BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1236 (PAB1236) DE:TRANSCRIPTIONAL REGULATOR
(150 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi ... 293 5e-79
pir||B71206 probable leucine-responsive regulatory protein - Pyr... 280 5e-75
emb|CAC11747.1| (AL445064) transcription regulator related prote... 139 2e-32
gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (... 91 6e-18
pir||A75106 transcription regulatory protein, asnc family PAB193... 87 1e-16
pir||F75201 transcription regulatory protein PAB2257 - Pyrococcu... 87 1e-16
pir||E71028 probable transcription regulator - Pyrococcus horiko... 86 2e-16
sp|Q44333|PUTR_AGRTU PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIV... 85 3e-16
pir||B71235 probable transcription regulator - Pyrococcus horiko... 85 3e-16
gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobac... 83 2e-15
sp|O07920|AZLB_BACSU TRANSCRIPTIONAL REGULATOR AZLB >gi|7444109|... 82 4e-15
gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus] 81 7e-15
sp|Q52710|PUTR_RHOCA PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIV... 80 9e-15
dbj|BAA20552.1| (D89015) Lrp-family transcriptional regulators [... 80 2e-14
pir||E71176 probable transcription regulator - Pyrococcus horiko... 79 2e-14
pir||B82142 leucine-responsive regulatory protein VC1904 [import... 77 1e-13
pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyro... 76 1e-13
pir||D82983 leucine-responsive regulatory protein PA5308 [import... 76 1e-13
gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [B... 76 2e-13
pir||T46972 transcription regulator lrpA [validated] - Pyrococcu... 75 3e-13
gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus s... 75 4e-13
emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulat... 75 4e-13
pir||T45215 transcription regulator lrp [validated] - Sulfolobus... 74 9e-13
emb|CAB59580.1| (AL132662) putative transcriptional regulator [S... 74 9e-13
sp|P37424|LRP_KLEPN LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|21... 73 1e-12
sp|P19494|LRP_ECOLI LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|73... 73 2e-12
sp|P37425|LRP_SERMA LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|21... 73 2e-12
sp|O87635|LRP_KLEAE LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|36... 73 2e-12
sp|P37403|LRP_SALTY LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|21... 73 2e-12
pir||H71037 probable transcription regulator - Pyrococcus horiko... 72 4e-12
pir||A81059 leucine-responsive regulatory protein NMB1650 [impor... 72 4e-12
emb|CAA71443.1| (Y10417) lrp [Proteus mirabilis] 72 4e-12
pir||A81818 AsnC-family transcription regulator NMA1905 [importe... 71 5e-12
gi|11498192 transcriptional regulatory protein, AsnC family [Arc... 71 6e-12
pir||T36701 probable transcription regulator - Streptomyces coel... 70 1e-11
pir||A83392 probable transcription regulator PA2028 [imported] -... 69 2e-11
pir||F70010 transcription regulator Lrp/AsnC family homolog yugG... 69 3e-11
pir||E75176 transcription regulatory protein, asnc Family PAB039... 69 3e-11
emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional ... 69 3e-11
gi|11498085 transcriptional regulatory protein, AsnC family [Arc... 68 4e-11
gb|AAD54636.1|AF081588_3 (AF081588) Zrp [Zymomonas mobilis] >gi|... 67 9e-11
emb|CAC12110.1| (AL445066) transcription regulator LrpA related ... 67 9e-11
>pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi (strain Orsay)
>gi|5459110|emb|CAB50596.1| (AJ248288) TRANSCRIPTIONAL
REGULATOR [Pyrococcus abyssi]
Length = 150
Score = 293 bits (743), Expect = 5e-79
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MAEILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNY 60
MAEILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNY
Sbjct: 1 MAEILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNY 60
Query: 61 KKLNLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEV 120
KKLNLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEV
Sbjct: 61 KKLNLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEV 120
Query: 121 GRIVIDKLREIRGVGQTVTMVSFDTVKEEI 150
GRIVIDKLREIRGVGQTVTMVSFDTVKEEI
Sbjct: 121 GRIVIDKLREIRGVGQTVTMVSFDTVKEEI 150
>pir||B71206 probable leucine-responsive regulatory protein - Pyrococcus
horikoshii >gi|3258358|dbj|BAA31041.1| (AP000007) 150aa
long hypothetical leucine-responsive regulatory protein
[Pyrococcus horikoshii]
Length = 150
Score = 280 bits (709), Expect = 5e-75
Identities = 141/150 (94%), Positives = 147/150 (98%)
Query: 1 MAEILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNY 60
