BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1227 (PAB1227) DE:transcriptional regulatory protein,
putative
(192 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75021 probable transcription regulatory protein PAB1227 - ... 376 e-103
pir||D71208 hypothetical protein PH1932 - Pyrococcus horikoshii ... 351 3e-96
dbj|BAA25806.1| (AB013082) transcription regulatory protein [Pyr... 323 9e-88
pir||C75021 transcription regulatory protein, arsr family PAB122... 80 2e-14
pir||B71208 hypothetical protein PH1930 - Pyrococcus horikoshii ... 71 8e-12
>pir||E75021 probable transcription regulatory protein PAB1227 - Pyrococcus
abyssi (strain Orsay) >gi|5459125|emb|CAB50611.1|
(AJ248288) transcriptional regulatory protein, putative
[Pyrococcus abyssi]
Length = 192
Score = 376 bits (954), Expect = e-103
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MARKVKVITDPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEA 60
MARKVKVITDPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEA
Sbjct: 1 MARKVKVITDPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEA 60
Query: 61 GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIARSRLKTKIDIFKRLGYKFE 120
GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIARSRLKTKIDIFKRLGYKFE
Sbjct: 61 GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIARSRLKTKIDIFKRLGYKFE 120
Query: 121 EEELLDVMDKMSQKEFDATVRVSKQIEEMEDALKEFSNEDIIHAIEWLSTAELSRDEEYM 180
EEELLDVMDKMSQKEFDATVRVSKQIEEMEDALKEFSNEDIIHAIEWLSTAELSRDEEYM
Sbjct: 121 EEELLDVMDKMSQKEFDATVRVSKQIEEMEDALKEFSNEDIIHAIEWLSTAELSRDEEYM 180
Query: 181 SLLKKLGEILKR 192
SLLKKLGEILKR
Sbjct: 181 SLLKKLGEILKR 192
>pir||D71208 hypothetical protein PH1932 - Pyrococcus horikoshii
>gi|3258376|dbj|BAA31059.1| (AP000007) 192aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 192
Score = 351 bits (891), Expect = 3e-96
Identities = 175/192 (91%), Positives = 186/192 (96%)
Query: 1 MARKVKVITDPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEA 60
MA+KVKVITDPEVIKVMLEDTRR ILKLLRN+EMTISQLSEILGKTPQTIYHHIEKLKEA
Sbjct: 1 MAKKVKVITDPEVIKVMLEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEA 60
Query: 61 GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIARSRLKTKIDIFKRLGYKFE 120
GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIARSRLKTKIDIFKRLGY+FE
Sbjct: 61 GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIARSRLKTKIDIFKRLGYQFE 120
Query: 121 EEELLDVMDKMSQKEFDATVRVSKQIEEMEDALKEFSNEDIIHAIEWLSTAELSRDEEYM 180
E ELL++MD+MSQKEFDATVR+SK IEE EDALK+FSNEDIIHAIEWLSTAEL+RDEEY+
Sbjct: 121 ENELLNIMDRMSQKEFDATVRISKYIEEKEDALKDFSNEDIIHAIEWLSTAELARDEEYL 180
Query: 181 SLLKKLGEILKR 192
LLK+LG ILKR
Sbjct: 181 ELLKRLGSILKR 192
>dbj|BAA25806.1| (AB013082) transcription regulatory protein [Pyrococcus furiosus]
Length = 192
Score = 323 bits (819), Expect = 9e-88
Identities = 157/192 (81%), Positives = 180/192 (92%)
Query: 1 MARKVKVITDPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEA 60
M ++VKVITDPEVIKVMLEDTRR IL+LLRNREMTISQLSEILGK PQTIYHHIEKLKEA
