BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1223 (PAB1223) DE:Hypothetical protein
         (247 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75022 hypothetical protein PAB1223 - Pyrococcus abyssi (st...   513  e-144
pir||A71209 hypothetical protein PH1937 - Pyrococcus horikoshii ...   363  1e-99

>pir||B75022 hypothetical protein PAB1223 - Pyrococcus abyssi (strain Orsay)
           >gi|5459130|emb|CAB50616.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 247
           
 Score =  513 bits (1306), Expect = e-144
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MRPVFIGVGNHGIRIVLSVKCGGCKRVPINPNGYIFTRDLFIKKLEELLWGLEKNSHVWI 60
           MRPVFIGVGNHGIRIVLSVKCGGCKRVPINPNGYIFTRDLFIKKLEELLWGLEKNSHVWI
Sbjct: 1   MRPVFIGVGNHGIRIVLSVKCGGCKRVPINPNGYIFTRDLFIKKLEELLWGLEKNSHVWI 60

Query: 61  IFEEKQINTRIVEEILDRAPGDLLKFAYVLSPGKELVFEEKPSWASYFETVFYDSLWEFL 120
           IFEEKQINTRIVEEILDRAPGDLLKFAYVLSPGKELVFEEKPSWASYFETVFYDSLWEFL
Sbjct: 61  IFEEKQINTRIVEEILDRAPGDLLKFAYVLSPGKELVFEEKPSWASYFETVFYDSLWEFL 120

Query: 121 KGKEKKPLWQAYNEATLSIGEMFSKLYYYLKTQMLVNVDMADFMQIVRGGNVGILRILRT 180
           KGKEKKPLWQAYNEATLSIGEMFSKLYYYLKTQMLVNVDMADFMQIVRGGNVGILRILRT
Sbjct: 121 KGKEKKPLWQAYNEATLSIGEMFSKLYYYLKTQMLVNVDMADFMQIVRGGNVGILRILRT 180

Query: 181 VDFEWHWGIWERGLINILAGKDISLEKVMGILSRFQEILKDKDVIWGVKTDEGIRGVEVL 240
           VDFEWHWGIWERGLINILAGKDISLEKVMGILSRFQEILKDKDVIWGVKTDEGIRGVEVL
Sbjct: 181 VDFEWHWGIWERGLINILAGKDISLEKVMGILSRFQEILKDKDVIWGVKTDEGIRGVEVL 240

Query: 241 ALLVRRW 247
           ALLVRRW
Sbjct: 241 ALLVRRW 247


>pir||A71209 hypothetical protein PH1937 - Pyrococcus horikoshii
           >gi|3258381|dbj|BAA31064.1| (AP000007) 245aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 245
           
 Score =  363 bits (922), Expect = 1e-99
 Identities = 162/247 (65%), Positives = 206/247 (82%), Gaps = 2/247 (0%)

Query: 1   MRPVFIGVGNHGIRIVLSVKCGGCKRVPINPNGYIFTRDLFIKKLEELLWGLEKNSHVWI 60
           M P+F+G+G +G RI  S++ G  KR+ INP GY+F ++ F++KLE++LWG+++NS +W+
Sbjct: 1   MEPIFVGIGGYGTRIAFSIRYG--KRIYINPTGYLFLKNEFLEKLEDILWGIQQNSTLWL 58

Query: 61  IFEEKQINTRIVEEILDRAPGDLLKFAYVLSPGKELVFEEKPSWASYFETVFYDSLWEFL 120
           IFE K IN  IV EI++RAP D+++FAYV+SPGKELV EEKP WA  FETVFYDSLWEFL
Sbjct: 59  IFENKGINVDIVNEIIERAPNDVVRFAYVISPGKELVLEEKPQWAEDFETVFYDSLWEFL 118

Query: 121 KGKEKKPLWQAYNEATLSIGEMFSKLYYYLKTQMLVNVDMADFMQIVRGGNVGILRILRT 180
           KGKEKKP+W+AY+EA L+IG MF+KLY YL +QMLVNVD ADF+QI +GGNVGILR+L  
Sbjct: 119 KGKEKKPIWKAYDEAALAIGNMFTKLYEYLNSQMLVNVDFADFIQITKGGNVGILRLLNN 178

Query: 181 VDFEWHWGIWERGLINILAGKDISLEKVMGILSRFQEILKDKDVIWGVKTDEGIRGVEVL 240
           V+FEWHWG+WERGLINILA K + LE V  IL+RFQEILK+KD+IWGVK DE I  +E+L
Sbjct: 179 VNFEWHWGVWERGLINILANKSVPLESVTKILARFQEILKEKDIIWGVKMDESIENLEIL 238

Query: 241 ALLVRRW 247
           ALLV++W
Sbjct: 239 ALLVKKW 245


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.144    0.453 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98052953
Number of Sequences: 2977
Number of extensions: 4170144
Number of successful extensions: 8650
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8646
Number of HSP's gapped (non-prelim): 2
length of query: 247
length of database: 189,106,746
effective HSP length: 49
effective length of query: 198
effective length of database: 159,780,883
effective search space: 31636614834
effective search space used: 31636614834
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 164 (68.3 bits)