BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1225 (PAB1225) DE:Hypothetical protein
(268 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75021 hypothetical protein PAB1225 - Pyrococcus abyssi (st... 531 e-150
pir||G71208 hypothetical protein PH1935 - Pyrococcus horikoshii ... 410 e-113
dbj|BAB14102.1| (AK022564) unnamed protein product [Homo sapiens] 101 1e-20
>pir||H75021 hypothetical protein PAB1225 - Pyrococcus abyssi (strain Orsay)
>gi|5459128|emb|CAB50614.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 268
Score = 531 bits (1354), Expect = e-150
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MSMRWKKVIDHLIATDIGNRDSERLYLLYKSKRPDYFSNALNILLNSKNILIISDFPIPP 60
MSMRWKKVIDHLIATDIGNRDSERLYLLYKSKRPDYFSNALNILLNSKNILIISDFPIPP
Sbjct: 1 MSMRWKKVIDHLIATDIGNRDSERLYLLYKSKRPDYFSNALNILLNSKNILIISDFPIPP 60
Query: 61 SMIPETDGPPGALALALALEALGKRATILTQEIVKEGLKDFHSRVVTEFPNVSDFSCLVS 120
SMIPETDGPPGALALALALEALGKRATILTQEIVKEGLKDFHSRVVTEFPNVSDFSCLVS
Sbjct: 61 SMIPETDGPPGALALALALEALGKRATILTQEIVKEGLKDFHSRVVTEFPNVSDFSCLVS 120
Query: 121 IETPGRNREGKYLSFSGLEIRVRPYDELFLKAEKLGIPSIGIGDGGNEIGMGNLEIKDER 180
IETPGRNREGKYLSFSGLEIRVRPYDELFLKAEKLGIPSIGIGDGGNEIGMGNLEIKDER
Sbjct: 121 IETPGRNREGKYLSFSGLEIRVRPYDELFLKAEKLGIPSIGIGDGGNEIGMGNLEIKDER 180
Query: 181 FSIIRADELIIAGVSNWGAYGLVAGLSIEAGENLLKDYNEKEVVENLVEVGLIDGITKRR 240
FSIIRADELIIAGVSNWGAYGLVAGLSIEAGENLLKDYNEKEVVENLVEVGLIDGITKRR
Sbjct: 181 FSIIRADELIIAGVSNWGAYGLVAGLSIEAGENLLKDYNEKEVVENLVEVGLIDGITKRR 240
Query: 241 EMSVDGIPLTLHEKIIELLNEIIILNIP 268
EMSVDGIPLTLHEKIIELLNEIIILNIP
Sbjct: 241 EMSVDGIPLTLHEKIIELLNEIIILNIP 268
>pir||G71208 hypothetical protein PH1935 - Pyrococcus horikoshii
>gi|3258379|dbj|BAA31062.1| (AP000007) 266aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 266
Score = 410 bits (1042), Expect = e-113
Identities = 194/266 (72%), Positives = 236/266 (87%)
Query: 3 MRWKKVIDHLIATDIGNRDSERLYLLYKSKRPDYFSNALNILLNSKNILIISDFPIPPSM 62
MRW+ VIDHLIATDIG R SE+LY+LYKSK PDYFS +L++L+ S +LI+SDFPIPP+M
Sbjct: 1 MRWRIVIDHLIATDIGGRGSEKLYILYKSKDPDYFSKSLDLLIKSDEVLIVSDFPIPPTM 60
Query: 63 IPETDGPPGALALALALEALGKRATILTQEIVKEGLKDFHSRVVTEFPNVSDFSCLVSIE 122
PETDGPPGALALAL L LGK+ATILTQEIVKEGL+DF+ R+ T+FPN+ FSCLVSIE
Sbjct: 61 TPETDGPPGALALALGLAELGKKATILTQEIVKEGLRDFYPRITTKFPNIRKFSCLVSIE 120
Query: 123 TPGRNREGKYLSFSGLEIRVRPYDELFLKAEKLGIPSIGIGDGGNEIGMGNLEIKDERFS 182
TPGRN +G+YLSFSGL+I VRPYD+LFL+A +LGIP+IGIGDGGNEIGMGNL + DERFS
Sbjct: 121 TPGRNFKGEYLSFSGLKISVRPYDDLFLRALELGIPTIGIGDGGNEIGMGNLGLNDERFS 180
Query: 183 IIRADELIIAGVSNWGAYGLVAGLSIEAGENLLKDYNEKEVVENLVEVGLIDGITKRREM 242
++R +ELIIAGVSNWGAYGLVAGLS+ G+NLL+DYNE++VV++LV+VGLIDGITK+RE
Sbjct: 181 VVRVNELIIAGVSNWGAYGLVAGLSMRVGQNLLRDYNEEDVVKSLVDVGLIDGITKKREP 240
Query: 243 SVDGIPLTLHEKIIELLNEIIILNIP 268
+VDG+PL+LH KI+ELL EI+ + P
Sbjct: 241 TVDGLPLSLHGKILELLIEIVNIKTP 266
>dbj|BAB14102.1| (AK022564) unnamed protein product [Homo sapiens]
Length = 616
Score = 101 bits (249), Expect = 1e-20
Identities = 94/320 (29%), Positives = 144/320 (44%), Gaps = 72/320 (22%)
Query: 9 IDHLIATDIGNRDSERLYLLYKSKRPDYFSNALNILLNSKNILIISDFPIPPSMIP--ET 66
++ +I D GNR +LL K D A L +++++LI + FP + P ET
Sbjct: 298 LESMIGIDPGNRGIG--HLLCK----DELLKASLSLSHARSVLITTGFPTHFNHEPPEET 351
Query: 67 DGPPGALALALALEALGKRATILT------------QEIVKEGLKDFHSRVVTEF----- 109
DGPPGA+AL L+AL K I+ ++ V++G+ ++T
Sbjct: 352 DGPPGAVALVAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVE 411
Query: 110 -----------PNVSDFSCLVSIETPGRNREGKYLSFSGLEIR--VRPYDELFLKAEKL- 155
P F LV+IE GR +G Y + + I+ V P D+LFL A+K+
Sbjct: 412 AAQAFLCKNGDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIP 471
Query: 156 GIPSIGIGDGGNEIGMGNLEIKDERF--------SIIRADELIIAGVSNWGAYGLVAGLS 207
GI S G+GDGGNE+GMG ++ R + AD +IAGVSNWG Y L L
Sbjct: 472 GISSTGVGDGGNELGMGKVKEAVRRHIRHGDVIACDVEADFAVIAGVSNWGGYALACALY 531
Query: 208 IEAGENLLKDY------------------------NEKEVVENLVEVGLIDGITKRREMS 243
I + Y E++++ LV+ + G++ M
Sbjct: 532 ILYSCAVHSQYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGME 591
Query: 244 VDGIPL-TLHEKIIELLNEI 262
VDG+P H ++I+ L ++
Sbjct: 592 VDGLPFHNTHAEMIQKLVDV 611
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102647656
Number of Sequences: 2977
Number of extensions: 4441437
Number of successful extensions: 11994
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11990
Number of HSP's gapped (non-prelim): 4
length of query: 268
length of database: 189,106,746
effective HSP length: 55
effective length of query: 213
effective length of database: 156,189,961
effective search space: 33268461693
effective search space used: 33268461693
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)