BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1224 (PAB1224) DE:Hypothetical protein
         (216 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75022 hypothetical protein PAB1224 - Pyrococcus abyssi (st...   430  e-120
pir||H71208 hypothetical protein PH1936 - Pyrococcus horikoshii ...   319  2e-86
pir||G71045 hypothetical protein PH1655 - Pyrococcus horikoshii ...   101  1e-20
pir||E75169 hypothetical protein PAB2019 - Pyrococcus abyssi (st...   101  1e-20
dbj|BAB05874.1| (AP001514) unknown conserved protein [Bacillus h...    89  4e-17
pir||D82438 conserved hypothetical protein VCA0608 [imported] - ...    83  3e-15
gb|AAG19573.1| (AE005047) Vng1202c [Halobacterium sp. NRC-1]           82  6e-15
pir||B82361 conserved hypothetical protein VC0129 [imported] - V...    81  1e-14
pir||D71157 probable haloacid dehalogenase (EC 3.8.1.-) PH0459 [...    80  2e-14
dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillu...    79  4e-14
pir||B82987 probable hydrolase PA5281 [imported] - Pseudomonas a...    79  5e-14
sp|P33999|YJJG_ECOLI HYPOTHETICAL 25.3 KD PROTEIN IN RIMI-PRFC I...    78  6e-14
pir||G70044 histidine-containing protein P-Ser-HPr phosphatase (...    78  8e-14
pir||B69983 conserved hypothetical protein ysaA - Bacillus subti...    76  2e-13
pir||D72286 conserved hypothetical protein - Thermotoga maritima...    76  2e-13
pir||E75005 probable haloacid dehalogenase (EC 3.8.1.-) PAB1316 ...    76  2e-13
gb|AAF46077.2| (AE003435) CG15771 gene product [Drosophila melan...    76  4e-13
pir||F71249 hypothetical protein PH0253 - Pyrococcus horikoshii ...    75  7e-13
pir||F69125 conserved hypothetical protein MTH209 - Methanobacte...    72  5e-12
pir||H72277 hypothetical protein TM1254 - Thermotoga maritima (s...    71  1e-11
pir||F75213 hypothetical protein PAB2197 - Pyrococcus abyssi (st...    69  3e-11
pir||C75253 hydrolase, CbbY/CbbZ/GpH/YieH family - Deinococcus r...    68  9e-11

>pir||A75022 hypothetical protein PAB1224 - Pyrococcus abyssi (strain Orsay)
           >gi|5459129|emb|CAB50615.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 216
           
 Score =  430 bits (1093), Expect = e-120
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH 60
           MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH
Sbjct: 1   MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH 60

Query: 61  DWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPRYQILKLK 120
           DWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPRYQILKLK
Sbjct: 61  DWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPRYQILKLK 120

Query: 121 VSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGI 180
           VSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGI
Sbjct: 121 VSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGI 180

Query: 181 KTVWINQKGDNGYNLPDFEISSISELLEVLEDEGDI 216
           KTVWINQKGDNGYNLPDFEISSISELLEVLEDEGDI
Sbjct: 181 KTVWINQKGDNGYNLPDFEISSISELLEVLEDEGDI 216


>pir||H71208 hypothetical protein PH1936 - Pyrococcus horikoshii
           >gi|3258380|dbj|BAA31063.1| (AP000007) 217aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 217
           
 Score =  319 bits (808), Expect = 2e-86
 Identities = 148/217 (68%), Positives = 185/217 (85%), Gaps = 1/217 (0%)

Query: 1   MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH 60
           MV+A+LFD+D TL+SE+PL++FILPQVY+ LA +LN+S+ EAR IFL EIE+ +G+YEWH
Sbjct: 1   MVKAVLFDIDGTLLSEKPLIMFILPQVYDELANKLNISRMEARRIFLSEIEKRKGKYEWH 60

Query: 61  DWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREK-YRLAIVTSGPRYQILKL 119
           DWN+FFR FSLPFK+E+ I+ YP KI V PGV + L+ L+E+ YRL IVTSGPRYQ+LKL
Sbjct: 61  DWNFFFRLFSLPFKYEDFIMKYPTKIEVFPGVVEVLKYLKERGYRLGIVTSGPRYQVLKL 120

Query: 120 KVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALG 179
           KVSG+  YFD V+TRDDV +IKP P+IF+AALE+LK+ P  AVMVGDSLEQD+LGAK +G
Sbjct: 121 KVSGIYRYFDVVVTRDDVGSIKPEPRIFLAALEKLKISPKDAVMVGDSLEQDILGAKGVG 180

