BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1235 (ham1-like) DE:HAM1 PROTEIN related
(183 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75019 ham1 protein related PAB1235 - Pyrococcus abyssi (st... 377 e-104
pir||C71206 hypothetical protein PH1917 - Pyrococcus horikoshii ... 299 2e-80
gi|11499819 HAM1 protein [Archaeoglobus fulgidus] >gi|7430387|pi... 205 2e-52
sp|Q57679|NTPA_METJA NUCLEOSIDE-TRIPHOSPHATASE (NUCLEOSIDE TRIPH... 194 6e-49
pir||G69056 conserved hypothetical protein MTH1424 - Methanobact... 178 5e-44
emb|CAC11470.1| (AL445064) HAM1 protein related [Thermoplasma ac... 168 3e-41
gb|AAG20202.1| (AE005096) HAM1 protein homolog; Ham1 [Halobacter... 160 1e-38
gb|AAK40756.1| HAM1 protein [Sulfolobus solfataricus] 157 6e-38
pir||C72715 hypothetical protein APE1138 - Aeropyrum pernix (str... 146 2e-34
pir||H70318 conserved hypothetical protein aq_202 - Aquifex aeol... 119 2e-26
pir||E72410 ham1 protein - Thermotoga maritima (strain MSB8) >gi... 104 5e-22
gb|AAF52191.1| (AE003608) CG8891 gene product [Drosophila melano... 103 1e-21
pir||C69986 conserved hypothetical protein ysnA - Bacillus subti... 100 2e-20
pir||T41636 conserved hypothetical protein SPCC830.10 - fission ... 100 2e-20
gi|6322529 Ham1p [Saccharomyces cerevisiae] >gi|1346255|sp|P4711... 99 2e-20
pir||G75550 conserved hypothetical protein - Deinococcus radiodu... 99 3e-20
pir||S76403 hypothetical protein - Synechocystis sp. (strain PCC... 99 4e-20
gb|AAG00041.1| (U13642) Hypothetical protein ZC395.7 [Caenorhabd... 98 5e-20
sp|P52061|YGGV_ECOLI HYPOTHETICAL 21.0 KD PROTEIN IN GSHB-ANSB I... 94 1e-18
gb|AAB82608.1| (AF026816) putative oncogene protein [Homo sapiens] 90 1e-17
dbj|BAB06786.1| (AP001517) unknown conserved protein [Bacillus h... 90 1e-17
pir||T36125 hypothetical protein SCE19A.02c - Streptomyces coeli... 88 8e-17
pir||T05241 hypothetical protein F18A5.110 - Arabidopsis thalian... 87 1e-16
emb|CAC16798.1| (AL109976) dJ794I6.3 (putative oncogene protein)... 85 4e-16
sp|P44598|YGGV_HAEIN HYPOTHETICAL PROTEIN HI0260 >gi|1074326|pir... 85 7e-16
pir||G70130 conserved hypothetical protein BB0247 - Lyme disease... 82 5e-15
pir||C81282 hypothetical protein Cj1374c [imported] - Campylobac... 82 6e-15
pir||B72036 yggv family hypothetical protein - Chlamydophila pne... 80 2e-14
sp|Q10649|YD41_MYCTU HYPOTHETICAL 21.0 KDA PROTEIN RV1341 >gi|74... 80 2e-14
gb|AAD10059.1| (AF113952) unknown [Campylobacter jejuni] 80 2e-14
gb|AAF73731.1| (AE002266) HAM1 family protein [Chlamydophila pne... 80 2e-14
pir||H82320 HAM1 protein VC0456 [imported] - Vibrio cholerae (gr... 76 3e-13
pir||B83597 conserved hypothetical protein PA0387 [imported] - P... 72 5e-12
pir||F71323 conserved hypothetical protein TP0438 - syphilis spi... 71 7e-12
pir||B71493 hypothetical protein CT606 - Chlamydia trachomatis (... 70 2e-11
pir||E81930 hypothetical protein NMA0849 [imported] - Neisseria ... 68 6e-11
pir||T27537 hypothetical protein ZC395.7 - Caenorhabditis elegans 68 6e-11
>pir||G75019 ham1 protein related PAB1235 - Pyrococcus abyssi (strain Orsay)
>gi|5459111|emb|CAB50597.1| (AJ248288) HAM1 PROTEIN
related [Pyrococcus abyssi]
Length = 183
Score = 377 bits (958), Expect = e-104
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MKLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSP 60
MKLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSP
Sbjct: 1 MKLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSP 60
Query: 61 FFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDGDVHI 120
FFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDGDVHI
Sbjct: 61 FFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDGDVHI 120
Query: 121 FSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWLK 180
FSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWLK
Sbjct: 121 FSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWLK 180
Query: 181 ENI 183
ENI
Sbjct: 181 ENI 183
>pir||C71206 hypothetical protein PH1917 - Pyrococcus horikoshii
>gi|3258359|dbj|BAA31042.1| (AP000007) 186aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 186
Score = 299 bits (757), Expect = 2e-80
Identities = 143/184 (77%), Positives = 159/184 (85%), Gaps = 1/184 (0%)
Query: 1 MKLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSP 60
MK+FFITSNPGKVRE A F IE++QLK EYPEIQA+ LE+VV FGI WLK ++ P
Sbjct: 1 MKIFFITSNPGKVREVANFLGTFGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPEP 60
Query: 61 FFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYY-DGDVH 119
F IEDSGLFIESL GFPGVYSSYVY+TIGL+GILKLMEG EDR+AYFKSVIG+Y DG +
Sbjct: 61 FMIEDSGLFIESLKGFPGVYSSYVYRTIGLEGILKLMEGAEDRRAYFKSVIGFYIDGKAY 120
Query: 120 IFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWL 179
