BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1221 (rpl44E) DE:LSU ribosomal protein L44E (rpl44E)
(94 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75022 lsu ribosomal protein l44e (rpl44e) PAB1221 - Pyroco... 203 4e-52
sp|O59603|RL44_PYRHO 50S RIBOSOMAL PROTEIN L44E >gi|7447256|pir|... 194 3e-49
sp|P54027|RL44_METJA 50S RIBOSOMAL PROTEIN L44E >gi|2129258|pir|... 130 4e-30
emb|CAC12330.1| (AL445066) 50S ribosomal protein L44 related pro... 130 5e-30
sp|O27365|RL44_METTH 50S RIBOSOMAL PROTEIN L44E >gi|7447257|pir|... 113 5e-25
gi|11498931 LSU ribosomal protein L44E (rpl44E) [Archaeoglobus f... 84 4e-16
gb|AAK41312.1| LSU ribosomal protein L44E (rpl44E) [Sulfolobus s... 80 5e-15
gb|AAF87576.1|AF271208_1 (AF271208) putative large subunit ribos... 68 2e-11
pir||T37718 60s ribosomal protein l44 - fission yeast (Schizosa... 66 8e-11
>pir||F75022 lsu ribosomal protein l44e (rpl44e) PAB1221 - Pyrococcus abyssi
(strain Orsay) >gi|5459134|emb|CAB50620.1| (AJ248288)
LSU ribosomal protein L44E (rpl44E) [Pyrococcus abyssi]
Length = 94
Score = 203 bits (511), Expect = 4e-52
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREK 60
MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREK
Sbjct: 1 MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREK 60
Query: 61 PVKKLDLRFRCTVCGKAHTRGRGFRVKKFELVEV 94
PVKKLDLRFRCTVCGKAHTRGRGFRVKKFELVEV
Sbjct: 61 PVKKLDLRFRCTVCGKAHTRGRGFRVKKFELVEV 94
>sp|O59603|RL44_PYRHO 50S RIBOSOMAL PROTEIN L44E >gi|7447256|pir||D71209 probable
ribosomal protein L44 - Pyrococcus horikoshii
>gi|3258384|dbj|BAA31067.1| (AP000007) 109aa long
hypothetical 50S ribosomal protein L44 [Pyrococcus
horikoshii]
Length = 109
Score = 194 bits (487), Expect = 3e-49
Identities = 87/94 (92%), Positives = 93/94 (98%)
Query: 1 MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREK 60
MKYPKQIRTYCP+CKRHTIHKVERVK+RPRSELSAGQRRFRR+LKGYGGFPRPKPEGREK
Sbjct: 16 MKYPKQIRTYCPYCKRHTIHKVERVKRRPRSELSAGQRRFRRVLKGYGGFPRPKPEGREK 75
Query: 61 PVKKLDLRFRCTVCGKAHTRGRGFRVKKFELVEV 94
PVKKLDLRF CTVCG+AHTRG+GFRVK+FELVEV
Sbjct: 76 PVKKLDLRFVCTVCGRAHTRGKGFRVKRFELVEV 109
>sp|P54027|RL44_METJA 50S RIBOSOMAL PROTEIN L44E >gi|2129258|pir||B64331 ribosomal
protein L36a.eR [similarity] - Methanococcus jannaschii
>gi|1499028|gb|AAB98236.1| (U67480) LSU ribosomal
protein L44E [Methanococcus jannaschii]
Length = 94
Score = 130 bits (324), Expect = 4e-30
Identities = 60/94 (63%), Positives = 73/94 (76%), Gaps = 2/94 (2%)
Query: 1 MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREK 60
MK PK++R YCP+CK+HTIH VE+ KK SEL+ GQR+FRR+ GYGGFPRP P+ R K
Sbjct: 1 MKIPKKVRRYCPYCKKHTIHIVEKAKKGKPSELTWGQRQFRRVTAGYGGFPRPLPD-RSK 59
Query: 61 PVKKLDLRFRCTVCGKAHTRGRG-FRVKKFELVE 93
PVKK+DLRF+CT CGK HT+ G FR +FE VE
Sbjct: 60 PVKKIDLRFKCTECGKMHTKANGCFRSGRFEFVE 93
>emb|CAC12330.1| (AL445066) 50S ribosomal protein L44 related protein
[Thermoplasma acidophilum]
Length = 93
Score = 130 bits (323), Expect = 5e-30
Identities = 62/93 (66%), Positives = 70/93 (74%), Gaps = 1/93 (1%)
Query: 1 MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREK 60
MK PK+I TYCP+CK+HT H VERV+KR SEL AGQRRFRR+ GYGGFPRPK EGREK
Sbjct: 1 MKMPKKIMTYCPYCKKHTSHSVERVRKRKASELKAGQRRFRRVTSGYGGFPRPKFEGREK 60
Query: 61 PVKKLDLRFRCTVCGKAHTRGRGFRVKKFELVE 93
P K++ LR C C KA T G R KKFE+VE
Sbjct: 61 PTKRIALRLVCDECHKAIT-PPGIRAKKFEIVE 92
>sp|O27365|RL44_METTH 50S RIBOSOMAL PROTEIN L44E >gi|7447257|pir||B69041 ribosomal
protein L36a - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622415|gb|AAB85788.1| (AE000895)
