BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1229 (PAB1229) DE:TRANSCRIPTIONAL REGULATORY PROTEIN, ARSR
FAMILY
         (184 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75021 transcription regulatory protein, arsr family PAB122...   354  3e-97
pir||B71208 hypothetical protein PH1930 - Pyrococcus horikoshii ...   259  1e-68
pir||E75021 probable transcription regulatory protein PAB1227 - ...    80  2e-14
dbj|BAA25806.1| (AB013082) transcription regulatory protein [Pyr...    80  2e-14
pir||D71208 hypothetical protein PH1932 - Pyrococcus horikoshii ...    75  4e-13

>pir||C75021 transcription regulatory protein, arsr family PAB1229 - Pyrococcus
           abyssi (strain Orsay) >gi|5459123|emb|CAB50609.1|
           (AJ248288) TRANSCRIPTIONAL REGULATORY PROTEIN, ARSR
           FAMILY [Pyrococcus abyssi]
           Length = 184
           
 Score =  354 bits (900), Expect = 3e-97
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA 60
           MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA
Sbjct: 1   MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA 60

Query: 61  GLVEVVERIGNETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKLVEVLERAGVKIKD 120
           GLVEVVERIGNETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKLVEVLERAGVKIKD
Sbjct: 61  GLVEVVERIGNETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKLVEVLERAGVKIKD 120

Query: 121 RKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLTFLHSHKYLKESKELSE 180
           RKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLTFLHSHKYLKESKELSE
Sbjct: 121 RKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLTFLHSHKYLKESKELSE 180

Query: 181 LLDI 184
           LLDI
Sbjct: 181 LLDI 184


>pir||B71208 hypothetical protein PH1930 - Pyrococcus horikoshii
           >gi|3258374|dbj|BAA31057.1| (AP000007) 185aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 185
           
 Score =  259 bits (655), Expect = 1e-68
 Identities = 126/185 (68%), Positives = 160/185 (86%), Gaps = 1/185 (0%)

Query: 1   MCRVPVMVVSKEK-LKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEK 59
           MCR+PVM+VS+ K LK LSD TR+KILELLR+HPMSVSE+AERLG+DKSTVYRHIKALE 
Sbjct: 1   MCRIPVMIVSQPKQLKALSDPTRIKILELLREHPMSVSEIAERLGRDKSTVYRHIKALED 60

Query: 60  AGLVEVVERIGNETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKLVEVLERAGVKIK 119
           AGLVEVVE+IGNE +YGRVAY+FL+   S+KE E+ R AYL+  + KL+EVLE +G++I+
Sbjct: 61  AGLVEVVEKIGNEVVYGRVAYVFLLVPNSNKEIEDLRRAYLSREVEKLIEVLEDSGIRIR 120

Query: 120 DRKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLTFLHSHKYLKESKELS 179
           D+++F  IV+KVF  IE++SQ ILSRL NSSFDE+ L+H+LN LTFL+SHKY++ESK+L 
Sbjct: 121 DKEKFRSIVQKVFRDIENQSQHILSRLMNSSFDEIALIHILNFLTFLYSHKYVEESKQLF 180

Query: 180 ELLDI 184
           +LLDI
Sbjct: 181 KLLDI 185


>pir||E75021 probable transcription regulatory protein PAB1227 - Pyrococcus
           abyssi (strain Orsay) >gi|5459125|emb|CAB50611.1|
           (AJ248288) transcriptional regulatory protein, putative
           [Pyrococcus abyssi]
           Length = 192
           
 Score = 79.6 bits (193), Expect = 2e-14
 Identities = 60/195 (30%), Positives = 102/195 (51%), Gaps = 18/195 (9%)

Query: 1   MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA 60
           M R   ++   E +KV+ + TR  IL+LLR+  M++S+L+E LGK   T+Y HI+ L++A
Sbjct: 1   MARKVKVITDPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEA 60

Query: 61  GLVEV--VERIGN--ETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKL-VEVLERAG 115
           GLVEV   E  GN  E  YGR A +F I +      EE R  Y+A    K  +++ +R G
Sbjct: 61  GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLG--DEELR--YIARSRLKTKIDIFKRLG 116

