BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1234 (PAB1234) DE:Hypothetical protein
(162 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75019 hypothetical protein PAB1234 - Pyrococcus abyssi (st... 319 1e-86
pir||D71206 hypothetical protein PH1918 - Pyrococcus horikoshii ... 310 4e-84
gi|11499998 A. fulgidus predicted coding region AF2422 [Archaeog... 210 7e-54
gb|AAK40956.1| Conserved hypothetical protein [Sulfolobus solfat... 175 2e-43
emb|CAB57651.1| (Y18930) hypothetical protein [Sulfolobus solfat... 175 2e-43
pir||E72455 hypothetical protein APE2289 - Aeropyrum pernix (str... 146 9e-35
pir||B69193 hypothetical protein MTH699 - Methanobacterium therm... 143 1e-33
pir||H70797 hypothetical protein Rv3735 - Mycobacterium tubercul... 142 2e-33
pir||D72407 conserved hypothetical protein - Thermotoga maritima... 139 2e-32
emb|CAC12474.1| (AL445067) conserved hypothetical protein [Therm... 127 7e-29
>pir||H75019 hypothetical protein PAB1234 - Pyrococcus abyssi (strain Orsay)
>gi|5459112|emb|CAB50598.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 162
Score = 319 bits (808), Expect = 1e-86
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MVRIEVVEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQLTRYT 60
MVRIEVVEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQLTRYT
Sbjct: 1 MVRIEVVEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQLTRYT 60
Query: 61 GNDPELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIV 120
GNDPELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIV
Sbjct: 61 GNDPELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIV 120
Query: 121 AETDLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYKID 162
AETDLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYKID
Sbjct: 121 AETDLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYKID 162
>pir||D71206 hypothetical protein PH1918 - Pyrococcus horikoshii
>gi|3258360|dbj|BAA31043.1| (AP000007) 162aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 162
Score = 310 bits (787), Expect = 4e-84
Identities = 155/162 (95%), Positives = 161/162 (98%)
Query: 1 MVRIEVVEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQLTRYT 60
MVRIEV++IEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQLTRYT
Sbjct: 1 MVRIEVIDIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQLTRYT 60
Query: 61 GNDPELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIV 120
GNDPELE LAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAM+YGASENPFQVIV
Sbjct: 61 GNDPELEALAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMIYGASENPFQVIV 120
Query: 121 AETDLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYKID 162
AET+LGR+VIGVVDGKAANKIET+EQKKERRELVEKIGYKID
Sbjct: 121 AETELGRAVIGVVDGKAANKIETDEQKKERRELVEKIGYKID 162
>gi|11499998 A. fulgidus predicted coding region AF2422 [Archaeoglobus fulgidus]
>gi|7429767|pir||G69552 hypothetical protein AF2422 -
Archaeoglobus fulgidus >gi|2650677|gb|AAB91249.1|
(AE001108) A. fulgidus predicted coding region AF2422
[Archaeoglobus fulgidus]
Length = 162
Score = 210 bits (529), Expect = 7e-54
Identities = 99/162 (61%), Positives = 132/162 (81%), Gaps = 1/162 (0%)
Query: 2 VRIEVVEIEKPE-GVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQLTRYT 60
+++E VEI P+ ++++GQ NFS+FTVDDL RALLTAVPGIK +AMNEA P+L R T
Sbjct: 1 MKLEKVEILNPDLKYQIVVGQANFSVFTVDDLFRALLTAVPGIKVAVAMNEAAPKLVRVT 60
