BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1224 (PAB1224) DE:Hypothetical protein
(216 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75022 hypothetical protein PAB1224 - Pyrococcus abyssi (st... 430 e-120
pir||H71208 hypothetical protein PH1936 - Pyrococcus horikoshii ... 319 2e-86
pir||G71045 hypothetical protein PH1655 - Pyrococcus horikoshii ... 101 1e-20
pir||E75169 hypothetical protein PAB2019 - Pyrococcus abyssi (st... 101 1e-20
dbj|BAB05874.1| (AP001514) unknown conserved protein [Bacillus h... 89 4e-17
pir||D82438 conserved hypothetical protein VCA0608 [imported] - ... 83 3e-15
gb|AAG19573.1| (AE005047) Vng1202c [Halobacterium sp. NRC-1] 82 6e-15
pir||B82361 conserved hypothetical protein VC0129 [imported] - V... 81 1e-14
pir||D71157 probable haloacid dehalogenase (EC 3.8.1.-) PH0459 [... 80 2e-14
dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillu... 79 4e-14
pir||B82987 probable hydrolase PA5281 [imported] - Pseudomonas a... 79 5e-14
sp|P33999|YJJG_ECOLI HYPOTHETICAL 25.3 KD PROTEIN IN RIMI-PRFC I... 78 6e-14
pir||G70044 histidine-containing protein P-Ser-HPr phosphatase (... 78 8e-14
pir||B69983 conserved hypothetical protein ysaA - Bacillus subti... 76 2e-13
pir||D72286 conserved hypothetical protein - Thermotoga maritima... 76 2e-13
pir||E75005 probable haloacid dehalogenase (EC 3.8.1.-) PAB1316 ... 76 2e-13
gb|AAF46077.2| (AE003435) CG15771 gene product [Drosophila melan... 76 4e-13
pir||F71249 hypothetical protein PH0253 - Pyrococcus horikoshii ... 75 7e-13
pir||F69125 conserved hypothetical protein MTH209 - Methanobacte... 72 5e-12
pir||H72277 hypothetical protein TM1254 - Thermotoga maritima (s... 71 1e-11
pir||F75213 hypothetical protein PAB2197 - Pyrococcus abyssi (st... 69 3e-11
pir||C75253 hydrolase, CbbY/CbbZ/GpH/YieH family - Deinococcus r... 68 9e-11
>pir||A75022 hypothetical protein PAB1224 - Pyrococcus abyssi (strain Orsay)
>gi|5459129|emb|CAB50615.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 216
Score = 430 bits (1093), Expect = e-120
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH 60
MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH
Sbjct: 1 MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH 60
Query: 61 DWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPRYQILKLK 120
DWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPRYQILKLK
Sbjct: 61 DWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPRYQILKLK 120
Query: 121 VSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGI 180
VSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGI
Sbjct: 121 VSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGI 180
Query: 181 KTVWINQKGDNGYNLPDFEISSISELLEVLEDEGDI 216
KTVWINQKGDNGYNLPDFEISSISELLEVLEDEGDI
Sbjct: 181 KTVWINQKGDNGYNLPDFEISSISELLEVLEDEGDI 216
>pir||H71208 hypothetical protein PH1936 - Pyrococcus horikoshii
>gi|3258380|dbj|BAA31063.1| (AP000007) 217aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 217
Score = 319 bits (808), Expect = 2e-86
