BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1237 (PAB1237) DE:Hypothetical protein
(396 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75019 hypothetical protein PAB1237 - Pyrococcus abyssi (st... 790 0.0
pir||A71206 hypothetical protein PH1915 - Pyrococcus horikoshii ... 763 0.0
sp|Q59047|YG53_METJA HYPOTHETICAL PROTEIN MJ1653 >gi|2128996|pir... 353 2e-96
sp|Q59043|YG49_METJA HYPOTHETICAL PROTEIN MJ1649 >gi|2128067|pir... 328 5e-89
pir||C72220 conserved hypothetical protein - Thermotoga maritima... 272 4e-72
pir||F70477 conserved hypothetical protein aq_2071 - Aquifex aeo... 259 4e-68
dbj|BAA35732.1| (D90734) Hypothetical protein [Escherichia coli] 230 2e-59
pir||D83601 conserved hypothetical protein PA0354 [imported] - P... 228 1e-58
pir||H82209 conserved hypothetical protein VC1354 [imported] - V... 225 6e-58
sp|P75876|YCCW_ECOLI HYPOTHETICAL 41.1 KD PROTEIN IN MGSA-HYAA I... 223 2e-57
pir||C70348 conserved hypothetical protein aq_533 - Aquifex aeol... 223 2e-57
pir||B72769 hypothetical protein APE0141 - Aeropyrum pernix (str... 218 1e-55
pir||F82809 conserved hypothetical protein XF0407 [imported] - X... 200 2e-50
pir||E75364 conserved hypothetical protein - Deinococcus radiodu... 198 8e-50
pir||G75565 conserved hypothetical protein - Deinococcus radiodu... 173 3e-42
sp|P39587|YWBD_BACSU HYPOTHETICAL 44.4 KD PROTEIN IN EPR-GALK IN... 150 3e-35
gb|AAG38581.1|AF316496_2 (AF316496) unknown [Staphylococcus xylo... 106 6e-22
pir||D81090 conserved hypothetical protein NMB1367 [imported] - ... 84 3e-15
pir||F81850 conserved hypothetical protein NMA1579 [imported] - ... 83 5e-15
pir||D75349 conserved hypothetical protein - Deinococcus radiodu... 79 1e-13
pir||F83469 hypothetical protein PA1407 [imported] - Pseudomonas... 76 9e-13
pir||A83266 conserved hypothetical protein PA3048 [imported] - P... 72 1e-11
pir||B64143 hypothetical protein HI0115 - Haemophilus influenzae... 71 3e-11
sp|P44524|YCBY_HAEIN HYPOTHETICAL PROTEIN HI0116 71 3e-11
sp|P75864|YCBY_ECOLI HYPOTHETICAL 78.9 KDA PROTEIN IN PYRD-PQIA ... 69 6e-11
>pir||E75019 hypothetical protein PAB1237 - Pyrococcus abyssi (strain Orsay)
>gi|5459109|emb|CAB50595.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 396
Score = 790 bits (2018), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MAKIIVDAQAARAIGKGAMIVFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNI 60
MAKIIVDAQAARAIGKGAMIVFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNI
Sbjct: 1 MAKIIVDAQAARAIGKGAMIVFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNI 60
Query: 61 MVRIVTKDKDVEINKDLFKERIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDI 120
MVRIVTKDKDVEINKDLFKERIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDI
Sbjct: 61 MVRIVTKDKDVEINKDLFKERIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDI 120
Query: 121 ASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRT 180
ASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRT
Sbjct: 121 ASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRT 180
Query: 181 IIEEGKAKFIVDMRGQKTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGA 240
IIEEGKAKFIVDMRGQKTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGA
Sbjct: 181 IIEEGKAKFIVDMRGQKTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGA 240
Query: 241 DEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAF 300
DEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAF
Sbjct: 241 DEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAF 300
Query: 301 VQHEKDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFL 360
VQHEKDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFL
Sbjct: 301 VQHEKDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFL 360
Query: 361 KMLEPYRTQAPDHPILMASKDTEYLKCLFLYVENMR 396
KMLEPYRTQAPDHPILMASKDTEYLKCLFLYVENMR
Sbjct: 361 KMLEPYRTQAPDHPILMASKDTEYLKCLFLYVENMR 396
>pir||A71206 hypothetical protein PH1915 - Pyrococcus horikoshii
>gi|3258357|dbj|BAA31040.1| (AP000007) 396aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 396
Score = 763 bits (1948), Expect = 0.0
Identities = 377/396 (95%), Positives = 389/396 (98%)
Query: 1 MAKIIVDAQAARAIGKGAMIVFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNI 60
MA+++VDAQAARAIGKGAMIVFKKGVVRVEG IKPGDIVEVYTRGGKFLGKGFANPNSNI
Sbjct: 1 MARVVVDAQAARAIGKGAMIVFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFANPNSNI 60
Query: 61 MVRIVTKDKDVEINKDLFKERIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDI 120
MVRIVTKDKDVEINKDLFK RIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDI
Sbjct: 61 MVRIVTKDKDVEINKDLFKRRIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDI 120
Query: 121 ASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRT 180
ASLQISSAGMERFKLDVAEAIMEVEP IETVFEKNTGRSRRREGLPEIERVLLGKEKYRT