M EILDKVDRRLLEELK NARENIATLSKKLGIPRTTVHYRIKRLVEEGIIE+FTIKPNY
Sbjct: 1 MPEILDKVDRRLLEELKNNARENIATLSKKLGIPRTTVHYRIKRLVEEGIIEKFTIKPNY 60
Query: 61 KKLNLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEV 120
KKLNLGTTAFILIRYDPDSGLTQR+VAEQIA+IPGVYEVH++AGEWDLLLKVRASNAEE+
Sbjct: 61 KKLNLGTTAFILIRYDPDSGLTQREVAEQIARIPGVYEVHLVAGEWDLLLKVRASNAEEI 120
Query: 121 GRIVIDKLREIRGVGQTVTMVSFDTVKEEI 150
GRIVIDKLREIRGVGQTVTMVSF TVKEEI
Sbjct: 121 GRIVIDKLREIRGVGQTVTMVSFVTVKEEI 150
>emb|CAC11747.1| (AL445064) transcription regulator related protein [Thermoplasma
acidophilum]
Length = 143
Score = 139 bits (346), Expect = 2e-32
Identities = 69/143 (48%), Positives = 99/143 (68%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
+D+ D ++L L NAR+ I+ +S+ L IPR T++ R++ +++ GII++FTI P+YK L
Sbjct: 1 MDEKDIQILNYLMENARDKISDMSRVLDIPRVTIYERMQNMIKSGIIKKFTIVPDYKALG 60
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
+ AFILI Y P GL+QR++A +IA V V+IIAGEWDLL+KVR S+ E VG V
Sbjct: 61 VPVVAFILIAYTPKDGLSQRELAAKIANFKDVENVYIIAGEWDLLIKVRESSTEAVGNFV 120
Query: 125 IDKLREIRGVGQTVTMVSFDTVK 147
+DKLRE+ GV + T+ F VK
Sbjct: 121 LDKLREMPGVERAQTITVFSEVK 143
>gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (asnC) [Sulfolobus
solfataricus]
Length = 153
Score = 90.9 bits (222), Expect = 6e-18
Identities = 47/145 (32%), Positives = 88/145 (60%), Gaps = 4/145 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD +D+++L L+ ++R + L+K L + T++ RIKRL E G+I+ F + ++ K+
Sbjct: 8 LDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTEIDFDKIG 67
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
L AFILI+ DP + +Q+ ++ +YE++ + GE+ +LKVR E++ + V
Sbjct: 68 LSVVAFILIKADPKK---YDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDLAK-V 123
Query: 125 IDKLREIRGVGQTVTMVSFDTVKEE 149
+DK+ + GV T TM+ ++K++
Sbjct: 124 LDKIGNMDGVTSTYTMLVLRSIKDK 148
>pir||A75106 transcription regulatory protein, asnc family PAB1938 - Pyrococcus
abyssi (strain Orsay) >gi|5458073|emb|CAB49562.1|
(AJ248285) transcriptional regulatory protein, AsnC
family [Pyrococcus abyssi]
Length = 151
Score = 86.6 bits (211), Expect = 1e-16
Identities = 49/144 (34%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DRR+++ L+ + + + +SK G+ +T+H RIK+L E G+I +FT N + L
Sbjct: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
AFILI+ +VA + K + EV+ G++D+++K+R N+EE+
Sbjct: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF- 120
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+D + I GV T TM+ T KE
Sbjct: 121 LDVIGSIPGVEGTHTMIVLKTHKE 144
>pir||F75201 transcription regulatory protein PAB2257 - Pyrococcus abyssi
(strain Orsay) >gi|5457570|emb|CAB49061.1| (AJ248283)
transcriptional regulatory protein [Pyrococcus abyssi]
Length = 158
Score = 86.6 bits (211), Expect = 1e-16
Identities = 44/137 (32%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DR +L L+ + R + + +S+++ +P +TV R+ RL+ EG+I +F N K
Sbjct: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
AFI I +P RQV E++AK+P V + I+ G D+ ++V + +E+ R +
Sbjct: 72 YEIVAFIAIDAEP---AKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
Query: 125 IDKLREIRGVGQTVTMV 141
++K+ +I G+ T T +
Sbjct: 129 LEKMAKIDGIRSTETSI 145
>pir||E71028 probable transcription regulator - Pyrococcus horikoshii
>gi|3257946|dbj|BAA30629.1| (AP000006) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 85.8 bits (209), Expect = 2e-16
Identities = 46/144 (31%), Positives = 85/144 (58%), Gaps = 4/144 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++D+++++ L+ + + + +SK G+ +T+H RI++L E G+I++FT + + L
Sbjct: 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALG 64
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
AFIL++ +VA +AK P + EV+ G++D+++K+R N+EE+
Sbjct: 65 YSMLAFILVKVKAGK---YSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNF- 120
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+D + I GV T TM+ T KE
Sbjct: 121 LDLIGSIPGVEGTHTMIVLKTHKE 144
>sp|Q44333|PUTR_AGRTU PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIVATOR
>gi|1262197|gb|AAC43979.1| (U39263) Prp [Agrobacterium
tumefaciens] >gi|1588857|prf||2209368D prp gene
[Agrobacterium tumefaciens]
Length = 156
Score = 85.4 bits (208), Expect = 3e-16
Identities = 50/144 (34%), Positives = 77/144 (52%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD D ++LE L + R ++ LSK++G+ +T R+KRLV+EG I F N +KL
Sbjct: 10 LDHFDLKILEALSEDGRMSVLQLSKRVGLSKTPCQTRLKRLVDEGYILGFRAVLNPQKLG 69
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
+ AF ++ + + KI V E H+IAG +D LLKVR S+ + R++
Sbjct: 70 VDHIAFAEVKLSDTREKALEEFNTAVRKIKEVEECHMIAGAFDYLLKVRTSDIRKYRRVL 129
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+K+ + V T T V +VKE