Identities = 148/217 (68%), Positives = 185/217 (85%), Gaps = 1/217 (0%)
Query: 1 MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH 60
MV+A+LFD+D TL+SE+PL++FILPQVY+ LA +LN+S+ EAR IFL EIE+ +G+YEWH
Sbjct: 1 MVKAVLFDIDGTLLSEKPLIMFILPQVYDELANKLNISRMEARRIFLSEIEKRKGKYEWH 60
Query: 61 DWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREK-YRLAIVTSGPRYQILKL 119
DWN+FFR FSLPFK+E+ I+ YP KI V PGV + L+ L+E+ YRL IVTSGPRYQ+LKL
Sbjct: 61 DWNFFFRLFSLPFKYEDFIMKYPTKIEVFPGVVEVLKYLKERGYRLGIVTSGPRYQVLKL 120
Query: 120 KVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALG 179
KVSG+ YFD V+TRDDV +IKP P+IF+AALE+LK+ P AVMVGDSLEQD+LGAK +G
Sbjct: 121 KVSGIYRYFDVVVTRDDVGSIKPEPRIFLAALEKLKISPKDAVMVGDSLEQDILGAKGVG 180
Query: 180 IKTVWINQKGDNGYNLPDFEISSISELLEVLEDEGDI 216
+K+VWIN G+NGYNLPDFEISSI +L EV+EDE DI
Sbjct: 181 MKSVWINVGGENGYNLPDFEISSILQLPEVIEDESDI 217
>pir||G71045 hypothetical protein PH1655 - Pyrococcus horikoshii
>gi|3258084|dbj|BAA30767.1| (AP000006) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 101 bits (248), Expect = 1e-20
Identities = 77/228 (33%), Positives = 113/228 (48%), Gaps = 16/228 (7%)
Query: 1 MVRAILFDLDETLISERPLVLFILPQVYEILAKR-LNVSKSEAREIFLGEIERMRGRYEW 59
MV+ I FDLD+TL+ L E + + L V A + I+ + +
Sbjct: 1 MVKVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPY 60
Query: 60 HDWNYFFRRFSLPFKFEEL---ILSYPEK----ITVLPGVRDTLEILREK-YRLAIVTSG 111
H ++Y RR LP+ + + +++Y + +PG R L L+E Y L I+T G
Sbjct: 61 H-FDYLLRRLDLPYNPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITDG 119
Query: 112 -PRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQ 170
P Q K+ L D+F+ VI D KP+PKIF AL+ V+P +A+MVGD L
Sbjct: 120 NPVKQWEKILRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALMVGDRLYS 179
Query: 171 DVLGAKALGIKTVWINQKGDNGYNL-----PDFEISSISELLEVLEDE 213
D+ GAK +G+KTVW + L D+EI ++ LLEVL E
Sbjct: 180 DIYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESLLEVLARE 227
>pir||E75169 hypothetical protein PAB2019 - Pyrococcus abyssi (strain Orsay)
>gi|5457946|emb|CAB49436.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 238
Score = 101 bits (248), Expect = 1e-20
Identities = 76/230 (33%), Positives = 116/230 (50%), Gaps = 20/230 (8%)
Query: 1 MVRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWH 60
M++ I FDLD+TL+ L E + + E L E+ + G H
Sbjct: 1 MIKVIFFDLDDTLVDTTKLAELARRNAIENMIRHGLPVDFETAYSELMELIKEYGSNFPH 60
Query: 61 DWNYFFRRFSLPFKFEEL---ILSYPEK----ITVLPGVRDTLEILREK-YRLAIVTSGP 112
++Y RR LP+ + + +++Y + +PG R L LRE YRL I+T G
Sbjct: 61 HFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDGN 120
Query: 113 RYQ----ILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSL 168
+ IL+L++ D+F+ VI D KP+PKIF AL+ V+ +A+MVGD L
Sbjct: 121 PVKQWEKILRLEID---DFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRL 177
Query: 169 EQDVLGAKALGIKTVWIN----QKGDNGY-NLPDFEISSISELLEVLEDE 213
D+ GAK +G+KTVW K + Y D+EI + +LL+V+E+E
Sbjct: 178 YSDIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENE 227
>dbj|BAB05874.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 267
Score = 88.9 bits (217), Expect = 4e-17
Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 47/258 (18%)
Query: 1 MVRAILFDLDETLISERPLV--LFILPQVYEILAKRLNVSKSE------AREIFLG---- 48
MV+AI+FDLD+TL+ ++ V F+ Y + L+ E ARE++
Sbjct: 1 MVKAIIFDLDDTLLWDKKSVKEAFVATCQYAATKRSLDPEALEESVREVARELYASYETY 60
Query: 49 EIERMRG--------------------------RYEWHDWNYFFRRFSLPFKF--EELIL 80
E +M G Y W + + + EEL
Sbjct: 61 EFTQMIGINPFEGLWGQFLDDNDHFRKMKEIVPTYRKDAWTQGLAKLGIEDQALGEELAE 120
Query: 81 SYPEKITVLPGVRD----TLEILREKYRLAIVTSG-PRYQILKLKVSG-LLDYFDAVITR 134
+PE+ P V + L+ L+ Y+L ++T+G P Q KL ++ L+ YFD ++
Sbjct: 121 RFPEERKKHPFVYEETFRVLDQLKGNYQLLLLTNGSPHLQQTKLDITPELVPYFDHIVIS 180
Query: 135 DDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGIKTVWIN-QKGDNGY 193
KP+P IF AL L + ++A+MVGD+L D+LGA +GIK+VWIN ++ + G
Sbjct: 181 GGFGRGKPDPSIFEHALSLLSLTKDEAIMVGDNLMTDILGASRVGIKSVWINREQKEQGE 240
Query: 194 NLPDFEISSISELLEVLE 211
P +EI + +LL++L+
Sbjct: 241 VEPTYEIEHLEQLLDILK 258
>pir||D82438 conserved hypothetical protein VCA0608 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658020|gb|AAF96509.1|
(AE004391) conserved hypothetical protein [Vibrio
cholerae]
Length = 224
Score = 82.7 bits (201), Expect = 3e-15
Identities = 46/128 (35%), Positives = 76/128 (58%), Gaps = 4/128 (3%)
Query: 87 TVLPGVRDTLEILREKYRLAIVTSG-PRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPK 145
T+LPG + ++ L+ K RL I+T+G Q ++L +G+ D+FD ++ ++V KP+
Sbjct: 95 TLLPGAMELMQALQGKARLGIITNGFTELQDVRLAKTGMTDFFDQIVISEEVGIAKPDAG 154
Query: 146 IFIAALERL-KVEPNKAVMVGDSLEQDVLGAKALGIKTVWIN--QKGDNGYNLPDFEISS 202
IF ALER+ ++ +MVGD+ D+LG GI+T W+N Q P +E++S
Sbjct: 155 IFAHALERMGNPTKSRVLMVGDNPHSDILGGLNFGIETCWLNVHQHPKPDGITPHYEVTS 214
Query: 203 ISELLEVL 210
+ EL E+L
Sbjct: 215 LHELREIL 222
>gb|AAG19573.1| (AE005047) Vng1202c [Halobacterium sp. NRC-1]
Length = 232
Score = 81.9 bits (199), Expect = 6e-15
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 26/230 (11%)
Query: 4 AILFDLDETLISERPLVLFILPQVYEILAKR-LNVSK-------SEAREIFLGEIERMRG 55
A+ DLD TL +P +E R +VS+ S AR E+
Sbjct: 5 AVFVDLDNTLYPYQPCNEAGQQAAWETATDRGYDVSRAAFESLYSRARAAVKREVSETAS 64
Query: 56 RYEWHDWNYFFRRF-----SLPFKFEELILS------YPEKITVLPGVRDTLEILREK-Y 103
HD +F+R P + L L+ Y + +++ GVR+TL+ LR+
Sbjct: 65 A---HDRGLYFKRAIELQAGTPNAADALALADAYWDAYIDALSLFDGVRETLDRLRDAGL 121
Query: 104 RLAIVTS-GPRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAV 162
+A+VT+ R Q+ KL +GL D D V+T +V KP +F L RL V P AV
Sbjct: 122 DVAVVTNLTTRVQLRKLAATGLADRVDCVLTSQEVGREKPASVMFTVPLARLGVAPADAV 181
Query: 163 MVGDSLEQDVLGAKALGIKTVWIN--QKGDNGYNLPDFEISSISELLEVL 210
MVGDS+ DV+GA +G+ +V N + G G PD I S ++ +V+
Sbjct: 182 MVGDSVASDVVGANGVGLTSVLCNNDRTGLTGRESPDHRIESFRDVTDVV 231
>pir||B82361 conserved hypothetical protein VC0129 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654529|gb|AAF93306.1|
(AE004103) conserved hypothetical protein [Vibrio
cholerae]
Length = 239
Score = 80.8 bits (196), Expect = 1e-14
Identities = 65/233 (27%), Positives = 106/233 (44%), Gaps = 28/233 (12%)
Query: 2 VRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRY--EW 59