Sbjct: 121 ASLQISSAGMERFKLDVAEAIMEVEPGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRT 180
Query: 181 IIEEGKAKFIVDMRGQKTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGA 240
II+EG+AKFIVDMRGQKTGFFLDQRENRLALEKW+ PGDRVLDVFTYTGGFAIHAAIAGA
Sbjct: 181 IIQEGRAKFIVDMRGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGA 240
Query: 241 DEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAF 300
DEVI IDKSPRAIETAKENAKLNGVED++KFIVGSAFEEMEKLQKKGEKFD+V+LDPPAF
Sbjct: 241 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAF 300
Query: 301 VQHEKDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFL 360
VQHEKDLK G+RAYFNVNFAGLNLVKDGGI VTCSCSQHVDLQMFKDMIIAAGAKAGKFL
Sbjct: 301 VQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL 360
Query: 361 KMLEPYRTQAPDHPILMASKDTEYLKCLFLYVENMR 396
KMLEPYRTQAPDHPILMASKDTEYLKCLFLYVE+MR
Sbjct: 361 KMLEPYRTQAPDHPILMASKDTEYLKCLFLYVEDMR 396
>sp|Q59047|YG53_METJA HYPOTHETICAL PROTEIN MJ1653 >gi|2128996|pir||C64506 hypothetical
protein MJ1653 - Methanococcus jannaschii
>gi|1500554|gb|AAB99674.1| (U67605) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 385
Score = 353 bits (896), Expect = 2e-96
Identities = 194/396 (48%), Positives = 283/396 (70%), Gaps = 17/396 (4%)
Query: 3 KIIVDAQAARAIGKGAMIVFKKGVVRVEG--TIKPGDIVEVYTRGGKFLGKGFANPNSNI 60
K+ VD AI KG +I+ + ++ E +I+ G++V++Y++ GKFLG+GF NP
Sbjct: 4 KLYVDFGGYSAIEKGNLIIPRDNILNKEDFDSIEIGEVVDIYSKRGKFLGRGFKNPKE-- 61
Query: 61 MVRIVTKDKDVEINKDLFKERIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDI 120
VRI+T K+ +++++ +E+I KANEYR K L + + YRMVY ++D+L GL++D++NDI
Sbjct: 62 -VRIMTLRKE-DLDENYIREKIIKANEYRLK-LGFKDTYRMVYTQSDWLNGLVIDKYNDI 118
Query: 121 ASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRT 180
A++QI + G+E+ K V E ++++ I++++EK++GR+R+R GLPE+E +L G EK T
Sbjct: 119 ATVQIFNYGIEKMKDVVVETLLDLG--IDSIYEKSSGRNRKRAGLPEVEGILAG-EKTET 175
Query: 181 IIEEGKAKFIVDMRGQKTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGA 240
II+EG+AKF V GQKTGFFLDQRENRL LEK+I GDRVLD+ YTGGF++HAAI GA
Sbjct: 176 IIQEGEAKFKVTFDGQKTGFFLDQRENRLELEKFIKEGDRVLDICCYTGGFSVHAAIRGA 235
Query: 241 DEVIAIDKSPRAIETAKENAKLNGV-EDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPA 299
EV+ +D S +A++ A+EN +LN + +D+ +FI G+AF+ ME+ + GEKFDVVILDPPA
Sbjct: 236 -EVVGVDLSKKALKLAEENMELNNIPKDRYEFIEGNAFKVMEEFIEDGEKFDVVILDPPA 294
Query: 300 FVQHEKDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKF 359
F Q +K LK ++ Y +N G L + VTCSCSQ ++ FK ++I A KA K+
Sbjct: 295 FAQSKKALKSAIKGYHMLNRFGAKLA--DRLLVTCSCSQPLEPDAFKALVIDACLKAKKW 352
Query: 360 LKMLEPYRTQAPDHPILMASKDTEYLKCLFLYVENM 395
K+++ Y +Q+PDHPI SK TEYLKCLFL VE +
Sbjct: 353 AKIIK-YGSQSPDHPI--TSKGTEYLKCLFLSVEEI 385
>sp|Q59043|YG49_METJA HYPOTHETICAL PROTEIN MJ1649 >gi|2128067|pir||G64505 hypothetical
protein homolog MJ1649 - Methanococcus jannaschii
>gi|1592232|gb|AAB99670.1| (U67605) conserved
hypothetical protein) [Methanococcus jannaschii]
Length = 387
Score = 328 bits (833), Expect = 5e-89
Identities = 176/396 (44%), Positives = 266/396 (66%), Gaps = 15/396 (3%)
Query: 1 MAKIIVDAQAARAIGKGAMIVFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNI 60
+ K+ +D +A +I + +V+ K + + G + + + T GKF+ K NP S I
Sbjct: 5 LIKLEIDRRAYNSIKNFSRLVYTKAI-KNRGDLPKKEEIVTLTYNGKFVAKALYNPKSVI 63
Query: 61 MVRIVTKDKDVEINKDLFKERIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDI 120
+ + T+D+ EI+ D F +RI A YR+ +L Y N YR +Y E D LP +I D++N++
Sbjct: 64 LKILTTEDE--EIDYDFFYKRIFNAKIYRENILNYKNTYRWIYAEGDELPTIIFDKYNEL 121
Query: 121 ASLQISSAGMERFKL-DVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYR 179
++Q+ S +E+ L D+ + + E+ ++ET++ K R ++G +++ K K+
Sbjct: 122 GAMQLMSKLIEKEYLKDIVDILFELS-DLETIYVK-----RGKKGERIRDKIFGDKNKFE 175
Query: 180 TIIEEGKAKFIVDMRGQKTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAG 239
T+I+EG AKF V++RG KTGFFLDQRENRL LEK+I GDRVLD+ YTGGF++HAAI G
Sbjct: 176 TVIKEGDAKFKVNVRGHKTGFFLDQRENRLYLEKFIKEGDRVLDICCYTGGFSVHAAIRG 235
Query: 240 ADEVIAIDKSPRAIETAKENAKLNGV-EDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPP 298
A EV+ +D S +A++ A+EN +LN + +D+ +FI G+AFE M+++ + EKFDVVILDPP
Sbjct: 236 A-EVVGVDLSKKALKLAEENIELNNIPKDRYEFIEGNAFEVMKEMIEDKEKFDVVILDPP 294
Query: 299 AFVQHEKDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGK 358
AF Q E D+K +RAY ++N+ G+ L K IFVTCSCS HVD +MFK +I++ +A K
Sbjct: 295 AFTQTEDDIKNALRAYASLNYLGIKLAK--RIFVTCSCSHHVDKEMFKRTVISSAFRAKK 352
Query: 359 FLKMLEPYRTQAPDHPILMASKDTEYLKCLFLYVEN 394
L M++ Y+ QAPDHPI + +K+ EYLKC+F YV+N
Sbjct: 353 ELIMID-YKGQAPDHPISIGNKNLEYLKCIFFYVKN 387
>pir||C72220 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982274|gb|AAD36764.1|AE001810_3 (AE001810)
conserved hypothetical protein [Thermotoga maritima]
Length = 391
Score = 272 bits (689), Expect = 4e-72