Query: 180 IKTVWINQKGDNGYNLPDFEISSISELLEVLEDEGDI 216
           +K+VWIN  G+NGYNLPDFEISSI +L EV+EDE DI
Sbjct: 181 MKSVWINVGGENGYNLPDFEISSILQLPEVIEDESDI 217


>pir||G71045 hypothetical protein PH1655 - Pyrococcus horikoshii
           >gi|3258084|dbj|BAA30767.1| (AP000006) 241aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 241
           
 Score =  101 bits (248), Expect = 1e-20
 Identities = 77/228 (33%), Positives = 113/228 (48%), Gaps = 16/228 (7%)

Query: 1   MVRAILFDLDETLISERPLVLFILPQVYEILAKR-LNVSKSEAREIFLGEIERMRGRYEW 59
           MV+ I FDLD+TL+    L         E + +  L V    A    +  I+     + +
Sbjct: 1   MVKVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPY 60

Query: 60  HDWNYFFRRFSLPFKFEEL---ILSYPEK----ITVLPGVRDTLEILREK-YRLAIVTSG 111
           H ++Y  RR  LP+  + +   +++Y       +  +PG R  L  L+E  Y L I+T G
Sbjct: 61  H-FDYLLRRLDLPYNPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITDG 119

Query: 112 -PRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQ 170
            P  Q  K+    L D+F+ VI  D     KP+PKIF  AL+   V+P +A+MVGD L  
Sbjct: 120 NPVKQWEKILRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALMVGDRLYS 179

Query: 171 DVLGAKALGIKTVWINQKGDNGYNL-----PDFEISSISELLEVLEDE 213
           D+ GAK +G+KTVW      +   L      D+EI ++  LLEVL  E
Sbjct: 180 DIYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESLLEVLARE 227


>pir||E75169 hypothetical protein PAB2019 - Pyrococcus abyssi (strain Orsay)
           >gi|5457946|emb|CAB49436.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 238
           
 Score =  101 bits (248), Expect = 1e-20
 Identities = 76/230 (33%), Positives = 116/230 (50%), Gaps = 20/230 (8%)

Query: 1   MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH 60
           M++ I FDLD+TL+    L         E + +       E     L E+ +  G    H
Sbjct: 1   MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH 60

Query: 61  DWNYFFRRFSLPFKFEEL---ILSYPEK----ITVLPGVRDTLEILREK-YRLAIVTSGP 112
            ++Y  RR  LP+  + +   +++Y       +  +PG R  L  LRE  YRL I+T G 
Sbjct: 61  HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN 120

Query: 113 RYQ----ILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSL 168
             +    IL+L++    D+F+ VI  D     KP+PKIF  AL+   V+  +A+MVGD L
Sbjct: 121 PVKQWEKILRLEID---DFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRL 177

Query: 169 EQDVLGAKALGIKTVWIN----QKGDNGY-NLPDFEISSISELLEVLEDE 213
             D+ GAK +G+KTVW       K +  Y    D+EI  + +LL+V+E+E
Sbjct: 178 YSDIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENE 227


>dbj|BAB05874.1| (AP001514) unknown conserved protein [Bacillus halodurans]
           Length = 267
           
 Score = 88.9 bits (217), Expect = 4e-17
 Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 47/258 (18%)

Query: 1   MVRAILFDLDETLISERPLV--LFILPQVYEILAKRLNVSKSE------AREIFLG---- 48
           MV+AI+FDLD+TL+ ++  V   F+    Y    + L+    E      ARE++      
Sbjct: 1   MVKAIIFDLDDTLLWDKKSVKEAFVATCQYAATKRSLDPEALEESVREVARELYASYETY 60

Query: 49  EIERMRG--------------------------RYEWHDWNYFFRRFSLPFKF--EELIL 80
           E  +M G                           Y    W     +  +  +   EEL  
Sbjct: 61  EFTQMIGINPFEGLWGQFLDDNDHFRKMKEIVPTYRKDAWTQGLAKLGIEDQALGEELAE 120

Query: 81  SYPEKITVLPGVRD----TLEILREKYRLAIVTSG-PRYQILKLKVSG-LLDYFDAVITR 134
            +PE+    P V +     L+ L+  Y+L ++T+G P  Q  KL ++  L+ YFD ++  
Sbjct: 121 RFPEERKKHPFVYEETFRVLDQLKGNYQLLLLTNGSPHLQQTKLDITPELVPYFDHIVIS 180

