BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1233 (PAB1233) DE:Hypothetical protein
         (102 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75020 hypothetical protein PAB1233 - Pyrococcus abyssi (st...   211  2e-54
pir||F71206 hypothetical protein PH1920 - Pyrococcus horikoshii ...   199  6e-51

>pir||B75020 hypothetical protein PAB1233 - Pyrococcus abyssi (strain Orsay)
           >gi|5459114|emb|CAB50600.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 102
           
 Score =  211 bits (532), Expect = 2e-54
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MNSEVIKEFLEDIGADYIELEGEIHLEPRVFYEVWKYVGEPELKTYVVEDEVVEPGEYDP 60
           MNSEVIKEFLEDIGADYIELEGEIHLEPRVFYEVWKYVGEPELKTYVVEDEVVEPGEYDP
Sbjct: 1   MNSEVIKEFLEDIGADYIELEGEIHLEPRVFYEVWKYVGEPELKTYVVEDEVVEPGEYDP 60

Query: 61  PEMKYTEARKIKIKKVYFETLDGVKVVTDYSDFQKILKETKA 102
           PEMKYTEARKIKIKKVYFETLDGVKVVTDYSDFQKILKETKA
Sbjct: 61  PEMKYTEARKIKIKKVYFETLDGVKVVTDYSDFQKILKETKA 102


>pir||F71206 hypothetical protein PH1920 - Pyrococcus horikoshii
           >gi|3258362|dbj|BAA31045.1| (AP000007) 102aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 102
           
 Score =  199 bits (501), Expect = 6e-51
 Identities = 92/102 (90%), Positives = 101/102 (98%)

Query: 1   MNSEVIKEFLEDIGADYIELEGEIHLEPRVFYEVWKYVGEPELKTYVVEDEVVEPGEYDP 60
           MNSEVIKEFLEDIGADYIELEGEIHLEP+VFYEVWKYVGEPELKTYV+EDE+VEPGEYDP
Sbjct: 1   MNSEVIKEFLEDIGADYIELEGEIHLEPKVFYEVWKYVGEPELKTYVIEDEIVEPGEYDP 60

Query: 61  PEMKYTEARKIKIKKVYFETLDGVKVVTDYSDFQKILKETKA 102
           PEM+YTEA+KIKIKKVYFETLDGVKVVTD+S+FQKI+KE K+
Sbjct: 61  PEMRYTEAKKIKIKKVYFETLDGVKVVTDHSEFQKIIKEMKS 102


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.138    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41044857
Number of Sequences: 2977
Number of extensions: 1717899
Number of successful extensions: 3078
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3076
Number of HSP's gapped (non-prelim): 2
length of query: 102
length of database: 189,106,746
effective HSP length: 53
effective length of query: 49
effective length of database: 157,386,935
effective search space: 7711959815
effective search space used: 7711959815
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 159 (66.3 bits)