Query: 61 GNDPELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIV 120
GND EL+K+AA+NA++I A HVFV++ NA+PIN+LNTIK HPAV V+ AS NP ++IV
Sbjct: 61 GNDEELKKIAAENALRIAASHVFVVVTSNAFPINILNTIKLHPAVCNVFVASANPIEIIV 120
Query: 121 AETDLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYKID 162
AET+LGR+V+G VDG A +IE EE+K++RREL EK+GY++D
Sbjct: 121 AETELGRAVLGAVDGAAVTRIENEEEKRQRRELCEKLGYRLD 162
>gb|AAK40956.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 163
Score = 175 bits (440), Expect = 2e-43
Identities = 95/160 (59%), Positives = 115/160 (71%), Gaps = 2/160 (1%)
Query: 2 VRIEVVEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQ-LTRYT 60
++I+VV I+ PEG VIIGQ +F I TV+DL L ++ P +KFGIA NEA + L RY
Sbjct: 4 IKIDVVRIDIPEGTNVIIGQSHF-IKTVEDLYETLSSSSPNLKFGIAFNEASSKRLIRYD 62
Query: 61 GNDPELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIV 120
GND EL KLA +NA KIGAGHVFVI +KN YPINVLN IKN V ++ A+ NP QVIV
Sbjct: 63 GNDQELIKLAIENAKKIGAGHVFVIYLKNGYPINVLNRIKNVEEVVRIFVATANPLQVIV 122
Query: 121 AETDLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYK 160
AETD GR VIGVVDG A +E+E +ER+E + KIGYK
Sbjct: 123 AETDQGRGVIGVVDGYAPLGVESEADIQERKEFLRKIGYK 162
>emb|CAB57651.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 163
Score = 175 bits (440), Expect = 2e-43
Identities = 95/160 (59%), Positives = 115/160 (71%), Gaps = 2/160 (1%)
Query: 2 VRIEVVEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQ-LTRYT 60
++I+VV I+ PEG VIIGQ +F I TV+DL L ++ P +KFGIA NEA + L RY
Sbjct: 4 IKIDVVRIDIPEGTNVIIGQSHF-IKTVEDLYETLSSSSPNLKFGIAFNEASSKRLIRYD 62
Query: 61 GNDPELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIV 120
GND EL KLA +NA KIGAGHVFVI +KN YPINVLN IKN V ++ A+ NP QVIV
Sbjct: 63 GNDQELIKLAIENAKKIGAGHVFVIYLKNGYPINVLNRIKNVEEVVRIFVATANPLQVIV 122
Query: 121 AETDLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYK 160
AETD GR VIGVVDG A +E+E +ER+E + KIGYK
Sbjct: 123 AETDQGRGVIGVVDGYAPLGVESEADIQERKEFLRKIGYK 162
>pir||E72455 hypothetical protein APE2289 - Aeropyrum pernix (strain K1)
>gi|5105990|dbj|BAA81301.1| (AP000064) 191aa long
hypothetical protein [Aeropyrum pernix]
Length = 191
Score = 146 bits (366), Expect = 9e-35
Identities = 78/160 (48%), Positives = 110/160 (68%), Gaps = 2/160 (1%)
Query: 2 VRIEVVEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAK-PQLTRYT 60
V++EVV+IE PEG VIIG+ +F I TV+DL AL+T+ P +KFGIA EA +L R+
Sbjct: 32 VKLEVVDIEIPEGANVIIGRSHF-IKTVEDLYEALVTSCPSLKFGIAFCEASGKRLVRHD 90
Query: 61 GNDPELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIV 120
GND +L K A + +KIGAGHVFV+ ++N +PINVLN IK+ V + A+ NP +V+V
Sbjct: 91 GNDEDLRKKAIEACMKIGAGHVFVVYIRNGWPINVLNAIKSVQEVVSIDAATANPVKVVV 150
Query: 121 AETDLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYK 160
A+ R+++GV DG +E E+ +ER+E + KIGYK
Sbjct: 151 ADLGEQRALLGVADGFKPLGVEGEDDIRERKEFLRKIGYK 190
>pir||B69193 hypothetical protein MTH699 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621785|gb|AAB85204.1| (AE000849)
unknown [Methanobacterium thermoautotrophicum]
Length = 168
Score = 143 bits (356), Expect = 1e-33
Identities = 73/160 (45%), Positives = 108/160 (66%), Gaps = 2/160 (1%)
Query: 2 VRIEVVEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAKPQ-LTRYT 60
+ ++ V+IE E + +I+GQ +F I TV+D+ A++ VP KFGIA EA L R
Sbjct: 9 MELKKVKIESWEDINLILGQSHF-IKTVEDIYEAIVNTVPQAKFGIAFAEASGDCLVRRA 67