Query: 135 DDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGIKTVWIN-QKGDNGY 193
                 KP+P IF  AL  L +  ++A+MVGD+L  D+LGA  +GIK+VWIN ++ + G 
Sbjct: 181 GGFGRGKPDPSIFEHALSLLSLTKDEAIMVGDNLMTDILGASRVGIKSVWINREQKEQGE 240

Query: 194 NLPDFEISSISELLEVLE 211
             P +EI  + +LL++L+
Sbjct: 241 VEPTYEIEHLEQLLDILK 258


>pir||D82438 conserved hypothetical protein VCA0608 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9658020|gb|AAF96509.1|
           (AE004391) conserved hypothetical protein [Vibrio
           cholerae]
           Length = 224
           
 Score = 82.7 bits (201), Expect = 3e-15
 Identities = 46/128 (35%), Positives = 76/128 (58%), Gaps = 4/128 (3%)

Query: 87  TVLPGVRDTLEILREKYRLAIVTSG-PRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPK 145
           T+LPG  + ++ L+ K RL I+T+G    Q ++L  +G+ D+FD ++  ++V   KP+  
Sbjct: 95  TLLPGAMELMQALQGKARLGIITNGFTELQDVRLAKTGMTDFFDQIVISEEVGIAKPDAG 154

Query: 146 IFIAALERL-KVEPNKAVMVGDSLEQDVLGAKALGIKTVWIN--QKGDNGYNLPDFEISS 202
           IF  ALER+     ++ +MVGD+   D+LG    GI+T W+N  Q        P +E++S
Sbjct: 155 IFAHALERMGNPTKSRVLMVGDNPHSDILGGLNFGIETCWLNVHQHPKPDGITPHYEVTS 214

Query: 203 ISELLEVL 210
           + EL E+L
Sbjct: 215 LHELREIL 222


>gb|AAG19573.1| (AE005047) Vng1202c [Halobacterium sp. NRC-1]
           Length = 232
           
 Score = 81.9 bits (199), Expect = 6e-15
 Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 26/230 (11%)

Query: 4   AILFDLDETLISERPLVLFILPQVYEILAKR-LNVSK-------SEAREIFLGEIERMRG 55
           A+  DLD TL   +P         +E    R  +VS+       S AR     E+     
Sbjct: 5   AVFVDLDNTLYPYQPCNEAGQQAAWETATDRGYDVSRAAFESLYSRARAAVKREVSETAS 64

Query: 56  RYEWHDWNYFFRRF-----SLPFKFEELILS------YPEKITVLPGVRDTLEILREK-Y 103
               HD   +F+R        P   + L L+      Y + +++  GVR+TL+ LR+   
Sbjct: 65  A---HDRGLYFKRAIELQAGTPNAADALALADAYWDAYIDALSLFDGVRETLDRLRDAGL 121

Query: 104 RLAIVTS-GPRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAV 162
            +A+VT+   R Q+ KL  +GL D  D V+T  +V   KP   +F   L RL V P  AV
Sbjct: 122 DVAVVTNLTTRVQLRKLAATGLADRVDCVLTSQEVGREKPASVMFTVPLARLGVAPADAV 181

Query: 163 MVGDSLEQDVLGAKALGIKTVWIN--QKGDNGYNLPDFEISSISELLEVL 210
           MVGDS+  DV+GA  +G+ +V  N  + G  G   PD  I S  ++ +V+
Sbjct: 182 MVGDSVASDVVGANGVGLTSVLCNNDRTGLTGRESPDHRIESFRDVTDVV 231


>pir||B82361 conserved hypothetical protein VC0129 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9654529|gb|AAF93306.1|
           (AE004103) conserved hypothetical protein [Vibrio
           cholerae]
           Length = 239
           
 Score = 80.8 bits (196), Expect = 1e-14
 Identities = 65/233 (27%), Positives = 106/233 (44%), Gaps = 28/233 (12%)

Query: 2   VRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRY--EW 59
           ++A+ FDLD+TL   RP++  +  +V E L     ++ +     +L     +  R+  + 
Sbjct: 10  IQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHPITATRPLAWWLAMKRDIARRFPEQC 69

Query: 60  HD---WNYFFRRFSL-------------PFKFEELILSYPEKITVLPGVRDTLEILREKY 103
           HD   W Y   +  L               +  E ++ +  ++ V       L  L  K 
Sbjct: 70  HDVSQWRYLQVQHGLLELGYAQPEAEQAASETLEQVMRWRNQVDVPAETHRVLAQLAAKV 129

