BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1230 (PAB1230) DE:SUCCINYL-COA SYNTHETASE ALPHA SUBUNIT
RELATED PROTEIN
(466 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75021 succinyl-coa synthetase alpha chain related protein ... 929 0.0
pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii ... 860 0.0
pir||E75149 succinyl-coa synthetase alpha chain related protein ... 431 e-120
pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii ... 429 e-119
pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alph... 407 e-112
pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (st... 404 e-111
pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii ... 399 e-110
pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii ... 384 e-105
pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (st... 382 e-105
gi|11498810 conserved hypothetical protein [Archaeoglobus fulgid... 374 e-103
pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (st... 369 e-101
pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii ... 364 1e-99
sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir... 347 1e-94
gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giard... 316 4e-85
gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfat... 316 5e-85
emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Therm... 310 3e-83
pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomy... 302 6e-81
gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entam... 302 6e-81
gi|11499522 conserved hypothetical protein [Archaeoglobus fulgid... 299 4e-80
gi|11499106 conserved hypothetical protein [Archaeoglobus fulgid... 296 4e-79
gi|11498792 conserved hypothetical protein [Archaeoglobus fulgid... 293 3e-78
gi|11498537 conserved hypothetical protein [Archaeoglobus fulgid... 252 6e-66
pir||C82443 conserved hypothetical protein VCA0574 [imported] - ... 248 1e-64
dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in U... 218 1e-55
sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA IN... 218 1e-55
gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacte... 213 3e-54
pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelic... 199 5e-50
emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas ... 199 7e-50
pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomo... 194 1e-48
pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas... 143 4e-33
pir||A72707 probable succinyl-CoA synthetase alpha chain APE1072... 74 4e-12
>pir||A75021 succinyl-coa synthetase alpha chain related protein PAB1230 -
Pyrococcus abyssi (strain Orsay)
>gi|5459121|emb|CAB50607.1| (AJ248288) SUCCINYL-COA
SYNTHETASE ALPHA SUBUNIT RELATED PROTEIN [Pyrococcus
abyssi]
Length = 466
Score = 929 bits (2376), Expect = 0.0
Identities = 466/466 (100%), Positives = 466/466 (100%)
Query: 1 MTRPELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKF 60
MTRPELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKF
Sbjct: 1 MTRPELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKF 60
Query: 61 KVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELV 120
KVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELV
Sbjct: 61 KVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELV 120
Query: 121 KRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWA 180
KRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWA
Sbjct: 121 KRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWA 180
Query: 181 ARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKV 240
ARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKV
Sbjct: 181 ARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKV 240
Query: 241 KPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQ 300
KPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQ
Sbjct: 241 KPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQ 300
Query: 301 NPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRN 360
NPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRN
Sbjct: 301 NPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRN 360
Query: 361 PVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEGIVDVMGRVKEYGKPIVF 420
PVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEGIVDVMGRVKEYGKPIVF
Sbjct: 361 PVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEGIVDVMGRVKEYGKPIVF 420
Query: 421 VAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKYLSEL 466
VAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKYLSEL
Sbjct: 421 VAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKYLSEL 466
>pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii
>gi|3258372|dbj|BAA31055.1| (AP000007) 466aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 466
Score = 860 bits (2197), Expect = 0.0
Identities = 422/466 (90%), Positives = 445/466 (94%)
Query: 1 MTRPELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKF 60
M LDFLFYP SVAVIGASHVPGKVGN ILRSLVN F GKIYAVNVKGGEIEVNGKKF
Sbjct: 1 MNEVNLDFLFYPESVAVIGASHVPGKVGNGILRSLVNNFRGKIYAVNVKGGEIEVNGKKF 60
Query: 61 KVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELV 120
KVY+S+K++PD+VDVAVIAVPAKFVP+VIDECGEKGVKGVVVISAGFKEAGRADLEEELV
Sbjct: 61 KVYKSIKDVPDKVDVAVIAVPAKFVPEVIDECGEKGVKGVVVISAGFKEAGRADLEEELV 120
Query: 121 KRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWA 180
KRA+KWGIRVVGPNCLGVTN+ENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWA
Sbjct: 121 KRAKKWGIRVVGPNCLGVTNLENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWA 180
Query: 181 ARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKV 240
ARHEVGMSKFISLGNMADLDESDFMLYLK+DPKTKVITAYIEGVKDG+KFFN AKETTKV
Sbjct: 181 ARHEVGMSKFISLGNMADLDESDFMLYLKNDPKTKVITAYIEGVKDGKKFFNVAKETTKV 240
Query: 241 KPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQ 300
KPVI+LKAGRTEAGAKAAASHTGSLAGSY+IYEA F+Q+G+L AKSMRQLFNYAKALAMQ
Sbjct: 241 KPVIVLKAGRTEAGAKAAASHTGSLAGSYRIYEAVFEQTGILAAKSMRQLFNYAKALAMQ 300
Query: 301 NPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRN 360
PA GDRVAIVTNGGGAGVMMSDGLLE GLKLAE +EETK+KFRKAIEEGKLPEHMSY N
Sbjct: 301 KPANGDRVAIVTNGGGAGVMMSDGLLERGLKLAELSEETKDKFRKAIEEGKLPEHMSYAN 360
Query: 361 PVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEGIVDVMGRVKEYGKPIVF 420
PVDVIGDAPSSRYE+AI YVLEDPNVDI+ VIALFQSPALDEGIVDVM RVK+YGKPIVF
Sbjct: 361 PVDVIGDAPSSRYELAINYVLEDPNVDILAVIALFQSPALDEGIVDVMDRVKKYGKPIVF 420
Query: 421 VAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKYLSEL 466
+APGGEFPE +ARRIEKVG+PVFETVEDGVDAVYALV YGKYLSEL
Sbjct: 421 IAPGGEFPEKIARRIEKVGVPVFETVEDGVDAVYALVKYGKYLSEL 466
>pir||E75149 succinyl-coa synthetase alpha chain related protein PAB2112 -
Pyrococcus abyssi (strain Orsay)
>gi|5457786|emb|CAB49276.1| (AJ248284) SUCCINYL-COA
SYNTHETASE ALPHA CHAIN related protein [Pyrococcus
abyssi]
Length = 472
Score = 431 bits (1097), Expect = e-120
Identities = 231/470 (49%), Positives = 309/470 (65%), Gaps = 18/470 (3%)
Query: 3 RPELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNG-----FNGKIYAVNVKGGEIEVNG 57
R +L F PR+VA+IGA++ GKVGN I + F G IY VN K EI+
Sbjct: 7 REQLRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID--- 63
Query: 58 KKFKVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD--L 115
+KVY V E+PD+ D+AVIA+PA VP+ + + EKG+K V++I+ GF E G +
Sbjct: 64 -GYKVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRM 122
Query: 116 EEELVKRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAA 175
E+E+++ AR GIRV+GPNC+GV + G D F P E+ RPK GPIAF+SQSGAF AA
Sbjct: 123 EQEILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAA 182