Identities = 151/395 (38%), Positives = 235/395 (59%), Gaps = 8/395 (2%)
Query: 1 MAKIIVDAQAARAIGKGAMIVFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNI 60
MAK+ + R G G + +F +++VEG + G +V+V+ G F GKG+ N NS I
Sbjct: 1 MAKVFLKRMNRRISG-GHLWIFYNEILKVEGEYENGSVVDVFRPDGSFFGKGYINDNSKI 59
Query: 61 MVRIVTKDKDVEINKDLFKERIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDI 120
VRI+T +V I+++ K RI+ A + +KK++K T +R+V+ E D+LPGLIVD F D
Sbjct: 60 RVRILTWKNEV-IDRNFIKNRIESALKRKKKLVKETTAFRVVHSEGDFLPGLIVDLFGDY 118
Query: 121 ASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRT 180
QI++ GME+ K + ++++E+ + ++EK+ G R +EGL E + GK
Sbjct: 119 LVFQITTLGMEKMKDWILDSLVEIFKP-KGIYEKSEGTFREKEGLDNREEWVYGKGPELI 177
Query: 181 IIEEGKAKFIVDMRGQKTGFFLDQREN-RLALEKWINPGDRVLDVFTYTGGFAIHAAIAG 239
E KF+ D RGQKTGFFLDQREN R+ ++ + G LDVF+YTG FA+H G
Sbjct: 178 EFEMNGFKFLADTRGQKTGFFLDQRENARMVMD--LAEGKVCLDVFSYTGNFAVHLLKGG 235
Query: 240 ADEVIAIDKSPRAIETAKENAKLNGVED-KIKFIVGSAFEEMEKLQKKGEKFDVVILDPP 298
A V +D S RA+E A+E KLNG + + + G+AF+ ++ ++G K+D+V+LDPP
Sbjct: 236 AKHVTLVDYSERALEVAREILKLNGFDSSRYDLLPGNAFDILKSFDREGRKYDLVVLDPP 295
Query: 299 AFVQHEKDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGK 358
+F + +L+ R Y +N + ++K G+ VT SC+Q V ++F++++ A
Sbjct: 296 SFAKSSSNLESARRGYKEINLRAMRILKKPGVLVTSSCTQIVSEELFREILFDASFDTKT 355
Query: 359 FLKMLEPYRTQAPDHPILMASKDTEYLKCLFLYVE 393
L +L Q PDHP+LM +T+YLK L V+
Sbjct: 356 SLTVLR-RGGQPPDHPVLMNVPETQYLKFYILQVD 389
>pir||F70477 conserved hypothetical protein aq_2071 - Aquifex aeolicus
>gi|2984295|gb|AAC07819.1| (AE000771) hypothetical
protein [Aquifex aeolicus]
Length = 391
Score = 259 bits (655), Expect = 4e-68
Identities = 142/373 (38%), Positives = 227/373 (60%), Gaps = 4/373 (1%)
Query: 21 VFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLFKE 80
V++ + K G+IV V GKFLG G+ NP NI +RI++ DK+ + +L ++
Sbjct: 21 VYRSEIASFSRKPKKGEIVVVRDVNGKFLGYGYINPEVNIAIRILSFDKNEPVTPELIRK 80
Query: 81 RIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDIASLQISSAGMERFKLDVAEA 140
RIK+A EYRK++ +N YR+V+ E D LPGLIVD + +++ ++ GM +F+ + +
Sbjct: 81 RIKQAYEYRKRLYINSNAYRLVHSEGDLLPGLIVDVYGSYLAVEFTTYGMNQFREVILDT 140
Query: 141 IMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIEEGKAKFIVDM-RGQKTG 199
++E+ + ++EK ++R EGL ERV+ G+ II E K+ +++ +GQKTG
Sbjct: 141 LVEL-LRPKGIYEKVNEIAKRVEGLDVEERVIYGEVPEEVIIWEHDLKYYINIPQGQKTG 199
Query: 200 FFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKEN 259
FFLDQR R + + PGDR LDVF +TGGFA++ AGA EVI +D S A++ A++N
Sbjct: 200 FFLDQRNARKFVRNLVEPGDRCLDVFCHTGGFALNMKRAGAGEVIGVDISELALKEAEKN 259
Query: 260 AKLNGVEDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAFVQHEKDLKPGMRAYFNVNF 319
A+LNG D IK++ +AF+ + +L KKGEKFDV+I+DPP+F ++ + +R Y +
Sbjct: 260 ARLNGFTD-IKWVKANAFDYLRELDKKGEKFDVIIIDPPSFAKNRAAVPNALRGYKELCV 318
Query: 320 AGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPILMAS 379
GL + K GG SCS H+ Q D+++ A + ++++ Q DHP ++
Sbjct: 319 RGLKIAKSGGYLAIFSCSFHITEQHLLDVLLQASYDVRRQVRVIAK-TFQDLDHPWILQM 377
Query: 380 KDTEYLKCLFLYV 392
+T YLK +++ V
Sbjct: 378 PNTLYLKGVWVEV 390
>dbj|BAA35732.1| (D90734) Hypothetical protein [Escherichia coli]
Length = 396
Score = 230 bits (580), Expect = 2e-59
Identities = 124/371 (33%), Positives = 221/371 (59%), Gaps = 8/371 (2%)
Query: 21 VFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLFKE 80
VF V R+EG G+ +++ GK+L +G +P S I R+ T D I+ F
Sbjct: 22 VFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSR 81
Query: 81 RIKKANEYRKKVLKYTNV--YRMVYGEADYLPGLIVDRFNDIASLQISSAGMERFKLDVA 138
R+++A ++R + + + YR++ GE+D LPG+ +DRF + LQ+ SAG E + +
Sbjct: 82 RLQQAQKWRDWLAQKDGLDSYRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALI 141
Query: 139 EAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTI-IEEGKAKFIVDMR-GQ 196
A+ + PE ++++++ R++EG+ + + G+ + IEE K +VD++ G
Sbjct: 142 SALQTLYPEC-SIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLLVDIQHGH 200
Query: 197 KTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETA 256
KTG++LDQR++RLA +++ RVL+ F+YTGGFA+ A + G +V+++D S A++ A
Sbjct: 201 KTGYYLDQRDSRLATRRYVE-NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIA 259
Query: 257 KENAKLNGVE-DKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAFVQHEKDLKPGMRAYF 315
++N +LN ++ K +F+ F+ + + +GEKFDV+++DPP FV+++ L R Y
Sbjct: 260 RQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYK 319
Query: 316 NVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPI 375
++N + L+ +GGI +T SCS + +F+ +I A AG+ ++ +E +R QA DHP+
Sbjct: 320 DINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFR-QAADHPV 378
Query: 376 LMASKDTEYLK 386
+ + YLK
Sbjct: 379 IATYPEGLYLK 389
>pir||D83601 conserved hypothetical protein PA0354 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946204|gb|AAG03743.1|AE004473_5 (AE004473)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 398