++A+ FDLD+TL RP++ + +V E L ++ + +L + R+ +
Sbjct: 10 IQALTFDLDDTLYDNRPVIKQVEEKVTEWLLSEHPITATRPLAWWLAMKRDIARRFPEQC 69
Query: 60 HD---WNYFFRRFSL-------------PFKFEELILSYPEKITVLPGVRDTLEILREKY 103
HD W Y + L + E ++ + ++ V L L K
Sbjct: 70 HDVSQWRYLQVQHGLLELGYAQPEAEQAASETLEQVMRWRNQVDVPAETHRVLAQLAAKV 129
Query: 104 RLAIVTSGPRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVM 163
L +T+G QI K+ +SG YF V+ KP P +F A ++L++EP +
Sbjct: 130 PLIAITNG-NVQIEKIGLSG---YFQTVLRAGPDGRAKPYPDLFAQAAQQLQLEPRSILH 185
Query: 164 VGDSLEQDVLGAKALGIKTVWINQKGDN------GYNLPDFEISSISELLEVL 210
VGD L+ DVLGA+ G + W N +G + LPD EI +SELL ++
Sbjct: 186 VGDHLQTDVLGARQNGFQACWFNDQGQSIRRLAKASVLPDVEIERLSELLLIV 238
>pir||D71157 probable haloacid dehalogenase (EC 3.8.1.-) PH0459 [similarity] -
Pyrococcus horikoshii >gi|3256862|dbj|BAA29545.1|
(AP000002) 232aa long hypothetical protein [Pyrococcus
horikoshii]
Length = 232
Score = 80.4 bits (195), Expect = 2e-14
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 30/235 (12%)
Query: 1 MVRAILFDLDETLIS-----------------ERPLVLFILPQVYEILAKRL--NVSKSE 41
M+RA+ FD TL+S + PL L YE L + N +
Sbjct: 1 MIRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKP 60
Query: 42 AREIFLGEIERMRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKITVL-PGVRDTLEILR 100
R I E E MR E + + Y P F E+ L ++ L P V + L+ L+
Sbjct: 61 YRPIRDIEEEVMRKLAEKYGFKY-------PENFWEIHLRMHQRYGELYPEVVEVLKSLK 113
Query: 101 EKYRLAIVT-SGPRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPN 159
KY + ++T S Y + L G+ D FD++ T ++ KP+P+IF AL++ V+
Sbjct: 114 GKYHVGMITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGE 173
Query: 160 KAVMVGDSLEQDVLGAKALGIKTVWINQKGDNG--YNLPDFEISSISELLEVLED 212
+AV VGD+ +D G+K LG+ ++ +++KG+ ++ DF +S + E+++++++
Sbjct: 174 EAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDE 228
>dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillus halodurans]
Length = 215
Score = 79.2 bits (192), Expect = 4e-14
Identities = 62/223 (27%), Positives = 112/223 (49%), Gaps = 29/223 (13%)
Query: 2 VRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWHD 61
+ +LFDLD TLI+ L++ +E + +A E +
Sbjct: 3 INTVLFDLDGTLINTNELIISSFLHTFETYYPG-KYGRKDAIECIGPPLTDS-------- 53
Query: 62 WNYFFRRFSLPFKFEELILSYPEK--------ITVLPGVRDTLEILREK-YRLAIVTSGP 112
F+R P + EE++ +Y + + GV +T++ L E+ ++LAIVT+
Sbjct: 54 ----FKRLD-PERVEEMVATYRKHNHAHHDKLVEPYEGVYETVKTLHEQGFKLAIVTTKI 108
Query: 113 RYQILK-LKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQD 171
R +K LK+ GL ++FD ++ DDV+ +KPNP+ A+ L + + +MVGD+ D
Sbjct: 109 RETAMKGLKLFGLDEFFDVIVALDDVENVKPNPEPLEKAMNALGAKKEETIMVGDN-SHD 167
Query: 172 VLGAKALGIKTVWINQ--KGDNGYNL--PDFEISSISELLEVL 210
+LG K G+KT + +G++ PD+ + S+ +LL+++
Sbjct: 168 ILGGKNAGVKTAVVGYAIRGEDYVRQFDPDYVLRSMPDLLDIV 210
>pir||B82987 probable hydrolase PA5281 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951594|gb|AAG08666.1|AE004940_10
(AE004940) probable hydrolase [Pseudomonas aeruginosa]
Length = 232
Score = 78.8 bits (191), Expect = 5e-14