Query: 176 ILDWAARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAK 235
+LDWAA +G+ K +S GN D+D++D M Y D + KV+T YIEGVKDGRKF AK
Sbjct: 183 MLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAK 242
Query: 236 ETTKVKPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAK 295
TK+KP+I LK+GRTE GAKAA+SHTGSLAG IY+A FKQ+G++ A+ +F+ AK
Sbjct: 243 RVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAK 302
Query: 296 ALAMQNPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEH 355
A A KGDR+ I+T+GGGAGVM SD + + GLKLAE +EET KF K + P H
Sbjct: 303 AFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEET-IKFLKE----RFPPH 357
Query: 356 MSYRNPVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDE-GIVDVM-GRVKE 413
NP DV+GD + RY +A+ ++DPNVD +++I LFQ P LDE ++D++ K+
Sbjct: 358 AVVGNPTDVVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKK 417
Query: 414 YGKPIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKYL 463
KPIV V+ GG + A+ +E+ GIPV+ T E GV A+ LV Y KY+
Sbjct: 418 SDKPIVVVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKYV 467
>pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii
>gi|3258225|dbj|BAA30908.1| (AP000007) 472aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 472
Score = 429 bits (1092), Expect = e-119
Identities = 230/470 (48%), Positives = 305/470 (63%), Gaps = 18/470 (3%)
Query: 3 RPELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNG-----FNGKIYAVNVKGGEIEVNG 57
R +L F P++VA+IGA++ GKVGN I + F G IY VN K EIE
Sbjct: 7 REQLRPFFEPKAVAIIGATNKKGKVGNVIFENFKKNKEKGIFKGNIYPVNPKLDEIE--- 63
Query: 58 KKFKVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD--L 115
+KVY V E+PD+ D+AVIA+PA VP+ + + GEKG+K V++I+ GF E G +
Sbjct: 64 -GYKVYHDVSELPDDTDLAVIAIPAPAVPETMRKIGEKGIKSVIIITGGFGELGEEGKRM 122
Query: 116 EEELVKRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAA 175
E+E+++ AR GIRV+GPNC+GV + G D F P E+ RP GPIAF+SQSGAF AA
Sbjct: 123 EQEILEIARANGIRVIGPNCVGVYVPDTGVDTVFLPDEKMDRPPSGPIAFISQSGAFAAA 182
Query: 176 ILDWAARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAK 235
+LDWAA +G+ K +S GN D+D++D M Y D + KV+T YIEGVKDGRKF AK
Sbjct: 183 MLDWAAMAGIGIGKMVSYGNKIDVDDADLMEYFAHDDEIKVMTFYIEGVKDGRKFMETAK 242
Query: 236 ETTKVKPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAK 295
TK+KP+I LK+GRTE GAKAA+SHTGSLAG IY+A FKQ+G++ A+ +F+ AK
Sbjct: 243 RVTKIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAK 302
Query: 296 ALAMQNPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEH 355
A A KGDR+ I+T+GGGAGVM SD + + GLKLAE +EET + R+ + P H
Sbjct: 303 AFAKCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLRE-----RFPPH 357
Query: 356 MSYRNPVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEG--IVDVMGRVKE 413
NP DV+GD + RY +A+ +DPNVD +++I LFQ P LDE I + K+
Sbjct: 358 AVVGNPTDVVGDTDAERYRLALEAFTKDPNVDAILLIVLFQVPLLDEEEVINIITDYAKK 417
Query: 414 YGKPIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKYL 463
KPIV V+ GG + AR +E+ GIPV+ T E GV A+ LV Y KY+
Sbjct: 418 SDKPIVVVSMGGYKTDKYARMLEERGIPVYPTPERGVRALAGLVRYAKYI 467
>pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alpha chain
[validated] - Pyrococcus furiosus
>gi|5419966|emb|CAB46516.1| (AJ240061) acetyl-CoA
synthetase [Pyrococcus furiosus]
Length = 462
Score = 407 bits (1036), Expect = e-112
Identities = 221/466 (47%), Positives = 305/466 (65%), Gaps = 22/466 (4%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVN-GFNGKIYAVNVKGGEIEVNGKKFKVYR 64
L+ LF P+SVAVIGAS PGK+G AI+++L+ G+ GKIY VN+KGGEIE+NG+KFKVY+
Sbjct: 3 LEALFNPKSVAVIGASAKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEIEINGRKFKVYK 62
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD--LEEELVKR 122
SV EIPDEVD+AVI VPAKFVP V++ECG+KGVK V +IS+GF E G +E++LV+
Sbjct: 63 SVLEIPDEVDMAVIVVPAKFVPQVLEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
Query: 123 ARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAAR 182
ARK+G+R++GPN GV + F P + GP+A +SQSGA G A++ W
Sbjct: 123 ARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLP----GPLALISQSGALGIALMGWTIL 178
Query: 183 HEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKP 242
++G+S +S+GN AD+D++D + + KDD T+ I Y+EGVKDGR+F AKE +K KP
Sbjct: 179 EKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKP 238
Query: 243 VIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNP 302
+I++KAGR+E GAKAAASHTGSLAGS K+Y AAFKQSGVL A ++ + F++A+AL+
Sbjct: 239 IIVIKAGRSERGAKAAASHTGSLAGSDKVYSAAFKQSGVLRAYTIGEAFDWARALSNLPE 298
Query: 303 AKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPV 362
+GD V I+TNGGG GVM +D E GL L + EE K I +P SY+NPV
Sbjct: 299 PQGDNVVIITNGGGIGVMATDAAEEEGLHLYDNLEELK------IFANHMPPFGSYKNPV 352
Query: 363 DVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALD-EGIVDVMGRVKEYG-----K 416
D+ G A YE AIR L P + + V+ Q+ LD + +++ ++EY K
Sbjct: 353 DLTGMADGKSYEGAIRDALAHPEMHSIAVL-YCQTAVLDPRELAEIV--IREYNESGRKK 409
Query: 417 PIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKY 462
P+V GG + + + GIP + E + A+ AL + K+
Sbjct: 410 PLVVAIVGGIEAKEAIDMLNENGIPAYPEPERAIKALSALYKWSKW 455
>pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (strain Orsay)
>gi|5458076|emb|CAB49565.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 460
Score = 404 bits (1027), Expect = e-111
Identities = 216/466 (46%), Positives = 307/466 (65%), Gaps = 22/466 (4%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVN-GFNGKIYAVNVKGGEIEVNGKKFKVYR 64
L+ LF P+S+AVIGAS PGK+G AI+++L+ G+ GKIY VN+KGGE+E++G+KFKVY+
Sbjct: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD--LEEELVKR 122
S+ E+PDEVD+A+I VPAKFVP V++ECG+KGVK V +IS+GF E G +E++LV+
Sbjct: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
Query: 123 ARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAAR 182
ARK+G+R++GPN GV + F P + GP+A +SQSGA G A++ W
Sbjct: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLP----GPLALISQSGALGIALMGWTIL 178
Query: 183 HEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKP 242
++G+S +S+GN AD+D++D + + KDD T+ I Y+EGVKDGR+F AKE +K KP
Sbjct: 179 EKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKP 238
Query: 243 VIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNP 302
+I++KAGR+E GAKAAASHTGSLAGS IY AAFKQSGVL A ++ + F++A+AL+
Sbjct: 239 IIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPE 298
Query: 303 AKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPV 362
+GD V I+TNGGG GVM +D E GLKL + E+ K I +P SY+NPV
Sbjct: 299 PQGDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLK------IFANHMPPFGSYKNPV 352
Query: 363 DVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALD-EGIVDVMGRVKEYG-----K 416
D+ G A + YE AIR L P + ++V+ Q+ LD + +++ ++EY K
Sbjct: 353 DLTGMADAKSYEGAIRDALNHPEMHSIIVL-YCQTAVLDPRDLAEII--IREYNESGRKK 409
Query: 417 PIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKY 462
P+V GG + + + GIP + E V A+ AL + K+
Sbjct: 410 PLVVAIVGGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKW 455
>pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii
>gi|3257942|dbj|BAA30625.1| (AP000006) 460aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 460
Score = 399 bits (1013), Expect = e-110
Identities = 215/466 (46%), Positives = 306/466 (65%), Gaps = 22/466 (4%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVN-GFNGKIYAVNVKGGEIEVNGKKFKVYR 64
L+ LF P+S+AVIGAS PGK+G AI+++L+ G+ GKIY VN+KGGE+E++G+KFKVY+
Sbjct: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD--LEEELVKR 122
S+ E+PDEVD+AVI VPAK VP+V++ECG+KGVK +IS+GF E G +E++LV+
Sbjct: 63 SILEVPDEVDMAVIVVPAKSVPEVVEECGKKGVKVAPIISSGFGELGEEGKKVEQQLVET 122