Sbjct: 130 GEKISSLPSVSNTSTFVVMQSVKE 153
>pir||B71235 probable transcription regulator - Pyrococcus horikoshii
>gi|3256526|dbj|BAA29209.1| (AP000001) 158aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 158
Score = 85.4 bits (208), Expect = 3e-16
Identities = 43/137 (31%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DR +L L+ + R + + +S+++ +P +TV R+ RLV+EG+I +F N K
Sbjct: 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRKFAALINPFKAG 71
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
AFI + +P +QV E++AK P V + I+ G D+ ++V + +E+ R +
Sbjct: 72 YEIVAFIAVDAEP---AKVKQVVEELAKFPEVDVLGIVTGAHDIFMQVTVKDLQELERFI 128
Query: 125 IDKLREIRGVGQTVTMV 141
++K+ +I G+ T T +
Sbjct: 129 LEKMAKIDGIKSTETSI 145
>gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobacterium sp. NRC-1]
Length = 149
Score = 82.7 bits (201), Expect = 2e-15
Identities = 41/144 (28%), Positives = 84/144 (57%), Gaps = 3/144 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
+D DR +L L+ +AR+ + +++++ + TVH R+ RL E G+I + + K +
Sbjct: 3 VDDTDREILRALQADARKPFSEIAREIDMSSATVHDRVSRLEEAGVIRGYHADVDPKAVG 62
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
LGTTAF+ +R + + + +++ I GV EV++ GEWD++L++ A + + + ++
Sbjct: 63 LGTTAFVGLRVEQG---REDETLDRLTGIEGVREVNLTTGEWDVILRLVAEDTDHLRALM 119
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+++ ++ G ++ TMV T E
Sbjct: 120 FEEIADMDGFARSQTMVVLGTEYE 143
>sp|O07920|AZLB_BACSU TRANSCRIPTIONAL REGULATOR AZLB >gi|7444109|pir||F69592 azlBCD
operon transcription repressor azlB - Bacillus subtilis
>gi|1926280|emb|CAA71939.1| (Y11043) transcriptional
regulator [Bacillus subtilis] >gi|1934649|gb|AAB80900.1|
(U93876) regulatory protein YrdG [Bacillus subtilis]
>gi|2635117|emb|CAB14613.1| (Z99117) transcriptional
regulator (Lrp/AsnC family) [Bacillus subtilis]
Length = 157
Score = 81.5 bits (198), Expect = 4e-15
Identities = 49/150 (32%), Positives = 75/150 (49%)
Query: 1 MAEILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNY 60
M +LD+ D+ +L +L+ +A + LSKK+G+ + R K LVE GII++FT +
Sbjct: 1 MGIMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDE 60
Query: 61 KKLNLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEV 120
KKL + TA LI P + T E I K P V E + + G D +LK+ A + E
Sbjct: 61 KKLGIEVTALALINLSPLNRETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESY 120
Query: 121 GRIVIDKLREIRGVGQTVTMVSFDTVKEEI 150
+ID L + + T + T K +
Sbjct: 121 RNFIIDSLMQNPAISGVDTSIVMSTEKRTV 150
>gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus]
Length = 142
Score = 80.8 bits (196), Expect = 7e-15
Identities = 47/141 (33%), Positives = 85/141 (59%), Gaps = 6/141 (4%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
+D+ D ++LE LK NAR ++K+L + + RI++L+ +GII+RFTI+ +L
Sbjct: 6 IDESDLKILEILKKNARTPYTLIAKELKVSEAAIRKRIEKLIRQGIIKRFTIE---YELE 62
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
A ++++ P + +++++IAKIPGV V+ G++D+L+ VR +N + R
Sbjct: 63 NEIRAIVMVQSTPQ--IPTPEISKKIAKIPGVEVVYETTGDYDILVIVRGTNITSINR-T 119
Query: 125 IDKLREIRGVGQTVTMVSFDT 145
ID++R I+GV T + + T
Sbjct: 120 IDEIRSIQGVVGTNSTIILRT 140
>sp|Q52710|PUTR_RHOCA PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIVATOR
>gi|7469215|pir||T28434 transcription regulator homolog
putR - Rhodobacter capsulatus
>gi|1122428|emb|CAA55141.1| (X78346) proline
dehydrogenase transcriptional activator [Rhodobacter
capsulatus]
Length = 154
Score = 80.4 bits (195), Expect = 9e-15
Identities = 47/149 (31%), Positives = 82/149 (54%)
Query: 1 MAEILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNY 60
M +++D DRR+L EL NAR + L++K+G+ +T V RI+ + E G+I + +
Sbjct: 1 MTDLIDATDRRILHELCANARIPVTELARKVGLSKTPVAARIRAMEEMGLITGYRAMLSP 60
Query: 61 KKLNLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEV 120
+L L ++ +R + Q + +IP V E ++IAG +D LLKVR+ + E
Sbjct: 61 IRLGLIHVTYVEVRLNDTRQKALEQFNAAVREIPEVEECYMIAGGFDYLLKVRSHDIAEY 120
Query: 121 GRIVIDKLREIRGVGQTVTMVSFDTVKEE 149
+I+ +KL + V T + V+ + V E+
Sbjct: 121 RKIMGEKLSALPHVAATSSYVAMEAVVEQ 149
>dbj|BAA20552.1| (D89015) Lrp-family transcriptional regulators [Pseudomonas putida]
Length = 159
Score = 79.6 bits (193), Expect = 2e-14
Identities = 47/149 (31%), Positives = 74/149 (49%)
Query: 1 MAEILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNY 60
M +D+ DR LL L+ NAR +A L+ + + + R+K L E G I + +
Sbjct: 1 MPSAIDRTDRALLAALQDNARLTVAELADSVALTTSPCWRRVKLLEESGYITGYQAILSP 60
Query: 61 KKLNLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEV 120
K L G TAF+ I D S R +++ IP + H I+G +D LL++ A + E
Sbjct: 61 KALGFGVTAFVSIMMDSHSKEMARAFEQRLMDIPEIVACHNISGRYDFLLEILARDLESF 120