Query: 61 GNDPELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIV 120
GND ELE+LAA+ ++I AGH F++ +K+A+PINVL IK+ P V +Y A+ NP +VI+
Sbjct: 68 GNDEELEELAAETMLEIAAGHSFIVFLKDAFPINVLQRIKDVPEVVNIYCATANPVEVII 127
Query: 121 AETDLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYK 160
AETD GR ++GV+DG + +IE +E R++ + IGYK
Sbjct: 128 AETDQGRGILGVIDGNSPGEIEGDEDIAARKKFLRVIGYK 167
>pir||H70797 hypothetical protein Rv3735 - Mycobacterium tuberculosis (strain
H37RV) >gi|2960159|emb|CAA18057.1| (AL022121)
hypothetical protein Rv3735 [Mycobacterium tuberculosis]
Length = 162
Score = 142 bits (355), Expect = 2e-33
Identities = 70/158 (44%), Positives = 106/158 (66%), Gaps = 2/158 (1%)
Query: 5 EVVEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAK-PQLTRYTGND 63
+VV ++KP+ V V+IGQ +F I V+DL A++ P ++FG+A EA P+L R+TGND
Sbjct: 6 DVVSVDKPDDVNVVIGQAHF-IKAVEDLHEAMVGVSPSLRFGLAFCEASGPRLVRHTGND 64
Query: 64 PELEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIVAET 123
+L +LA + A+ I AGH FVI ++ +PIN+LN ++ P V +Y A+ NP V+VA T
Sbjct: 65 GDLVELATRTALAIAAGHSFVIFLREGFPINILNPVQAVPEVCTIYCATANPVDVVVAVT 124
Query: 124 DLGRSVIGVVDGKAANKIETEEQKKERRELVEKIGYKI 161
GR ++GVVDG+ +ET+ +RR+L+ IGYK+
Sbjct: 125 PHGRGIVGVVDGQTPLGVETDRDIAQRRDLLRAIGYKL 162
>pir||D72407 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980692|gb|AAD35288.1|AE001704_9 (AE001704)
conserved hypothetical protein [Thermotoga maritima]
Length = 156
Score = 139 bits (347), Expect = 2e-32
Identities = 73/152 (48%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 7 VEIEKPEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAK-PQLTRYTGNDPE 65
+++ PE +I+G +F I TV+DL ++T P +KFGIA NEA P L RY GND E
Sbjct: 1 MDVSIPENANIILGHSHF-IKTVEDLYEVMVTTNPNLKFGIAFNEASGPCLIRYEGNDEE 59
Query: 66 LEKLAAKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIVAETDL 125
L A + A KIGAGH FVI ++ YPIN+LN IKN V +Y A+ NP QVIV T
Sbjct: 60 LVNQAIETAKKIGAGHTFVIYIRGGYPINILNQIKNVQEVCRIYTATANPLQVIVGITSQ 119
Query: 126 GRSVIGVVDGKAANKIETEEQKKERRELVEKI 157
GR+V+GVVDG + +E EE K++R + +I
Sbjct: 120 GRAVLGVVDGYSPKGVEGEEDKRKRHAFLREI 151
>emb|CAC12474.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 153
Score = 127 bits (316), Expect = 7e-29
Identities = 64/150 (42%), Positives = 96/150 (63%), Gaps = 2/150 (1%)
Query: 12 PEGVEVIIGQGNFSIFTVDDLARALLTAVPGIKFGIAMNEAK-PQLTRYTGNDPELEKLA 70
P +I+G +F I TV+DL + T VPG K+GI +EA +L RY GND +L K
Sbjct: 4 PAEANIIVGYSHF-IKTVEDLNEIIRTHVPGSKYGIGFSEASGDRLIRYDGNDDDLVKAC 62
Query: 71 AKNAVKIGAGHVFVILMKNAYPINVLNTIKNHPAVAMVYGASENPFQVIVAETDLGRSVI 130
+N +I AGH FVIL++NAYPIN+LN +K V ++ A+ NP Q+IV + + G V+
Sbjct: 63 IENIRRISAGHTFVILIRNAYPINILNAVKMCQEVGSIFAATANPLQIIVYKGERGNGVL 122
Query: 131 GVVDGKAANKIETEEQKKERRELVEKIGYK 160
GV+DG + +E++ ++RR+ + +IGYK
Sbjct: 123 GVIDGYSPVGVESDADIEKRRQFLRRIGYK 152
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.371
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54608175
Number of Sequences: 2977
Number of extensions: 2018347
Number of successful extensions: 6524
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6503
Number of HSP's gapped (non-prelim): 10
length of query: 162
length of database: 189,106,746
effective HSP length: 58
effective length of query: 104
effective length of database: 154,394,500
effective search space: 16057028000
effective search space used: 16057028000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)