Score = 228 bits (574), Expect = 1e-58
Identities = 133/354 (37%), Positives = 202/354 (56%), Gaps = 5/354 (1%)
Query: 36 GDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLFKERIKKANEYRKKVLKY 95
GD + GK LG +PN+ I R++++D ++K L RI A R+++
Sbjct: 41 GDQAVLEMANGKPLGIVALSPNNLICGRLISRDTKHVLDKSLLVHRINIALSLRERLFDK 100
Query: 96 TNVYRMVYGEADYLPGLIVDRFNDIASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKN 155
YR+VYG++D LPGL+VDRF D+ +Q++SA ME K +V A+++V ++ KN
Sbjct: 101 P-FYRLVYGDSDLLPGLVVDRFGDVLVVQLASAAMELRKDEVLAALLQVLKPAAVLW-KN 158
Query: 156 TGRSRRREGLPEIERVLLGKEKYRTIIEEGKAKFIVD-MRGQKTGFFLDQRENRLALEKW 214
+R EGL G+ +EE KF + GQKTG+F D R NR L +
Sbjct: 159 DSSARDAEGLERYVANAYGEVPEWVALEENGVKFEAPVLAGQKTGWFYDHRMNRARLAPY 218
Query: 215 INPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVG 274
+ G RVLD+F+Y GG+ I AA GA EV+ +D S A++ + NA LNGV +K+ + G
Sbjct: 219 VQ-GKRVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGVAEKVACVEG 277
Query: 275 SAFEEMEKLQKKGEKFDVVILDPPAFVQHEKDLKPGMRAYFNVNFAGLNLVKDGGIFVTC 334
FE + +L+ E+FDVVI DPPAF++ +KDLK G AY +N + L+ GI V+
Sbjct: 278 DVFEALRELKAADERFDVVIADPPAFIKRKKDLKNGEAAYRRLNEQAMRLLSKDGILVSA 337
Query: 335 SCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPILMASKDTEYLKCL 388
SCS H+ ++++I + + +++LE Q PDHP+ +A +T Y+K L
Sbjct: 338 SCSMHLPEDDLQNILIGSARHLDRNIQLLE-RGGQGPDHPVHLAIAETRYIKSL 390
>pir||H82209 conserved hypothetical protein VC1354 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655847|gb|AAF94512.1|
(AE004215) conserved hypothetical protein [Vibrio
cholerae]
Length = 418
Score = 225 bits (568), Expect = 6e-58
Identities = 135/373 (36%), Positives = 220/373 (58%), Gaps = 11/373 (2%)
Query: 21 VFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLFKE 80
VF +G+ +VEGT K G+ V+VY+ GK+L K +P+S I R+ + +++ I++D F +
Sbjct: 43 VFSRGISKVEGTPKLGETVDVYSFEGKWLAKAAYSPHSQITARVWSFEQE-PIDRDFFIK 101
Query: 81 RIKKANEYRKKVLKYTNV--YRMVYGEADYLPGLIVDRFNDIASLQISSAGMERFKLDVA 138
RI++A R +++ + YR++ E+D LPG+ +D++ D Q+ SAG E K +
Sbjct: 102 RIEQAQLLRNDIIERDGLTGYRLIAAESDGLPGITIDKYQDYLVCQLLSAGAEYQKQTLV 161
Query: 139 EAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTI-IEEGKAKFIVDM-RGQ 196
EA++ PE ++E++ R++EGL E VL G+ +++ IEE K VD+ G
Sbjct: 162 EALLHCFPECH-IYERSDVAVRKKEGLDERVGVLHGELPPKSVVIEENGVKISVDIVGGH 220
Query: 197 KTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETA 256
KTGF+LDQR++R K++ + VL+ F+YTGGF ++A GA VI D S A++TA
Sbjct: 221 KTGFYLDQRDSRFQSMKYVKEKE-VLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTA 279
Query: 257 KENAKLNGVEDKIK---FIVGSAFEEMEKLQKKGEKFDVVILDPPAFVQHEKDLKPGMRA 313
K NA+LNG + K F+ F+ + + + +G +FDVV++DPP F + + L R
Sbjct: 280 KFNAELNGFDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLDGACRG 339
Query: 314 YFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDH 373
Y ++N + ++ GG +T SCS +D +F+ +I A AG+ +K +E + QA DH
Sbjct: 340 YKDINMLAMQILNPGGTLLTYSCSGLMDQVLFQKIIADAALDAGRDVKFVERFE-QAADH 398
Query: 374 PILMASKDTEYLK 386
P A + YLK
Sbjct: 399 PTDTAYPEGFYLK 411
>sp|P75876|YCCW_ECOLI HYPOTHETICAL 41.1 KD PROTEIN IN MGSA-HYAA INTERGENIC REGION
>gi|7430012|pir||F64837 probable methyltransferase b0967
- Escherichia coli >gi|1787201|gb|AAC74053.1| (AE000198)
putative oxidoreductase [Escherichia coli K12]
Length = 367
Score = 223 bits (563), Expect = 2e-57
Identities = 120/363 (33%), Positives = 217/363 (59%), Gaps = 8/363 (2%)
Query: 29 VEGTIKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLFKERIKKANEY 88
+EG G+ +++ GK+L +G +P S I R+ T D I+ F R+++A ++
Sbjct: 1 MEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKW 60
Query: 89 RKKVLKYTNV--YRMVYGEADYLPGLIVDRFNDIASLQISSAGMERFKLDVAEAIMEVEP 146
R + + + YR++ GE+D LPG+ +DRF + LQ+ SAG E + + A+ + P
Sbjct: 61 RDWLAQKDGLDSYRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYP 120
Query: 147 EIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTI-IEEGKAKFIVDMR-GQKTGFFLDQ 204
E ++++++ R++EG+ + + G+ + IEE K +VD++ G KTG++LDQ
Sbjct: 121 EC-SIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQ 179
Query: 205 RENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLNG 264
R++RLA +++ RVL+ F+YTGGFA+ A + G +V+++D S A++ A++N +LN
Sbjct: 180 RDSRLATRRYVE-NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK 238
Query: 265 VE-DKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAFVQHEKDLKPGMRAYFNVNFAGLN 323
++ K +F+ F+ + + +GEKFDV+++DPP FV+++ L R Y ++N +
Sbjct: 239 LDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQ 298
Query: 324 LVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPILMASKDTE 383
L+ +GGI +T SCS + +F+ +I A AG+ ++ +E +R QA DHP++ +
Sbjct: 299 LLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFR-QAADHPVIATYPEGL 357
Query: 384 YLK 386