FSGVTWGRI+NEKRG GFGYDPIFIPEGSEKTFAEMT EEKN+LSHRGKALKAFF+WL
Sbjct: 121 KFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKNALSHRGKALKAFFEWL 180
Query: 180 KENI 183
K N+
Sbjct: 181 KVNL 184
>gi|11499819 HAM1 protein [Archaeoglobus fulgidus] >gi|7430387|pir||E69529 HAM1
protein homolog - Archaeoglobus fulgidus
>gi|2648284|gb|AAB89015.1| (AE000950) HAM1 protein
[Archaeoglobus fulgidus]
Length = 181
Score = 205 bits (517), Expect = 2e-52
Identities = 103/181 (56%), Positives = 128/181 (69%), Gaps = 3/181 (1%)
Query: 3 LFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSPFF 62
++FITSN GK RE + IE+ LK EY E Q SLEE+ + E L ++++ F
Sbjct: 1 MYFITSNEGKFREVREMASKYGIEIEWLKMEYIEPQGSSLEEIARLSAEMLAEKVEGEFV 60
Query: 63 IEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDG-DVHIF 121
IEDSGLF+E+L GFPG YSSYV+KTIG +GILKLMEG+E+RKAYF +V+ Y+DG +V F
Sbjct: 61 IEDSGLFVEALKGFPGPYSSYVFKTIGNEGILKLMEGVENRKAYFMAVVAYFDGKEVRTF 120
Query: 122 SGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWLKE 181
+G G I+ E RG GFGYDPIF+ KTFAEM TEEKN +SHR KA + FF WLKE
Sbjct: 121 TGKVEGEISREMRGTQGFGYDPIFL--YGNKTFAEMATEEKNQVSHRRKAFEEFFRWLKE 178
Query: 182 N 182
N
Sbjct: 179 N 179
>sp|Q57679|NTPA_METJA NUCLEOSIDE-TRIPHOSPHATASE (NUCLEOSIDE TRIPHOSPHATE
PHOSPHOHYDROLASE) (NTPASE) >gi|2128000|pir||C64328
conserved hypothetical protein MJ0226 - Methanococcus
jannaschii >gi|6980392|pdb|2MJP|A Chain A,
Structure-Based Identification Of The Biochemical
Function Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226 >gi|6980393|pdb|2MJP|B Chain B,
Structure-Based Identification Of The Biochemical
Function Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226 >gi|6980780|pdb|1B78|A Chain A,
Structure-Based Identification Of The Biochemical
Function Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226 >gi|6980781|pdb|1B78|B Chain B,
Structure-Based Identification Of The Biochemical
Function Of A Hypothetical Protein From Methanococcus
Jannaschii:mj0226 >gi|1590963|gb|AAB98211.1| (U67478)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 193
Score = 194 bits (488), Expect = 6e-49
Identities = 98/186 (52%), Positives = 132/186 (70%), Gaps = 4/186 (2%)
Query: 1 MKLFFITSNPGKVREAAKFFEPLK-IEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDS 59
MK++F T NP K++EA + LK +E+ Q+K YPEIQ +LEEV +FG +W+ +
Sbjct: 9 MKIYFATGNPNKIKEANIILKDLKDVEIEQIKISYPEIQG-TLEEVAEFGAKWVYNILKK 67
Query: 60 PFFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYD-GDV 118
P +EDSG F+E+LNGFPG YS +V +TIG +GILKL+EG ++R AYFK+VIGY D V
Sbjct: 68 PVIVEDSGFFVEALNGFPGTYSKFVQETIGNEGILKLLEGKDNRNAYFKTVIGYCDENGV 127
Query: 119 HIFSGVTWGRIANEKRGEG-GFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFD 177
+F G+ GR++ E R +G GF YD IFIPE E+TFAEMTTEEK+ +SHR KA + F
Sbjct: 128 RLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKK 187
Query: 178 WLKENI 183
+L + I
Sbjct: 188 FLLDRI 193
>pir||G69056 conserved hypothetical protein MTH1424 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622537|gb|AAB85901.1| (AE000904) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 187
Score = 178 bits (446), Expect = 5e-44
Identities = 90/184 (48%), Positives = 120/184 (64%), Gaps = 3/184 (1%)
Query: 1 MKLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSP 60
MK+ FIT N K+ EA K F IE++ YPE+Q +LEEV ++G E + +D P
Sbjct: 1 MKVTFITGNKHKLSEAEKIFHGTGIELMHADLGYPELQG-TLEEVARYGAEHAARIMDGP 59
Query: 61 FFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYY--DGDV 118
+ED+GLFI +L FPG YS+YV TIG GILKLME +EDR A F+S +G+ + +
Sbjct: 60 VIVEDAGLFIRALKWFPGPYSAYVQDTIGNRGILKLMENVEDRYAEFRSAVGFCTPNSEP 119
Query: 119 HIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDW 178
+F GV GRI E+RG GF +DP+F PEG +K+F E++T EKN SHR +ALK F +W
Sbjct: 120 EVFLGVVKGRIGTEERGTMGFAFDPLFYPEGMDKSFGELSTSEKNRFSHRSRALKKFAEW 179
Query: 179 LKEN 182
EN
Sbjct: 180 YIEN 183
>emb|CAC11470.1| (AL445064) HAM1 protein related [Thermoplasma acidophilum]
Length = 187
Score = 168 bits (422), Expect = 3e-41
Identities = 82/179 (45%), Positives = 118/179 (65%), Gaps = 1/179 (0%)
Query: 5 FITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSPFFIE 64
F+TSN K E ++ IE+ ++ +Y EIQ DS E + L + +++P+F++
Sbjct: 4 FVTSNRHKFEEVSEMAALYGIEIEWVRMKYEEIQDDSTERISYDSCNKLSRIVEAPYFVD 63
Query: 65 DSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDG-DVHIFSG 123
DSGLFI +L GFPG YS+YV TIG +GILK+M+ ++DR AYF +V+ +G + F G
Sbjct: 64 DSGLFINALRGFPGPYSNYVSSTIGNEGILKIMDDVDDRTAYFLTVVSMNEGHSITQFIG 123
Query: 124 VTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWLKEN 182
G+IA RG GFGYDPIFIPEGS++TFAEM + KN++SHR A + F+++K N
Sbjct: 124 KVMGKIARSIRGSNGFGYDPIFIPEGSDRTFAEMDIKAKNAISHRSIAFRGLFEYIKMN 182
