BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1226 (PAB1226) DE:RIBOSOMAL PROTEIN S18 ALANINE
ACETYLTRANSFERASE related protein
(159 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75021 ribosomal protein s18 alanine acetyltransf erase rel... 341 3e-93
pir||E71208 hypothetical protein PH1933 - Pyrococcus horikoshii ... 290 6e-78
pir||H70428 conserved hypothetical protein aq_1482 - Aquifex aeo... 150 7e-36
sp|Q58604|YC07_METJA HYPOTHETICAL PROTEIN MJ1207 >gi|2128724|pir... 127 6e-29
gi|11498132 protease synthase and sporulation regulator Pai1, pu... 111 6e-24
>pir||F75021 ribosomal protein s18 alanine acetyltransf erase related protein
PAB1226 - Pyrococcus abyssi (strain Orsay)
>gi|5459126|emb|CAB50612.1| (AJ248288) RIBOSOMAL PROTEIN
S18 ALANINE ACETYLTRANSF ERASE related protein
[Pyrococcus abyssi]
Length = 159
Score = 341 bits (865), Expect = 3e-93
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MDDVKIERLKRLNEDVLEDLIEVYMRGYEGLEEYGGEGRDYARDYIKWCWKKAPDGFFVA 60
MDDVKIERLKRLNEDVLEDLIEVYMRGYEGLEEYGGEGRDYARDYIKWCWKKAPDGFFVA
Sbjct: 1 MDDVKIERLKRLNEDVLEDLIEVYMRGYEGLEEYGGEGRDYARDYIKWCWKKAPDGFFVA 60
Query: 61 KVGDRIVGFIVCDRDWYSRYEGKIVGAIHEFVVDKGWQGKGIGKKLLTKCLEFLGKYNDT 120
KVGDRIVGFIVCDRDWYSRYEGKIVGAIHEFVVDKGWQGKGIGKKLLTKCLEFLGKYNDT
Sbjct: 61 KVGDRIVGFIVCDRDWYSRYEGKIVGAIHEFVVDKGWQGKGIGKKLLTKCLEFLGKYNDT 120
Query: 121 IELWVGEKNFGAMRLYEKFGFKKVGKSGIWIRMVRRQSL 159
IELWVGEKNFGAMRLYEKFGFKKVGKSGIWIRMVRRQSL
Sbjct: 121 IELWVGEKNFGAMRLYEKFGFKKVGKSGIWIRMVRRQSL 159
>pir||E71208 hypothetical protein PH1933 - Pyrococcus horikoshii
>gi|3258377|dbj|BAA31060.1| (AP000007) 159aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 159
Score = 290 bits (735), Expect = 6e-78
Identities = 128/159 (80%), Positives = 150/159 (93%)
Query: 1 MDDVKIERLKRLNEDVLEDLIEVYMRGYEGLEEYGGEGRDYARDYIKWCWKKAPDGFFVA 60
MD++KIE+LK+L++ L +LI+VYM GYEGLEEYGGEGRDYAR+YIKWCWKKA DGFFVA
Sbjct: 1 MDEIKIEKLKKLDKKALNELIDVYMSGYEGLEEYGGEGRDYARNYIKWCWKKASDGFFVA 60
Query: 61 KVGDRIVGFIVCDRDWYSRYEGKIVGAIHEFVVDKGWQGKGIGKKLLTKCLEFLGKYNDT 120
KVGD+IVGFIVCD+DW+S+YEG+IVGAIHEFVVDK +QGKGIG+KLL CL+FLGKYNDT
Sbjct: 61 KVGDKIVGFIVCDKDWFSKYEGRIVGAIHEFVVDKKFQGKGIGRKLLITCLDFLGKYNDT 120
Query: 121 IELWVGEKNFGAMRLYEKFGFKKVGKSGIWIRMVRRQSL 159
IELWVGEKN+GAM LYEKFGFKKVGKSGIW+RM++RQ+L
Sbjct: 121 IELWVGEKNYGAMNLYEKFGFKKVGKSGIWVRMIKRQNL 159
>pir||H70428 conserved hypothetical protein aq_1482 - Aquifex aeolicus
>gi|2983873|gb|AAC07426.1| (AE000742) hypothetical
protein [Aquifex aeolicus]
Length = 161
Score = 150 bits (376), Expect = 7e-36
Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 4/155 (2%)
Query: 3 DVKIERLKRLNEDVLEDLIEVYMRGYEGLEEYGGEGRDYARDYIKWCWKKAPDGFFVAKV 62
++KIER K E+ L L+++Y+R Y+GLEEY + Y+KW W + +G F+AKV
Sbjct: 8 NLKIERAK---EEDLPKLVDLYLRAYKGLEEYAYTHPKDVKSYLKWLWNRDKEGIFLAKV 64