Sbjct: 1 MTKRVKVITDPEVIKVMLEDTRRKILQLLRNREMTISQLSEILGKMPQTIYHHIEKLKEA 60
Query: 61 GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIARSRLKTKIDIFKRLGYKFE 120
GLVEVKRTEMKGNLVEKYYGRTADVFYINLY+GDEELRY+ARSRLKTK+DIFK+LGYKF+
Sbjct: 61 GLVEVKRTEMKGNLVEKYYGRTADVFYINLYMGDEELRYLARSRLKTKLDIFKKLGYKFD 120
Query: 121 EEELLDVMDKMSQKEFDATVRVSKQIEEMEDALKEFSNEDIIHAIEWLSTAELSRDEEYM 180
EEELL+VMD++ +KE + V +SK+IE +ED+LKEFSNEDIIHAIEWL+ A L++DEEY+
Sbjct: 121 EEELLNVMDRILEKEHEVKVEISKEIENVEDSLKEFSNEDIIHAIEWLAMARLAQDEEYI 180
Query: 181 SLLKKLGEILKR 192
L+KKLG+ILKR
Sbjct: 181 ELVKKLGQILKR 192
>pir||C75021 transcription regulatory protein, arsr family PAB1229 - Pyrococcus
abyssi (strain Orsay) >gi|5459123|emb|CAB50609.1|
(AJ248288) TRANSCRIPTIONAL REGULATORY PROTEIN, ARSR
FAMILY [Pyrococcus abyssi]
Length = 184
Score = 79.6 bits (193), Expect = 2e-14
Identities = 60/195 (30%), Positives = 102/195 (51%), Gaps = 18/195 (9%)
Query: 1 MARKVKVITDPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEA 60
M R ++ E +KV+ + TR IL+LLR+ M++S+L+E LGK T+Y HI+ L++A
Sbjct: 1 MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA 60
Query: 61 GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLG--DEELR--YIARSRLKTKIDIFKRLG 116
GLVEV E GN E YGR A +F I + EE R Y+A K +++ +R G
Sbjct: 61 GLVEV--VERIGN--ETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKL-VEVLERAG 115
Query: 117 YKFEEEELL-DVMDKMSQKEFDATVRVSKQIEEMEDALKEFSNEDIIHAIEWLSTAELSR 175
K ++ + D++ K+ + D + ++ ++ F ++H + L+
Sbjct: 116 VKIKDRKRFEDIVKKVFEGIEDESQKILSRLTN-----SSFDEVTLVHLLNLLT---FLH 167
Query: 176 DEEYMSLLKKLGEIL 190
+Y+ K+L E+L
Sbjct: 168 SHKYLKESKELSELL 182
>pir||B71208 hypothetical protein PH1930 - Pyrococcus horikoshii
>gi|3258374|dbj|BAA31057.1| (AP000007) 185aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 185
Score = 71.0 bits (171), Expect = 8e-12
Identities = 43/123 (34%), Positives = 73/123 (58%), Gaps = 9/123 (7%)
Query: 5 VKVITDPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEAGLVE 64
V +++ P+ +K + + TR IL+LLR M++S+++E LG+ T+Y HI+ L++AGLVE
Sbjct: 6 VMIVSQPKQLKALSDPTRIKILELLREHPMSVSEIAERLGRDKSTVYRHIKALEDAGLVE 65
Query: 65 VKRTEMKGNLVEKYYGRTADVFYI----NLYLGDEELRYIARSRLKTKIDIFKRLGYKFE 120
V E GN E YGR A VF + N + D Y++R ++ I++ + G +
Sbjct: 66 V--VEKIGN--EVVYGRVAYVFLLVPNSNKEIEDLRRAYLSR-EVEKLIEVLEDSGIRIR 120
Query: 121 EEE 123
++E
Sbjct: 121 DKE 123
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.360
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62631073
Number of Sequences: 2977
Number of extensions: 2420028
Number of successful extensions: 12062
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12059
Number of HSP's gapped (non-prelim): 5
length of query: 192
length of database: 189,106,746
effective HSP length: 60
effective length of query: 132
effective length of database: 153,197,526
effective search space: 20222073432
effective search space used: 20222073432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)