Query: 121 GRIVIDKLREIRGVGQTVTMVSFDTVKEE 149
G + L+ + GV + + SF VKE+
Sbjct: 121 GEFTREVLQRLPGVKEIYSSFSFKAVKEK 149
>pir||E71176 probable transcription regulator - Pyrococcus horikoshii
>gi|3258121|dbj|BAA30804.1| (AP000007) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 79.2 bits (192), Expect = 2e-14
Identities = 50/145 (34%), Positives = 83/145 (56%), Gaps = 4/145 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD +DR++LE L ++R + ++K L + T++ RIK+L + G+I+ FT+K NY+ +
Sbjct: 6 LDALDRKILEILLKDSRTSYREIAKDLNVAVGTIYNRIKKLEDSGVIQAFTVKLNYESIG 65
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
TA I I+ G R++ IAK V V+ + GE+D+++ + N E++ R V
Sbjct: 66 YDLTAIIGIK---AQGKKIREIERIIAKDKRVTCVYDVTGEYDIIVIAKFRNREDMNRFV 122
Query: 125 IDKLREIRGVGQTVTMVSFDTVKEE 149
L I GV +T T V + VKE+
Sbjct: 123 KGVL-SIDGVEKTNTHVVLEIVKED 146
>pir||B82142 leucine-responsive regulatory protein VC1904 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656438|gb|AAF95052.1| (AE004266) leucine-responsive
regulatory protein [Vibrio cholerae]
Length = 164
Score = 76.9 bits (186), Expect = 1e-13
Identities = 44/144 (30%), Positives = 76/144 (52%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DR +L EL+ + R + LSK++G+ T R++RL +G I +T N + L+
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFITGYTALLNPQYLD 71
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ I + + Q + K+ + E H+++G++D LLK R S+ R++
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNAAVQKLDDIQECHLVSGDFDYLLKTRVSDMGAYRRLL 131
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
D L + GV T T V + VK+
Sbjct: 132 GDTLLRLPGVNDTRTYVVMEEVKQ 155
>pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyrococcus abyssi
(strain Orsay) >gi|5457914|emb|CAB49404.1| (AJ248284)
LEUCINE-RESPONSIVE-REGULATORY PROTEIN [Pyrococcus
abyssi]
Length = 147
Score = 76.5 bits (185), Expect = 1e-13
Identities = 47/146 (32%), Positives = 85/146 (58%), Gaps = 4/146 (2%)
Query: 4 ILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKL 63
+LD++D++++ L ++R + ++K+L + T++ RIK+L E G+I+ FT+K NY+ +
Sbjct: 1 MLDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENI 60
Query: 64 NLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRI 123
TA + I+ G R++ IAK V V+ + GE+D+++ + N E++ R
Sbjct: 61 GYDLTAIMGIK---AQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRF 117
Query: 124 VIDKLREIRGVGQTVTMVSFDTVKEE 149
V L I GV +T T V + VKE+
Sbjct: 118 VKGVL-SIDGVEKTNTHVVLEVVKED 142
>pir||D82983 leucine-responsive regulatory protein PA5308 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9951624|gb|AAG08693.1|AE004943_9 (AE004943)
leucine-responsive regulatory protein [Pseudomonas
aeruginosa]
Length = 162
Score = 76.5 bits (185), Expect = 1e-13
Identities = 42/146 (28%), Positives = 76/146 (51%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LDK+DR +L L+ R + L +++G+ T R++RL EG+I + + N + L
Sbjct: 11 LDKIDRNILRILQEEGRISFTELGERVGLSTTPCTERVRRLEREGLIMGYHARLNPQHLK 70
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ I D SG T + + K+P V E H+++G +D L+K R S +++
Sbjct: 71 ASLLVFVEISLDYKSGDTFEEFRRAVLKLPHVLECHLVSGHFDYLVKARISEMASYRKLL 130
Query: 125 IDKLREIRGVGQTVTMVSFDTVKEEI 150
D L ++ V ++ + + + VKE +
Sbjct: 131 GDILLKLPHVRESKSYIVMEEVKESL 156
>gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [Bradyrhizobium
japonicum]
Length = 153
Score = 75.7 bits (183), Expect = 2e-13
Identities = 42/145 (28%), Positives = 77/145 (52%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DRR+L L+ + R L++++G+ T++ R+KRL EG +E + + N +L
Sbjct: 3 LDRLDRRILSILQEDGRIANVELAERIGLSPTSIGERLKRLQREGFVEGYGARLNPHRLG 62
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
LG F+ + D + + A + P V E H++AG +D L+K R ++ R +
Sbjct: 63 LGLLVFVEVLLDKTTPDNFERFARAVKLAPEVLECHMVAGGFDYLVKARLADMTAYRRFL 122
Query: 125 IDKLREIRGVGQTVTMVSFDTVKEE 149
+ L + GV +T T + +K +
Sbjct: 123 GETLLSMPGVRETRTYAVMEEIKRD 147
>pir||T46972 transcription regulator lrpA [validated] - Pyrococcus furiosus
>gi|4416541|gb|AAD20389.1| (M97860) transcriptional
regulator LrpA [Pyrococcus furiosus]
Length = 141
Score = 75.3 bits (182), Expect = 3e-13
Identities = 44/144 (30%), Positives = 81/144 (55%), Gaps = 3/144 (2%)
Query: 4 ILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKL 63
++D+ D+ +LE L+ +AR ++KKLGI T V R+K L E+GIIE +TIK N KKL
Sbjct: 1 MIDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
Query: 64 NLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRI 123
+ P+ +VAE++ + V E+++ +G+ ++ + A + E++ I
Sbjct: 61 GYSLVTITGVDTKPEKLF---EVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEI 117
Query: 124 VIDKLREIRGVGQTVTMVSFDTVK 147