Query: 123 ARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAAR 182
ARK+G+R++GPN GV + F P + GP+A +SQSGA G A++ W
Sbjct: 123 ARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLP----GPLALISQSGALGIALMGWTIL 178
Query: 183 HEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKP 242
++G+S +S+GN AD+D++D + + KDD TK I Y+EGVKDGR+F AKE +K KP
Sbjct: 179 EKIGLSAVVSVGNKADIDDADLLEFFKDDENTKAILIYMEGVKDGRRFMEVAKEVSKKKP 238
Query: 243 VIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNP 302
+I++KAGR+E GAKAAASHTGSLAGS IY AAFKQ+GVL A ++ + F++A+AL+
Sbjct: 239 IIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQTGVLRALTIGEAFDWARALSNLPE 298
Query: 303 AKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPV 362
+G+ V I+TNGGG GVM +D E GL L + E+ K I +P SY+NPV
Sbjct: 299 PQGENVVIITNGGGIGVMATDAAEEEGLHLYDDLEQLK------IFANHMPPFGSYKNPV 352
Query: 363 DVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALD-EGIVDVMGRVKEYG-----K 416
D+ G A + YE AIR L P++ ++V+ Q+ LD + DV+ ++EY K
Sbjct: 353 DLTGMADAKSYEGAIRDALAHPDMHSIIVL-YCQTAVLDPRELADVI--IREYNESGRKK 409
Query: 417 PIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKY 462
P+V GG + + + GIP + E V A+ AL + K+
Sbjct: 410 PLVVAIVGGIEAKQAIDVLNENGIPAYPEPERAVKALSALYKWSKW 455
>pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii
>gi|3257174|dbj|BAA29857.1| (AP000003) 457aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 457
Score = 384 bits (976), Expect = e-105
Identities = 212/463 (45%), Positives = 298/463 (63%), Gaps = 22/463 (4%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYRS 65
LD+ F P+ +AVIGAS+ P K+G + ++L GK+Y VN+K E EV G K Y+S
Sbjct: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK--EEEVQG--VKAYKS 57
Query: 66 VKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADL--EEELVKRA 123
VK+IPDE+D+A+I VP +FV D + +CGEKGVKGVV+I+AGF E G E+ELV+ A
Sbjct: 58 VKDIPDEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIA 117
Query: 124 RKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARH 183
K+G+R++GPNC+G+ N + F ++ G +AF+SQSGA GA I+ +
Sbjct: 118 HKYGMRIIGPNCVGIMNTHVDLNATFITVAKK-----GNVAFISQSGALGAGIVYKTIKE 172
Query: 184 EVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPV 243
++G SKFIS+GNMAD+D ++ M YL D + K I YIEGV++G+KF AK TK KP+
Sbjct: 173 DIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPI 232
Query: 244 IILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPA 303
I LKAG++E+GA+AA+SHTGSLAGS+KIYEAAFKQSGVL+A ++ ++ + A+A + P
Sbjct: 233 IALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFSQPLP- 291
Query: 304 KGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVD 363
+G++VAI+TN GG GV+ +D L + GLKLA E+T E+ R LP + +NPVD
Sbjct: 292 RGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSF-----LPPMAAVKNPVD 346
Query: 364 VIGDAPSSRYEVAIRYVLEDPNVDIVV---VIALFQSPALDEGIVDVMGRVKEYG--KPI 418
+I A Y + +L+DPNVD+++ V+ F L E ++ VKE KP+
Sbjct: 347 MIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPV 406
Query: 419 VFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGK 461
+ + G E +EK GIP +E ED A YALV K
Sbjct: 407 LAMFMAGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAK 449
>pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (strain Orsay)
>gi|5458714|emb|CAB50201.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 457
Score = 382 bits (970), Expect = e-105
Identities = 215/469 (45%), Positives = 297/469 (62%), Gaps = 24/469 (5%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYRS 65
LD+ F P+ +AVIGAS+ P K+G + ++L G +Y VNV+ E EV G K Y+S
Sbjct: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYKGGNVYPVNVR--EEEVQG--VKAYKS 57
Query: 66 VKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEE--LVKRA 123
VK+IP EVD+A+I VP KFV D + +CGEKGVKGVV+I+AGF E G +EE LV+ A
Sbjct: 58 VKDIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEIA 117
Query: 124 RKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARH 183
++G+R++GPNC+G+ N + F ++ G +AF+SQSGA GA I+ +
Sbjct: 118 HRYGMRIIGPNCVGIMNTHADLNATFITVAKK-----GNVAFISQSGALGAGIVYKTIKE 172
Query: 184 EVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPV 243
++G SKFIS+GNMADLD ++ M YL D + K I YIEG+++GRKF AK TK KPV
Sbjct: 173 DIGFSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPV 232
Query: 244 IILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPA 303
I LKAG++E+GA+AA+SHTGSLAGS+KIYEAAFKQSGVL+A ++ ++ + A+A P
Sbjct: 233 IALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQPLP- 291
Query: 304 KGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVD 363
+G RVAI+TN GG GV+ +D L + GLKLA E+T E+ R LP + +NPVD
Sbjct: 292 RGKRVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSF-----LPPMAAVKNPVD 346
Query: 364 VIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPA------LDEGIVDVMGRVKEYGKP 417
+I A Y + +L+DPNVD+++ I + + A EGI+ + V GKP
Sbjct: 347 MIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNN-GKP 405
Query: 418 IVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKYLSEL 466
++ + G E +EK GIP +E ED A YALV K + L
Sbjct: 406 VLAMFMAGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAKNVGVL 454
>gi|11498810 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448044|pir||B69401 conserved hypothetical protein
AF1211 - Archaeoglobus fulgidus
>gi|2649370|gb|AAB90033.1| (AE001020) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 685
Score = 374 bits (951), Expect = e-103
Identities = 217/459 (47%), Positives = 293/459 (63%), Gaps = 26/459 (5%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYRS 65
++ LFYP+ VAVIGAS GKVGN I+++L N F+G +YAVN K EI F Y S
Sbjct: 1 MERLFYPKVVAVIGASPQEGKVGNTIMKNLRN-FSGTVYAVNPKYREI----LGFPCYPS 55
Query: 66 VKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAG--RADLEEELVKRA 123
V +IP+ VD+A+I VPAK VP ++ECG K V+G VVISAGFKEAG A LE ELV+ A
Sbjct: 56 VLKIPENVDLAIIVVPAKLVPKAVEECGRKDVEGAVVISAGFKEAGIEGAKLERELVEVA 115
Query: 124 RKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARH 183
++G+++VGPNCLG+ N E + F+ + P+ G IAF+SQSGAF A+L+W+ R+
Sbjct: 116 ERYGVKLVGPNCLGMINTEIAMNATFS----RVAPEKGRIAFLSQSGAFILAVLEWSKRN 171
Query: 184 EVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPV 243
VG SK +SLGN A LDESDF+ YL D T VI Y+EGV+DGRKF AK + KPV
Sbjct: 172 GVGFSKVVSLGNKAMLDESDFLEYLAKDDSTDVILIYMEGVEDGRKFMRVAKSVARRKPV 231
Query: 244 IILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPA 303
+++KAG++++GAKAA+SHTGSLAGSY+ Y AAF+QSGV+ A S+ +LF++A L +
Sbjct: 232 VVMKAGKSQSGAKAASSHTGSLAGSYEAYRAAFRQSGVIEASSVEELFDFA--LLLLKYR 289
Query: 304 KGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVD 363
K +AI+TN GG GVM +D + G+ LA F ET K ++ LP ++ NPVD
Sbjct: 290 KAGNLAILTNSGGPGVMAADACDQFGVPLANFNFETIRKLKEF-----LPAESNFYNPVD 344
Query: 364 VIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEGIVDVMGRVKEYGKPIVFVAP 423
++GDA + R+ +++ + ED NVDIV+ I +P + V GK V
Sbjct: 345 ILGDASAERFSRSLQILSEDENVDIVLTIL---TPTAQMDFLKAAESV--VGKNAVCCFM 399
Query: 424 GGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKY 462
GGE + R + GIP F D V AV A+ G+Y
Sbjct: 400 GGESVDESERILRSSGIPNF---FDPVRAVRAISVLGRY 435
>pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (strain Orsay)
>gi|5458844|emb|CAB50331.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 442
Score = 369 bits (936), Expect = e-101
Identities = 214/457 (46%), Positives = 280/457 (60%), Gaps = 28/457 (6%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVNG-FNGKIYAVNVKGGEIEVNGKKFKVYR 64
+D+ FYP+SVA+ G S G + ILR++V G F GKI VN KGG +EV G++F++ +
Sbjct: 1 MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGV-KGVVVISAGFKEAGRADLEEELVKRA 123