Query: 63 GDRIVGFIVCDRDWYSRYEGKIVGAIHEFVVDKGWQGKGIGKKLLTKCLEFLGKYN-DTI 121
+IVGF D +W+SR EGK VGAIHE VVD +QG G+G L+ LE+ K DT
Sbjct: 65 DGKIVGFGAGDANWFSRREGKRVGAIHEIVVDPEYQGHGVGTALMNTILEYFKKKGLDTA 124
Query: 122 ELWVGEKNFGAMRLYEKFGFKKVGKSGIWIRMVRR 156
ELWVG++N+ A+ Y+KFGF++ G+ WIRM+++
Sbjct: 125 ELWVGDENYKAINFYKKFGFQESGRYNYWIRMIKK 159
>sp|Q58604|YC07_METJA HYPOTHETICAL PROTEIN MJ1207 >gi|2128724|pir||F64450 hypothetical
protein MJ1207 - Methanococcus jannaschii
>gi|1591837|gb|AAB99211.1| (U67562) protease synthase
and sporulation negative regulator Pai1, putative
[Methanococcus jannaschii]
Length = 226
Score = 127 bits (317), Expect = 6e-29
Identities = 60/154 (38%), Positives = 94/154 (60%), Gaps = 1/154 (0%)
Query: 4 VKIERLKRLNEDVLEDLIEVYMRGYEGLEEYGGEGRDYARDYIKWCWKKAPDGFFVAKVG 63
+K ++ + +D L+D +E+Y + Y G ++Y + + +AR Y KW K+ DGFFV +V
Sbjct: 72 IKTYTIRNVTKDDLDDFLELYFKAYRGFDKYYYKKKKWARWYFKWLMKRDEDGFFVCEVN 131
Query: 64 DRIVGFIVCDRDWYSRYEGKIVGAIHEFVVDKGWQGKGIGKKLLTKCLEFLGKYNDTI-E 122
+ VGF+ CD +W S E + V IHE VD ++G+GIG L+ K +E+ K I E
Sbjct: 132 GKPVGFVACDCNWISNIEKREVAEIHEIFVDPDFRGRGIGTALINKAIEYAKKRGRRIVE 191
Query: 123 LWVGEKNFGAMRLYEKFGFKKVGKSGIWIRMVRR 156
LWVG +N GA+ Y++ GF++ W+RMV+R
Sbjct: 192 LWVGVENKGAIEFYKRLGFEEKEVVKGWLRMVKR 225
>gi|11498132 protease synthase and sporulation regulator Pai1, putative
[Archaeoglobus fulgidus]
>gi|3334421|sp|O29729|Y521_ARCFU HYPOTHETICAL PROTEIN
AF0521 >gi|7429960|pir||A69315 proteinase synthase /
sporulation regulator Pai1 homolog - Archaeoglobus
fulgidus >gi|2650111|gb|AAB90723.1| (AE001068) protease
synthase and sporulation regulator Pai1, putative
[Archaeoglobus fulgidus]
Length = 147
Score = 111 bits (274), Expect = 6e-24
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 9 LKRLNEDVLEDLIEVYMRGYEGLEEYGGEGRDYARDYIKWCWKKAPDGFFVAKVGDRIVG 68
++R ++D L+D + VY+ Y GLE+Y + ++Y KW + DG VA++ VG
Sbjct: 3 IRRADKDDLDDFVRVYVESYRGLEDYAYTRKRDVKNYFKWLLSRDKDGVMVAEIDGEAVG 62
Query: 69 FIVCDRDWYSRYEGKIVGAIHEFVVDKGWQGKGIGKKLLTKCLEF-LGKYNDTIELWVGE 127
F+ CD +W+S +E K VG IHE V ++G+GIG KL+ K LE+ L + ELWVG
Sbjct: 63 FVACDTNWFSIFERKKVGEIHELFVLPEFRGEGIGAKLMEKALEYALERNRKVAELWVGR 122
Query: 128 KNFGAMRLYEKFGFKKVGKSG 148
N+ A R Y ++ G
Sbjct: 123 TNYRARRFYASQDLRRPESGG 143
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.146 0.470
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66587165
Number of Sequences: 2977
Number of extensions: 2994168
Number of successful extensions: 5772
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5764
Number of HSP's gapped (non-prelim): 5
length of query: 159
length of database: 189,106,746
effective HSP length: 46
effective length of query: 113
effective length of database: 161,576,344
effective search space: 18258126872
effective search space used: 18258126872
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)