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 77 ELILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPRYQILKLKVSGLLDYFDAVITRDD 136
++ L ++T+ P V TLEIL +++ L ++T+G ++ GL DYF + ++
Sbjct: 97 QVFLEARHRVTLFPEVHPTLEILADRFTLGVLTNGNA----DVRRLGLADYFRFALCAEE 152
Query: 137 VKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGIKTVWINQKGD--NGYN 194
+ KP+P F AL+R VE + A+ +GD D+ GA+ G++ +W N G G
Sbjct: 153 LGVGKPDPTPFREALKRAGVEASAAIHIGDHPSDDIAGARRAGMRAIWFNPSGKPWAGEE 212
Query: 195 LPDFEISSISELLEVL 210
P EI S++EL +L
Sbjct: 213 EPSAEIRSLAELPALL 228
>sp|P33999|YJJG_ECOLI HYPOTHETICAL 25.3 KD PROTEIN IN RIMI-PRFC INTERGENIC REGION
>gi|1361267|pir||S56598 hypothetical 22.2K protein
(rimI-prfC intergenic region) - Escherichia coli
>gi|537214|gb|AAA97270.1| (U14003) yjjG gene product
[Escherichia coli] >gi|1790833|gb|AAC77327.1| (AE000507)
putative phosphatase [Escherichia coli K12]
Length = 225
Score = 78.4 bits (190), Expect = 6e-14
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 27/225 (12%)
Query: 5 ILFDLDETLIS-------ERPLVLFILP------QVYEILAKRLNVSKSEAREIFLGEIE 51
I FD DETL + +R + + + Q Y+ + K L V + ++
Sbjct: 6 IFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGA---ITSLQ 62
Query: 52 RMRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKI-TVLPGVRDTLEILREKYRLAIVTS 110
GR+E ++ R P K E ++ +I T LPG L +R ++ I+T+
Sbjct: 63 LQHGRFE----SWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITN 118
Query: 111 G-PRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERL-KVEPNKAVMVGDSL 168
G Q ++L+ +GL DYFD ++ ++V KPN KIF ALE+ + ++ +MVGD+
Sbjct: 119 GFSALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTA 178
Query: 169 EQDVLGAKALGIKTVWIN---QKGDNGYNLPDFEISSISELLEVL 210
E D+LG G+ T W+N ++ G P + +SS+ EL ++L
Sbjct: 179 ESDILGGINAGLATCWLNAHHREQPEGI-APTWTVSSLHELEQLL 222
>pir||G70044 histidine-containing protein P-Ser-HPr phosphatase (EC 3.1.3.-)
[validated] - Bacillus subtilis
>gi|2618860|gb|AAC67289.1| (AF017113) HPr(Ser-P)
phosphatase [Bacillus subtilis]
>gi|2636010|emb|CAB15502.1| (Z99121) similar to
phosphoglycolate phosphatase [Bacillus subtilis]
Length = 216
Score = 78.0 bits (189), Expect = 8e-14
Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 41/229 (17%)
Query: 2 VRAILFDLDETLISERPLV----LFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRY 57
V ILFDLD TLI+ L+ L L Y KR +V F+G
Sbjct: 6 VTTILFDLDGTLINTNELIIASFLHTLEHYYPSKYKREDVLA------FIGPS------- 52
Query: 58 EWHDWNYFFRRFSL--PFKFEELILSY--------PEKITVLPGVRDTLEILREK-YRLA 106
F FS P K E++I Y +T V +TL+ L++ + L
Sbjct: 53 -------LFDTFSSMDPDKCEDMIAMYRAYNHDMHDSLVTEYETVYETLDALKKAGFTLG 105
Query: 107 IVTSGPRYQI-LKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVG 165
IVT+ R + + LK++G+ ++F+ V+T DDV KP+P+ + AL++L EP +A+MVG
Sbjct: 106 IVTTKLRDTVNMGLKLTGIGEFFETVVTLDDVTNAKPDPEPVLLALKQLGSEPAEAIMVG 165
Query: 166 DSLEQDVLGAKALGIKTVWI--NQKGDN--GYNLPDFEISSISELLEVL 210
D+ DVL K G KT + KG + PDF + +S+LL+++
Sbjct: 166 DNY-HDVLAGKNAGTKTAGVAWTIKGPEMLAKHEPDFMLEKMSDLLQIV 213
>pir||B69983 conserved hypothetical protein ysaA - Bacillus subtilis
>gi|1770000|emb|CAA99609.1| (Z75208) hypothetical