YLK
Sbjct: 358 YLK 360
>pir||C70348 conserved hypothetical protein aq_533 - Aquifex aeolicus
>gi|2983178|gb|AAC06779.1| (AE000694) hypothetical
protein [Aquifex aeolicus]
Length = 380
Score = 223 bits (563), Expect = 2e-57
Identities = 132/373 (35%), Positives = 219/373 (58%), Gaps = 15/373 (4%)
Query: 21 VFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLFKE 80
VF+ V ++EG G + E+Y G FL G +P S I R+++ +++ E+N++ FK
Sbjct: 20 VFRDEVEKIEGE---GIVAELYDSEGNFLALGTYSPYSRIAFRVLSYERE-EVNEEFFKR 75
Query: 81 RIKKANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDIASLQISSAGMERFKLDVAEA 140
R++++ R+ + +N YR+ + E+D L GLI+DR+ D +Q+ S ME K V +
Sbjct: 76 RLRESELLRRDIP--SNAYRLAFSESDLLSGLIIDRYGDAFVIQVRSYPMEILKEKVLKT 133
Query: 141 IMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIEEGKAKFIVDM-RGQKTG 199
++E E V+E++ + RR EGL E + +L GK + IIEE + KF+VD+ G KTG
Sbjct: 134 LVE-EFNPAFVYERSDFKGRREEGLKEFKGLLYGKLENPLIIEEREFKFLVDVVEGLKTG 192
Query: 200 FFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKEN 259
F+LDQR+NR + + GDRVLD+F Y+GGF+++ A GA +V+ +D + RA+E A+EN
Sbjct: 193 FYLDQRDNREYVRNLVKEGDRVLDLFCYSGGFSVYCANRGA-KVVGVDINKRAVELAREN 251
Query: 260 AKLNGVEDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAFVQHEKDLKPGMRAYFNVNF 319
AKLN V K F++G+AF + +Q+ E++D++I DPPA + +K+ + + A + + +
Sbjct: 252 AKLNSV--KADFVLGNAF---DFIQESKEEWDLIIADPPAIAKTKKEKESILWAIWKLAY 306
Query: 320 AGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPILMAS 379
+K GG CSC+ + + + A + + +++ Q DHP L
Sbjct: 307 YSFQKLKKGGSLFICSCTYQISSEEMIRQVRLASTDVKRRI-IIKSLNLQPIDHPYLPTF 365
Query: 380 KDTEYLKCLFLYV 392
++ YLKCL V
Sbjct: 366 PESLYLKCLHAIV 378
>pir||B72769 hypothetical protein APE0141 - Aeropyrum pernix (strain K1)
>gi|5103531|dbj|BAA79052.1| (AP000058) 404aa long
hypothetical protein [Aeropyrum pernix]
Length = 404
Score = 218 bits (549), Expect = 1e-55
Identities = 136/397 (34%), Positives = 217/397 (54%), Gaps = 10/397 (2%)
Query: 3 KIIVDAQAARAIGKGAMIVFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNIMV 62
K++ A +G+ I+++K V R G + GD+VEV R G + G N+ + V
Sbjct: 8 KVLATGVGAAKAARGSSIIYRKWV-RGTGGLISGDLVEVIDRNGSEIACGLWEENTPVAV 66
Query: 63 RIVTKDKDVEINKDLFKERIKKAN---EYRKKVLKYTNVYRMVYGEADYLPGLIVDRFND 119
RI+ K +E + + ER +A R K + YR++ + D L GLI D + D
Sbjct: 67 RIIHWGKCLERSPEEALERALEAAYKARVRSKWAVEFDSYRLINSDGDRLSGLIADVYKD 126
Query: 120 IASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYR 179
+A +Q SS ++R +++AI + + V+EK+ RSR GL R L+G+ K
Sbjct: 127 VAVVQSSSPAIDRHISYISQAIRKFTG-VTHVYEKSVQRSRLDIGLEPRRRWLMGRRK-E 184
Query: 180 TIIEEGKAKFIVDM-RGQKTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIA 238
+IEEG+A+FIVD+ RGQKTGFFLDQR NRL L + PGD VLDVF+YTGGF IHA ++
Sbjct: 185 VVIEEGQARFIVDVERGQKTGFFLDQRVNRLELARVAGPGDSVLDVFSYTGGFGIHALLS 244
Query: 239 GADEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPP 298
GA + + I++ A++ ++N +LNG+++ I+ ++ + + + E FD+V +DPP
Sbjct: 245 GASKAVFIEEDAHAVKLLRKNLRLNGIQENKALILNTSIWKAIQAGEPRESFDIVTVDPP 304
Query: 299 AFVQH--EKDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKA 356
AF+Q ++ K G RAY + L I SCS + + F ++ +
Sbjct: 305 AFIQKPGQEAKKRGFRAYKSSYLFALERAAGNSIVYLSSCSYFLSREEFITLVTEVASAL 364
Query: 357 GKFLKMLEPYRTQAPDHPILMASKDTEYLKCLFLYVE 393
K ++L R +PDH + + YLK F++++
Sbjct: 365 EKEYRILGDVRGASPDH-VYRGEEYLSYLKGAFIHID 400
>pir||F82809 conserved hypothetical protein XF0407 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105245|gb|AAF83217.1|AE003892_2 (AE003892)
conserved hypothetical protein [Xylella fastidiosa]
Length = 389
Score = 200 bits (504), Expect = 2e-50
Identities = 126/376 (33%), Positives = 206/376 (54%), Gaps = 13/376 (3%)
Query: 21 VFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLFKE 80
+F+K + + +KPG IV+V G+++G+GF N +S I VRI+ +DV +++ F
Sbjct: 21 LFQKLLEKPSVRLKPGTIVDVVGVDGEWVGRGFYNGHSRIAVRILETRQDVVVDEAWFVR 80
Query: 81 RIKKANEYRKKVLKY---TNVYRMVYGEADYLPGLIVDRFNDIASLQISSAGMERFKLDV 137
RI +A R++VLK ++ +R+V+ E D L GL+VDR+ D+ +Q +AGM R + +
Sbjct: 81 RIAEAVGLRREVLKLDAVSDAWRVVHSEGDGLSGLVVDRYGDLLVVQFFAAGMFRHREWI 140
Query: 138 AEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIEEGKAKFIVDMRG-Q 196
A+ + P F +++ + + + +I E KF+VD G
Sbjct: 141 YTALRQQFPGAR--FHSFADEHVQKQESFDFHSTI---DTESVVITEHGVKFLVDPMGAH 195
Query: 197 KTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETA 256
KTGFF DQRENR L + + G VLD+ TGGFA++AA+ GA +V+ +D I+ A
Sbjct: 196 KTGFFADQRENRQWLSQGV-AGKTVLDLCCNTGGFAVYAALRGAADVVGVDIDQDVIQIA 254
Query: 257 KENAKLNGVEDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAFVQHEKDLKPGMRAYFN 316
K NAKLN V K F+ F + +G+++DVVILDP + + ++ Y +
Sbjct: 255 KANAKLNSVRPK--FLQADIFPYLRDAAVRGDQYDVVILDPAKMTRDRDQIINALKKYLD 312
Query: 317 VNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPYRTQAPDHPIL 376