++E EVDV+++ +PAK VP +I E KG+ KG VVISAGF E G DLEEEL+K A
Sbjct: 60 RLEE---EVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVDLEEELIKAA 114
Query: 124 RKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARH 183
++ GIR++GPNC G+ + F +F + R G +A +SQSGAFG A L
Sbjct: 115 KEAGIRIIGPNCAGIFGVHGKFFGSF-----EVRVNPGGLALISQSGAFGGAALAMGNEE 169
Query: 184 EVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPV 243
VG S F+S GN ADLDESDF+ Y DD TKVI YIEGVKDGRKFF A K T KPV
Sbjct: 170 NVGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPV 229
Query: 244 IILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPA 303
IILKAG++E+GAKAA SHTGSLAGSY+IY+A FKQ + + M +LF+ AKA M A
Sbjct: 230 IILKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAFEMYQSA 289
Query: 304 KGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVD 363
G RVA++TN GG GV+ +D L + GL++A +EET K R+ LP S RNP+D
Sbjct: 290 -GSRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREF-----LPPQCSTRNPID 343
Query: 364 VIGDAPSSRYEVAIRYVLEDPNVDIVVVIAL----FQSPALDEGIVDVMGRVKEYGKPIV 419
+I DA RY I V +D NVD ++VI + S + I++ + KPI+
Sbjct: 344 LIADADYERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAIIEA-----KCNKPII 398
Query: 420 FVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYAL 456
GE + + GI F T E A+Y L
Sbjct: 399 VNFMAGELVKKGVELLNAHGIKNFPTPERAAKALYWL 435
>pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii
>gi|3257031|dbj|BAA29714.1| (AP000003) 440aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 440
Score = 364 bits (925), Expect = 1e-99
Identities = 211/457 (46%), Positives = 283/457 (61%), Gaps = 28/457 (6%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVNG-FNGKIYAVNVKGGEIEVNGKKFKVYR 64
+D+ FYP+SVA+ G S G + ILR++V G F GKI VN KGGE+EV+G++F + R
Sbjct: 1 MDYFFYPKSVAIFG-SFRKGSIAREILRNIVEGGFEGKIIPVNPKGGEVEVSGRRFIIKR 59
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGV-KGVVVISAGFKEAGRADLEEELVKRA 123
+ E VDV++I +PAK VP +I E KG+ KG VVISAGF E G +LEEEL++ A
Sbjct: 60 KLDEF---VDVSIIVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVELEEELIRAA 114
Query: 124 RKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARH 183
++ GIR++GPNC G+ + F +F + R G +A +SQSGAFG A L
Sbjct: 115 KESGIRIIGPNCAGIFGVHGKFFGSF-----EVRVNPGGLALISQSGAFGGAALAMGNEE 169
Query: 184 EVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPV 243
VG S F+S GN ADLDESDF+ Y DD TKVI YIEGVKDGRKFF A K T KPV
Sbjct: 170 NVGFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPV 229
Query: 244 IILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPA 303
IILKAG++++GAKAA SHTGSLAGSY+IY+AAFKQ+ + + M +LF+ AKA M A
Sbjct: 230 IILKAGKSKSGAKAAQSHTGSLAGSYEIYQAAFKQANAIEVEEMEELFDAAKAFEMYKEA 289
Query: 304 KGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVD 363
G RVA++TN GG GV+ +D L + GL++A+ +E+T +K R+ LP S +NP+D
Sbjct: 290 -GSRVAVITNSGGPGVLATDKLEKLGLEIAQLSEDTVKKLREF-----LPPQCSTKNPID 343
Query: 364 VIGDAPSSRYEVAIRYVLEDPNVDIVVVIAL----FQSPALDEGIVDVMGRVKEYGKPIV 419
+I DA RY+ I V +D NVD ++VI + S + I++ + KPI+
Sbjct: 344 LIADADYERYKRTIEIVCQDENVDSLLVICVPPIFIPSEEIARAIIEA-----KCDKPII 398
Query: 420 FVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYAL 456
GE + + I F T E A+Y L
Sbjct: 399 VNFMSGELVANGVKLLNDHDIKNFPTPERAAKALYWL 435
>sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir||F64373 hypothetical
protein homolog MJ0590 - Methanococcus jannaschii
>gi|1591298|gb|AAB98580.1| (U67507) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 704
Score = 347 bits (881), Expect = 1e-94
Identities = 193/460 (41%), Positives = 280/460 (59%), Gaps = 20/460 (4%)
Query: 5 ELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYR 64
EL ++ YP+SVA+IGAS GKVG AI+++L + FNGKIY +N K EI K Y+
Sbjct: 7 ELKYISYPKSVAIIGASKTEGKVGYAIMKNLKD-FNGKIYPINPKYDEIF----GIKCYK 61
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELVKRAR 124
SV ++ D++D+AVI VP VP V++ECG+KGVKG V+I+AGF E G +LE ++ + A+
Sbjct: 62 SVLDVEDDIDLAVIVVPNIVVPKVLEECGKKGVKGAVIITAGFSEVGNYELENKIKEIAK 121
Query: 125 KWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARHE 184
++ IR++GPNCLG+ N N N + P G ++ +SQSGA AILD A
Sbjct: 122 RYNIRIIGPNCLGIMNTH----INLNATFAKVFPPKGGVSIISQSGAVLNAILDIAPLLN 177
Query: 185 VGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPVI 244
+G SK +S+GN AD+ ESD + Y DD TK++ YIEG+KD ++F AK+ +K KP+I
Sbjct: 178 IGFSKVVSIGNKADIQESDLLEYFLDDEDTKIVVLYIEGLKD-KRFLKVAKKLSKKKPII 236
Query: 245 ILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPAK 304
LK+GRTE G KAA SHTGSLAG IYEAAFK++G++ A + +L + + Q
Sbjct: 237 ALKSGRTEVGKKAAKSHTGSLAGEDVIYEAAFKEAGIIRAYTFEELVDLIHLFSTQPTIS 296
Query: 305 GDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVDV 364
+ + I+TN GG GV+ +D +++ +KL+ F + T EK + LP + NP+D+
Sbjct: 297 SNEIGIITNAGGFGVLAADSCVDYNMKLSNFEKSTIEKLKNI-----LPPTANISNPLDI 351
Query: 365 IGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPA----LDEGIVDVMGRVKEY-GKPIV 419
IGDA RY+ I + ED NV ++VI Q + + I++V KE+ KP++
Sbjct: 352 IGDATPERYKKVIEVLAEDSNVKGLLVILTPQEMTKPLEVAKSIIEVKNSHKEFKNKPLI 411
Query: 420 FVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSY 459
GG + + K GIP + T E+GV A+ L Y
Sbjct: 412 TSFVGGVSVKGAKSYLRKNGIPAYITPENGVKALSHLYKY 451
>gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giardia intestinalis]
Length = 726
Score = 316 bits (801), Expect = 4e-85
Identities = 181/464 (39%), Positives = 267/464 (57%), Gaps = 22/464 (4%)
Query: 5 ELDFLFYPRSVAVIGASHVPGKVGNAILRSLV-NGFNGKIYAVNVKGGEIEVNGKKFKVY 63
+L FL P SVAVIGAS GKVGN ++ ++ +G+ GK+Y +N EI +K Y
Sbjct: 14 KLSFLTNPASVAVIGASPNAGKVGNTVVTNIKESGYTGKVYPINPTATEI----LGYKTY 69
Query: 64 RSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGR--ADLEEELVK 121
+SV ++PD +DV ++ +P+K V EC +K VK +VVI+AGFKE G +E++L K
Sbjct: 70 KSVLDVPDSIDVVIVVIPSKAVLAAAKECAQKKVKSLVVITAGFKEIGGEGVQMEQDLTK 129
Query: 122 RARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAA 181
+ GIR+VGPNCLG+ + +C F A+P G IAF+SQSGA +ILDWA
Sbjct: 130 ICKDAGIRLVGPNCLGI--VTPNLNCTF----ASAKPSKGSIAFLSQSGAMLTSILDWAL 183
Query: 182 RHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVK 241
+ +G S FISLGN AD+DE D ++ + +DP T +I Y+E + DGRKF K
Sbjct: 184 TNGIGFSNFISLGNKADVDEVDLIMEVAEDPNTDIILLYLESIVDGRKFLEQIPTCVHKK 243
Query: 242 PVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQN 301
PVIILK+G + AGA AA+SHTG+LAG+ ++ AF+++GVL A +M LF+ +
Sbjct: 244 PVIILKSGTSAAGAAAASSHTGALAGNDIAFDLAFEKAGVLRAATMSDLFDLGRLFVSHR 303
Query: 302 PAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNP 361
KGD IVTN GG G++ +D + + +A +++TKE K LP S +NP
Sbjct: 304 LPKGDNFVIVTNAGGPGIVTTDAFETYHVGMAALSDKTKEALAKV-----LPGEASVKNP 358
Query: 362 VDVIGDAPSSRYEVAIRYVLEDP--NVDIVVVIALFQSPALDEGIVDVMGRV--KEYGKP 417
VD++GDAP RYE A+ ++P V V++ Q + ++ R+ K +
Sbjct: 359 VDIVGDAPPKRYEDALEICFKEPPETVAGAVILVTPQGQTKPCEVAELCTRMYAKYPDRL 418
Query: 418 IVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGK 461
+V GG + ++ + +PVF E + A A++ Y K
Sbjct: 419 VVSAFMGGLTMQEPSKILNNAKMPVFPFPEPAIHATGAVLKYRK 462
>gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 660
Score = 316 bits (800), Expect = 5e-85
Identities = 180/450 (40%), Positives = 263/450 (58%), Gaps = 23/450 (5%)
Query: 5 ELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYR 64
EL++LF PRS+AV+GAS KVGN I R+L++ F GK+Y +N K ++E K Y+
Sbjct: 3 ELNYLFKPRSIAVVGASRHKEKVGNVIFRNLLSTFQGKLYPINTKAEDVE----GVKAYK 58
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELVKRAR 124
SVKEIPD++D+ VIAVP + VP ++E EKGVK +VI+AGF+E G LE E++ AR
Sbjct: 59 SVKEIPDDIDLGVIAVPREVVPQTMEEFVEKGVKASIVITAGFREVGEEKLENEVISIAR 118