>gb|AAG20202.1| (AE005096) HAM1 protein homolog; Ham1 [Halobacterium sp. NRC-1]
Length = 184
Score = 160 bits (400), Expect = 1e-38
Identities = 84/182 (46%), Positives = 119/182 (65%), Gaps = 7/182 (3%)
Query: 3 LFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEID--SP 60
L F+T+N GKV+EAA + + L+ V QL +Y E+Q+D L + G +E D +P
Sbjct: 4 LRFVTTNSGKVQEAASYLDGLR-RVEQLDYDYAELQSDDLAAIATHGAREAYRETDDDTP 62
Query: 61 FFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDGD-VH 119
++D+GLF+ L+GFPG YS+YV T+G++ + +L ++DR A F+ V+ Y DGD V
Sbjct: 63 VIVDDAGLFVRGLSGFPGPYSAYVEDTLGIERVWELASDLDDRHAAFRCVVAYTDGDTVE 122
Query: 120 IFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWL 179
F+G G + RG+GGFGYDPIF +G+ TFAEM T+ KN+LSHRG+AL F DWL
Sbjct: 123 TFTGAVQGTMV-APRGDGGFGYDPIFEHDGT--TFAEMPTDRKNALSHRGRALATFADWL 179
Query: 180 KE 181
E
Sbjct: 180 AE 181
>gb|AAK40756.1| HAM1 protein [Sulfolobus solfataricus]
Length = 192
Score = 157 bits (394), Expect = 6e-38
Identities = 80/181 (44%), Positives = 115/181 (63%), Gaps = 1/181 (0%)
Query: 1 MKLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSP 60
+K+ +T+N K E + + IE+ L+ E EIQ+D LEE+ + P
Sbjct: 6 VKIGVLTNNENKFIELKEIAKNFNIELEHLRGEKIEIQSDDLEEISRTAANLAYLIFRRP 65
Query: 61 FFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDGD-VH 119
++DSGLF+++L FPG Y+++V TIGL GILKL+EGI+DR AYF + + + DG +
Sbjct: 66 LIVDDSGLFVQALQNFPGPYTNFVKNTIGLKGILKLLEGIKDRSAYFMTALTFTDGKIIK 125
Query: 120 IFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWL 179
F G+ G I+ E RG GFG+DPIFIPEG ++TFAEM+ EEKN SHR +A F ++L
Sbjct: 126 TFIGIVKGAISEEIRGNLGFGFDPIFIPEGEKRTFAEMSLEEKNRYSHRARAFAKFAEFL 185
Query: 180 K 180
+
Sbjct: 186 E 186
>pir||C72715 hypothetical protein APE1138 - Aeropyrum pernix (strain K1)
>gi|5104808|dbj|BAA80123.1| (AP000060) 162aa long
hypothetical protein [Aeropyrum pernix]
Length = 162
Score = 146 bits (364), Expect = 2e-34
Identities = 73/156 (46%), Positives = 99/156 (62%), Gaps = 1/156 (0%)
Query: 25 IEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSPFFIEDSGLFIESLNGFPGVYSSYV 84
+EV Q + E+Q++SLEE+ ++ P +ED+GLFI +LNGFPG YSSY
Sbjct: 1 MEVEQAQAWKLEVQSESLEEIALRAARVAYAQLRRPLAVEDAGLFINALNGFPGPYSSYA 60
Query: 85 YKTIGLDGILKLMEGIEDRKAYFKSVIGYYDGDV-HIFSGVTWGRIANEKRGEGGFGYDP 143
YKTIG+ G+L+L+EG DR A FK+ + Y V +F+G G IA E RG GFG+DP
Sbjct: 61 YKTIGIPGVLRLLEGAADRGACFKAAVAYVAPLVERVFTGEVCGSIAREPRGSQGFGFDP 120
Query: 144 IFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWL 179
IF+PEG TFAE+ KN +SHR +A + +WL
Sbjct: 121 IFVPEGYSSTFAELGPGVKNRISHRARAFRRLGEWL 156
>pir||H70318 conserved hypothetical protein aq_202 - Aquifex aeolicus
>gi|2982934|gb|AAC06551.1| (AE000678) hypothetical
protein [Aquifex aeolicus]
Length = 202
Score = 119 bits (296), Expect = 2e-26
Identities = 75/197 (38%), Positives = 103/197 (52%), Gaps = 18/197 (9%)
Query: 1 MKLFFITSNPGKVREAAKFFEPLKIEVI--QLKREYPEIQADSLEEVVKFGIEWLKKEID 58
MKL T+N GK RE + IEV+ + K E E LE + ++
Sbjct: 1 MKLLVATTNEGKYREIKEILSEYGIEVLKPEEKLEVEETGCTFLENAYLKARAYYER-YK 59
Query: 59 SPFFIEDSGLFIESLNGFPGVYSSYVYKT--------------IGLDGILKLMEGIEDRK 104
P +DSGL +E+++ +PGVYSS Y + +L+L+E E+RK
Sbjct: 60 IPALADDSGLIVEAISPYPGVYSSRFYDIDFGGREEVRTNKDEANIRKLLRLLENTENRK 119
Query: 105 AYFKSVIGYYDGDVHIFS-GVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKN 163
A F + I Y G IF+ G G I E RG+ GFGYDP+F+PEG KT AE++ EEKN
Sbjct: 120 AKFVAFIVVYGGSWGIFAEGEVRGEITKEPRGDRGFGYDPVFVPEGYNKTMAELSPEEKN 179
Query: 164 SLSHRGKALKAFFDWLK 180
+SHRG+AL+ LK
Sbjct: 180 KISHRGRALRKLVHVLK 196
>pir||E72410 ham1 protein - Thermotoga maritima (strain MSB8)
>gi|4980653|gb|AAD35252.1|AE001701_5 (AE001701) ham1
protein [Thermotoga maritima]
Length = 196
Score = 104 bits (258), Expect = 5e-22
Identities = 76/197 (38%), Positives = 110/197 (55%), Gaps = 27/197 (13%)
Query: 1 MKLFFITSNPGKVRE----AAKFFE----PLKIEVIQLKREYPEIQADSLEEVVKFGIEW 52
+ ++ T+NP KV E A ++ E P KIEV++ + E +S+++ V +G
Sbjct: 4 LTVYLATTNPHKVEEIKMIAPEWMEILPSPEKIEVVEDGETFLE---NSVKKAVVYG--- 57
Query: 53 LKKEIDSPFFIEDSGLFIESLNGFPGVYSS-----YVYKTIGLDGILKLMEGIEDRKAYF 107
K++ P +DSGL I SL GFPGV S+ + YK + ILK++EG +DR+A F
Sbjct: 58 --KKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKE-KMRTILKMLEG-KDRRAAF 113
Query: 108 KSVIGYYDGDVHIFSGV---TWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNS 164
++D + V GRIANE RG GGFGYDP FIP+G +KTF E+ K
Sbjct: 114 VCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGEI-PHLKEK 172
Query: 165 LSHRGKALKAFFDWLKE 181
+SHR KA + F L++
Sbjct: 173 ISHRSKAFRKLFSVLEK 189
>gb|AAF52191.1| (AE003608) CG8891 gene product [Drosophila melanogaster]
Length = 191
Score = 103 bits (255), Expect = 1e-21
Identities = 58/172 (33%), Positives = 94/172 (53%), Gaps = 6/172 (3%)