+N L +VK GG+F T SC+ + + F +M+ A +G+ +++L+ PDHP +
Sbjct: 313 MNKLALGVVKKGGLFATFSCTGLISEEQFLEMLRRAAFYSGRTIQILK-VAGAGPDHPFM 371
Query: 377 MASKDTEYLKCLFLYV 392
+++ YLK F V
Sbjct: 372 AHVQESRYLKATFCRV 387
>pir||E75364 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459463|gb|AAF11251.1|AE002011_2 (AE002011)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 379
Score = 198 bits (499), Expect = 8e-50
Identities = 120/368 (32%), Positives = 203/368 (54%), Gaps = 11/368 (2%)
Query: 26 VVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNIMVR-IVTKDKDVEINKDLFKERIKK 84
+ + +PGD+V+V GGK +G+G+ NP+ +R +V + +D+++N ++ER++
Sbjct: 16 IASADAGTQPGDVVDVRDEGGKLVGRGYFNPDGATPLRMLVWEARDIDLN--FYRERVRA 73
Query: 85 ANEYRKKVLKYTNVYRMVYGEADYLPGLIVDRFNDIASLQISSAGMERFKLDVAEAIMEV 144
A R+ + TN R+++ EAD LPG++ D+F D+ S+Q+ +AG+E+ + + A+ E
Sbjct: 74 ALARREGRITGTNAMRVLHAEADGLPGVVADQFGDVLSVQLRNAGVEQHRDLILRALRE- 132
Query: 145 EPEIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIEEGKAKF-IVDMRGQKTGFFLD 203
E + FE++ RR+EGL + L G+ R E + + QKTGFFLD
Sbjct: 133 ETGATSAFERSDTGERRKEGLDLVSGPLWGEVPERVEFYEDDLRLHFAPLDAQKTGFFLD 192
Query: 204 QRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLN 263
QR+NR L + PG + LDV++YTGGF++HAA AGA AIDK A+ + A+ N
Sbjct: 193 QRDNRRMLAGLLAPGQQFLDVYSYTGGFSLHAAKAGAQST-AIDKDSVALGVLEREAREN 251
Query: 264 GVEDKIKFIVGSAFEEMEKLQKKGEKFDVVILDPPAFVQHEKDLKPGMRAYFNVNFAGLN 323
GV +++ G A E++ L+K+ + F + DPP + D+ R + + A L
Sbjct: 252 GVSVGLRW--GDAIEQLAALEKEKKTFHAAVFDPPTLAKRRDDVPRAKRIFTDGTAALLR 309
Query: 324 LVKDGGIFVTCSCSQHVDLQMFKDMI-IAAGAKAGKFLKMLEPYRTQAPDHPILMASKDT 382
++ GG + +C+ ++ + D +AAGA + Y Q DHP L++ ++
Sbjct: 310 MLVPGGHVLVSTCAHYIRVDDLLDAARVAAGAADCDAEVVAVTY--QPADHPHLLSVPES 367
Query: 383 EYLKCLFL 390
YLK + L
Sbjct: 368 LYLKSILL 375
>pir||G75565 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457710|gb|AAF09641.1|AE001868_3 (AE001868)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 408
Score = 173 bits (434), Expect = 3e-42
Identities = 121/401 (30%), Positives = 208/401 (51%), Gaps = 14/401 (3%)
Query: 3 KIIVDAQAARAIGKGAMIVFKKGVVRVEGTIKPGDIVEVYTRGGKFLGKGFANPNSNIMV 62
++ V A I G V++ V +PG++ VY R +FL G +P S + +
Sbjct: 12 RLRVSKAAELHIRDGHPWVYESSVREQNREGEPGELAVVYDRRDRFLAIGLYDPFSPLRL 71
Query: 63 RIVTKDKDVEINKDLFKERIKKANEYRKKVLKY------TNVYRMVYGEADYLPGLIVDR 116
R++ +++ + R+ A R + T+ YR++ GE+D PGL+VDR
Sbjct: 72 RVLHTGMPTQLDDAWWAARLDAALARRAALFGPLTAFGDTDGYRVLNGESDGFPGLVVDR 131
Query: 117 FNDIASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIE-RVLLGK 175
+ + +++ +A + E P+ V + + R L + +V+ G+
Sbjct: 132 YAGVLVMKLYTAAWFPHLRRMLELFAARAPDFAVVLRLSRNIAERAADLGLHDGQVIYGE 191
Query: 176 EKYRTII-EEGKAKFIVDMR-GQKTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAI 233
+++ E +F ++R GQKTGFFLDQRENR +E ++ G RVL+ F+++GGF++
Sbjct: 192 LAGDSVVFRESGLRFEAEVRQGQKTGFFLDQRENRRRVEG-LSEGRRVLNAFSFSGGFSL 250
Query: 234 HAAIAGADEVIAIDKSPRAIETAKENAKLNGVEDKI-KFIVGSAFEEMEKLQKKGEKFDV 292
+AA GA EV ++D S A+ +A+ N LN + K + FE + + G +D+
Sbjct: 251 YAARGGASEVTSLDISAHALRSAERNFALNPELSAVHKTVQADVFEWLPAGKGSGADYDL 310
Query: 293 VILDPPAFVQHEKDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAA 352
VILDPP+ + E + + +RAY + GL + GGI V+ SCS HV + F++ +++A
Sbjct: 311 VILDPPSLARREAEREGAIRAYGKLAEGGLTRLAPGGILVSASCSAHVSAEEFEEAVMSA 370
Query: 353 GAKAGKFLKMLEPYRTQAPDHPILMASKDTEYLKCLFLYVE 393
++G+ + L R APDH A + EYLK +FL ++
Sbjct: 371 VRRSGRRWRKLLSSR-HAPDHHASFA--EAEYLKAVFLQMD 408
>sp|P39587|YWBD_BACSU HYPOTHETICAL 44.4 KD PROTEIN IN EPR-GALK INTERGENIC REGION
>gi|629026|pir||S39674 ywbD protein - Bacillus subtilis
>gi|413943|emb|CAA51575.1| (X73124) ipa-19d [Bacillus
subtilis] >gi|2636371|emb|CAB15862.1| (Z99123) alternate
gene name: ipa-19d~similar to hypothetical proteins
[Bacillus subtilis]
Length = 396
Score = 150 bits (374), Expect = 3e-35
Identities = 106/386 (27%), Positives = 196/386 (50%), Gaps = 9/386 (2%)
Query: 11 ARAIGKGAMIVFKKGVVRVEGTIKPGDIVEVYTR-GGKFLGKGFANPNSNIMVRIVTKDK 69
A I KG ++ K+ + G +K GD+V++ + GG+FL +G+ + + +T++K
Sbjct: 11 AAKIKKGYPLIEKEALAGSAGHMKEGDLVDIVSESGGEFLARGYYGLQNKGVGWTLTRNK 70
Query: 70 DVEINKDLFKERIKKANEYRKKVLKY--TNVYRMVYGEADYLPGLIVDRFNDIASLQISS 127
+I++ F ++ KA + R K+ + T +R+ GE D + G+ +D ++ +Q S
Sbjct: 71 HEQIDQAFFLSKLTKAAQARAKLFEAQDTTAFRLFNGEGDGVGGVTIDYYDGYLLIQWYS 130
Query: 128 AGMERFKLDVAEAIMEVEPEIETVFEKNTGRSRRREGLPEIERVLLGKE-KYRTIIEEGK 186
G+ FK + A+ E++ + + ++EK R E + + G+ ++ II+E
Sbjct: 131 KGIYTFKDMLISALDEMDLDYKAIYEKK--RFDTAGQYVEDDDFVKGRRGEFPIIIQENG 188
Query: 187 AKFIVDMR-GQKTGFFLDQRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIA 245
++ VD+ G TG FLDQR R A+ G VL+ F+YTG F++ AA+ GA++ +
Sbjct: 189 IQYAVDLNEGAMTGIFLDQRHVRKAIRDRYAKGKTVLNTFSYTGAFSVAAALGGAEKTTS 248
Query: 246 IDKSPRAIETAKENAKLNGVEDKIKFI-VGSAFEEMEKLQKKGEKFDVVILDPPAFVQHE 304