Query: 104 RLAIVTSGPRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVM 163
            L  +T+G   QI K+ +SG   YF  V+        KP P +F  A ++L++EP   + 
Sbjct: 130 PLIAITNG-NVQIEKIGLSG---YFQTVLRAGPDGRAKPYPDLFAQAAQQLQLEPRSILH 185

Query: 164 VGDSLEQDVLGAKALGIKTVWINQKGDN------GYNLPDFEISSISELLEVL 210
           VGD L+ DVLGA+  G +  W N +G +         LPD EI  +SELL ++
Sbjct: 186 VGDHLQTDVLGARQNGFQACWFNDQGQSIRRLAKASVLPDVEIERLSELLLIV 238


>pir||D71157 probable haloacid dehalogenase (EC 3.8.1.-) PH0459 [similarity] -
           Pyrococcus horikoshii >gi|3256862|dbj|BAA29545.1|
           (AP000002) 232aa long hypothetical protein [Pyrococcus
           horikoshii]
           Length = 232
           
 Score = 80.4 bits (195), Expect = 2e-14
 Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 30/235 (12%)

Query: 1   MVRAILFDLDETLIS-----------------ERPLVLFILPQVYEILAKRL--NVSKSE 41
           M+RA+ FD   TL+S                 + PL    L   YE L +    N +   
Sbjct: 1   MIRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKP 60

Query: 42  AREIFLGEIERMRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKITVL-PGVRDTLEILR 100
            R I   E E MR   E + + Y       P  F E+ L   ++   L P V + L+ L+
Sbjct: 61  YRPIRDIEEEVMRKLAEKYGFKY-------PENFWEIHLRMHQRYGELYPEVVEVLKSLK 113

Query: 101 EKYRLAIVT-SGPRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPN 159
            KY + ++T S   Y +  L   G+ D FD++ T ++    KP+P+IF  AL++  V+  
Sbjct: 114 GKYHVGMITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGE 173

Query: 160 KAVMVGDSLEQDVLGAKALGIKTVWINQKGDNG--YNLPDFEISSISELLEVLED 212
           +AV VGD+  +D  G+K LG+ ++ +++KG+    ++  DF +S + E+++++++
Sbjct: 174 EAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDE 228


>dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillus halodurans]
           Length = 215
           
 Score = 79.2 bits (192), Expect = 4e-14
 Identities = 62/223 (27%), Positives = 112/223 (49%), Gaps = 29/223 (13%)

Query: 2   VRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWHD 61
           +  +LFDLD TLI+   L++      +E         + +A E     +           
Sbjct: 3   INTVLFDLDGTLINTNELIISSFLHTFETYYPG-KYGRKDAIECIGPPLTDS-------- 53

Query: 62  WNYFFRRFSLPFKFEELILSYPEK--------ITVLPGVRDTLEILREK-YRLAIVTSGP 112
               F+R   P + EE++ +Y +         +    GV +T++ L E+ ++LAIVT+  
Sbjct: 54  ----FKRLD-PERVEEMVATYRKHNHAHHDKLVEPYEGVYETVKTLHEQGFKLAIVTTKI 108

Query: 113 RYQILK-LKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQD 171
           R   +K LK+ GL ++FD ++  DDV+ +KPNP+    A+  L  +  + +MVGD+   D
Sbjct: 109 RETAMKGLKLFGLDEFFDVIVALDDVENVKPNPEPLEKAMNALGAKKEETIMVGDN-SHD 167

Query: 172 VLGAKALGIKTVWINQ--KGDNGYNL--PDFEISSISELLEVL 210
           +LG K  G+KT  +    +G++      PD+ + S+ +LL+++
Sbjct: 168 ILGGKNAGVKTAVVGYAIRGEDYVRQFDPDYVLRSMPDLLDIV 210


>pir||B82987 probable hydrolase PA5281 [imported] - Pseudomonas aeruginosa
           (strain PAO1) >gi|9951594|gb|AAG08666.1|AE004940_10
           (AE004940) probable hydrolase [Pseudomonas aeruginosa]
           Length = 232
           
 Score = 78.8 bits (191), Expect = 5e-14
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 6/136 (4%)

Query: 77  ELILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPRYQILKLKVSGLLDYFDAVITRDD 136
           ++ L    ++T+ P V  TLEIL +++ L ++T+G       ++  GL DYF   +  ++
Sbjct: 97  QVFLEARHRVTLFPEVHPTLEILADRFTLGVLTNGNA----DVRRLGLADYFRFALCAEE 152