protein [Bacillus subtilis] >gi|2635359|emb|CAB14854.1|
(Z99118) similar to hypothetical proteins [Bacillus
subtilis]
Length = 260
Score = 76.5 bits (185), Expect = 2e-13
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 96 LEILREKYRLAIVTSG-PRYQILKLK-VSGLLDYFDAVITRDDVKAIKPNPKIFIAALER 153
L+ L+ KY L ++T+G P Q KL V L YF+ ++ KP+ IF L+
Sbjct: 140 LDQLKGKYELLLLTNGDPSLQKEKLAGVPELAPYFNEIVISGAFGKGKPDVSIFEHCLKL 199
Query: 154 LKVEPNKAVMVGDSLEQDVLGAKALGIKTVWINQ--KGDNGYNLPDFEISSISELLEVLE 211
+ +E + A+MVGD+L D+LGA GIKTVWIN+ K + PD+ ISS+ +L +LE
Sbjct: 200 MNIEKDDAIMVGDNLNTDILGASRAGIKTVWINRTDKKNETDVKPDYIISSLHDLFPILE 259
>pir||D72286 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981726|gb|AAD36252.1|AE001774_9 (AE001774)
conserved hypothetical protein [Thermotoga maritima]
Length = 225
Score = 76.5 bits (185), Expect = 2e-13
Identities = 60/230 (26%), Positives = 116/230 (50%), Gaps = 25/230 (10%)
Query: 1 MVRAILFDLDETLIS---------ERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIE 51
M + +LFDLD T++ +R + + +P + + +++ + + G++
Sbjct: 1 MKKGVLFDLDGTILDFEKSEDQALKRTFLKYGIPLTEDQVFLYREINRKWWKLLAEGKVS 60
Query: 52 R---MRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKIT----VLPGVRDTLEILREK-Y 103
+ + R+E F + ++P ++ Y E ++ LPG + LE L++K
Sbjct: 61 KDVVVVARFE-----EFLKTLNIPLDPRKVAKDYLEFLSEEAHFLPGAEEFLERLKKKDL 115
Query: 104 RLAIVTSGPRYQILKLKVSGLLD-YFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAV 162
R+A+VT+G R+ K LD +F+ V+T ++ KP+P+IF ALER+K++ + +
Sbjct: 116 RMAVVTNGVRFVQEKRSRKLKLDRFFEFVLTSEEAGVEKPDPRIFWLALERMKLKKEEVL 175
Query: 163 MVGDSLEQDVLGAKALGIKTVWINQKGDNGYNLPDFEISSISELLEVLED 212
VGD D+ GA+ GI V + GD+ + P + EL +++E+
Sbjct: 176 YVGDDFSSDLEGARNAGIDFVLFSSDGDSSGDFP--VARNFKELEKIVEE 223
>pir||E75005 probable haloacid dehalogenase (EC 3.8.1.-) PAB1316 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458997|emb|CAB50483.1| (AJ248288) 2-HALOALKANOIC
ACID DEHALOGENASE (EC 3.8.1.2 RELATED PROTEIN
[Pyrococcus abyssi]
Length = 229
Score = 76.5 bits (185), Expect = 2e-13
Identities = 66/236 (27%), Positives = 114/236 (47%), Gaps = 30/236 (12%)
Query: 1 MVRAILFDLDETLISERPLVLFILPQVYEILA-------KRLNVSKSEAREIFLG----- 48
M+RA+ FD TL+S + L + E+L K L + RE F
Sbjct: 1 MIRAVFFDFVGTLLSSEGEAVTHLKIMEEVLKGYNLDPRKILEEYEKLTREAFSAYAGKP 60
Query: 49 -------EIERMRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKITVL-PGVRDTLEILR 100
E E MR E + + Y P F E+ L ++ L P V + L+ LR
Sbjct: 61 YRPIRDIEEEIMRKISEEYGFKY-------PENFWEIHLKMHQEYGKLYPEVVEVLKELR 113
Query: 101 EKYRLAIVT-SGPRYQILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPN 159
+ Y + ++T S Y L+ G+ D FD++ T ++ KP+P+IF AL + V+
Sbjct: 114 QSYHVGMITDSDTEYLNAHLEALGVRDLFDSITTSEEAGFFKPHPRIFEIALRKAGVKGE 173
Query: 160 KAVMVGDSLEQDVLGAKALGIKTVWINQKGDNG--YNLPDFEISSISELLEVLEDE 213
AV VGD+ +D GAK LG+ ++ +++ G+ ++ DF +S + E++++++ +
Sbjct: 174 DAVYVGDNPVKDCGGAKNLGMISILLDRTGEKKDLWDRCDFVVSDLREVIKIVKGQ 229
>gb|AAF46077.2| (AE003435) CG15771 gene product [Drosophila melanogaster]
Length = 355
Score = 75.7 bits (183), Expect = 4e-13