Query: 116 VKIKDRKRFEDIVKKVFEGIEDESQKILSRLTN-----SSFDEVTLVHLLNLLT---FLH 167
            K ++ +   D++ K+ +   D + ++  ++         F    ++H +  L+      
Sbjct: 117 YKFEEEELL-DVMDKMSQKEFDATVRVSKQIEEMEDALKEFSNEDIIHAIEWLSTAELSR 175

Query: 168 SHKYLKESKELSELL 182
             +Y+   K+L E+L
Sbjct: 176 DEEYMSLLKKLGEIL 190


>dbj|BAA25806.1| (AB013082) transcription regulatory protein [Pyrococcus furiosus]
           Length = 192
           
 Score = 79.6 bits (193), Expect = 2e-14
 Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 18/189 (9%)

Query: 7   MVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKAGLVEV- 65
           ++   E +KV+ + TR KIL+LLR+  M++S+L+E LGK   T+Y HI+ L++AGLVEV 
Sbjct: 7   VITDPEVIKVMLEDTRRKILQLLRNREMTISQLSEILGKMPQTIYHHIEKLKEAGLVEVK 66

Query: 66  -VERIGN--ETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKL-VEVLERAGVKIKDR 121
             E  GN  E  YGR A +F I +      EE R  YLA    K  +++ ++ G K  D 
Sbjct: 67  RTEMKGNLVEKYYGRTADVFYINLYMG--DEELR--YLARSRLKTKLDIFKKLGYKF-DE 121

Query: 122 KRFEDIVKKVFEGIEDESQKILSRLTN--------SSFDEVTLVHLLNLLTFLHSHKYLK 173
           +   +++ ++ E   +   +I   + N        S+ D +  +  L +       +Y++
Sbjct: 122 EELLNVMDRILEKEHEVKVEISKEIENVEDSLKEFSNEDIIHAIEWLAMARLAQDEEYIE 181

Query: 174 ESKELSELL 182
             K+L ++L
Sbjct: 182 LVKKLGQIL 190


>pir||D71208 hypothetical protein PH1932 - Pyrococcus horikoshii
           >gi|3258376|dbj|BAA31059.1| (AP000007) 192aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 192
           
 Score = 75.3 bits (182), Expect = 4e-13
 Identities = 63/198 (31%), Positives = 101/198 (50%), Gaps = 24/198 (12%)

Query: 1   MCRVPVMVVSKEKLKVLSDRTRMKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKA 60
           M +   ++   E +KV+ + TR KIL+LLR+  M++S+L+E LGK   T+Y HI+ L++A
Sbjct: 1   MAKKVKVITDPEVIKVMLEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEA 60

Query: 61  GLVEV--VERIGN--ETLYGRVAYIFLIAVGSDKESEEFREAYLAEGIAKL-VEVLERAG 115
           GLVEV   E  GN  E  YGR A +F I +      EE R  Y+A    K  +++ +R G
Sbjct: 61  GLVEVKRTEMKGNLVEKYYGRTADVFYINLYLG--DEELR--YIARSRLKTKIDIFKRLG 116

Query: 116 VKIKD-----------RKRFEDIVKKVFEGIEDESQKILSRLTNSSFDEVTLVHLLNLLT 164
            + ++           +K F D   ++ + IE E +  L   +N   D +  +  L+   
Sbjct: 117 YQFEENELLNIMDRMSQKEF-DATVRISKYIE-EKEDALKDFSNE--DIIHAIEWLSTAE 172

Query: 165 FLHSHKYLKESKELSELL 182
                +YL+  K L  +L
Sbjct: 173 LARDEEYLELLKRLGSIL 190


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.137    0.359 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55966089
Number of Sequences: 2977
Number of extensions: 2057528
Number of successful extensions: 10009
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10006
Number of HSP's gapped (non-prelim): 5
length of query: 184
length of database: 189,106,746
effective HSP length: 60
effective length of query: 124
effective length of database: 153,197,526
effective search space: 18996493224
effective search space used: 18996493224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)