Query: 137 VKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGIKTVWINQKGD--NGYN 194
           +   KP+P  F  AL+R  VE + A+ +GD    D+ GA+  G++ +W N  G    G  
Sbjct: 153 LGVGKPDPTPFREALKRAGVEASAAIHIGDHPSDDIAGARRAGMRAIWFNPSGKPWAGEE 212

Query: 195 LPDFEISSISELLEVL 210
            P  EI S++EL  +L
Sbjct: 213 EPSAEIRSLAELPALL 228


>sp|P33999|YJJG_ECOLI HYPOTHETICAL 25.3 KD PROTEIN IN RIMI-PRFC INTERGENIC REGION
           >gi|1361267|pir||S56598 hypothetical 22.2K protein
           (rimI-prfC intergenic region) - Escherichia coli
           >gi|537214|gb|AAA97270.1| (U14003) yjjG gene product
           [Escherichia coli] >gi|1790833|gb|AAC77327.1| (AE000507)
           putative phosphatase [Escherichia coli K12]
           Length = 225
           
 Score = 78.4 bits (190), Expect = 6e-14
 Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 27/225 (12%)

Query: 5   ILFDLDETLIS-------ERPLVLFILP------QVYEILAKRLNVSKSEAREIFLGEIE 51
           I FD DETL +       +R  + + +       Q Y+ + K L V         +  ++
Sbjct: 6   IFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGA---ITSLQ 62

Query: 52  RMRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKI-TVLPGVRDTLEILREKYRLAIVTS 110
              GR+E    ++  R    P K  E  ++   +I T LPG    L  +R   ++ I+T+
Sbjct: 63  LQHGRFE----SWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITN 118

Query: 111 G-PRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERL-KVEPNKAVMVGDSL 168
           G    Q ++L+ +GL DYFD ++  ++V   KPN KIF  ALE+    + ++ +MVGD+ 
Sbjct: 119 GFSALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTA 178

Query: 169 EQDVLGAKALGIKTVWIN---QKGDNGYNLPDFEISSISELLEVL 210
           E D+LG    G+ T W+N   ++   G   P + +SS+ EL ++L
Sbjct: 179 ESDILGGINAGLATCWLNAHHREQPEGI-APTWTVSSLHELEQLL 222


>pir||G70044 histidine-containing protein P-Ser-HPr phosphatase (EC 3.1.3.-)
           [validated] - Bacillus subtilis
           >gi|2618860|gb|AAC67289.1| (AF017113) HPr(Ser-P)
           phosphatase [Bacillus subtilis]
           >gi|2636010|emb|CAB15502.1| (Z99121) similar to
           phosphoglycolate phosphatase [Bacillus subtilis]
           Length = 216
           
 Score = 78.0 bits (189), Expect = 8e-14
 Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 41/229 (17%)

Query: 2   VRAILFDLDETLISERPLV----LFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRY 57
           V  ILFDLD TLI+   L+    L  L   Y    KR +V        F+G         
Sbjct: 6   VTTILFDLDGTLINTNELIIASFLHTLEHYYPSKYKREDVLA------FIGPS------- 52

Query: 58  EWHDWNYFFRRFSL--PFKFEELILSY--------PEKITVLPGVRDTLEILREK-YRLA 106
                   F  FS   P K E++I  Y           +T    V +TL+ L++  + L 
Sbjct: 53  -------LFDTFSSMDPDKCEDMIAMYRAYNHDMHDSLVTEYETVYETLDALKKAGFTLG 105

Query: 107 IVTSGPRYQI-LKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVG 165
           IVT+  R  + + LK++G+ ++F+ V+T DDV   KP+P+  + AL++L  EP +A+MVG
Sbjct: 106 IVTTKLRDTVNMGLKLTGIGEFFETVVTLDDVTNAKPDPEPVLLALKQLGSEPAEAIMVG 165

Query: 166 DSLEQDVLGAKALGIKTVWI--NQKGDN--GYNLPDFEISSISELLEVL 210
           D+   DVL  K  G KT  +    KG      + PDF +  +S+LL+++
Sbjct: 166 DNY-HDVLAGKNAGTKTAGVAWTIKGPEMLAKHEPDFMLEKMSDLLQIV 213


>pir||B69983 conserved hypothetical protein ysaA - Bacillus subtilis
           >gi|1770000|emb|CAA99609.1| (Z75208) hypothetical
           protein [Bacillus subtilis] >gi|2635359|emb|CAB14854.1|
           (Z99118) similar to hypothetical proteins [Bacillus
           subtilis]
           Length = 260
           