Query: 125 KWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARHE 184
K GIRV+GPN G+ E FN K G + + QSG G +L+WA ++
Sbjct: 119 KGGIRVLGPNTFGIITPE------FNATFTYTDVKRGNVGLVVQSGGLGVYMLNWAQKYR 172
Query: 185 VGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPVI 244
+G+S +SLGN AD+ E + + YL D +T+ I Y+EGV DG F E T+ KPV+
Sbjct: 173 IGISYMVSLGNQADVKEYEVINYLSKDAETRAIFVYLEGVSDGNAFLEELPEATRRKPVV 232
Query: 245 ILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPAK 304
LK G + +GA AA +HTGSLAGS+++++AA G ++ ++ + N AK L P
Sbjct: 233 FLKGGVSSSGASAAKTHTGSLAGSFEVFKAAVNTIGGILVDNLHDMLNLAKILMYSEPI- 291
Query: 305 GDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVDV 364
+ + ++TN GG GV++SD + ++GL+L E E K++ K + LP +NP+D+
Sbjct: 292 SEELLVITNSGGHGVLVSDEIDKNGLRLVEIPEWMKKELTKILPPTSLP-----KNPLDL 346
Query: 365 IGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEGIVDVMGRVKEYGKPIVFVAPG 424
GDA RY A++ V +V+V +L D + V+ K GK ++ V G
Sbjct: 347 TGDADRERYHNALKIVSSLDCTKLVIVQSLPMVSCSD--VARVISNFK--GKGVIGVTMG 402
Query: 425 GEFPEAMARRI-EKVGIPVFETVEDGVDAV 453
E MA +I E GIP + ED V A+
Sbjct: 403 --LDEDMALKILETTGIPGYTFPEDAVKAI 430
>emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Thermoplasma
acidophilum]
Length = 698
Score = 310 bits (785), Expect = 3e-83
Identities = 184/460 (40%), Positives = 281/460 (61%), Gaps = 27/460 (5%)
Query: 5 ELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNG-FNGKIYAVNVKGGEIEVNGKKFKVY 63
+L LFYP SVAVIGAS K+G I+R+L G + GK+Y VN KGG I + VY
Sbjct: 7 DLKSLFYPESVAVIGASADKTKIGYQIVRNLKEGGYQGKVYPVNRKGGNI----LGYTVY 62
Query: 64 RSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELVKRA 123
S+ ++PD+VD+A+I+VPA+ P+ +ECG+KGV G++V+++GF E GR DLE++LV+
Sbjct: 63 PSIGDVPDKVDLAIISVPAEHTPEAAEECGKKGVFGIIVVASGFSEVGRKDLEDQLVEVC 122
Query: 124 RKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAF--GAAILDWAA 181
RK+ +R++GPN +G+ N + +F P P G I +SQSGA G + W+
Sbjct: 123 RKYNMRLLGPNVVGLMNNVLKLNASFAP----YLPYPGTIGMVSQSGALIVGLDAMTWS- 177
Query: 182 RHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVK 241
++ G S IS+GNMADLD SD + +L +D I+ Y EG+K GR+F + A+ K
Sbjct: 178 -NKTGTSFLISIGNMADLDFSDLVSFLAEDNNVSCISLYTEGLKAGRRFIDTARSIKK-- 234
Query: 242 PVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQN 301
P+++LK+G ++ G+ AAASHTGSLAGS+++Y+ A KQ+GV+ A S+ +LF+ + L++Q
Sbjct: 235 PIVMLKSGISKHGSVAAASHTGSLAGSHRVYDGALKQAGVVRANSIEELFDLSLTLSLQP 294
Query: 302 PAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNP 361
P GD + +VTNGGG GV+ +D G+ L +++ + K R+ I P S +NP
Sbjct: 295 PMGGDNLMVVTNGGGIGVLATDQAELSGIPLQTPSDDLQAKIRQVI-----PSFGSTKNP 349
Query: 362 VDVIGDAPSSRYEVAIRYVLEDPNVDIVVV----IALFQSPALDEGIVDVMGRVKEYGK- 416
+D+ A Y I+ V+ED +VD +VV +A +GI++ G + K
Sbjct: 350 IDMSAMATPEIYADTIKTVMEDDSVDGLVVLYCEVANLDPSDAAKGIIN--GVLSSNRKI 407
Query: 417 PIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYAL 456
P+V GGE + + + K GIP F++ + V A+ AL
Sbjct: 408 PVVAGFVGGEHSKNASLYLIKNGIPTFDSPDKAVKAMAAL 447
>pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomyces coelicolor
>gi|3288603|emb|CAA19775.1| (AL031013) hypothetical
protein SC8A6.03c [Streptomyces coelicolor A3(2)]
Length = 714
Score = 302 bits (765), Expect = 6e-81
Identities = 163/384 (42%), Positives = 231/384 (59%), Gaps = 14/384 (3%)
Query: 9 LFYPRSVAVIGASHVPGKVGNAILRSLVNG-FNGKIYAVNVKGGEIEVNGKKFKVYRSVK 67
L P SVAVIGAS PGK+GN+++R+LV+G F G+I+ VN K +I K Y+SV
Sbjct: 258 LMQPASVAVIGASGEPGKIGNSVMRNLVDGGFAGEIHPVNPKADDILGR----KAYKSVT 313
Query: 68 EIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELVKRARKWG 127
++P EVDVAV A+PA+FV ++E G K + V+I +GF E G L++E+V A + G
Sbjct: 314 DVPGEVDVAVFAIPARFVAAALEEVGRKRIPNAVLIPSGFAETGEQALQDEIVAVAERHG 373
Query: 128 IRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARHEVGM 187
+R++GPN G + F P G +A SQSG G AIL +A + G+
Sbjct: 374 VRLLGPNIYGYYSTWQDLCATFCTPYDVK----GGVALTSQSGGIGMAILGFARTTKTGV 429
Query: 188 SKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPVIILK 247
S + LGN +DLDE D + + +DP T+ I ++E +KDGR F AA+ T KPV++LK
Sbjct: 430 SAIVGLGNKSDLDEDDLLTWFGEDPHTECIAMHLEDLKDGRAFVEAARATVPRKPVVVLK 489
Query: 248 AGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPAKGDR 307
AGRT AGAKAA SHTG+LAG +Y+ +Q+GV+ A + ++ YA+AL + +GD
Sbjct: 490 AGRTAAGAKAAGSHTGALAGDDAVYDDILRQAGVIRAPGLNEMLEYARALPVLPAPEGDN 549
Query: 308 VAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVDVIGD 367
V I+T GG+GV++SD + ++GL L E + FR I P + NPVD+ G
Sbjct: 550 VVIITGAGGSGVLLSDAVTDNGLSLMEIPPDLDRAFRAFI-----PPFGAAGNPVDITGG 604
Query: 368 APSSRYEVAIRYVLEDPNVDIVVV 391
P S YE IR LEDP + +V+
Sbjct: 605 EPPSTYEATIRLGLEDPRIHALVL 628
>gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entamoeba histolytica]
Length = 713
Score = 302 bits (765), Expect = 6e-81
Identities = 182/450 (40%), Positives = 262/450 (57%), Gaps = 23/450 (5%)
Query: 9 LFYPRSVAVIGASHVPGKVGNAILRSLVNG-FNGKIYAVNVKGGEIEVNGKKFKVYRSVK 67
LF P+SV VIGAS VG A++ +++ G + G +Y V G + E+ GKK Y +
Sbjct: 6 LFNPKSVPVIGASDRKESVGYAVMNNMIKGGYKGNLYPV---GRKPELFGKK--CYAKIG 60
Query: 68 EIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEE--ELVKRARK 125
+I ++VD+AVIA+PAKFVP V ECGE GVKG+++I+AGF EAG + E+ +K
Sbjct: 61 KIEEKVDLAVIAIPAKFVPGVCIECGEAGVKGLIIITAGFAEAGEEGKKMCIEIQATCQK 120
Query: 126 WGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARHEV 185
+ +R++GPNCLG+ N +G + +F P+ G +AF+SQSGA AILDWAA V
Sbjct: 121 YNMRMIGPNCLGIINPRDGVNASF----ASVMPEAGGVAFISQSGALCTAILDWAANQHV 176
Query: 186 GMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKPVII 245
G S F+S+G+ D D +D + DPK I YIE +KD +KF A+E KP+I+
Sbjct: 177 GFSYFVSIGSSIDTDYADLFEFFAKDPKVTSILMYIESIKDAKKFVLRAREFAADKPIIL 236
Query: 246 LKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPAKG 305
LKAG++ GA AA SHTGSLAG+ +Y+A F + G + S+ L++ A LA QN +
Sbjct: 237 LKAGKSSEGAAAAMSHTGSLAGNDAVYDAVFDRCGCIRVDSICDLWDCAHVLATQNIPQN 296
Query: 306 DRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVDVI 365
+R+ I+TN GG GV+ +D L+ LA+ +E T + L S+ NPVDV+
Sbjct: 297 NRLCIITNAGGPGVISTDRLVSVHGHLAKLSESTMNEL-----NAFLSPFWSHSNPVDVL 351
Query: 366 GDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEGIVDVMGRVKEYGKPIVFVAPGG 425
GDA + Y+ + V++DP +D VVV+ +P V V + E+G P G
Sbjct: 352 GDATAGVYQKTLDIVIKDPQIDGVVVVL---TPQAMTDPVAVAKSLVEHGPYQNQSLPHG 408
Query: 426 ---EFPEAMARRIEKVGIPVFETVEDGVDA 452
+ EA + +E+ IP FET E V A
Sbjct: 409 WVNQKSEAGVKILEEGKIPNFETPERAVTA 438
>gi|11499522 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483184|pir||A69492 conserved hypothetical protein
AF1938 - Archaeoglobus fulgidus
>gi|2648606|gb|AAB89317.1| (AE000970) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 673
Score = 299 bits (758), Expect = 4e-80
Identities = 185/472 (39%), Positives = 270/472 (57%), Gaps = 29/472 (6%)
Query: 2 TRPELDFLFYPRSVAVIGASHVPGKVGNAILRSLV-NGFNGKIYAVNVKGGEIEVNGKKF 60
T P+L LFYP+SVAVIGAS GK G I+ +L NGF GKIY VN +I +
Sbjct: 214 TIPDLRDLFYPKSVAVIGASRTVGKPGFNIVWNLKQNGFMGKIYPVNPNADKI----LEL 269
Query: 61 KVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGR--ADLEEE 118
K Y S+ +IPDEVD+A+IAVPAK VP+V+ EC +KG+KG V++S+GF E G A+ E
Sbjct: 270 KCYPSILDIPDEVDMAIIAVPAKIVPEVMAECAQKGIKGAVIVSSGFSEEGEKGAEYERR 329
Query: 119 LVKRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILD 178
+++ A+K GIR+ GPN GV N ENGF +F Q K G I ++Q+G F ++D
Sbjct: 330 VLEIAKKHGIRIFGPNTTGVLNTENGFITSF---AIQPVIKKGNIGIIAQTGLFLGIMMD 386
Query: 179 WAARHE--VGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKE 236
+ +G SK + +GN D+++ + + +L D +TKVI Y+EG+K+GR F++ A
