFRVKISGVLGSYKLIIRPIKSINFMELEEELVVDLKDLPGYLLRYGNIRRSESF
Sbjct: 181 ELASRVFRVKISGVLGSYKLIIRPIKSINFMELEEELVVDLKDLPGYLLRYGNIRRSESF 240
Query: 241 GIEVTPE 247
GIEVTPE
Sbjct: 241 GIEVTPE 247
>pir||F71116 hypothetical protein PH0701 - Pyrococcus horikoshii
>gi|3257109|dbj|BAA29792.1| (AP000003) 236aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 236
Score = 156 bits (390), Expect = 3e-37
Identities = 83/210 (39%), Positives = 132/210 (62%), Gaps = 3/210 (1%)
Query: 22 DVILHSSYEPIDLIFYMVLNALKEREIPYIIVDIMDQLSVLRNHLRLLGLKTDVIDSAKV 81
D+I + S E +FY+++ LKER P II+DI+DQL V+R L L G+K ++ID ++V
Sbjct: 24 DIIEYESPELTPFLFYLIVKRLKERNSPIIILDILDQLHVIRTLLELSGIKPEIIDESEV 83
Query: 82 VKLGGFIKTGNVVKRIEIGSDIGVWRKQLFITLEK--HGEKDGFTINVGLERLLKTMENN 139
+KLGGF+KTG V++RI++ DI + R + T+++ + I +G E++++ E +
Sbjct: 84 IKLGGFLKTGKVIERIDVHKDIMILRDKFLRTIQELTKNREHVILIGIGAEKMVRIYERD 143
Query: 140 YIESELFFTLVGKMALQDPNGKGIVFINSSFLKKDIVLELIELASRVFRVKISGVLG-SY 198
+E E FF L+G+ L D I+F+N S L K V+EL ELASRVF +K+ G +G
Sbjct: 144 PMEFEYFFALIGRAMLGDKRLSRIIFLNKSLLDKKTVIELEELASRVFEIKLIGEVGIGR 203
Query: 199 KLIIRPIKSINFMELEEELVVDLKDLPGYL 228
+L R KS++F E EE+ + ++D +L
Sbjct: 204 ELAFRIKKSLHFNEYGEEIRIKVQDFQKHL 233
>pir||D71199 hypothetical protein PH1865 - Pyrococcus horikoshii
>gi|3258304|dbj|BAA30987.1| (AP000007) 237aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 237
Score = 154 bits (386), Expect = 8e-37
Identities = 83/210 (39%), Positives = 132/210 (62%), Gaps = 4/210 (1%)
Query: 23 VILHSSYEPIDLIFYMVLNALKEREIPYIIVDIMDQLSVLRNHLRLLGLKTDVIDSAKVV 82
+I ++S EP+ L FY+++ L E IP+ ++D++D L +++ +L+L G+ T +ID AKV+
Sbjct: 25 LITYTSEEPVHLAFYILVKNLAESNIPFAVIDVLDHLHLIKVNLKLAGIDTSIIDKAKVI 84
Query: 83 KLGGFIKTGNVVKRIEIGSDIGVWRKQLFITLEKHGEKDG---FTINVGLERLLKTMENN 139
K+GGFI+TG +VKRI S+I V+ KQL + + G G I VG E++++ E +
Sbjct: 85 KVGGFIETGEIVKRISFDSEILVFGKQLNEMIMRLGASKGRPIIIIGVGAEKIVRMFEGS 144
Query: 140 YIESELFFTLVGKMALQDPNGKGIVFINSSFLKKDIVLELIELASRVFRVKISGVLG-SY 198
E E FF L+G+ L + + IVF+N+S L+K+ + E IELA+RVF +K+ G G
Sbjct: 145 PSELETFFALLGRAPLGNESFSRIVFLNTSLLQKEALYEFIELATRVFELKLEGEAGIDK 204
Query: 199 KLIIRPIKSINFMELEEELVVDLKDLPGYL 228
+L + +KS+ F E EEL V L +L
Sbjct: 205 RLSFKIVKSMKFEEYGEELKVSASTLQNHL 234
>pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii
>gi|3257271|dbj|BAA29954.1| (AP000003) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 68.7 bits (165), Expect = 6e-11
Identities = 50/186 (26%), Positives = 90/186 (47%), Gaps = 7/186 (3%)
Query: 26 HSSYEPIDLIFYMVLNALKEREIPYIIVDIMDQLSVLRNHLRLLGLKTDVIDSAKVVKLG 85
++S P+ I Y ++ +E+ P +I DI D L++ +LG+K + + A +VK+G
Sbjct: 21 YNSTTPLLFIVYPLIKWAREKGYPLVIFDIFDSLTIYTKQAEMLGIKDKLYEGANIVKIG 80
Query: 86 GFIKTGNVVKRIEIGSDIGVWRKQLFITLEK-HGEKDG-FTINVGLERLLKTMENNYIES 143
G + GN++ +I I + G + K L TLEK +GE++ +I +G E++
Sbjct: 81 GRMNLGNIILKISI-IEYGPFEKTLEDTLEKAYGERENVISIVLGTEKIFSFYP---FRD 136
Query: 144 ELFFTLVGKMALQDPNGKGIVFINSSFLKKDIVLELIELASRVFRVKISGVLGSYKLIIR 203
+ F+ + D K F+N L+K I + L F + K+ ++
Sbjct: 137 QFMFSNFLALKTGDRRRKAFYFVNVDLLEK-ISPPMGPLLEEEFTTVVKLTKEDNKIKMK 195
Query: 204 PIKSIN 209
IKS+N
Sbjct: 196 VIKSLN 201
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.145 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87522670
Number of Sequences: 2977
Number of extensions: 3495094
Number of successful extensions: 7974
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7967
Number of HSP's gapped (non-prelim): 4
length of query: 247
length of database: 189,106,746
effective HSP length: 54
effective length of query: 193
effective length of database: 156,788,448
effective search space: 30260170464
effective search space used: 30260170464
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)