+ +K+ +I GV + + + +K
Sbjct: 118 ISNKIGKIEGVTKVCPAIILEKLK 141
>gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus solfataricus]
Length = 157
Score = 74.9 bits (181), Expect = 4e-13
Identities = 43/145 (29%), Positives = 81/145 (55%), Gaps = 4/145 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD +DRRLL EL +AR ++ L++++ + T+H R+ R+V+EG+I+ F +Y KL
Sbjct: 11 LDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLG 70
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
T I+ + D G + ++IA V V+ + GE+D+++ + + EE+ +
Sbjct: 71 FALTGIIMAKVD---GKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFL 127
Query: 125 IDKLREIRGVGQTVTMVSFDTVKEE 149
L+ + + +T T + + VKE+
Sbjct: 128 KQLLKNPK-IERTYTSIVLNVVKED 151
>emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulatory protein)
[Sulfolobus solfataricus]
Length = 157
Score = 74.9 bits (181), Expect = 4e-13
Identities = 43/145 (29%), Positives = 81/145 (55%), Gaps = 4/145 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD +DRRLL EL +AR ++ L++++ + T+H R+ R+V+EG+I+ F +Y KL
Sbjct: 11 LDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLG 70
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
T I+ + D G + ++IA V V+ + GE+D+++ + + EE+ +
Sbjct: 71 FALTGIIMAKVD---GKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFL 127
Query: 125 IDKLREIRGVGQTVTMVSFDTVKEE 149
L+ + + +T T + + VKE+
Sbjct: 128 KQLLKNPK-IERTYTSIVLNVVKED 151
>pir||T45215 transcription regulator lrp [validated] - Sulfolobus acidocaldarius
>gi|2760520|emb|CAA73351.1| (Y12821)
leucine-responsive-regulatory protein [Sulfolobus
acidocaldarius]
Length = 155
Score = 73.7 bits (178), Expect = 9e-13
Identities = 38/145 (26%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
+D +D++LL EL ++R ++ L++++ + T+H R+ RLV+EG+++ FT +Y KL
Sbjct: 9 IDAIDKKLLIELLKDSRISLRRLAEEMNVSPATLHNRLMRLVQEGVVKGFTALIDYSKLG 68
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
T+ ++I+ D G + ++++ + V V+ + GE+D++L + + E++ +
Sbjct: 69 YPVTSILMIKVD---GKHILEFEKEVSNLDNVVAVYDVVGEYDVMLIAKFRSIEDLDTFI 125
Query: 125 IDKLREIRGVGQTVTMVSFDTVKEE 149
L+ + + +T T + + VKE+
Sbjct: 126 KSLLKNPK-IERTYTSIVLNVVKED 149
>emb|CAB59580.1| (AL132662) putative transcriptional regulator [Streptomyces
coelicolor A3(2)]
Length = 145
Score = 73.7 bits (178), Expect = 9e-13
Identities = 46/144 (31%), Positives = 77/144 (52%), Gaps = 5/144 (3%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
+D++DRRL+ L+ +A A L ++G+ H R+++L E+ +I T+ + + L+
Sbjct: 1 MDEIDRRLIALLQQDATRPYAALGGEVGLSAGAAHERVRKLREQRVIRSTTVDVDPEALD 60
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
G AF+L+ DS AE A +P + E H+IAG +L+KVR + E + + V
Sbjct: 61 RGVLAFVLV----DSTAWMGDRAEDFAAVPEIQEAHVIAGSAAVLVKVRTATTERL-QDV 115
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+ +L I GV T V +T E
Sbjct: 116 LRRLYAIDGVSGTQATVVLETFFE 139
>sp|P37424|LRP_KLEPN LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|2120007|pir||S59992
transcription regulator lrp, leucine-responsive -
Klebsiella pneumoniae >gi|407918|gb|AAA75465.1| (U02274)
Lrp [Klebsiella pneumoniae]
Length = 164
Score = 73.4 bits (177), Expect = 1e-12
Identities = 41/144 (28%), Positives = 75/144 (51%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DR +L EL+ + R + LSK++G+ T R++RL +G I+ +T N L+
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ I + + Q + K+ + E H+++G++D LLK R + +++
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNSAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+ L + GV T T V + VK+
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQ 155
>sp|P19494|LRP_ECOLI LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|73065|pir||RGECLR
leucine-responsive transcription regulator lrp
[validated] - Escherichia coli >gi|146665|gb|AAA24089.1|
(M35869) leucine-responsive-regulatory protein (Lrp)
[Escherichia coli] >gi|216586|dbj|BAA01880.1| (D11105)
leucine responsive regulatory protein [Escherichia coli]
>gi|407914|gb|AAA75439.1| (U02272) Lrp [Enterobacter
aerogenes] >gi|1651411|dbj|BAA35614.1| (D90726)
Leucine-responsive regulatory protein. [Escherichia
coli] >gi|1651417|dbj|BAA35621.1| (D90727)
Leucine-responsive regulatory protein. [Escherichia
coli] >gi|1787116|gb|AAC73975.1| (AE000191) regulator
for leucine (or lrp) regulon and high-affinity
branched-chain amino acid transport system [Escherichia
coli K12]
Length = 164
Score = 73.0 bits (176), Expect = 2e-12
Identities = 41/144 (28%), Positives = 75/144 (51%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DR +L EL+ + R + LSK++G+ T R++RL +G I+ +T N L+