Query: 5 FITSNPGKVREAAKFFEP-LKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSPFFI 63
F+T N K+ E P ++ K + PE+Q D ++E+ + ++++ P +
Sbjct: 7 FVTGNAKKLEELVAILGPSFPRTIVSKKIDLPELQGD-IDEIAIKKCKEAARQVNGPVLV 65
Query: 64 EDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDG---DVHI 120
ED+ L +L G PG Y + + + +G+ +L+ G E++ A GY DG + I
Sbjct: 66 EDTSLCFNALEGLPGPYIKWFLEKLQPEGLHRLLHGWENKSAQAICTFGYCDGVDAEPLI 125
Query: 121 FSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKAL 172
F G+T G I E RG FG+DP+F P G +KT+AE+ EKN++SHR +AL
Sbjct: 126 FKGITEGVIV-EPRGPRDFGWDPVFQPSGYDKTYAELPKSEKNTISHRYRAL 176
>pir||C69986 conserved hypothetical protein ysnA - Bacillus subtilis
>gi|1770060|emb|CAA99555.1| (Z75208) hypothetical
protein [Bacillus subtilis] >gi|2635301|emb|CAB14796.1|
(Z99118) similar to hypothetical proteins [Bacillus
subtilis]
Length = 198
Score = 99.8 bits (245), Expect = 2e-20
Identities = 67/180 (37%), Positives = 92/180 (50%), Gaps = 13/180 (7%)
Query: 7 TSNPGKVREAAKFFEPLKIEVIQLKR----EYPEIQADSLEEVVKFGIEWLKKEIDSPFF 62
T NPGKV+E + EP +V L E E + EE E + K ++
Sbjct: 11 THNPGKVKEFKEILEPRGYDVKSLAEIGFTEEIEETGHTFEENAIMKAEAVAKAVNKMVI 70
Query: 63 IEDSGLFIESLNGFPGVYSSYVY-----KTIGLDGILKLMEGIE--DRKAYFKSVIGYY- 114
+DSGL I++L G PGVYS+ ++ +L ++GIE R A F+ +
Sbjct: 71 ADDSGLSIDNLGGRPGVYSARYAGEQKDDQANIEKVLSELKGIEKEQRTARFRCALAVSI 130
Query: 115 -DGDVHIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALK 173
+ G G IA E RGE GFGYDPIFI + +KT AE+T++EKN +SHR ALK
Sbjct: 131 PGEETKTVEGHVEGYIAEEPRGEYGFGYDPIFIVKDKDKTMAELTSDEKNKISHRADALK 190
>pir||T41636 conserved hypothetical protein SPCC830.10 - fission yeast
(Schizosaccharomyces pombe) >gi|5738875|emb|CAB52883.1|
(AL109850) conserved hypothetical protein
[Schizosaccharomyces pombe]
Length = 188
Score = 99.8 bits (245), Expect = 2e-20
Identities = 57/181 (31%), Positives = 96/181 (52%), Gaps = 6/181 (3%)
Query: 3 LFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSPFF 62
+ F+T N K+ + + E+ + PEIQ S++EVV + + + P
Sbjct: 7 ILFVTGNKHKLADVKNILGD-RFEIKNHDYDLPEIQG-SVKEVVLEKCKAAAEIVKGPVL 64
Query: 63 IEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDGD---VH 119
+ED+ L +++NG PG Y + ++G DG+ +++ + ++A GY G +H
Sbjct: 65 VEDTWLGYKAMNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKEAQAGCTFGYTKGPGKPIH 124
Query: 120 IFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWL 179
+F G+ G++ RG GFG++ IF P G + T+AEMT EE+NS SHR A D+L
Sbjct: 125 LFEGILDGQVV-PPRGSNGFGWNSIFQPNGHKHTYAEMTDEERNSCSHRYLAAMKLRDFL 183
Query: 180 K 180
+
Sbjct: 184 E 184
>gi|6322529 Ham1p [Saccharomyces cerevisiae] >gi|1346255|sp|P47119|HAM1_YEAST
HAM1 PROTEIN >gi|1077887|pir||S57088
6-N-hydroxylaminopurine sensitivity-controlling protein
HAM1 [validated] - yeast (Saccharomyces cerevisiae)
>gi|1015749|emb|CAA89597.1| (Z49569) ORF YJR069c
[Saccharomyces cerevisiae] >gi|1019691|gb|AAB39295.1|
(L47993) ORF YJR069c [Saccharomyces cerevisiae]
Length = 197
Score = 99.5 bits (244), Expect = 2e-20
Identities = 64/194 (32%), Positives = 100/194 (50%), Gaps = 16/194 (8%)
Query: 2 KLFFITSNPGKVREAAKFFEP------LKIEVIQLKREYPEIQADSLEEVV----KFGIE 51
++ F+T N K++E I +I + E+Q L + K +
Sbjct: 5 EIVFVTGNANKLKEVQSILTQEVDNNNKTIHLINEALDLEELQDTDLNAIALAKGKQAVA 64
Query: 52 WLKKEIDSPFFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVI 111
L K P F+ED+ L + NG PG Y + K++GL+ I+K++E E++ A + I
Sbjct: 65 ALGK--GKPVFVEDTALRFDEFNGLPGAYIKWFLKSMGLEKIVKMLEPFENKNAEAVTTI 122
Query: 112 GYYD--GDVHIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSE-KTFAEMTTEEKNSLSHR 168
+ D G+ H F G+T G+I RG FG+D IF P S T+AEM+ + KN++SHR
Sbjct: 123 CFADSRGEYHFFQGITRGKIV-PSRGPTTFGWDSIFEPFDSHGLTYAEMSKDAKNAISHR 181
Query: 169 GKALKAFFDWLKEN 182
GKA F ++L +N
Sbjct: 182 GKAFAQFKEYLYQN 195
>pir||G75550 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457848|gb|AAF09767.1|AE001880_4 (AE001880)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 200
Score = 99.1 bits (243), Expect = 3e-20
Identities = 66/176 (37%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Query: 7 TSNPGKVREAAKFFEPLKIEVIQLKR-EYPEIQADSLEEVVKFGIEWLKKEIDSPFFIED 65
TSN GKVRE PL + L PE + EE P +D
Sbjct: 19 TSNAGKVRELQGALAPLGWQCEGLGAVTLPEETGSTYEENAALKACAAAMATGLPALADD 78
Query: 66 SGLFIESLNGFPGVYSSYVYKTIGLDG-----ILKLMEGIEDRKAYFKSVI--GYYDGDV 118
SG+ + +L G PGVYS+ + + D +L+ M DR+A F SV+ Y DG +
Sbjct: 79 SGIEVLALGGQPGVYSAR-FGNVNSDVERNVLLLEKMRRHTDRRAKFVSVLVLAYPDGKL 137
Query: 119 HIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKA 174
+ G G++ RGE GFGYDP+F+P+GSE + EMT E+K ++SHRG+AL A
Sbjct: 138 EEYRGEVTGQLLEGPRGESGFGYDPLFLPDGSELSMGEMTLEQKQAISHRGQALAA 193
>pir||S76403 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653620|dbj|BAA18532.1| (D90915) hypothetical
protein [Synechocystis sp.]
