BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1228 (PAB1228) DE:Hypothetical protein
(100 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75021 hypothetical protein PAB1228 - Pyrococcus abyssi (st... 196 5e-50
pir||C71208 hypothetical protein PH1931 - Pyrococcus horikoshii ... 190 2e-48
dbj|BAA25807.1| (AB013082) MJ0319-like hypothetical protein [Pyr... 187 2e-47
pir||G69218 conserved hypothetical protein MTH889 - Methanobacte... 130 4e-30
sp|Q57767|Y319_METJA HYPOTHETICAL PROTEIN MJ0319 >gi|2128236|pir... 127 2e-29
gi|11499144 conserved hypothetical protein [Archaeoglobus fulgid... 120 4e-27
emb|CAC12308.1| (AL445066) conserved hypothetical protein [Therm... 85 2e-16
pir||G72656 hypothetical protein APES031 - Aeropyrum pernix (str... 79 1e-14
gb|AAK40899.1| Conserved hypothetical protein [Sulfolobus solfat... 79 1e-14
>pir||D75021 hypothetical protein PAB1228 - Pyrococcus abyssi (strain Orsay)
>gi|5459124|emb|CAB50610.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 100
Score = 196 bits (493), Expect = 5e-50
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MAKGIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLN 60
MAKGIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLN
Sbjct: 1 MAKGIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLN 60
Query: 61 YEEIVRTIEEFGGVVHSIDMVAAGKKIVEEEETPQDKLEE 100
YEEIVRTIEEFGGVVHSIDMVAAGKKIVEEEETPQDKLEE
Sbjct: 61 YEEIVRTIEEFGGVVHSIDMVAAGKKIVEEEETPQDKLEE 100
>pir||C71208 hypothetical protein PH1931 - Pyrococcus horikoshii
>gi|3258375|dbj|BAA31058.1| (AP000007) 101aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 101
Score = 190 bits (479), Expect = 2e-48
Identities = 95/100 (95%), Positives = 100/100 (100%)
Query: 1 MAKGIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLN 60
MA+GIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTI+GDNLN
Sbjct: 2 MARGIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIVGDNLN 61
Query: 61 YEEIVRTIEEFGGVVHSIDMVAAGKKIVEEEETPQDKLEE 100
Y+EIVRTIEEFGGVVHSIDMVAAG+KI+EEEETPQDKLEE
Sbjct: 62 YDEIVRTIEEFGGVVHSIDMVAAGRKIIEEEETPQDKLEE 101
>dbj|BAA25807.1| (AB013082) MJ0319-like hypothetical protein [Pyrococcus furiosus]
Length = 101
Score = 187 bits (470), Expect = 2e-47
Identities = 93/100 (93%), Positives = 98/100 (98%)
Query: 1 MAKGIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLN 60
M KGIRLLVLDVLKPHQPLVTELALGLSELEGV+GVNITLVEIDKETEN+KVTI+GDNLN
Sbjct: 1 MGKGIRLLVLDVLKPHQPLVTELALGLSELEGVDGVNITLVEIDKETENVKVTIVGDNLN 60
Query: 61 YEEIVRTIEEFGGVVHSIDMVAAGKKIVEEEETPQDKLEE 100
YEEIVRTIEEFGGVVHSIDMVAAGK+I+EE ETPQDKLEE
Sbjct: 61 YEEIVRTIEEFGGVVHSIDMVAAGKRIIEEGETPQDKLEE 100
>pir||G69218 conserved hypothetical protein MTH889 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621983|gb|AAB85387.1| (AE000864) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 97
Score = 130 bits (323), Expect = 4e-30
Identities = 61/96 (63%), Positives = 79/96 (81%)
Query: 1 MAKGIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLN 60
+AKG+ +VLD+LKPH+P++ E A LSEL GVEGVNITL+EIDKETENIKVTI G++L+
Sbjct: 2 VAKGLIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLD 61
Query: 61 YEEIVRTIEEFGGVVHSIDMVAAGKKIVEEEETPQD 96
++EI R IE +GG +HS+D V AG+ +VEE TPQD
Sbjct: 62 FDEITRAIESYGGSIHSVDEVVAGRTMVEEVTTPQD 97
>sp|Q57767|Y319_METJA HYPOTHETICAL PROTEIN MJ0319 >gi|2128236|pir||H64339 hypothetical
protein MJ0319 - Methanococcus jannaschii