+D + R++ E +N ++ + I V F KK +FD++ILDPP+F + +
Sbjct: 249 VDVANRSLAKTIEQFSVNKLDYEAHDIKVMDVFNYFSYAAKKDLRFDLIILDPPSFARTK 308
Query: 305 KDLKPGMRAYFNVNFAGLNLVKDGGIFVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 364
K + Y N+ + + D G+ V + S ++ FK I AA + + ++E
Sbjct: 309 KRTFSAAKDYKNLLKETIAITADKGVIVASTNSSAFGMKKFKGFIDAAFKETNERYTIIE 368
Query: 365 PYRTQAPDHPILMASKDTEYLKCLFL 390
+ T D + A + YLK + L
Sbjct: 369 EF-TLPEDFKTISAFPEGNYLKVVLL 393
>gb|AAG38581.1|AF316496_2 (AF316496) unknown [Staphylococcus xylosus]
Length = 389
Score = 106 bits (261), Expect = 6e-22
Identities = 80/327 (24%), Positives = 156/327 (47%), Gaps = 22/327 (6%)
Query: 33 IKPGDIVEVYTRGGKFLGKGFANPNSNIMVRIVTKDKDVEINKDLFKERIKKANEYRKKV 92
+K GD+ + +++ + + +++ DK+ IN K +K+ N +
Sbjct: 32 LKEGDLFYLVNNKEQYIATAYVGKQHKGIGWVLSYDKNEVINTQFLKNYLKQQNLKERIF 91
Query: 93 L--KYTNVYRMVYGEADYLPGLIVDRFNDIASLQISSAGMERFKLDVAEAIMEVEPEIET 150
+ TN +R+ GE D + GL +D ++ +Q S G+ +F+ +V A+ V P +
Sbjct: 92 IISTGTNAFRVFNGEGDGVGGLTIDNYDGHFLIQWYSKGIYKFRYNVLSALKAVFP-YTS 150
Query: 151 VFEKNTGRSRRREG------LPEIERVLLGKEKYRTIIEEGKAKFIVDMR-GQKTGFFLD 203
V+EK + +G PE+ +IEE + V + G TG FLD
Sbjct: 151 VYEKMRFKDTEIKGGFVDGDAPELP----------IVIEENFTFYNVHLDDGPMTGIFLD 200
Query: 204 QRENRLALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLN 263
Q++ R L+ VL+VF+YTG F++ AA A+ ++D + R+ +EN LN
Sbjct: 201 QKKVRKKLKDQYAENKEVLNVFSYTGAFSVVAA-EKAEMTTSVDLANRSRALTEENLGLN 259
Query: 264 GVEDKIKFI-VGSAFEEMEKLQKKGEKFDVVILDPPAFVQHEKDLKPGMRAYFNVNFAGL 322
++ K ++I V F+ ++ +D +++DPP+F +++K + Y + L
Sbjct: 260 SIDPKSQYIYVMDTFDFYNYARRHDLFYDTIVIDPPSFSRNKKKTFSVQKDYDKLILGAL 319
Query: 323 NLVKDGGIFVTCSCSQHVDLQMFKDMI 349
+++ G + C+ + L+ FK+++
Sbjct: 320 DILGPDGTLLLCTNNSAFSLKAFKNVV 346
>pir||D81090 conserved hypothetical protein NMB1367 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226613|gb|AAF41741.1| (AE002485) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 354
Score = 83.9 bits (204), Expect = 3e-15
Identities = 49/150 (32%), Positives = 84/150 (55%), Gaps = 5/150 (3%)
Query: 158 RSRRREGLPEIERVLLGKEKYRTIIEEGKAKFIVDM-RGQKTGFFLDQRENRLALEKWIN 216
R R++GL + E+ GK +I E KF V++ + TG FLD R R + +
Sbjct: 132 RRERQKGLQQYEKT--GKAGDDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETA- 188
Query: 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLNGVE-DKIKFIVGS 275
G R L++F+YTG F ++AA GA +D S ++ AK N +LNG++ ++ K +
Sbjct: 189 AGKRFLNLFSYTGSFTVYAATGGAASSETVDLSNTYLDWAKRNFELNGIDTERHKIVRAD 248
Query: 276 AFEEMEKLQKKGEKFDVVILDPPAFVQHEK 305
F+ ++ +G +FD++++DPP+F +K
Sbjct: 249 VFQYLQTAYGEGRRFDLIVMDPPSFSNSKK 278
>pir||F81850 conserved hypothetical protein NMA1579 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380220|emb|CAB84806.1| (AL162756) conserved
hypothetical protein [Neisseria meningitidis Z2491]
Length = 315
Score = 83.1 bits (202), Expect = 5e-15
Identities = 62/201 (30%), Positives = 102/201 (49%), Gaps = 14/201 (6%)
Query: 114 VDRFNDIASLQISSAGM----ERFKLDVAEAIMEVEPEIETVFEKNTGRSRRRE---GLP 166
VD + D LQ G E ++ +AE + V T F R +RRE GL
Sbjct: 44 VDVYGDQIHLQEYDTGWLMRSEEYEAWLAEVLEAVA--FVTGFAPEQIRLKRRERQKGLQ 101
Query: 167 EIERVLLGKEKYRTIIEEGKAKFIVDM-RGQKTGFFLDQRENRLALEKWINPGDRVLDVF 225
+ E+ GK +I E KF V++ + TG FLD R R + + G R L++F
Sbjct: 102 QYEKT--GKAGDDFVITENGRKFWVNLDKYLDTGLFLDHRNTRKKVGETA-AGKRFLNLF 158
Query: 226 TYTGGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLNGVE-DKIKFIVGSAFEEMEKLQ 284
+YTG F ++AA GA +D S ++ A+ N +LNG++ ++ K + F+ ++
Sbjct: 159 SYTGSFTVYAATGGAASSETVDLSNTYLDWARRNFELNGIDTERHKIVRADVFQYLQTAY 218
Query: 285 KKGEKFDVVILDPPAFVQHEK 305
+G +FD++++DPP+F +K
Sbjct: 219 GEGRQFDLIVMDPPSFSNSKK 239
>pir||D75349 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459607|gb|AAF11383.1|AE002023_5 (AE002023)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 319
Score = 78.8 bits (191), Expect = 1e-13
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 180 TIIEEGKAKFIVDMRGQKTGFFLDQRENRLALEKWIN---PGDRVLDVFTYTGGFAIHAA 236
T +EEG I G F D R R +W+ G RVL+ F YT GF ++AA
Sbjct: 113 TALEEGVPFLIRPGADLSVGLFSDARPAR----RWVRGHAAGQRVLNTFAYTCGFGLNAA 168
Query: 237 IAGADEVIAIDKSPRAIETAKENAKLNGV-EDKIKFIVGSAFEEMEKLQKKGEKFDVVIL 295
+AGA V +D S + + ++N L+G+ F+ G FE + +LQ++G+ FD+VIL
Sbjct: 169 LAGAASVKNVDLSRKVLGWGQQNYALSGLAAPDHDFLYGDVFEWLTRLQRRGDLFDLVIL 228
Query: 296 DPPAFVQ 302
DPP F +
Sbjct: 229 DPPGFAR 235
>pir||F83469 hypothetical protein PA1407 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947354|gb|AAG04796.1|AE004570_4
(AE004570) hypothetical protein [Pseudomonas aeruginosa]
Length = 313
Score = 75.7 bits (183), Expect = 9e-13
Identities = 46/125 (36%), Positives = 74/125 (58%), Gaps = 11/125 (8%)
Query: 181 IIEEGKAKFIVDM-RGQKTGFFLDQRENRLALEKWINP---GDRVLDVFTYTGGFAIHAA 236
I+E G +F +D+ R Q TG FLD R R +W+ G RVL++F YT GF++ A