Length = 194
Score = 98.7 bits (242), Expect = 4e-20
Identities = 65/184 (35%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Query: 3 LFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQ--ADSLEEVVKFGIEWLKKEIDSP 60
L T NPGK+ E + EPL + + LK E++ + E + K ++
Sbjct: 4 LIVATGNPGKLAEMQTYLEPLGCQ-LTLKPTEIEVEETGSTFYENACLKASQVAKAVNQW 62
Query: 61 FFIEDSGLFIESLNGFPGVYSSYVYKTIG--LDGILKLMEGIEDRKAYFKSVIGYY--DG 116
+DSGL +++L+G PG+YS+ T + +L+ +EG+ R+A F V+ DG
Sbjct: 63 AIADDSGLAVDALDGAPGLYSARYGNTDRERIAKLLQALEGVSQRQAQFICVVSIAAPDG 122
Query: 117 DVHIFS-GVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKAL-KA 174
+ + + G+ G I + RG+ GFGYDPIF +KTFAEMT EK +SHRGKA K
Sbjct: 123 SIQLSTKGICSGEITHSPRGDQGFGYDPIFWLPEHKKTFAEMTKVEKQKVSHRGKAFNKL 182
Query: 175 FFDW 178
W
Sbjct: 183 IHQW 186
>gb|AAG00041.1| (U13642) Hypothetical protein ZC395.7 [Caenorhabditis elegans]
Length = 184
Score = 98.3 bits (241), Expect = 5e-20
Identities = 54/184 (29%), Positives = 94/184 (50%), Gaps = 7/184 (3%)
Query: 2 KLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSPF 61
K+ F+T N K+ E + EV + + E Q + E + + + + P
Sbjct: 5 KINFVTGNVKKLEEVKAILK--NFEVSNVDVDLDEFQGEP-EFIAERKCREAVEAVKGPV 61
Query: 62 FIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDG---DV 118
+ED+ L ++ G PG Y + K + +G+ ++ G D+ AY + + Y +G +
Sbjct: 62 LVEDTSLCFNAMGGLPGPYIKWFLKNLKPEGLHNMLAGFSDKTAYAQCIFAYTEGLGKPI 121
Query: 119 HIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDW 178
H+F+G G+I RG+ FG+DP F P+G ++TF EM + KN +SHR KAL+ ++
Sbjct: 122 HVFAGKCPGQIV-APRGDTAFGWDPCFQPDGFKETFGEMDKDVKNEISHRAKALELLKEY 180
Query: 179 LKEN 182
+ N
Sbjct: 181 FQNN 184
>sp|P52061|YGGV_ECOLI HYPOTHETICAL 21.0 KD PROTEIN IN GSHB-ANSB INTERGENIC REGION (O197)
>gi|7430391|pir||A65081 hypothetical protein b2954 -
Escherichia coli (strain K-12) >gi|882483|gb|AAA69121.1|
(U28377) ORF_o197 [Escherichia coli]
>gi|1789324|gb|AAC75991.1| (AE000378) putative ribosomal
protein [Escherichia coli K12]
Length = 197
Score = 93.6 bits (229), Expect = 1e-18
Identities = 69/197 (35%), Positives = 94/197 (47%), Gaps = 22/197 (11%)
Query: 2 KLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIE-------WLK 54
K+ T N GKVRE A ++++ ++ DS EE IE
Sbjct: 3 KVVLATGNVGKVRELASLLSDFGLDIVA----QTDLGVDSAEETGLTFIENAILKARHAA 58
Query: 55 KEIDSPFFIEDSGLFIESLNGFPGVYSSYVYKTIGLD--GILKLMEGIED-----RKAYF 107
K P +DSGL ++ L G PG+YS+ D + KL+E ++D R+A F
Sbjct: 59 KVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARF 118
Query: 108 KSVIGYY----DGDVHIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKN 163
V+ Y D + G G I E G GGFGYDPIF KT AE+T EEK+
Sbjct: 119 HCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKS 178
Query: 164 SLSHRGKALKAFFDWLK 180
++SHRG+ALK D L+
Sbjct: 179 AISHRGQALKLLLDALR 195
>gb|AAB82608.1| (AF026816) putative oncogene protein [Homo sapiens]
Length = 157
Score = 90.5 bits (221), Expect = 1e-17
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
Query: 24 KIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSPFFIEDSGLFIESLNGFPGVYSSY 83
KI++ + + E EI +E V+ ++ P +ED+ L +L G PG Y +
Sbjct: 2 KIDLPEYQGEPDEISIQKCQEAVR--------QVQGPVLVEDTCLCFNALGGLPGPYIKW 53
Query: 84 VYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDGD----VHIFSGVTWGRIANEKRGEGGF 139
+ + +G+ +L+ G ED+ AY GD V +F G T GRI RG F
Sbjct: 54 FLEKLKPEGLHQLLAGFEDKSAYALCTFALSTGDPSQPVRLFRGRTSGRIV-APRGCQDF 112
Query: 140 GYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKAL 172
G+DP F P+G E+T+AEM EKN++SHR +AL
Sbjct: 113 GWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRAL 145
>dbj|BAB06786.1| (AP001517) unknown conserved protein [Bacillus halodurans]
Length = 194
Score = 90.5 bits (221), Expect = 1e-17
Identities = 65/187 (34%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 7 TSNPGKVREAAKFFEPLKIEVIQLKREYPEIQ-----ADSLEEVVKFGIEWLKKEIDSPF 61
T N GKV E V L +YP I+ + E E + + P
Sbjct: 8 TKNKGKVAEFEAILGKRGFSVKSLL-DYPAIEDIEETGSTFNENATIKAEAIAERFQRPV 66
Query: 62 FIEDSGLFIESLNGFPGVYSSYVYKTIGLD--GILKLMEGIED-----RKAYFKSVIGYY 114
+DSGL I++L+G PG++S+ D I K++ ++D R A F I
Sbjct: 67 LADDSGLIIDALDGRPGIFSARYAGEEKDDQKNIEKVLRELQDIPWKARTARFHCSIALA 126
Query: 115 --DGDVHIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKAL 172
+ +F G G I E +G GGFGYDPIF +KT AE+T EEKN LSHR AL
Sbjct: 127 RPQAETIVFEGTCEGYITTEPKGTGGFGYDPIFYVPSHDKTMAELTQEEKNKLSHRYHAL 186
Query: 173 KAFFDWL 179
K WL
Sbjct: 187 KQLDKWL 193
>pir||T36125 hypothetical protein SCE19A.02c - Streptomyces coelicolor
>gi|5531351|emb|CAB50983.1| (AL096852) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 200
Score = 87.8 bits (214), Expect = 8e-17
Identities = 67/196 (34%), Positives = 93/196 (47%), Gaps = 17/196 (8%)
Query: 2 KLFFITSNPGKVREAAKFFEPLKIEVIQLKRE-YPEIQADSLEEVVKFGIEWLKKE---- 56
+L T N GK+ E + + + YP I D E V F L K
Sbjct: 3 RLILATRNAGKITELRAILADAGLPHDLVGADAYPHIP-DVKETGVTFAENALLKAHALA 61