Sbjct: 387 IVTSNHPSIGFSKIVGMGNKIDVEDYEVLDFLLKDEQTKVIGIYMEGIKNGRAFYDVASS 446
Query: 237 TTKVKPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKA 296
K P+++ K+GRTE G KAA SHT S+ G +++A +Q+ ++ S +LF+ KA
Sbjct: 447 AEK--PIVVFKSGRTEYGQKAAMSHTASICGDDDVFDAVCRQANLVRVYSFDELFDVTKA 504
Query: 297 LAMQNPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHM 356
++Q KGDRVAI+ G V SD GLKLAEF+++T +K + PE
Sbjct: 505 FSLQPLPKGDRVAIIHYTGSGCVQGSDAAYFAGLKLAEFSKDTVDKISEV-----TPEWH 559
Query: 357 SYRNPVD----VIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEGIVDVMGRVK 412
+ NP+D V Y+ AI V+ED VD V+ ++ + ++ +K
Sbjct: 560 NVNNPIDIWPMVEYYGAFKAYQTAIEAVMEDEGVDSVIA-CVWANRLINADFEPDYKSLK 618
Query: 413 EYGKPIVFVAPGGE---FPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGK 461
+YGKPI F G F A +E GIPV+ V + V+ + + Y K
Sbjct: 619 KYGKPIYFCVEGARDVVFDHKNA--LELNGIPVYTNVINAVNVLGKVTKYAK 668
>gi|11499106 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483131|pir||F69438 conserved hypothetical protein
AF1511 - Archaeoglobus fulgidus
>gi|2649053|gb|AAB89736.1| (AE000998) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 881
Score = 296 bits (749), Expect = 4e-79
Identities = 175/468 (37%), Positives = 267/468 (56%), Gaps = 26/468 (5%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVN-GFNGKIYAVNVKGGEIEVNGKKFKVYR 64
L F P SVAVIGAS KVG +L+ FNG Y VN I + Y
Sbjct: 191 LKHFFNPESVAVIGASRDVEKVGGRTFYNLLTYRFNGVAYPVNRAAKAI----MGVRAYP 246
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEE--LVKR 122
++ E+PDEV++AV++VP K+ +V +ECG+KGVK ++V++AGF E G +E + LV+
Sbjct: 247 TISEVPDEVELAVLSVPVKYALEVAEECGKKGVKALLVLTAGFAEVGGEGVERQKKLVEI 306
Query: 123 ARKWGIRVVGPNCLGVTNI--ENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWA 180
RK+G+R++GPNC+G+ N E F P P G IAF SQSGA G A++D
Sbjct: 307 CRKYGMRLIGPNCMGIINTAPETRLLATFAPTP----PNEGSIAFASQSGAVGLALMDRV 362
Query: 181 ARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKV 240
+ +G+S F+SLGN AD+ +D + + ++D +TK+I Y E + + RKF AK +K
Sbjct: 363 NNYGLGLSYFVSLGNSADITSNDLIEFWEEDGRTKLIMLYQESIPNPRKFARLAKRISKK 422
Query: 241 KPVIILKAGRTEAGAKAAASHTGSLAGSYKI-YEAAFKQSGVLMAKSMRQLFNYAKALAM 299
KP++ + +G T AGAKA ASHTG++ S I +A FKQ+G++ A S+ +LF+ ++ L
Sbjct: 423 KPILAIASGVTPAGAKAVASHTGAIVSSSGIAIDALFKQTGIIRASSIDELFSISEFLLH 482
Query: 300 QNPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYR 359
Q KG+RV IVTNGGG G + SD + GL++AE +E T+E R LPE S +
Sbjct: 483 QPLPKGNRVCIVTNGGGLGAITSDWCHQVGLEIAELSERTQESLRNL-----LPEIASVK 537
Query: 360 NPVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALF-----QSPALDEGIVDVMGRVKEY 414
NPVD+ A Y ++ V ED NVD ++ I + +S +++ ++
Sbjct: 538 NPVDMTASADVRMYGQTLKTVAEDENVDAIICIFVAAVSEEKSEEVEKAVISAAKYANSV 597
Query: 415 GKPIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKY 462
GKP+V++ + + + ++V +PV+ + +V Y K+
Sbjct: 598 GKPVVYIYISSDSKDGVIG--DEVKVPVYVFPNTAAKVLGKVVEYAKW 643
>gi|11498792 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483097|pir||G69398 conserved hypothetical protein
AF1192 - Archaeoglobus fulgidus
>gi|2649402|gb|AAB90053.1| (AE001022) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 664
Score = 293 bits (742), Expect = 3e-78
Identities = 183/464 (39%), Positives = 276/464 (59%), Gaps = 26/464 (5%)
Query: 5 ELDFLFYPRSVAVIGASHVPGKVGNAILRSLVN-GFNGKIYAVNVKGGEIEVNGKKFKVY 63
++ F F +SVAVIGAS K G +L +L + GF GK+Y VN GEI +K Y
Sbjct: 217 DISFFFKAKSVAVIGASRNLLKPGGRVLSNLKHLGFRGKVYPVNPNAGEI----LGYKCY 272
Query: 64 RSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRA--DLEEELVK 121
SV+ IPD+VD+AVIAVP+K +V+ EC EKGVKG++V+SAGF E +LE ++V+
Sbjct: 273 PSVRAIPDKVDLAVIAVPSKNAIEVVKECAEKGVKGIIVLSAGFAEGWEQGKELERQIVE 332
Query: 122 RARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAA 181
ARK G+R+VGPN +G+ + E+G F+ + + G I ++QSGA IL
Sbjct: 333 IARKSGMRIVGPNTMGILDPESGLTSFFSVLRKIGQ---GNIGVLAQSGAVANFIL--LP 387
Query: 182 RHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVK 241
VG SK +++GN AD+ E + + +L D KT+V+ AY+EG +GRKF+ K +TK
Sbjct: 388 LWHVGFSKIVAIGNKADVGEVEVLNFLLKDEKTRVVAAYLEGFTNGRKFYELMKASTK-- 445
Query: 242 PVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQN 301
P+++LK+GRTEAG ++A SHT S++ S +I+EAA KQ+GV +L + AKALA+Q
Sbjct: 446 PIVVLKSGRTEAGKRSALSHTASISTSEEIFEAACKQAGVAKVYDFEELVDAAKALALQP 505
Query: 302 PAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNP 361
+G RV ++ G VM +D ++E+GL+LA+++E+T E+ + PE S NP
Sbjct: 506 LPRGTRVGVIQPSGAECVMSADAVVENGLELAKYSEKTLERLYEL-----APEWHSINNP 560
Query: 362 VDVIGDAPSSRYEV---AIRYVLEDPNVDIVVVIALFQSPALDEGIVDVMGRVKEYGKPI 418
+D+ A S EV ++ ED N+D +V P++ + VD +++ KP+
Sbjct: 561 LDLYPIAEKSGDEVFNEVLKVFNEDENIDAIVAGVFI--PSIMKLGVD-FSWTRKFSKPV 617
Query: 419 VFVAPGGEFPEAMAR-RIEKVGIPVFETVEDGVDAVYALVSYGK 461
+F AR IE+ G+PV+ T E V A+ +V+ K
Sbjct: 618 LFTMKDDIEELRQARIEIERSGVPVYPTPERAVRALRHMVTVAK 661
>gi|11498537 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483066|pir||D69366 conserved hypothetical protein
AF0932 - Archaeoglobus fulgidus
>gi|2649664|gb|AAB90306.1| (AE001039) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 666
Score = 252 bits (637), Expect = 6e-66
Identities = 154/414 (37%), Positives = 233/414 (56%), Gaps = 22/414 (5%)
Query: 5 ELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYR 64
++ F F RSVAVIGAS P KVGN+++RSL++ N +IY +N EI K Y
Sbjct: 218 DISFFFKARSVAVIGASTNPIKVGNSVVRSLMSNKNLRIYPINPNASEI----LGLKAYP 273
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD---LEEELVK 121
SVK +P+ D+A++ VPA+FV D + E E GVKGVV+IS+GFKEA + EE L +
Sbjct: 274 SVKSLPEVPDIAIVTVPAEFVLDAVREAAEAGVKGVVIISSGFKEAEVEEGKVREERLRE 333
Query: 122 RARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAA 181
ARK+GIR+VGPN G+ ++ G + +F P + K G IA +SQSG I+
Sbjct: 334 IARKYGIRIVGPNTFGIVSVVGGINASFTPMFSEV--KKGRIALVSQSGGICHYIIH--K 389
Query: 182 RHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVK 241
+ G S + LGN D+D D M +L++D T V+ Y+EG+ +GR F K K
Sbjct: 390 FRDSGFSHILHLGNRCDVDFPDVMRFLREDENTDVVAVYVEGIDNGRGLFEELKRLCSEK 449
Query: 242 PVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQN 301
V+++K+GR+ KA+ SHTGS+AG Y+++ +A KQ+G ++ ++ +L + A+AM+
Sbjct: 450 KVVVMKSGRSSVADKASVSHTGSMAGDYRVFASAMKQAGAVVVETPTELID--TAIAMEK 507
Query: 302 PAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNP 361
VA++T G G++ +D + G +LA F EET K + LP NP
Sbjct: 508 FEVSGGVAVLTIQAGLGIVAADIIESSGGRLARFGEETVRKLKSL-----LPPITLRENP 562
Query: 362 VDVIGDAPSSR-YEVAIRYVLEDPNVDIVVVIALFQSPAL---DEGIVDVMGRV 411
VD+ + + + I V D +V +V+ + P+ E I +MGR+
Sbjct: 563 VDLSFSGLNLKVFAEVIDTVCRDDDVGLVMFLYAVAPPSWVLPAEVISQIMGRI 616
>pir||C82443 conserved hypothetical protein VCA0574 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657984|gb|AAF96476.1|
(AE004388) conserved hypothetical protein [Vibrio
cholerae]
Length = 893
Score = 248 bits (626), Expect = 1e-64
Identities = 153/462 (33%), Positives = 250/462 (53%), Gaps = 21/462 (4%)
Query: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVNG-FNGKIYAVNVKGGEIEVNGKKFKVYR 64
L+ L P+SVAVIGAS + GN ++++L+ G F+G I V + Y+
Sbjct: 4 LNQLLRPKSVAVIGASVRSFRAGNIVMKNLLQGGFDGAIMPVTPYYPAV----CGVLAYK 59
Query: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFK--EAGRADLEEELVKR 122
++ ++P D+A++ A + + EKGVK V+V+S+ +A +++ + +
Sbjct: 60 TISDLPIVPDIAILCTHASRNVSLFKQLAEKGVKQVIVLSSDMYSLDAQGEEIQAQCMTI 119
Query: 123 ARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAAR 182
A+ +R++GPN LG+ F+ +F+P G IAF+SQS A ILDWA
Sbjct: 120 AKSVNMRILGPNSLGLILPWMQFNGSFSPVSALK----GNIAFVSQSAAVCTTILDWAND 175
Query: 183 HEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKP 242