Identities = 68/232 (29%), Positives = 107/232 (45%), Gaps = 26/232 (11%)
Query: 2 VRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMR-----GR 56
+RA FDLD TLI R + ++ + L + SK +A + ++ R +
Sbjct: 26 IRAFYFDLDNTLIPTRAGDSKAIRKLADFLETQYQFSKDDATQATQNFLKAFRRCPDNSQ 85
Query: 57 YEWHDWNYFFRRFSLPFKFEELILS-YPE------KITVLPG--VRDTLEILREKYRLAI 107
W R SLP + + L YP+ + +P V+ L + + Y LA+
Sbjct: 86 TSLDSWRTHLWRESLPARHKHLAEQIYPKWLKLRYRYLAVPADYVQLLLRMRQAGYALAL 145
Query: 108 VTSGPRY----QILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVM 163
+T+GP ++ +L V G YFD V+ D+ KP+P+IF AA L V+P + VM
Sbjct: 146 ITNGPSNAQWEKVAELNVRG---YFDCVLVSSDLPWEKPHPEIFYAACNFLNVKPQECVM 202
Query: 164 VGDSLEQDVLGA--KALGIKTVW--INQKGDNGYNLPDFEISSISELLEVLE 211
+GD LE D+ G LG+ T W ++ +L D E +L +LE
Sbjct: 203 IGDKLETDIKGGHLAQLGL-TFWTPLSNSSAAAQSLEDVEYKPHVKLGSLLE 253
>pir||F71249 hypothetical protein PH0253 - Pyrococcus horikoshii
>gi|3256642|dbj|BAA29325.1| (AP000001) 235aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 235
Score = 74.9 bits (181), Expect = 7e-13
Identities = 45/140 (32%), Positives = 81/140 (57%), Gaps = 8/140 (5%)
Query: 79 ILSYPEKITVLPGVRDTLEILREK-YRLAIVTS----GPRYQILKLKVSGLLDYFDAVIT 133
IL+ E + VL G ++ L+ ++E+ + A++ + Y L L+ GL+++ D
Sbjct: 92 ILNVDESL-VLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDKTFF 150
Query: 134 RDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGIKTVWINQKGDNGY 193
D+V + KP ++F L +V+P +++ +GD+ +D GA+ +G+ VWINQ+GD
Sbjct: 151 ADEVLSYKPRKEMFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVR 210
Query: 194 NLPD--FEISSISELLEVLE 211
L + FEI SI+ L +V+E
Sbjct: 211 KLEERGFEIPSIANLKDVIE 230
>pir||F69125 conserved hypothetical protein MTH209 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621255|gb|AAB84715.1| (AE000808) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 226
Score = 72.2 bits (174), Expect = 5e-12
Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 30/233 (12%)
Query: 1 MVRAILFDLDETLISERPLVLFILPQVYEILAKR-LNVSKSEAREIFLGEIERMRGRYEW 59
M++A+ FD+D+TL ++ L +++ EA ++ I Y+
Sbjct: 1 MLKAVFFDIDDTLYDTSGFAKLARKAALNVMIDAGLPLTQEEAYKLLREIISEKGSNYDR 60
Query: 60 HDWNYFFRRFSLPFKFEE--------LILSYPEKITVL---PGVRDTLEILREK-YRLAI 107
H F + EE +I + K +L P TL L+ K YRL +
Sbjct: 61 H-----FNVLTKTVFGEEKPLLIALGMITYHNVKFALLRPFPNTTSTLIDLKSKGYRLGV 115
Query: 108 VTSGPRY-QILKLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGD 166
+++G Q KL G+ +FD V+T D+V KPN +IF AL R+ +P ++VMVG+
Sbjct: 116 ISNGITIKQWEKLIRLGIHHFFDEVVTSDEVGFEKPNIRIFEEALRRMGCKPERSVMVGN 175
Query: 167 SLEQDVLGAKALGIKTVWINQK---------GDNGYNLPDFEISSISELLEVL 210
+D+LGA G+ + +N + NG ++ I IS+L E+L
Sbjct: 176 KFNEDILGATNAGMSAILVNSELTEAERDHVEKNGLDVT--VIDDISQLKEIL 226
>pir||H72277 hypothetical protein TM1254 - Thermotoga maritima (strain MSB8)
>gi|4981809|gb|AAD36329.1|AE001780_13 (AE001780)
beta-phosphoglucomutase, putative [Thermotoga maritima]
Length = 216
Score = 71.0 bits (171), Expect = 1e-11
Identities = 60/194 (30%), Positives = 96/194 (48%), Gaps = 23/194 (11%)