Query: 57 --IDSPFFIEDSGLFIESLNGFPGVYSSYVYKTIG-----LDGILKLMEGIED--RKAYF 107
P +DSGL ++ LNG PG++S+ G LD +L + I D R A+F
Sbjct: 62 EATGLPAVADDSGLCVDVLNGAPGIFSARWAGRHGDDQANLDLLLAQIADIADEHRGAHF 121
Query: 108 K--SVIGYYDGDVHIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSL 165
+ + DG + G G + + G GGFGYDPI PEG +T AE+T EEKN++
Sbjct: 122 ACAAALALPDGTERVVEGQLKGTLRHAPAGTGGFGYDPILQPEGETRTCAELTAEEKNAI 181
Query: 166 SHRGKALKAFFDWLKE 181
SHRGKA +A ++E
Sbjct: 182 SHRGKAFRALVPVVRE 197
>pir||T05241 hypothetical protein F18A5.110 - Arabidopsis thaliana
>gi|4455301|emb|CAB36836.1| (AL035528) putative protein
[Arabidopsis thaliana] >gi|7268076|emb|CAB78414.1|
(AL161537) putative protein [Arabidopsis thaliana]
Length = 231
Score = 87.4 bits (213), Expect = 1e-16
Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 5 FITSNPGKVREAAKF------FEPLKIE--VIQLKREYPEIQA---DSLEEVVKFGIEWL 53
F+T N K+ E F+ LK++ +I PE+Q D +E +E +
Sbjct: 18 FVTGNAKKLEEVKAIIGNSIPFKSLKLDCALIVYFLAVPELQGEPEDISKEKAHILLELI 77
Query: 54 KKEI------------DSPFFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIE 101
K I D P +ED+ L +L G PG Y + + +G +G+ L+ E
Sbjct: 78 TKVIIFVFMCKLASYVDGPVLVEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLLMAYE 137
Query: 102 DRKAYFKSVIGYYDG---DVHIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMT 158
D+ AY + G + F G T G+I RG FG+DP+F P+G ++T+AEM
Sbjct: 138 DKSAYALCAFSFSRGPGAEPLTFLGKTPGKIV-PARGPTDFGWDPVFQPDGYDQTYAEMA 196
Query: 159 TEEKNSLSHRGKALKAFFDWLKE 181
EEKN +SHR K+L KE
Sbjct: 197 KEEKNKISHRYKSLALVKSHFKE 219
>emb|CAC16798.1| (AL109976) dJ794I6.3 (putative oncogene protein) [Homo sapiens]
Length = 131
Score = 85.4 bits (208), Expect = 4e-16
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
Query: 57 IDSPFFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDG 116
+ P +ED+ L +L G PG Y + + + +G+ +L+ G ED+ AY G
Sbjct: 1 VQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFALSTG 60
Query: 117 D----VHIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKAL 172
D V +F G T GRI RG FG+DP F P+G E+T+AEM EKN++SHR +AL
Sbjct: 61 DPSQPVRLFRGRTSGRIV-APRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRAL 119
>sp|P44598|YGGV_HAEIN HYPOTHETICAL PROTEIN HI0260 >gi|1074326|pir||D64146 hypothetical
protein HI0260 - Haemophilus influenzae (strain Rd KW20)
>gi|1573226|gb|AAC21925.1| (U32712) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 195
Score = 84.7 bits (206), Expect = 7e-16
Identities = 65/185 (35%), Positives = 85/185 (45%), Gaps = 14/185 (7%)
Query: 2 KLFFITSNPGKVREAAKFFEPLKIEVI---QLKREYPEIQADSLEEVVKFGIEWLKKEID 58
K+ T N GKV+E A EVI L E PE + E + ++
Sbjct: 4 KIVLATGNKGKVKEMADVLSDFGFEVIAQTDLGIESPEETGLTFVENALLKARYASEKSG 63
Query: 59 SPFFIEDSGLFIESLNGFPGVYSSYVYKTIGLDG-----ILKLMEGI--EDRKAYFKSVI 111
P +DSGL + +LNG PG+YS+ G D +L + I E R+A F S I
Sbjct: 64 LPAIADDSGLVVSALNGAPGLYSARYAGEEGNDAKNREKLLAELAHIAQEQRQAKFVSCI 123
Query: 112 GYY----DGDVHIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSH 167
+ D I G G I E++GE GFGYD +F TFAE+ T EK +SH
Sbjct: 124 VFLQHPTDPSPIIAEGECCGVIGFEEKGENGFGYDSLFFSPEQGCTFAELETAEKKKISH 183
Query: 168 RGKAL 172
R KAL
Sbjct: 184 RAKAL 188
>pir||G70130 conserved hypothetical protein BB0247 - Lyme disease spirochete
>gi|2688151|gb|AAB91499.1| (AE001135) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 201
Score = 81.9 bits (199), Expect = 5e-15
Identities = 70/201 (34%), Positives = 103/201 (50%), Gaps = 26/201 (12%)
Query: 3 LFFITSNPGKVREAAKFFEPLKIEVI-----QLKREYPEIQADSLEEVVKFGIEWLKKEI 57
LFF T+N K+ E + + +I +K + +SL + K E L
Sbjct: 4 LFFATTNENKINEVKNILDIPNLNLIVPQNFNIKETGKTFKENSLLKA-KALFEILNN-- 60
Query: 58 DSPFFIEDSGLFIESLNGFPGVYSSYVYKTIGL----------DGILKLMEGIEDRKAYF 107
+ F EDSGL IE+LN PG+YS Y T L IL LM+ ++RKAYF
Sbjct: 61 NQNVFGEDSGLCIEALNLEPGIYSKR-YDTYKLCKKLSTNEKNQLILDLMKNEKNRKAYF 119
Query: 108 KSVIGYY--DGDVHIFSGVTWGRIA---NEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEK 162
I Y +G + F G+ G+IA N+K+ G FGYD IF+ + ++K +++T EEK
Sbjct: 120 ICNISYISKNGQILNFEGIIKGKIALSLNDKKNYG-FGYDSIFLTKNNKK-LSDLTLEEK 177
Query: 163 NSLSHRGKALKAFFDWLKENI 183
N +SHRG A F +L +++
Sbjct: 178 NKISHRGIAFLKFKKFLLKSL 198
>pir||C81282 hypothetical protein Cj1374c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968808|emb|CAB73801.1|
(AL139078) hypothetical protein Cj1374c [Campylobacter
jejuni]
Length = 200
Score = 81.5 bits (198), Expect = 6e-15
Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 17/189 (8%)
Query: 1 MKLFFITSNPGKV---REAAKFFEPLKIEVIQLKREYPEIQADSLEEVV-----KFGIEW 52
MK+ TSN KV +E K FE + + + E E E + F
Sbjct: 1 MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTFKENALIKARAVFNALD 60
Query: 53 LKKEIDSPFFIEDSGLFIESLNGFPGVYSSYVY----KTIGLDGILKLM--EGIEDRKAY 106
K++ D +DSG+ ++ L G PG+YS+ D ++ M +G + KAY
Sbjct: 61 EKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNRDKLVNEMIKKGFKQSKAY 120