+G S FISLGN +D+D +D + L D T I Y++ ++D R+F +AA+ ++ +
Sbjct: 176 KGIGFSAFISLGNASDIDFADLLDTLSTDKHTDAILLYVDTIRDARRFMSAARAASRNRR 235
Query: 243 VIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNP 302
+++LK GRT+AG KAA HTG IY++A +++G+L + +LF + L P
Sbjct: 236 ILVLKGGRTKAGRKAAQMHTGGDDTLDIIYDSAIRRTGMLRVNNTHELFAAVETLTHSVP 295
Query: 303 AKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPV 362
+G+R+AI+TNGGG +M D LLE G KLA+ +E EK ++ LP+ S+ NPV
Sbjct: 296 LRGERLAIITNGGGPAIMAVDALLERGGKLAQLEDEIYEKLNQS-----LPQSWSHSNPV 350
Query: 363 DVIGDAPSSRYEVAIRYVLEDPNVDIVVVI----ALFQSPALDEGIVDVMGRVKEYGKPI 418
D++GDA RY + +LE N+D ++++ A+ S + +V+ + + +
Sbjct: 351 DIVGDADHLRYVSTLNILLESENIDAILIMHSPSAIAHSEQTAQALVEAVQKHPRAKRFN 410
Query: 419 VFVAPGGEFPEAMARRI-EKVGIPVFETVEDGVDAVYALVSY 459
+ GE AR + + GIP + T E V A LV Y
Sbjct: 411 ILTNWSGELSAKPARTLFNQAGIPTYRTPESAVTAFMHLVEY 452
>dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in UNG 3' region
[Escherichia coli]
Length = 612
Score = 218 bits (549), Expect = 1e-55
Identities = 146/473 (30%), Positives = 245/473 (50%), Gaps = 31/473 (6%)
Query: 1 MTRPELDFLFYPRSVAVIGASHVPGKVGNAILRSLV-NGFNGKIYAVNVKGGEIEVNGKK 59
M++ L+ L P+S+AVIGAS P + G ++R+L+ GFNG + V +
Sbjct: 1 MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAV----LG 56
Query: 60 FKVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEEL 119
+ + +P D+AV+ A +++E GEKG K +++SA A E+L
Sbjct: 57 VLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAP------ASQHEDL 110
Query: 120 VKRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDW 179
A + +R++GPN LG+ G + +F+P K G +AF+SQS A ILDW
Sbjct: 111 RACALRHNMRLLGPNSLGLLAPWQGLNASFSP----VPIKRGKLAFISQSAAVSNTILDW 166
Query: 180 AARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTK 239
A + ++G S FI+LG+ D+D + + YL D KT I Y+E + D R+F +AA+ ++
Sbjct: 167 AQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASR 226
Query: 240 VKPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAM 299
KP++++K+GR+ A + + AG ++AA +++G+L + +LF+ + L+
Sbjct: 227 NKPILVIKSGRSPAAQRL----LNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSH 282
Query: 300 QNPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYR 359
P +GDR+ I++NG + D L KLA +EET +K R A LPEH++
Sbjct: 283 MRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDA-----LPEHVAIS 337
Query: 360 NPVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVI--ALFQSPALDEGIVDVMGRVKEYGKP 417
NP+D+ DA S Y + +L + D ++VI +PA + V ++ VK + +
Sbjct: 338 NPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQV-LIEAVKHHPRS 396
Query: 418 ---IVFVAPGGEFPEAMARRI-EKVGIPVFETVEDGVDAVYALVSYGKYLSEL 466
+ GE ARR+ + G+P + T E + A +V Y + +L
Sbjct: 397 KYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQL 449
>sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA INTERGENIC REGION
>gi|7466397|pir||G65036 hypothetical protein b2584 -
Escherichia coli (strain K-12)
>gi|1788938|gb|AAC75637.1| (AE000344) orf, hypothetical
protein [Escherichia coli K12]
Length = 886
Score = 218 bits (549), Expect = 1e-55
Identities = 146/473 (30%), Positives = 245/473 (50%), Gaps = 31/473 (6%)
Query: 1 MTRPELDFLFYPRSVAVIGASHVPGKVGNAILRSLV-NGFNGKIYAVNVKGGEIEVNGKK 59
M++ L+ L P+S+AVIGAS P + G ++R+L+ GFNG + V +
Sbjct: 1 MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVTPAWKAV----LG 56
Query: 60 FKVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEEL 119
+ + +P D+AV+ A +++E GEKG K +++SA A E+L
Sbjct: 57 VLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAP------ASQHEDL 110
Query: 120 VKRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDW 179
A + +R++GPN LG+ G + +F+P K G +AF+SQS A ILDW
Sbjct: 111 RACALRHNMRLLGPNSLGLLAPWQGLNASFSP----VPIKRGKLAFISQSAAVSNTILDW 166
Query: 180 AARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTK 239
A + ++G S FI+LG+ D+D + + YL D KT I Y+E + D R+F +AA+ ++
Sbjct: 167 AQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASR 226
Query: 240 VKPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAM 299
KP++++K+GR+ A + + AG ++AA +++G+L + +LF+ + L+
Sbjct: 227 NKPILVIKSGRSPAAQRL----LNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSH 282
Query: 300 QNPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYR 359
P +GDR+ I++NG + D L KLA +EET +K R A LPEH++
Sbjct: 283 MRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDA-----LPEHVAIS 337
Query: 360 NPVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVI--ALFQSPALDEGIVDVMGRVKEYGKP 417
NP+D+ DA S Y + +L + D ++VI +PA + V ++ VK + +
Sbjct: 338 NPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQV-LIEAVKHHPRS 396
Query: 418 ---IVFVAPGGEFPEAMARRI-EKVGIPVFETVEDGVDAVYALVSYGKYLSEL 466
+ GE ARR+ + G+P + T E + A +V Y + +L
Sbjct: 397 KYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQL 449
>gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacterium sp. NRC-1]
Length = 542
Score = 213 bits (537), Expect = 3e-54
Identities = 117/280 (41%), Positives = 171/280 (60%), Gaps = 12/280 (4%)
Query: 166 MSQSGAFGAAILDWAARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVK 225
MSQSGAF A+LDWA +G SLGN A L E+DFM DDP T VI Y+EGV
Sbjct: 1 MSQSGAFITAVLDWANDQGIGFKDIASLGNKAVLSETDFMQAWADDPDTNVILGYLEGVD 60
Query: 226 DGRKFFNAAKETTKVKPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAK 285
DGR+F + A+E T+ P +++K+GRTEAGA+AA+SHTG++AGS YEA FKQ+GV+ A+
Sbjct: 61 DGREFIDDAREVTQDTPAVVVKSGRTEAGAQAASSHTGTIAGSEAAYEAGFKQAGVVRAE 120
Query: 286 SMRQLFNYAKALAMQNPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRK 345
++++LF++A+AL + VA++TN GG GVM +D + + L +A F ++T +
Sbjct: 121 NVQELFDFARALDGLPMPDSEDVAVITNAGGPGVMATDAVGDSRLSMASFEDDTIDAL-- 178
Query: 346 AIEEGKLPEHMSYRNPVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEGIV 405
+G +P+ + NPVDVIGDA R+ AI VL D +V +V++ +P
Sbjct: 179 ---QGSMPDEANVYNPVDVIGDAEIDRFRTAIDTVLADEHVGCALVLS---APTAVIDYT 232
Query: 406 DVMGRV----KEYGKPIVFVAPGGEFPEAMARRIEKVGIP 441
++ G + +++ KP+V GGE E + GIP
Sbjct: 233 ELSGVITALQEKHNKPVVTCLMGGERTEQATDVLGDAGIP 272
>pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelicolor
>gi|2661695|emb|CAA15799.1| (AL009204) hypothetical
protein SC9B10.09 [Streptomyces coelicolor A3(2)]
Length = 1039
Score = 199 bits (501), Expect = 5e-50
Identities = 134/404 (33%), Positives = 196/404 (48%), Gaps = 41/404 (10%)
Query: 9 LFYPRSVAVIGASHVPGKVGNAILRSLVN-GFNGKIYAVNVKGGEIEVNGKKFKVYRSVK 67
L P SVAV+GA PG VG +IL ++ + G+ G++YAVN E RSV
Sbjct: 209 LLQPGSVAVVGAGRTPGGVGRSILGNIRDAGYTGRLYAVNRAFPEDMKELDGVPACRSVG 268
Query: 68 EIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEE--LVKRARK 125
+I VD+AV+ VPA+ VPDV+ CGE GV+G+VVISAG+ ++G E + LV+ AR
Sbjct: 269 DIDGPVDLAVVTVPAEHVPDVVTACGEHGVQGLVVISAGYADSGPEGRERQRALVRHART 328
Query: 126 WGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARHE- 184
+G+R++GPN G+ N D N P+ G I +QSGA G A+L R
Sbjct: 329 YGMRIIGPNAFGIINTSP--DVRLNASLAPEMPRAGRIGLFAQSGAIGIALLSRLHRRGG 386
Query: 185 -----VGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTK 239
G+S F+S GN AD+ +D + Y DDP+T V Y+E + + RKF A+ T
Sbjct: 387 GVTGVTGVSTFVSSGNRADVSGNDVLQYWYDDPQTDVALMYLESIGNPRKFTRLARRTAA 446
Query: 240 VKPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAM 299
KP+++++ R G + + A +Q+GV+ ++ L + LA
Sbjct: 447 AKPLVVVQGAR-HGGVAPQGHAVRATRLPHATVSALLRQAGVIRVDTITDLVDAGLLLAR 505
Query: 300 QNPAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYR 359
Q G RVAI+ N G++ D L GL+ +
Sbjct: 506 QPLPAGPRVAILGNSESLGLLTYDACLSEGLRP--------------------------Q 539
Query: 360 NPVDVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALDEG 403