>gi|1591039|gb|AAB98304.1| (U67486) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 97
Score = 127 bits (317), Expect = 2e-29
Identities = 58/94 (61%), Positives = 76/94 (80%)
Query: 4 GIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLNYEE 63
GIR +VLD+LKPH+P +T++AL L+ L ++GVNIT+ EIDKETEN+KVTI G+NL+++E
Sbjct: 3 GIRRIVLDILKPHEPKITDMALKLTSLSNIDGVNITVYEIDKETENVKVTIEGNNLDFDE 62
Query: 64 IVRTIEEFGGVVHSIDMVAAGKKIVEEEETPQDK 97
I IE GG +HSID V AGKKI+EE TPQD+
Sbjct: 63 IQEIIESLGGTIHSIDEVVAGKKIIEEVRTPQDR 96
>gi|11499144 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483139|pir||D69443 conserved hypothetical protein
AF1549 - Archaeoglobus fulgidus
>gi|2649011|gb|AAB89697.1| (AE000995) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 95
Score = 120 bits (298), Expect = 4e-27
Identities = 60/94 (63%), Positives = 73/94 (76%)
Query: 3 KGIRLLVLDVLKPHQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLNYE 62
KG+R LVLDVLKPH+P AL LSELE V+GVNI L EID+ TENIK+TI+G+NL+YE
Sbjct: 2 KGLRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYE 61
Query: 63 EIVRTIEEFGGVVHSIDMVAAGKKIVEEEETPQD 96
+I IE+ GGV+HS+D V AGK IVE +T QD
Sbjct: 62 QIKGVIEDLGGVIHSVDEVVAGKIIVESVKTEQD 95
>emb|CAC12308.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 99
Score = 84.7 bits (206), Expect = 2e-16
Identities = 40/97 (41%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 1 MAKGIRLLVLDVLKP-HQPLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNL 59
M IR +VLDV K ++P + ELA + +++GVE VNI + E+D ET +T+ G N+
Sbjct: 3 MDLNIRRVVLDVDKGLNRPTLVELAAAIEKVQGVEAVNIIVTEMDMETMGTNITVEGTNI 62
Query: 60 NYEEIVRTIEEFGGVVHSIDMVAAGKKIVEEEETPQD 96
NY+E++ TIE G +HS+D +A GK+++E Q+
Sbjct: 63 NYDELIETIENTGSAIHSVDEIAVGKRLIENVRRNQN 99
>pir||G72656 hypothetical protein APES031 - Aeropyrum pernix (strain K1)
>gi|5104340|dbj|BAA79655.1| (AP000060) 87aa long
hypothetical protein [Aeropyrum pernix]
Length = 87
Score = 79.2 bits (192), Expect = 1e-14
Identities = 39/85 (45%), Positives = 59/85 (68%), Gaps = 1/85 (1%)
Query: 12 VLKPHQ-PLVTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLNYEEIVRTIEE 70
+LKP + P + +++ ++ L G+EGVNIT+ EID ET + +TI G +++Y + + +EE
Sbjct: 1 MLKPIRGPSIIDVSREVAALPGIEGVNITVKEIDVETVTLTMTIEGSDIDYGSVEKKLEE 60
Query: 71 FGGVVHSIDMVAAGKKIVEEEETPQ 95
G +VHSID AGKKIVE+EE Q
Sbjct: 61 LGCIVHSIDQAVAGKKIVEQEEVEQ 85
>gb|AAK40899.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 95
Score = 78.8 bits (191), Expect = 1e-14
Identities = 40/86 (46%), Positives = 62/86 (71%), Gaps = 1/86 (1%)
Query: 5 IRLLVLDVLKPHQPL-VTELALGLSELEGVEGVNITLVEIDKETENIKVTIMGDNLNYEE 63
IR LVLDVLKP + + +LA +S+L+GVEGVNI++ ++D ET + + I G +LN+++
Sbjct: 3 IRRLVLDVLKPIRGTSIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDD 62
Query: 64 IVRTIEEFGGVVHSIDMVAAGKKIVE 89
I + +EE G +HSID V +G +I+E
Sbjct: 63 IRKMLEEEGCAIHSIDEVVSGNRIIE 88
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.312 0.137 0.357
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34727180
Number of Sequences: 2977
Number of extensions: 1255750
Number of successful extensions: 3109
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3099
Number of HSP's gapped (non-prelim): 9
length of query: 100
length of database: 189,106,746
effective HSP length: 57
effective length of query: 43
effective length of database: 154,992,987
effective search space: 6664698441
effective search space used: 6664698441
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 158 (66.0 bits)