Query: 107 FKSVIGYYDGDVHIFS--GVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNS 164
+ + I G + FS G G++ + ++GE GFGYD +FIP+G +KT A+++ +EKN+
Sbjct: 121 YVAAIAMV-GLMGEFSTHGTMHGKVIDTEKGENGFGYDSLFIPKGFDKTLAQLSVDEKNN 179
Query: 165 LSHRGKALK 173
+SHR KAL+
Sbjct: 180 ISHRFKALE 188
>pir||B72036 yggv family hypothetical protein - Chlamydophila pneumoniae
(strain CWL029) >gi|4377084|gb|AAD18913.1| (AE001659)
YggV family hypothetical protein [Chlamydophila
pneumoniae CWL029]
Length = 206
Score = 80.0 bits (194), Expect = 2e-14
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 1 MKLFFITSNPGKVREAAKFFEPL-KIEVIQLKR----EYPEIQADSLE-EVVKFGIEWLK 54
MK+ +S+ K+RE F + L ++ L + P+ Q DS+ + GI
Sbjct: 1 MKIVIASSHGYKIRETKTFLKRLGDFDIFSLSDFPDYKLPQEQGDSITANALTKGIH-AA 59
Query: 55 KEIDSPFFIEDSGLFIESLNGFPGVYSSY-----VYKTIGLDGILKLMEGIE---DRKAY 106
+ +D+ L + +LNG PG S+ Y +L LM +E DR AY
Sbjct: 60 NHLGCWVIADDTMLRVPALNGLPGPLSANFAGVGAYDKDHRKKLLDLMSSLESLVDRSAY 119
Query: 107 FKSVIGYYDGDVHIFS--GVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNS 164
F+ + + IF G+ G I+++++G GFGYDPIF+ ++TFAE++ + KN
Sbjct: 120 FECCVVLVSPNQEIFKTYGICEGYISHQEKGSSGFGYDPIFVKYDYKQTFAELSEDVKNQ 179
Query: 165 LSHRGKALK 173
+SHR KAL+
Sbjct: 180 VSHRAKALQ 188
>sp|Q10649|YD41_MYCTU HYPOTHETICAL 21.0 KDA PROTEIN RV1341 >gi|7449416|pir||D70739
hypothetical protein Rv1341 - Mycobacterium tuberculosis
(strain H37RV) >gi|1419044|emb|CAA99974.1| (Z75555)
hypothetical protein Rv1341 [Mycobacterium tuberculosis]
Length = 204
Score = 79.6 bits (193), Expect = 2e-14
Identities = 45/117 (38%), Positives = 68/117 (57%), Gaps = 8/117 (6%)
Query: 64 EDSGLFIESLNGFPGVYSSYVYKTIGLDG------ILKLMEGIEDRK-AYFKSVIGYYDG 116
+DSGL + +L G PGV S+ G D + +L + ++R+ A F S G
Sbjct: 75 DDSGLEVAALGGMPGVLSARWSGRYGDDAANTALLLAQLCDVPDERRGAAFVSACALVSG 134
Query: 117 DVHIFSGVTW-GRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKAL 172
+ W G IA E RG+GGFGYDP+F+P G ++T A+++ EK+++SHRG+AL
Sbjct: 135 SGEVVVRGEWPGTIAREPRGDGGFGYDPVFVPYGDDRTAAQLSPAEKDAVSHRGRAL 191
>gb|AAD10059.1| (AF113952) unknown [Campylobacter jejuni]
Length = 200
Score = 79.6 bits (193), Expect = 2e-14
Identities = 60/189 (31%), Positives = 97/189 (50%), Gaps = 17/189 (8%)
Query: 1 MKLFFITSNPGKV---REAAKFFEPLKIEVIQLKREYPEIQADSLEEVV-----KFGIEW 52
MK+ TSN KV +E K FE + + + E E E + F
Sbjct: 1 MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTFKENALIKARAVFNALD 60
Query: 53 LKKEIDSPFFIEDSGLFIESLNGFPGVYSSYVY----KTIGLDGILKLM--EGIEDRKAY 106
K++ D +DSG+ ++ L G PG+YS+ D ++ M +G + KA+
Sbjct: 61 EKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNRDKLVNEMIKKGFKQSKAH 120
Query: 107 FKSVIGYYDGDVHIFS--GVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNS 164
+ + I G + FS G G++ + ++GE GFGYD +FIP+G +KT A+++ +EKN+
Sbjct: 121 YVAAIAMV-GLMGEFSTHGTMHGKVIDTEKGENGFGYDSLFIPKGFDKTLAQLSVDEKNN 179
Query: 165 LSHRGKALK 173
+SHR KAL+
Sbjct: 180 ISHRFKALE 188
>gb|AAF73731.1| (AE002266) HAM1 family protein [Chlamydophila pneumoniae AR39]
>gi|8979148|dbj|BAA98983.1| (AP002547) YggV family
hypothetical protein [Chlamydophila pneumoniae J138]
Length = 206
Score = 79.6 bits (193), Expect = 2e-14
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 1 MKLFFITSNPGKVREAAKFFEPL-KIEVIQLKR----EYPEIQADSLE-EVVKFGIEWLK 54
MK+ +S+ K+RE F + L ++ L + P+ Q DS+ + GI
Sbjct: 1 MKIVIASSHGYKIRETKTFLKRLGDFDIFSLSDFPDYKLPQEQEDSITANALTKGIH-AA 59
Query: 55 KEIDSPFFIEDSGLFIESLNGFPGVYSSY-----VYKTIGLDGILKLMEGIE---DRKAY 106
+ +D+ L + +LNG PG S+ Y +L LM +E DR AY
Sbjct: 60 NHLGCWVIADDTMLRVPALNGLPGPLSANFAGVGAYDKDHRKKLLDLMSSLESLVDRSAY 119
Query: 107 FKSVIGYYDGDVHIFS--GVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNS 164
F+ + + IF G+ G I+++++G GFGYDPIF+ ++TFAE++ + KN
Sbjct: 120 FECCVVLVSPNQEIFKTYGICEGYISHQEKGSSGFGYDPIFVKYDYKQTFAELSEDVKNQ 179
Query: 165 LSHRGKALK 173
+SHR KAL+
Sbjct: 180 VSHRAKALQ 188
>pir||H82320 HAM1 protein VC0456 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654881|gb|AAF93629.1| (AE004132) HAM1
protein [Vibrio cholerae]
Length = 200
Score = 76.1 bits (184), Expect = 3e-13
Identities = 62/201 (30%), Positives = 88/201 (42%), Gaps = 28/201 (13%)
Query: 2 KLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDS-- 59
K+ T N GKVRE A +V+ + E+ ++ E + G +++ I
Sbjct: 3 KIVLATGNQGKVREMADLLSDFGFDVVA-QSEF------NVPEAAETGTTFIENAIIKAR 55
Query: 60 --------PFFIEDSGLFIESLNGFPGVYSSYVYKTIGLDG-----ILKLMEGIED--RK 104
P +DSGL ++ LNG PG+YS+ DG +L M+ + D R
Sbjct: 56 HAAQITGLPTIADDSGLEVDYLNGAPGIYSARYAGEHASDGDNLNKLLMAMQDVPDDQRS 115
Query: 105 AYFKSVI---GYYDGDVHIFSGVTW-GRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTE 160
A F V+ + D I W G+I G GFGYDPIF AE+
Sbjct: 116 ARFHCVLVLMRHADDPTPIVCHGKWEGKILTAPHGSNGFGYDPIFWVPEENCASAELEPV 175
Query: 161 EKNSLSHRGKALKAFFDWLKE 181
K LSHRGKAL+ F ++E
Sbjct: 176 RKKQLSHRGKALQKLFKAIEE 196