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ I + + Q + K+ + E H+++G++D LLK R + +++
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+ L + GV T T V + VK+
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQ 155
>sp|P37425|LRP_SERMA LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|2120005|pir||S59991
transcription regulator lrp, leucine-responsive -
Serratia marcescens >gi|407921|gb|AAA75466.1| (U02276)
Lrp [Serratia marcescens]
Length = 164
Score = 73.0 bits (176), Expect = 2e-12
Identities = 41/144 (28%), Positives = 75/144 (51%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DR +L EL+ + R + LSK++G+ T R++RL +G I+ +T N L+
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ I + + Q + K+ + E H+++G++D LLK R + +++
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+ L + GV T T V + VK+
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQ 155
>sp|O87635|LRP_KLEAE LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|3603469|gb|AAD12584.1|
(AF090144) leucine-responsive regulatory protein
[Klebsiella aerogenes]
Length = 164
Score = 73.0 bits (176), Expect = 2e-12
Identities = 41/144 (28%), Positives = 75/144 (51%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DR +L EL+ + R + LSK++G+ T R++RL +G I+ +T N L+
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ I + + Q + K+ + E H+++G++D LLK R + +++
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+ L + GV T T V + VK+
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQ 155
>sp|P37403|LRP_SALTY LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|2120006|pir||S59993
transcription regulator lrp, leucine-responsive -
Salmonella typhimurium >gi|407916|gb|AAA75467.1|
(U02273) Lrp [Salmonella typhimurium]
Length = 164
Score = 72.6 bits (175), Expect = 2e-12
Identities = 41/144 (28%), Positives = 74/144 (50%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DR +L EL+ + R + LSK++G+ T R++RL +G I+ +T N L+
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ I + Q + K+ + E H+++G++D LLK R + +++
Sbjct: 72 ASLLVFVEITLNRGGPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+ L + GV T T V + VK+
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQ 155
>pir||H71037 probable transcription regulator - Pyrococcus horikoshii
>gi|3258021|dbj|BAA30704.1| (AP000006) 141aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 141
Score = 71.8 bits (173), Expect = 4e-12
Identities = 43/144 (29%), Positives = 80/144 (54%), Gaps = 3/144 (2%)
Query: 4 ILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKL 63
++D+ D+ +LE L +AR ++KKLGI T V R+K L E+GIIE +TI+ N KKL
Sbjct: 1 MIDERDKIILEILSKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIRINPKKL 60
Query: 64 NLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRI 123
+ P+ +VAE++ + V E+++ +G+ ++ + A + E++ I
Sbjct: 61 GYSLVTITGVDTRPEKLF---EVAEKLKEFEFVRELYLSSGDHMIMAVIWARDGEDLADI 117
Query: 124 VIDKLREIRGVGQTVTMVSFDTVK 147
+ +K+ +I GV + + + +K
Sbjct: 118 ISNKIGKIDGVTKVCPAIILEKLK 141
>pir||A81059 leucine-responsive regulatory protein NMB1650 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226901|gb|AAF41999.1| (AE002515) leucine-responsive
regulatory protein [Neisseria meningitidis MC58]
Length = 154
Score = 71.8 bits (173), Expect = 4e-12
Identities = 42/144 (29%), Positives = 76/144 (52%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LDK+D R+L+ L+ NAR + L++K+G+ T V R++RL E I + N L
Sbjct: 4 LDKIDFRILKILQQNARIPMTELAEKVGLSTTPVTERVRRLEREHYISGYHAHLNPHLLG 63
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ ++ SG +++ KIP + E H+++GE+D L+KVR + ++
Sbjct: 64 KPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVSGEYDYLIKVRLPDMSAYRDML 123
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+ L ++ ++ + V + VKE
Sbjct: 124 GNILLQLPAASESRSYVVMEEVKE 147
>emb|CAA71443.1| (Y10417) lrp [Proteus mirabilis]
Length = 164
Score = 71.8 bits (173), Expect = 4e-12
Identities = 41/144 (28%), Positives = 74/144 (50%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD++DR +L EL+ + R + LSK++G+ T R++RL +G I +T N L+
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFISGYTALLNPHYLD 71
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ I + + Q + K+ + E H+++G++D LLK R + +++
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNMAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+ L + GV T T V + VK+
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQ 155
>pir||A81818 AsnC-family transcription regulator NMA1905 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380539|emb|CAB85126.1| (AL162757) AsnC-family
transcriptional regulator [Neisseria meningitidis Z2491]
Length = 154
Score = 71.4 bits (172), Expect = 5e-12