 Score = 76.5 bits (185), Expect = 2e-13
 Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 4/120 (3%)

Query: 96  LEILREKYRLAIVTSG-PRYQILKLK-VSGLLDYFDAVITRDDVKAIKPNPKIFIAALER 153
           L+ L+ KY L ++T+G P  Q  KL  V  L  YF+ ++        KP+  IF   L+ 
Sbjct: 140 LDQLKGKYELLLLTNGDPSLQKEKLAGVPELAPYFNEIVISGAFGKGKPDVSIFEHCLKL 199

Query: 154 LKVEPNKAVMVGDSLEQDVLGAKALGIKTVWINQ--KGDNGYNLPDFEISSISELLEVLE 211
           + +E + A+MVGD+L  D+LGA   GIKTVWIN+  K +     PD+ ISS+ +L  +LE
Sbjct: 200 MNIEKDDAIMVGDNLNTDILGASRAGIKTVWINRTDKKNETDVKPDYIISSLHDLFPILE 259


>pir||D72286 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981726|gb|AAD36252.1|AE001774_9 (AE001774)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 225
           
 Score = 76.5 bits (185), Expect = 2e-13
 Identities = 60/230 (26%), Positives = 116/230 (50%), Gaps = 25/230 (10%)

Query: 1   MVRAILFDLDETLIS---------ERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIE 51
           M + +LFDLD T++          +R  + + +P   + +     +++   + +  G++ 
Sbjct: 1   MKKGVLFDLDGTILDFEKSEDQALKRTFLKYGIPLTEDQVFLYREINRKWWKLLAEGKVS 60

Query: 52  R---MRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKIT----VLPGVRDTLEILREK-Y 103
           +   +  R+E      F +  ++P    ++   Y E ++     LPG  + LE L++K  
Sbjct: 61  KDVVVVARFE-----EFLKTLNIPLDPRKVAKDYLEFLSEEAHFLPGAEEFLERLKKKDL 115

Query: 104 RLAIVTSGPRYQILKLKVSGLLD-YFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAV 162
           R+A+VT+G R+   K      LD +F+ V+T ++    KP+P+IF  ALER+K++  + +
Sbjct: 116 RMAVVTNGVRFVQEKRSRKLKLDRFFEFVLTSEEAGVEKPDPRIFWLALERMKLKKEEVL 175

Query: 163 MVGDSLEQDVLGAKALGIKTVWINQKGDNGYNLPDFEISSISELLEVLED 212
            VGD    D+ GA+  GI  V  +  GD+  + P     +  EL +++E+
Sbjct: 176 YVGDDFSSDLEGARNAGIDFVLFSSDGDSSGDFP--VARNFKELEKIVEE 223


>pir||E75005 probable haloacid dehalogenase (EC 3.8.1.-) PAB1316 [similarity] -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458997|emb|CAB50483.1| (AJ248288) 2-HALOALKANOIC
           ACID DEHALOGENASE (EC 3.8.1.2 RELATED PROTEIN
           [Pyrococcus abyssi]
           Length = 229
           
 Score = 76.5 bits (185), Expect = 2e-13
 Identities = 66/236 (27%), Positives = 114/236 (47%), Gaps = 30/236 (12%)

Query: 1   MVRAILFDLDETLISERPLVLFILPQVYEILA-------KRLNVSKSEAREIFLG----- 48
           M+RA+ FD   TL+S     +  L  + E+L        K L   +   RE F       
Sbjct: 1   MIRAVFFDFVGTLLSSEGEAVTHLKIMEEVLKGYNLDPRKILEEYEKLTREAFSAYAGKP 60

Query: 49  -------EIERMRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKITVL-PGVRDTLEILR 100
                  E E MR   E + + Y       P  F E+ L   ++   L P V + L+ LR
Sbjct: 61  YRPIRDIEEEIMRKISEEYGFKY-------PENFWEIHLKMHQEYGKLYPEVVEVLKELR 113

Query: 101 EKYRLAIVT-SGPRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPN 159
           + Y + ++T S   Y    L+  G+ D FD++ T ++    KP+P+IF  AL +  V+  
Sbjct: 114 QSYHVGMITDSDTEYLNAHLEALGVRDLFDSITTSEEAGFFKPHPRIFEIALRKAGVKGE 173

Query: 160 KAVMVGDSLEQDVLGAKALGIKTVWINQKGDNG--YNLPDFEISSISELLEVLEDE 213
            AV VGD+  +D  GAK LG+ ++ +++ G+    ++  DF +S + E++++++ +
Sbjct: 174 DAVYVGDNPVKDCGGAKNLGMISILLDRTGEKKDLWDRCDFVVSDLREVIKIVKGQ 229