>pir||B83597 conserved hypothetical protein PA0387 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946240|gb|AAG03776.1|AE004476_6 (AE004476)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 197
Score = 71.8 bits (173), Expect = 5e-12
Identities = 48/123 (39%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 60 PFFIEDSGLFIESLNGFPGVYSS-YVYKTIGLDGILKLMEGIED-----RKAYFKSVIG- 112
P +DSGL ++ L G PG+YS+ Y KL+E ++D R A F SV+
Sbjct: 66 PALADDSGLAVDFLGGAPGIYSARYADGRGDAANNAKLLEAMKDVPDAERGAQFVSVLAL 125
Query: 113 --YYDGDVHIFSGVTW-GRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRG 169
+ D + I W GRI E RG GFGYDP+F + + AE+ EEKN LSHR
Sbjct: 126 VRHADDPLPILCEGIWEGRILREARGAHGFGYDPLFWVPERDCSSAELAPEEKNRLSHRA 185
Query: 170 KAL 172
+A+
Sbjct: 186 RAM 188
>pir||F71323 conserved hypothetical protein TP0438 - syphilis spirochete
>gi|3322723|gb|AAC65425.1| (AE001221) conserved
hypothetical protein [Treponema pallidum]
Length = 269
Score = 71.4 bits (172), Expect = 7e-12
Identities = 45/124 (36%), Positives = 66/124 (52%), Gaps = 9/124 (7%)
Query: 57 IDSPFFIEDSGLFIESLNGFPGVYSSYV-------YKTIGLDGILKLMEGIEDRKAYFKS 109
+ +P +DSGL +++L+G PGV+S+ T + +L+ M G +DR F
Sbjct: 74 VHAPVLADDSGLCVDALDGDPGVHSARFGAQHGVHTDTARMQLLLERMHGRQDRACSFVC 133
Query: 110 VIGYYDGDVHIF--SGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSH 167
V G V + GV G + E G GFGYDPIF+ +TFA+++ EEKN +SH
Sbjct: 134 VAVLKLGSVPLCVGRGVCRGVLTTEMSGVEGFGYDPIFLLPHLGRTFAQLSIEEKNRVSH 193
Query: 168 RGKA 171
R A
Sbjct: 194 RALA 197
>pir||B71493 hypothetical protein CT606 - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329051|gb|AAC68209.1| (AE001331)
hypothetical protein [Chlamydia trachomatis]
Length = 209
Score = 69.9 bits (168), Expect = 2e-11
Identities = 58/189 (30%), Positives = 87/189 (45%), Gaps = 19/189 (10%)
Query: 1 MKLFFITSNPGKVREAAKFFEPL-KIEVIQLKREYP------EIQADSLEEVVKFGIEWL 53
MK+ +S+ KVRE F + L + ++ L +YP E E ++ G+ +
Sbjct: 1 MKILIASSHGYKVRETKVFLKKLGEFDIFSLV-DYPSYHPPKETGETPEENAIQKGL-FA 58
Query: 54 KKEIDSPFFIEDSGLFIESLNGFPGVYSSYVYKTIGLDGI--------LKLMEGIEDRKA 105
+ +DS L I +L G PG S+ D ++L+E DR A
Sbjct: 59 AQTFRCWTIADDSMLIIPALGGLPGKLSASFAGEQANDKDHRKKLLENMRLLENTIDRSA 118
Query: 106 YFKSVIGYYDGDVHIFSGVTW--GRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKN 163
YF+ + IF G IA E+RG GFGYDP+F+ ++T+AE+ KN
Sbjct: 119 YFECCVALISPFGKIFKAHASCEGTIAFEERGSSGFGYDPLFVKHDYKQTYAELPEAIKN 178
Query: 164 SLSHRGKAL 172
+SHR KAL
Sbjct: 179 QVSHRAKAL 187
>pir||E81930 hypothetical protein NMA0849 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379565|emb|CAB84130.1|
(AL162754) hypothetical protein NMA0849 [Neisseria
meningitidis Z2491]
Length = 199
Score = 68.3 bits (164), Expect = 6e-11
Identities = 59/185 (31%), Positives = 82/185 (43%), Gaps = 15/185 (8%)
Query: 2 KLFFITSNPGKVREAAKFFEPLKIEVIQLKR----EYPEIQADSLEEVVKFGIEWLKKEI 57
K+ + N GK++E FEP I V+ E PE + +E +
Sbjct: 7 KIVLASGNAGKLKEFGNLFEPYGITVLPQSEFSIPECPEPYSTFVENALAKA-RHAAGHS 65
Query: 58 DSPFFIEDSGLFIESLNGFPGVYSS-YVYKTIGLDGI--LKL---MEGIEDRKAYFKSVI 111
P +DSG+ +LNG PG++S+ Y D LKL + G D+ + V+
Sbjct: 66 GLPALADDSGICAAALNGAPGIHSARYAGSNPKSDTANNLKLAAELAGKADKSCCYVCVL 125
Query: 112 GYY----DGDVHIFSGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSH 167
+ D I GV G+ GE GFGYDP F G KT AE+ +E KN SH
Sbjct: 126 VFVRHKDDPRPIIAEGVWHGQWNGVPAGENGFGYDPYFYLPGHGKTAAELDSEVKNRESH 185
Query: 168 RGKAL 172
R +AL
Sbjct: 186 RAQAL 190
>pir||T27537 hypothetical protein ZC395.7 - Caenorhabditis elegans
Length = 222
Score = 68.3 bits (164), Expect = 6e-11
Identities = 47/181 (25%), Positives = 78/181 (42%), Gaps = 29/181 (16%)
Query: 2 KLFFITSNPGKVREAAKFFEPLKIEVIQLKREYPEIQADSLEEVVKFGIEWLKKEIDSPF 61
K+ F+T N K+ E + EV + + E Q + E + + + + P
Sbjct: 71 KINFVTGNVKKLEEVKAILK--NFEVSNVDVDLDEFQGEP-EFIAERKCREAVEAVKGPV 127
Query: 62 FIEDSGLFIESLNGFPGVYSSYVYKTIGLDGILKLMEGIEDRKAYFKSVIGYYDGDVHIF 121
+ED+ L ++ G PG Y + K + +G+ H
Sbjct: 128 LVEDTSLCFNAMGGLPGPYIKWFLKNLKPEGL-------------------------HNM 162
Query: 122 SGVTWGRIANEKRGEGGFGYDPIFIPEGSEKTFAEMTTEEKNSLSHRGKALKAFFDWLKE 181
G G+I RG+ FG+DP F P+G ++TF EM + KN +SHR KAL+ ++ +
Sbjct: 163 LGKCPGQIV-APRGDTAFGWDPCFQPDGFKETFGEMDKDVKNEISHRAKALELLKEYFQN 221
Query: 182 N 182
N
Sbjct: 222 N 222
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.142 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73688195
Number of Sequences: 2977
Number of extensions: 3289034
Number of successful extensions: 7380
Number of sequences better than 1.0e-10: 37
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7306
Number of HSP's gapped (non-prelim): 37
length of query: 183
length of database: 189,106,746
effective HSP length: 52
effective length of query: 131
effective length of database: 157,985,422
effective search space: 20696090282
effective search space used: 20696090282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)