BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1229 (PAB1229) DE:TRANSCRIPTIONAL REGULATORY PROTEIN, ARSR
FAMILY
(184 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75021 transcription regulatory protein, arsr family PAB122... 354 3e-97
pir||B71208 hypothetical protein PH1930 - Pyrococcus horikoshii ... 259 1e-68
pir||E75021 probable transcription regulatory protein PAB1227 - ... 80 2e-14
dbj|BAA25806.1| (AB013082) transcription regulatory protein [Pyr... 80 2e-14
pir||D71208 hypothetical protein PH1932 - Pyrococcus horikoshii ... 75 4e-13
>pir||C75021 transcription regulatory protein, arsr family PAB1229 - Pyrococcus
abyssi (strain Orsay) >gi|5459123|emb|CAB50609.1|
(AJ248288) TRANSCRIPTIONAL REGULATORY PROTEIN, ARSR
FAMILY [Pyrococcus abyssi]
Length = 184
Score = 354 bits (900), Expect = 3e-97
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA 60
MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA
Sbjct: 1 MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA 60
Query: 61 GLVEVVERIGNETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKLVEVLERAGVKIKD 120
GLVEVVERIGNETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKLVEVLERAGVKIKD
Sbjct: 61 GLVEVVERIGNETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKLVEVLERAGVKIKD 120
Query: 121 RKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLTFLHSHKYLKESKELSE 180
RKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLTFLHSHKYLKESKELSE
Sbjct: 121 RKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLTFLHSHKYLKESKELSE 180
Query: 181 LLDI 184
LLDI
Sbjct: 181 LLDI 184
>pir||B71208 hypothetical protein PH1930 - Pyrococcus horikoshii
>gi|3258374|dbj|BAA31057.1| (AP000007) 185aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 185
Score = 259 bits (655), Expect = 1e-68
Identities = 126/185 (68%), Positives = 160/185 (86%), Gaps = 1/185 (0%)
Query: 1 MCRVPVMVVSKEK-LKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEK 59
MCR+PVM+VS+ K LK LSD TR+KILELLR+HPMSVSE+AERLG+DKSTVYRHIKALE
Sbjct: 1 MCRIPVMIVSQPKQLKALSDPTRIKILELLREHPMSVSEIAERLGRDKSTVYRHIKALED 60
Query: 60 AGLVEVVERIGNETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKLVEVLERAGVKIK 119
AGLVEVVE+IGNE +YGRVAY+FL+ S+KE E+ R AYL+ + KL+EVLE +G++I+
Sbjct: 61 AGLVEVVEKIGNEVVYGRVAYVFLLVPNSNKEIEDLRRAYLSREVEKLIEVLEDSGIRIR 120
Query: 120 DRKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLTFLHSHKYLKESKELS 179
D+++F IV+KVF IE++SQ ILSRL NSSFDE+ L+H+LN LTFL+SHKY++ESK+L
Sbjct: 121 DKEKFRSIVQKVFRDIENQSQHILSRLMNSSFDEIALIHILNFLTFLYSHKYVEESKQLF 180
Query: 180 ELLDI 184
+LLDI
Sbjct: 181 KLLDI 185
>pir||E75021 probable transcription regulatory protein PAB1227 - Pyrococcus
abyssi (strain Orsay) >gi|5459125|emb|CAB50611.1|
(AJ248288) transcriptional regulatory protein, putative
[Pyrococcus abyssi]
Length = 192
Score = 79.6 bits (193), Expect = 2e-14
Identities = 60/195 (30%), Positives = 102/195 (51%), Gaps = 18/195 (9%)
Query: 1 MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA 60
M R ++ E +KV+ + TR IL+LLR+ M++S+L+E LGK T+Y HI+ L++A
Sbjct: 1 MARKVKVITDPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEA 60
Query: 61 GLVEV--VERIGN--ETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKL-VEVLERAG 115
GLVEV E GN E YGR A +F I + EE R Y+A K +++ +R G
Sbjct: 61 GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLG--DEELR--YIARSRLKTKIDIFKRLG 116
Query: 116 VKIKDRKRFEDIVKKVFEGIEDESQKILSRLTN-----SSFDEVTLVHLLNLLT---FLH 167
K ++ + D++ K+ + D + ++ ++ F ++H + L+
Sbjct: 117 YKFEEEELL-DVMDKMSQKEFDATVRVSKQIEEMEDALKEFSNEDIIHAIEWLSTAELSR 175
Query: 168 SHKYLKESKELSELL 182
+Y+ K+L E+L
Sbjct: 176 DEEYMSLLKKLGEIL 190
>dbj|BAA25806.1| (AB013082) transcription regulatory protein [Pyrococcus furiosus]
Length = 192
Score = 79.6 bits (193), Expect = 2e-14
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 7 MVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKAGLVEV- 65
++ E +KV+ + TR KIL+LLR+ M++S+L+E LGK T+Y HI+ L++AGLVEV
Sbjct: 7 VITDPEVIKVMLEDTRRKILQLLRNREMTISQLSEILGKMPQTIYHHIEKLKEAGLVEVK 66
Query: 66 -VERIGN--ETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKL-VEVLERAGVKIKDR 121
E GN E YGR A +F I + EE R YLA K +++ ++ G K D
Sbjct: 67 RTEMKGNLVEKYYGRTADVFYINLYMG--DEELR--YLARSRLKTKLDIFKKLGYKF-DE 121
Query: 122 KRFEDIVKKVFEGIEDESQKILSRLTN--------SSFDEVTLVHLLNLLTFLHSHKYLK 173
+ +++ ++ E + +I + N S+ D + + L + +Y++
Sbjct: 122 EELLNVMDRILEKEHEVKVEISKEIENVEDSLKEFSNEDIIHAIEWLAMARLAQDEEYIE 181
Query: 174 ESKELSELL 182
K+L ++L
Sbjct: 182 LVKKLGQIL 190
>pir||D71208 hypothetical protein PH1932 - Pyrococcus horikoshii
>gi|3258376|dbj|BAA31059.1| (AP000007) 192aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 192
Score = 75.3 bits (182), Expect = 4e-13
Identities = 63/198 (31%), Positives = 101/198 (50%), Gaps = 24/198 (12%)
Query: 1 MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA 60
M + ++ E +KV+ + TR KIL+LLR+ M++S+L+E LGK T+Y HI+ L++A
Sbjct: 1 MAKKVKVITDPEVIKVMLEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEA 60
Query: 61 GLVEV--VERIGN--ETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKL-VEVLERAG 115
GLVEV E GN E YGR A +F I + EE R Y+A K +++ +R G
Sbjct: 61 GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLG--DEELR--YIARSRLKTKIDIFKRLG 116
Query: 116 VKIKD-----------RKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLT 164
+ ++ +K F D ++ + IE E + L +N D + + L+
Sbjct: 117 YQFEENELLNIMDRMSQKEF-DATVRISKYIE-EKEDALKDFSNE--DIIHAIEWLSTAE 172
Query: 165 FLHSHKYLKESKELSELL 182
+YL+ K L +L
Sbjct: 173 LARDEEYLELLKRLGSIL 190
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.359
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55966089
Number of Sequences: 2977
Number of extensions: 2057528
Number of successful extensions: 10009
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10006
Number of HSP's gapped (non-prelim): 5
length of query: 184
length of database: 189,106,746
effective HSP length: 60
effective length of query: 124
effective length of database: 153,197,526
effective search space: 18996493224
effective search space used: 18996493224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)