>gb|AAF46077.2| (AE003435) CG15771 gene product [Drosophila melanogaster]
           Length = 355
           
 Score = 75.7 bits (183), Expect = 4e-13
 Identities = 68/232 (29%), Positives = 107/232 (45%), Gaps = 26/232 (11%)

Query: 2   VRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMR-----GR 56
           +RA  FDLD TLI  R      + ++ + L  +   SK +A +     ++  R      +
Sbjct: 26  IRAFYFDLDNTLIPTRAGDSKAIRKLADFLETQYQFSKDDATQATQNFLKAFRRCPDNSQ 85

Query: 57  YEWHDWNYFFRRFSLPFKFEELILS-YPE------KITVLPG--VRDTLEILREKYRLAI 107
                W     R SLP + + L    YP+      +   +P   V+  L + +  Y LA+
Sbjct: 86  TSLDSWRTHLWRESLPARHKHLAEQIYPKWLKLRYRYLAVPADYVQLLLRMRQAGYALAL 145

Query: 108 VTSGPRY----QILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVM 163
           +T+GP      ++ +L V G   YFD V+   D+   KP+P+IF AA   L V+P + VM
Sbjct: 146 ITNGPSNAQWEKVAELNVRG---YFDCVLVSSDLPWEKPHPEIFYAACNFLNVKPQECVM 202

Query: 164 VGDSLEQDVLGA--KALGIKTVW--INQKGDNGYNLPDFEISSISELLEVLE 211
           +GD LE D+ G     LG+ T W  ++       +L D E     +L  +LE
Sbjct: 203 IGDKLETDIKGGHLAQLGL-TFWTPLSNSSAAAQSLEDVEYKPHVKLGSLLE 253


>pir||F71249 hypothetical protein PH0253 - Pyrococcus horikoshii
           >gi|3256642|dbj|BAA29325.1| (AP000001) 235aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 235
           
 Score = 74.9 bits (181), Expect = 7e-13
 Identities = 45/140 (32%), Positives = 81/140 (57%), Gaps = 8/140 (5%)

Query: 79  ILSYPEKITVLPGVRDTLEILREK-YRLAIVTS----GPRYQILKLKVSGLLDYFDAVIT 133
           IL+  E + VL G ++ L+ ++E+  + A++ +       Y  L L+  GL+++ D    
Sbjct: 92  ILNVDESL-VLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDKTFF 150

Query: 134 RDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGIKTVWINQKGDNGY 193
            D+V + KP  ++F   L   +V+P +++ +GD+  +D  GA+ +G+  VWINQ+GD   
Sbjct: 151 ADEVLSYKPRKEMFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVR 210

Query: 194 NLPD--FEISSISELLEVLE 211
            L +  FEI SI+ L +V+E
Sbjct: 211 KLEERGFEIPSIANLKDVIE 230


>pir||F69125 conserved hypothetical protein MTH209 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621255|gb|AAB84715.1| (AE000808) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 226
           
 Score = 72.2 bits (174), Expect = 5e-12
 Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 30/233 (12%)

Query: 1   MVRAILFDLDETLISERPLVLFILPQVYEILAKR-LNVSKSEAREIFLGEIERMRGRYEW 59
           M++A+ FD+D+TL                ++    L +++ EA ++    I      Y+ 
Sbjct: 1   MLKAVFFDIDDTLYDTSGFAKLARKAALNVMIDAGLPLTQEEAYKLLREIISEKGSNYDR 60

Query: 60  HDWNYFFRRFSLPFKFEE--------LILSYPEKITVL---PGVRDTLEILREK-YRLAI 107
           H     F   +     EE        +I  +  K  +L   P    TL  L+ K YRL +
Sbjct: 61  H-----FNVLTKTVFGEEKPLLIALGMITYHNVKFALLRPFPNTTSTLIDLKSKGYRLGV 115

Query: 108 VTSGPRY-QILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGD 166
           +++G    Q  KL   G+  +FD V+T D+V   KPN +IF  AL R+  +P ++VMVG+
Sbjct: 116 ISNGITIKQWEKLIRLGIHHFFDEVVTSDEVGFEKPNIRIFEEALRRMGCKPERSVMVGN 175

Query: 167 SLEQDVLGAKALGIKTVWINQK---------GDNGYNLPDFEISSISELLEVL 210
              +D+LGA   G+  + +N +           NG ++    I  IS+L E+L
Sbjct: 176 KFNEDILGATNAGMSAILVNSELTEAERDHVEKNGLDVT--VIDDISQLKEIL 226