Query: 2 VRAILFDLDETLISERPLVLFILPQVYEILAKR---------LNVSKSEAREIFLGEIER 52
+ A++FD+D L+ PL +V E K + V + E I + +E
Sbjct: 1 MEAVIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALE- 59
Query: 53 MRGRYEWHDWNYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREK-YRLAIVTSG 111
++ E F +R EE + E + PGVR+ LE ++ K +LA+ TS
Sbjct: 60 IKDSLE-----NFKKRVH-----EEKKRVFSELLKENPGVREALEFVKSKRIKLALATST 109
Query: 112 PRYQIL-KLKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQ 170
P+ + L +L+ L YFD ++ D VK KP+P+I++ LERL V P K V+ DS +
Sbjct: 110 PQREALERLRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDS-KS 168
Query: 171 DVLGAKALGIKTVW 184
V AK+ GI+ ++
Sbjct: 169 GVEAAKSAGIERIY 182
>pir||F75213 hypothetical protein PAB2197 - Pyrococcus abyssi (strain Orsay)
>gi|5457666|emb|CAB49157.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 233
Score = 69.5 bits (167), Expect = 3e-11
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 79 ILSYPEKITVLPGVRDTLEILREKYRLAIVTSGPR-----YQILKLKVSGLLDYFDAVIT 133
+L+ E+I V+ G D L++++EK A V Y + L+ G+LDY D
Sbjct: 90 VLNVDERI-VIDGAIDALKLVKEKGIKAAVLGNVMFWPGSYTRILLEKFGMLDYIDKTFF 148
Query: 134 RDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVLGAKALGIKTVWINQKGDNGY 193
D+V + KP ++F L VEP +A+ VGD+ +D GA +G+ WIN +
Sbjct: 149 ADEVLSYKPRREMFEKVLTSFNVEPKEALHVGDTYAEDYQGAIRVGMWAAWINPEAKEVK 208
Query: 194 NLPD--FEISSISELLEVLE 211
+ + FEIS+++++ +V+E
Sbjct: 209 RIEERGFEISNVAQVGDVIE 228
>pir||C75253 hydrolase, CbbY/CbbZ/GpH/YieH family - Deinococcus radiodurans
(strain R1) >gi|6460441|gb|AAF12150.1|AE002090_6
(AE002090) hydrolase, CbbY/CbbZ/GpH/YieH family
[Deinococcus radiodurans]
Length = 238
Score = 67.9 bits (163), Expect = 9e-11
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 19/190 (10%)
Query: 2 VRAILFDLDETLISERPLVLFILPQVYEILAKRLNVSKSEAREIFLGEIERMRGRYEWHD 61
+RA++FD D T++ ++Y + RE+ L + +R G ++ D
Sbjct: 27 LRAVVFDFDGTILDTETREFHHWQELY----------REHGRELALSDWQRGVGTWDAFD 76
Query: 62 -W-----NYFFRRFSLPFKFEELILSYPEKITVLPGVRDTLEILREK-YRLAIVTSGPRY 114
W R ++ + + I+S + PGVR LE ++ RLA+ TS R
Sbjct: 77 PWAGLPEQVQADRENVRARLHDTIVSDIAGQDLRPGVRAVLEGVKAAGLRLALATSSDRE 136
Query: 115 QILK-LKVSGLLDYFDAVITRDDVKAIKPNPKIFIAALERLKVEPNKAVMVGDSLEQDVL 173
+ + ++ LLD F+AV TRDDV+ +KP+P++++ A RL + P + + V DS
Sbjct: 137 WVTRWMRQHNLLDLFEAVATRDDVRRVKPDPELYLLAAARLGLRPEECLAVEDSF-NGAT 195
Query: 174 GAKALGIKTV 183
A A G++ V
Sbjct: 196 AAVAAGMRLV 205
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.143 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77384832
Number of Sequences: 2977
Number of extensions: 3017520
Number of successful extensions: 7448
Number of sequences better than 1.0e-10: 22
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 7420
Number of HSP's gapped (non-prelim): 26
length of query: 216
length of database: 189,106,746
effective HSP length: 53
effective length of query: 163
effective length of database: 157,386,935
effective search space: 25654070405
effective search space used: 25654070405
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)