ribosomal protein L36a [Methanobacterium
thermoautotrophicum]
Length = 92
Score = 113 bits (280), Expect = 5e-25
Identities = 51/92 (55%), Positives = 65/92 (70%), Gaps = 1/92 (1%)
Query: 1 MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREK 60
MK PK+ RTYCP C++HT+H+V K+R SEL GQR+FRR+ GY G+PRP P G K
Sbjct: 1 MKIPKERRTYCPNCRKHTVHEVLESKRRKASELKWGQRQFRRVTAGYRGYPRPLPSG-NK 59
Query: 61 PVKKLDLRFRCTVCGKAHTRGRGFRVKKFELV 92
PVKKLDLR +C CGK+H + + FR + E V
Sbjct: 60 PVKKLDLRLKCKECGKSHIKKKSFRAGRVEYV 91
>gi|11498931 LSU ribosomal protein L44E (rpl44E) [Archaeoglobus fulgidus]
>gi|6094078|sp|O28936|RL44_ARCFU 50S RIBOSOMAL PROTEIN
L44E >gi|7447255|pir||D69416 LSU ribosomal protein L44E
(rpl44E) homolog - Archaeoglobus fulgidus
>gi|2649238|gb|AAB89909.1| (AE001011) LSU ribosomal
protein L44E (rpl44E) [Archaeoglobus fulgidus]
Length = 93
Score = 83.9 bits (204), Expect = 4e-16
Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 1 MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREK 60
MKYPK+++T+C +C +HT+H+VERV K S L+ R+ +R K K G +K
Sbjct: 1 MKYPKKVKTFCRYCGKHTLHEVERVSKGKASSLNWINRQKKRRGKVGNLGKFSKVPGGDK 60
Query: 61 PVKKLDLRFRCTVCGKAHTRGRGFRVKKFELVE 93
P K++++RFRCT C KAH R +R K+FEL+E
Sbjct: 61 PTKRVNIRFRCTECKKAHHRPT-WRAKRFELIE 92
>gb|AAK41312.1| LSU ribosomal protein L44E (rpl44E) [Sulfolobus solfataricus]
Length = 95
Score = 80.4 bits (195), Expect = 5e-15
Identities = 44/94 (46%), Positives = 52/94 (54%), Gaps = 1/94 (1%)
Query: 1 MKYPKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREK 60
MK PK I TYCP CK HT H V K R L+ GQRR+ R GYG +P+ + K
Sbjct: 1 MKVPKVISTYCPKCKTHTDHSVSLYKSGKRRNLAEGQRRYERKNIGYGSKRKPEQKRFAK 60
Query: 61 PVKKLDLRFRCTVCGKAHTRGRGFRVKKFELVEV 94
KK L +C+ CG + G RVKK ELVEV
Sbjct: 61 VTKKQTLVLKCSKCGYTIVK-EGIRVKKLELVEV 93
>gb|AAF87576.1|AF271208_1 (AF271208) putative large subunit ribosomal protein rpL44 [Aedes
triseriatus]
Length = 104
Score = 68.3 bits (164), Expect = 2e-11
Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 PKQIRTYCPFCKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREKPVK 63
PKQ RTYC CK H +HKV + KK + S G+RR+ R KG+GG +P + K K
Sbjct: 5 PKQRRTYCKKCKVHRVHKVTQYKKSKERKASQGRRRYDRKQKGFGGQTKPIFRKKAKTTK 64
Query: 64 KLDLRFRCTVCGKAHTRGRGFRVKKFEL 91
K+ LR C C K + R K FEL
Sbjct: 65 KIVLRMECVDC-KYRKQTPLKRCKHFEL 91
>pir||T37718 60s ribosomal protein l44 - fission yeast (Schizosaccharomyces
pombe) >gi|5725408|emb|CAB52422.1| (AL109770) 60s
ribosomal protein l44 [Schizosaccharomyces pombe]
Length = 106
Score = 66.3 bits (159), Expect = 8e-11
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 4 PKQIRTYCPF--CKRHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREKP 61
PK +TYCP C++HT+H+V + KK P S+L+ G+RR+ R G+GG +P + K
Sbjct: 5 PKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKV 64
Query: 62 VKKLDLRFRCTVC 74
KK+ LR C C
Sbjct: 65 TKKVVLRLECVSC 77
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.145 0.459
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38340134
Number of Sequences: 2977
Number of extensions: 1549962
Number of successful extensions: 5399
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5386
Number of HSP's gapped (non-prelim): 9
length of query: 94
length of database: 189,106,746
effective HSP length: 45
effective length of query: 49
effective length of database: 162,174,831
effective search space: 7946566719
effective search space used: 7946566719
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 159 (66.3 bits)