>pir||H72277 hypothetical protein TM1254 - Thermotoga maritima (strain MSB8)
           >gi|4981809|gb|AAD36329.1|AE001780_13 (AE001780)
           beta-phosphoglucomutase, putative [Thermotoga maritima]
           Length = 216
           
 Score = 71.0 bits (171), Expect = 1e-11
 Identities = 60/194 (30%), Positives = 96/194 (48%), Gaps = 23/194 (11%)

Query: 2   VRAILFDLDETLISERPLVLFILPQVYEILAKR---------LNVSKSEAREIFLGEIER 52
           + A++FD+D  L+   PL      +V E   K          + V + E   I +  +E 
Sbjct: 1   MEAVIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALE- 59

Query: 53  MRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREK-YRLAIVTSG 111
           ++   E      F +R       EE    + E +   PGVR+ LE ++ K  +LA+ TS 
Sbjct: 60  IKDSLE-----NFKKRVH-----EEKKRVFSELLKENPGVREALEFVKSKRIKLALATST 109

Query: 112 PRYQIL-KLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQ 170
           P+ + L +L+   L  YFD ++  D VK  KP+P+I++  LERL V P K V+  DS + 
Sbjct: 110 PQREALERLRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDS-KS 168

Query: 171 DVLGAKALGIKTVW 184
            V  AK+ GI+ ++
Sbjct: 169 GVEAAKSAGIERIY 182


>pir||F75213 hypothetical protein PAB2197 - Pyrococcus abyssi (strain Orsay)
           >gi|5457666|emb|CAB49157.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 233
           
 Score = 69.5 bits (167), Expect = 3e-11
 Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 8/140 (5%)

Query: 79  ILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPR-----YQILKLKVSGLLDYFDAVIT 133
           +L+  E+I V+ G  D L++++EK   A V          Y  + L+  G+LDY D    
Sbjct: 90  VLNVDERI-VIDGAIDALKLVKEKGIKAAVLGNVMFWPGSYTRILLEKFGMLDYIDKTFF 148

Query: 134 RDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGIKTVWINQKGDNGY 193
            D+V + KP  ++F   L    VEP +A+ VGD+  +D  GA  +G+   WIN +     
Sbjct: 149 ADEVLSYKPRREMFEKVLTSFNVEPKEALHVGDTYAEDYQGAIRVGMWAAWINPEAKEVK 208

Query: 194 NLPD--FEISSISELLEVLE 211
            + +  FEIS+++++ +V+E
Sbjct: 209 RIEERGFEISNVAQVGDVIE 228


>pir||C75253 hydrolase, CbbY/CbbZ/GpH/YieH family - Deinococcus radiodurans
           (strain R1) >gi|6460441|gb|AAF12150.1|AE002090_6
           (AE002090) hydrolase, CbbY/CbbZ/GpH/YieH family
           [Deinococcus radiodurans]
           Length = 238
           
 Score = 67.9 bits (163), Expect = 9e-11
 Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 19/190 (10%)

Query: 2   VRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWHD 61
           +RA++FD D T++           ++Y          +   RE+ L + +R  G ++  D
Sbjct: 27  LRAVVFDFDGTILDTETREFHHWQELY----------REHGRELALSDWQRGVGTWDAFD 76

Query: 62  -W-----NYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREK-YRLAIVTSGPRY 114
            W          R ++  +  + I+S      + PGVR  LE ++    RLA+ TS  R 
Sbjct: 77  PWAGLPEQVQADRENVRARLHDTIVSDIAGQDLRPGVRAVLEGVKAAGLRLALATSSDRE 136

Query: 115 QILK-LKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVL 173
            + + ++   LLD F+AV TRDDV+ +KP+P++++ A  RL + P + + V DS      
Sbjct: 137 WVTRWMRQHNLLDLFEAVATRDDVRRVKPDPELYLLAAARLGLRPEECLAVEDSF-NGAT 195

Query: 174 GAKALGIKTV 183
            A A G++ V
Sbjct: 196 AAVAAGMRLV 205


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.409 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77384832
Number of Sequences: 2977
Number of extensions: 3017520
Number of successful extensions: 7448
Number of sequences better than 1.0e-10: 22
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7420
Number of HSP's gapped (non-prelim): 26
length of query: 216
length of database: 189,106,746
effective HSP length: 53
effective length of query: 163
effective length of database: 157,386,935
effective search space: 25654070405
effective search space used: 25654070405
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)