P+D+ A + + A+ L D D VVV A+ P L EG
Sbjct: 540 PPLDLTTAASADDFHAALARALADDTCDAVVVTAI---PTLGEG 580
>emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas mendocina]
Length = 711
Score = 199 bits (500), Expect = 7e-50
Identities = 142/468 (30%), Positives = 232/468 (49%), Gaps = 33/468 (7%)
Query: 9 LFYPRSVAVIGASHVPGKVGNA-ILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYRSVK 67
L PRSVAV+GAS P ++G I L NGF G+I VN EI+ Y SV
Sbjct: 17 LIQPRSVAVVGASSDPHRIGGRPIAYMLRNGFTGRILPVNPNRTEIQ----GLPAYASVD 72
Query: 68 EIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD--LEEELVKRARK 125
+P+ DVA+IAVPA V + + G KG + +V S+GF E G +++ +V+ AR
Sbjct: 73 ALPEAPDVAIIAVPAPQVLETVQVLGRKGARSAIVFSSGFSEVGEEGVAMQDAIVEAARA 132
Query: 126 WGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARHEV 185
+R++GPN LGV N G+ F+ + P G + +QSGA+GA +L + + +
Sbjct: 133 ANMRLLGPNALGVFNANLGYYAFFSTSLERGIPLAGRVGIATQSGAYGAHLLGLSRQRGL 192
Query: 186 GMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKV-KPVI 244
G ++ GN AD+ D + +L + P+ V+ AY E +++ F A + + KPVI
Sbjct: 193 GTPICVATGNEADVTLGDAIGWLVESPEVDVVMAYAESIRNVDSFLAALEAAHRAGKPVI 252
Query: 245 ILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPAK 304
+ K GR+E G +AA SHT SLAG K+ +A V+ A++ +L + A +
Sbjct: 253 LHKVGRSELGGRAAMSHTASLAGDDKVLDAVLADYAVVRARTTEELVDIAYLATQRIIPV 312
Query: 305 GDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVDV 364
+ + ++T GGAG+++SD + GL + EE + + ++ + + S NPVD
Sbjct: 313 NNSLGMITVSGGAGIIVSDAAEDVGLPMPPMPEEAQARLKQRL------HYASPLNPVDC 366
Query: 365 IGDAPSSRYEVAIRYVLEDPNVDIVV------VIALF----QSPALDEGIVDVMGRVK-E 413
A + ++ D +VV +IA F + ++ + + R+K +
Sbjct: 367 TAQALND------LSLVHDFTESMVVDGGYRSLIAFFTQAGTAASIGPRLAEQFARIKAD 420
Query: 414 YGKPIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGK 461
+ + V+ GE E +K G +FE V A+ A+ G+
Sbjct: 421 HPDRLFVVSVMGEGEELAP--YQKAGFALFEDPTRAVRAIQAMGQLGE 466
>pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946928|gb|AAG04406.1|AE004534_4
(AE004534) pimeloyl-CoA synthetase [Pseudomonas
aeruginosa]
Length = 715
Score = 194 bits (489), Expect = 1e-48
Identities = 142/463 (30%), Positives = 230/463 (49%), Gaps = 23/463 (4%)
Query: 9 LFYPRSVAVIGASHVPGKVGNA-ILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYRSVK 67
L PRSVAVIGAS P ++G I L +G+ G+I VN EI+ + SV
Sbjct: 21 LIEPRSVAVIGASSDPTRIGGRPIAYMLRHGYAGQILPVNPNRAEIQ----GLPAFASVA 76
Query: 68 EIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD--LEEELVKRARK 125
E+P DVA++AVPA V + + G +G + +V S+GF E G A +++ +V AR+
Sbjct: 77 ELPQAPDVAIVAVPAPQVLETVRALGRQGARSAIVFSSGFSEVGEAGAAMQDAVVAAARE 136
Query: 126 WGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAARHEV 185
G+R++GPN LG N G+ F+ + P G + +QSGA+GA +L A + +
Sbjct: 137 HGMRLLGPNALGAFNSNLGYYAFFSTSLERGVPLPGRVGIATQSGAYGAHLLGMARQRRL 196
Query: 186 GMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKV-KPVI 244
G ++ GN AD+ D + +L + P+ V+ AY E +++ F A + + KPVI
Sbjct: 197 GTPICVATGNEADVTLGDSIGWLVESPEIDVVMAYAESIRNVDSFLAALEAAHRAGKPVI 256
Query: 245 ILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNPAK 304
+ K GR+ G++AA SHT SLAG K+ +A V+ A++ +L + A +
Sbjct: 257 LHKVGRSALGSRAALSHTASLAGDDKVLDAVLGDYAVIRARTTEELMDIAYLATRRIYPV 316
Query: 305 GDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPVDV 364
G+ + ++T GGAG+++SD E GL + + +E+ + + S NPVD
Sbjct: 317 GNSLGMITVSGGAGIIVSDVAEEVGLPMPPMPDMAQERLKARL------SFASPINPVDC 370
Query: 365 IGDAPSSRYEVAIRYVLEDPNVD--IVVVIALF----QSPALDEGIVDVMGRVKEYGKPI 418
A + +R E VD ++A F + ++ + + R+KE
Sbjct: 371 TAQALNDL--TLVRDFTESMVVDGGYRSLLAFFTQAGTAASIGARLAEQFRRIKEAHPER 428
Query: 419 VFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGK 461
+FV E +A E+ G +FE V A+ A+ G+
Sbjct: 429 LFVVSVMGEGEELA-PYEEAGFALFEDPTRAVVAIQAMGRLGE 470
>pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951261|gb|AAG08363.1|AE004910_10
(AE004910) hypothetical protein [Pseudomonas aeruginosa]
Length = 696
Score = 143 bits (357), Expect = 4e-33
Identities = 135/474 (28%), Positives = 215/474 (44%), Gaps = 38/474 (8%)
Query: 1 MTRPELDFLFYPRSVAVIGASHVPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKF 60
M R L L PR +A IG + A+ R GF G+++ VN + E+E
Sbjct: 1 MNRENLKRLLAPRHLAFIGGRGM----ARALKRCAEGGFAGQLWLVNPQHAELE----GV 52
Query: 61 KVYRSVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELV 120
SV ++P D A +A + D + KG G + ++GF E G L +
Sbjct: 53 PCVASVADLPCGPDAAFVATNRELTLDAVAALAAKGAGGAICYASGFAETGEQGLAVQRR 112
Query: 121 KRARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWA 180
A + ++GPNC G+ + +G P R +A ++QSG F A L +
Sbjct: 113 LLAAAGEMALLGPNCYGLLDYLHG--AALWPVAHGGRQVERGVAVLTQSGNF-AYNLSMS 169
Query: 181 ARHEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAA-KETTK 239
R + ++ S+GN A L ++ M L D+P+ I ++EG+K+ F AA K K
Sbjct: 170 DR-SLPVAYMASVGNQAQLGIAELMDVLLDEPRVTAIGLHLEGLKNVPGFARAAYKALQK 228
Query: 240 VKPVIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAM 299
PVI LK G ++ GA A SHT SLAGS +Y++ F++ GV+ KA A
Sbjct: 229 GVPVIALKTGVSKIGAALALSHTSSLAGSDALYDSLFERLGVIRVSGPVSFVETLKAAAC 288
Query: 300 QN-PAKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSY 358
+ P VA+ +GG AG +++D +GL L F +++ G LP++ +
Sbjct: 289 GHLPGGPSLVALACSGGDAG-LIADYAERNGLGLPSFDAGQRDEL-----AGVLPDYANI 342
Query: 359 RNPVD----VIGDAPSSRYEVAIRYVLEDPNVDIVVVI-----ALFQSPALDEGIVDVMG 409
NP+D + GDA + E + L P ++V+ + P D +
Sbjct: 343 ANPLDFTTAIWGDA--AALEEMLDSALRSPADAALLVLDYPGEETGERPQCDLLLQRYCA 400
Query: 410 RVKEYGKPIVFVAPGGEFPEAMARRIEKV----GIPVFETVEDGVDAVYALVSY 459
+K +GK + F+A FPE + R ++ G+ + VEDG+ A + Y
Sbjct: 401 ALKRHGK-VGFIA--SAFPELLPARARELLHGEGVAALQGVEDGLAAWGRIARY 451
>pir||A72707 probable succinyl-CoA synthetase alpha chain APE1072 - Aeropyrum
pernix (strain K1) >gi|5104742|dbj|BAA80057.1|
(AP000060) 297aa long hypothetical succinyl-CoA
synthetase alpha chain [Aeropyrum pernix]
Length = 297
Score = 73.7 bits (178), Expect = 4e-12
Identities = 73/280 (26%), Positives = 124/280 (44%), Gaps = 33/280 (11%)
Query: 23 VPGKVGNAILRSLVNGFNGKIYAVNVKGGEIEVNGKKFKVYRSVKEI---PDEVDVAVIA 79
+ G+ G+ ++++ + V G EV+G VY SVKE E++ +++
Sbjct: 21 ITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHG--VPVYDSVKEALAEHPEINTSIVF 78
Query: 80 VPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRADLEEELVKRARKWGIRVVGPNCLGVT 139
VPA F PD + E + G++ VVVI+ G V AR+ G ++GPNC G
Sbjct: 79 VPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTM----RFVNYARQKGATIIGPNCPGA- 133
Query: 140 NIENGFDCNFNPPERQARP------KFGPIAFMSQSGAFGAAILDWAARHEVGMSKFISL 193
P + + K G +A +S+SG I R +G S I +
Sbjct: 134 ---------ITPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGI 184
Query: 194 GN--MADLDESDFMLYLKDDPKTKVITAYIE-GVKDGRKFFNAAKETTKVKPVIILKAGR 250
G + L ++ + ++DP+T+ + E G + K+ KPVI AGR
Sbjct: 185 GGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGR 244
Query: 251 TEAGAKAAASHTGSL----AGSYKIYEAAFKQSGVLMAKS 286
T A + H G++ G+Y+ A +++GV +A++
Sbjct: 245 T-APPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAET 283
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176001836
Number of Sequences: 2977
Number of extensions: 7785625
Number of successful extensions: 20007
Number of sequences better than 1.0e-10: 31
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19826
Number of HSP's gapped (non-prelim): 37
length of query: 466
length of database: 189,106,746
effective HSP length: 58
effective length of query: 408
effective length of database: 154,394,500
effective search space: 62992956000
effective search space used: 62992956000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)