Identities = 42/144 (29%), Positives = 76/144 (52%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LDK+D R+L+ L+ NAR + L++K+G+ T V R++RL E I + N L
Sbjct: 4 LDKIDFRILKILQQNARIPMMELAEKVGLSTTPVTERVRRLEREHYISGYHAHLNPHLLG 63
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
F+ ++ SG +++ KIP + E H+++GE+D L+KVR + ++
Sbjct: 64 KPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVSGEYDYLIKVRLPDMSAYRDML 123
Query: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
+ L ++ ++ + V + VKE
Sbjct: 124 GNILLQLPAASESRSYVVMEEVKE 147
>gi|11498192 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444088|pir||H69322 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2650037|gb|AAB90654.1| (AE001064) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 145
Score = 71.0 bits (171), Expect = 6e-12
Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
+D+ D +L EL ++R+ ++ L++ L + +++H R+K+L +EG+IER+T N +
Sbjct: 1 MDEKDMLILSELVKDSRKTLSELAEMLDMSVSSIHKRVKKLEKEGVIERYTAVINPDVFD 60
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
TAF+LI S +V I + V EV+ G ++++ KVR+S+ +++G I
Sbjct: 61 T-VTAFLLI-----SAENPEKVFNNIKAMDNVVEVYKALGNFNMIAKVRSSDLDKIGEIT 114
Query: 125 IDKLREIRGVGQTVTMVSFDTVKEEI 150
K+ + GV +V+ +KEEI
Sbjct: 115 -SKISAMEGVMMVECIVTTKRLKEEI 139
>pir||T36701 probable transcription regulator - Streptomyces coelicolor
>gi|5102784|emb|CAB45199.1| (AL079308) putative
transcriptional regulator [Streptomyces coelicolor
A3(2)]
Length = 135
Score = 70.2 bits (169), Expect = 1e-11
Identities = 36/130 (27%), Positives = 77/130 (58%), Gaps = 3/130 (2%)
Query: 16 LKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLNLGTTAFILIRY 75
L+ + R +I ++++++ + R + RI RLVE+G+I F + ++++ GT+A+I ++
Sbjct: 2 LQADGRASIRSVAERVHVSRANAYARINRLVEDGVIRGFGARVDHERAGHGTSAYITLKI 61
Query: 76 DPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIVIDKLREIRGVG 135
+S R V Q+ ++PG + ++ G++D+LL V + + +V+ +L+ I V
Sbjct: 62 VQNS---WRTVRAQLRQLPGASHIALVGGDFDVLLLVHTPDNRALRELVLSRLQAIPEVL 118
Query: 136 QTVTMVSFDT 145
T T++ F+T
Sbjct: 119 STRTLLVFET 128
>pir||A83392 probable transcription regulator PA2028 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948033|gb|AAG05416.1|AE004629_5 (AE004629) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 157
Score = 69.5 bits (167), Expect = 2e-11
Identities = 38/143 (26%), Positives = 74/143 (51%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD D+R+L L+ + + A +++++G+ ++ RI+RL EEG+I + + KK+
Sbjct: 5 LDIYDQRILALLQEESSLSTAEIAERIGLSQSPCWRRIQRLKEEGVIRKQVTLLDRKKIG 64
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
L T F I+ + AE + + P V E H++ G D +L++ + E R
Sbjct: 65 LNTQVFAQIKLNAHGRKNLTDFAEAMHQFPEVLECHVLMGAVDFMLRIVTRDIESYERFF 124
Query: 125 IDKLREIRGVGQTVTMVSFDTVK 147
+KL + G+ + ++V+ +K
Sbjct: 125 FEKLSAVPGIQEVNSIVALSEIK 147
>pir||F70010 transcription regulator Lrp/AsnC family homolog yugG - Bacillus
subtilis >gi|2125791|emb|CAB07919.1| (Z93934) unknown
[Bacillus subtilis] >gi|2635637|emb|CAB15130.1| (Z99120)
similar to transcriptional regulator (Lrp/AsnC family)
[Bacillus subtilis]
Length = 166
Score = 68.7 bits (165), Expect = 3e-11
Identities = 42/137 (30%), Positives = 77/137 (55%), Gaps = 2/137 (1%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
L + + +LE L N+R ++ T++K GIP V I +L +E +I ++ +++K++
Sbjct: 3 LTEKETEILEILDENSRADLETIAKMAGIPVNEVKTIIDKLEKEKVIIDYSAMIDWRKVD 62
Query: 65 --LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGR 122
G TA I ++ P G+ +VAE+I + V V++++G +DL + +R ++ +V R
Sbjct: 63 GHEGVTAMIDVKVTPKRGVGFDEVAERIYRFQEVESVYLMSGVYDLSVVIRGNSMSDVAR 122
Query: 123 IVIDKLREIRGVGQTVT 139
V DKL + V T T
Sbjct: 123 FVSDKLSTLDSVVSTTT 139
>pir||E75176 transcription regulatory protein, asnc Family PAB0392 - Pyrococcus
abyssi (strain Orsay) >gi|5458002|emb|CAB49492.1|
(AJ248284) transcriptional regulatory protein, AsnC f
amily [Pyrococcus abyssi]
Length = 141
Score = 68.7 bits (165), Expect = 3e-11
Identities = 42/144 (29%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 4 ILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKL 63
++D+ D+ +L+ L +AR ++K LGI T V R+K L E+GIIE +TIK N KKL
Sbjct: 1 MVDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKL 60
Query: 64 NLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRI 123
+ P+ +VAE++ + V E+++ +G+ ++ + A + E++ I
Sbjct: 61 GYSLVTITGVDTRPEKLF---EVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADI 117
Query: 124 VIDKLREIRGVGQTVTMVSFDTVK 147
+ +K+ +I GV + + + +K
Sbjct: 118 ISNKIGKIDGVTKVCPAIILERLK 141
>emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional regulatory protein.
[Streptomyces coelicolor A3(2)]
Length = 165
Score = 68.7 bits (165), Expect = 3e-11
Identities = 37/138 (26%), Positives = 79/138 (56%), Gaps = 5/138 (3%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
++++DR++++ L + R + L K G+ + VH R++RL + G+I + + + +
Sbjct: 20 MEELDRQIVQLLVKDGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAVG 79
Query: 65 LGTTAFILIR-YDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRI 123
L TAFI ++ +DP + +A+++A +P + H +AG+ + +LKVR + E+ +
Sbjct: 80 LPMTAFISVKPFDPSA---PDDIADRLAGVPEIEACHSVAGDENYILKVRVATPHELEEL 136
Query: 124 VIDKLREIRGVGQTVTMV 141
+ ++R + GV T+V
Sbjct: 137 -LARVRSLAGVSTRTTVV 153
>gi|11498085 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7429085|pir||B69309 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2650151|gb|AAB90762.1| (AE001071) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 180
Score = 68.3 bits (164), Expect = 4e-11
Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 10/120 (8%)
Query: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
LD+VD +++ LK N+R +I ++K L + R TV RI+RL EG+IE +TIK N
Sbjct: 3 LDEVDLKIINILKANSRVSITEIAKALNLSRQTVKARIERLENEGVIEGYTIKLASSFEN 62
Query: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
LG++A++ L + AE+I ++ V EV+ IA + L++V+ ++ E++ R++
Sbjct: 63 LGSSAYL---------LANTEDAEKILEMEEVVEVNRIASK-KYLIRVQLNSLEDLSRVM 112
>gb|AAD54636.1|AF081588_3 (AF081588) Zrp [Zymomonas mobilis]
>gi|11095429|gb|AAG29869.1|AF313764_12 (AF313764) Zrp
[Zymomonas mobilis]
Length = 153
Score = 67.1 bits (161), Expect = 9e-11
Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Query: 4 ILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKL 63
++D DR +L L+ NA +A +++++ + + R+ RL EEG I+ + KK+
Sbjct: 1 MIDYRDRHILSLLQANAEMPLAEIAERVALSVSACSRRVARLREEGYIKGTIALLDRKKI 60
Query: 64 NLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRI 123
NL TT F+L++ +G Q ++ IP + EVH + G +D +LK+ N E I
Sbjct: 61 NLPTTIFLLVKTGLHTGNYLEQFHAAVSAIPEIVEVHRLTGNFDYILKLALPNVEYYDVI 120
Query: 124 VIDKLREIRGVGQTVTMVSFDTVK 147
L+ + + +S +TVK
Sbjct: 121 YKQILKHVAFYDMS-AYISMETVK 143
>emb|CAC12110.1| (AL445066) transcription regulator LrpA related protein
[Thermoplasma acidophilum]
Length = 132
Score = 67.1 bits (161), Expect = 9e-11
Identities = 41/139 (29%), Positives = 82/139 (58%), Gaps = 12/139 (8%)
Query: 4 ILDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKL 63
++D+ DR +L L NAR + ++K L + TV RIK+++++GII+RFT++ + +
Sbjct: 2 VVDQKDRDILNLLVDNARISNTEIAKVLNVSEGTVRKRIKKMMDDGIIKRFTVETSDDTI 61
Query: 64 NLGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVY-EVHIIAGEWDLLLKVRASNAEEVGR 122
+ A +L++ D ++ + + +I + EV+ G+ D+ +++R + + + R
Sbjct: 62 D----ALVLVKID------NKRYRDALQRIKSRFREVYEFTGKIDVAIRIRTDSTDNLNR 111
Query: 123 IVIDKLREIRGVGQTVTMV 141
IV D++REI GV T T++
Sbjct: 112 IV-DQIREIDGVLDTDTLI 129
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.379
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48833887
Number of Sequences: 2977
Number of extensions: 1826064
Number of successful extensions: 5160
Number of sequences better than 1.0e-10: 42
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5121
Number of HSP's gapped (non-prelim): 42
length of query: 150
length of database: 189,106,746
effective HSP length: 56
effective length of query: 94
effective length of database: 155,591,474
effective search space: 14625598556
effective search space used: 14625598556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)