Sbjct: 112 IVENG-LRFRLDLGRNQNTGLFLDMRLGR----RWVQEQAAGRRVLNLFAYTCGFSVAAI 166
Query: 237 IAGADEVIAIDKSPRAIETAKENAKLNGVE-DKIKFIVGSAFEEMEKLQKKGEKFDVVIL 295
GA +V+ +D + + ++N +LNG + ++ F+ F+ KL+K G +D+VI+
Sbjct: 167 AGGASQVVNLDMARGPLNRGRDNHRLNGHDLGRVSFLGHELFKSWGKLRKLG-PYDLVIV 225
Query: 296 DPPAF 300
DPP+F
Sbjct: 226 DPPSF 230
>pir||A83266 conserved hypothetical protein PA3048 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949153|gb|AAG06436.1|AE004729_10 (AE004729)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 725
Score = 71.8 bits (173), Expect = 1e-11
Identities = 46/144 (31%), Positives = 74/144 (50%), Gaps = 7/144 (4%)
Query: 158 RSRRREGLPEIERVLLGKEKYRTIIEEGKAKFIVDMRGQ-KTGFFLDQRENRLALEKWIN 216
R R+ G + ER E + EG + +V++ TG FLD R RL ++K
Sbjct: 507 RRERQAGKKQYERQ--SSEGKFLEVGEGDVRLLVNLTDYLDTGLFLDHRPMRLRIQKEA- 563
Query: 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVGSA 276
G R L++F YT +HAA GA ++D S ++ A+ N LNG DK + + G
Sbjct: 564 AGKRFLNLFCYTATATVHAARGGARSTTSVDLSKTYLDWARRNLSLNGFSDKQRLVHG-- 621
Query: 277 FEEMEKLQKKGEKFDVVILDPPAF 300
+ ME L++ +++++ +DPP F
Sbjct: 622 -DVMEWLREDDGQYELIFIDPPTF 644
>pir||B64143 hypothetical protein HI0115 - Haemophilus influenzae (strain Rd
KW20)
Length = 545
Score = 70.6 bits (170), Expect = 3e-11
Identities = 64/252 (25%), Positives = 121/252 (47%), Gaps = 25/252 (9%)
Query: 65 VTKDKDVEINK---------DLFKERIKKANEYRKKVLKYTNVYRMVYGEADYLP--GLI 113
+T +K++E N+ + ++ IKK +++ K+ + + YR+ +AD LP L
Sbjct: 220 ITDEKELEFNRTSEVAPDFANRLQKNIKKISKWAKQ--QELDAYRLY--DAD-LPEYNLA 274
Query: 114 VDRFNDIASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGR-----SRRREGLPEI 168
VDR+ D +Q +A + + +++ V T + ++++G +
Sbjct: 275 VDRYADYIVVQEYAAPKNIDENKARQRLLDAVTATLQVTGVETNKLILKVRQKQKGTNQY 334
Query: 169 ERVLLGKEKYRTIIEEGKAKFIVDMRGQKTGFFLDQRENRLALEKWINPGDRVLDVFTYT 228
E+ L K +Y + E G ++ TG FLD R R + + + G L++F YT
Sbjct: 335 EK-LANKGEYFYVNEYGTQLWVNLTDYLDTGLFLDHRLTRKMIGE-LAKGKDFLNLFAYT 392
Query: 229 GGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVGSAFEEMEKLQKKGE 288
G +HAA+ GA +D S + A++N LN +E K ++ + + ++ L+K
Sbjct: 393 GSATVHAALGGAKSTTTVDMSNTYLNWAEQNLILNDIEGKQHKLIQA--DCLQWLEKCDR 450
Query: 289 KFDVVILDPPAF 300
+FD++ DPP F
Sbjct: 451 QFDLIFADPPTF 462
>sp|P44524|YCBY_HAEIN HYPOTHETICAL PROTEIN HI0116
Length = 711
Score = 70.6 bits (170), Expect = 3e-11
Identities = 64/252 (25%), Positives = 121/252 (47%), Gaps = 25/252 (9%)
Query: 65 VTKDKDVEINK---------DLFKERIKKANEYRKKVLKYTNVYRMVYGEADYLP--GLI 113
+T +K++E N+ + ++ IKK +++ K+ + + YR+ +AD LP L
Sbjct: 386 ITDEKELEFNRTSEVAPDFANRLQKNIKKISKWAKQ--QELDAYRLY--DAD-LPEYNLA 440
Query: 114 VDRFNDIASLQISSAGMERFKLDVAEAIMEVEPEIETVFEKNTGR-----SRRREGLPEI 168
VDR+ D +Q +A + + +++ V T + ++++G +
Sbjct: 441 VDRYADYIVVQEYAAPKNIDENKARQRLLDAVTATLQVTGVETNKLILKVRQKQKGTNQY 500
Query: 169 ERVLLGKEKYRTIIEEGKAKFIVDMRGQKTGFFLDQRENRLALEKWINPGDRVLDVFTYT 228
E+ L K +Y + E G ++ TG FLD R R + + + G L++F YT
Sbjct: 501 EK-LANKGEYFYVNEYGTQLWVNLTDYLDTGLFLDHRLTRKMIGE-LAKGKDFLNLFAYT 558
Query: 229 GGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVGSAFEEMEKLQKKGE 288
G +HAA+ GA +D S + A++N LN +E K ++ + + ++ L+K
Sbjct: 559 GSATVHAALGGAKSTTTVDMSNTYLNWAEQNLILNDIEGKQHKLIQA--DCLQWLEKCDR 616
Query: 289 KFDVVILDPPAF 300
+FD++ DPP F
Sbjct: 617 QFDLIFADPPTF 628
>sp|P75864|YCBY_ECOLI HYPOTHETICAL 78.9 KDA PROTEIN IN PYRD-PQIA INTERGENIC REGION
>gi|7466130|pir||C64835 hypothetical protein b0948 -
Escherichia coli >gi|1787181|gb|AAC74034.1| (AE000197)
putative oxidoreductase [Escherichia coli K12]
>gi|4062515|dbj|BAA35703.1| (D90732) Hypothetical
protein HI0115 [Escherichia coli]
>gi|4062518|dbj|BAA35706.1| (D90733) Hypothetical
protein HI0115 [Escherichia coli]
Length = 702
Score = 69.5 bits (167), Expect = 6e-11
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 17/163 (10%)
Query: 174 GKEKYRTIIEEGKAKFIVDMRGQ---------KTGFFLDQRENRLALEKWINPGDRVLDV 224
GK +Y+ + E+G+ + + TG FLD R R L + ++ G L++
Sbjct: 487 GKNQYQKLGEKGEFLEVTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQ-MSKGKDFLNL 545
Query: 225 FTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLNGVEDKIKFIVGSAFEEMEKLQ 284
F+YTG +HA + GA +D S +E A+ N +LNG+ + ++ + + + L+
Sbjct: 546 FSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQA--DCLAWLR 603
Query: 285 KKGEKFDVVILDPPAFVQHEKDLKPGMRAYFNVNFAGLNLVKD 327
+ E+FD++ +DPP F ++ M F+V L L+KD
Sbjct: 604 EANEQFDLIFIDPPTFSNSKR-----MEDAFDVQRDHLALMKD 641
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144072874
Number of Sequences: 2977
Number of extensions: 6305572
Number of successful extensions: 23532
Number of sequences better than 1.0e-10: 25
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 23440
Number of HSP's gapped (non-prelim): 25
length of query: 396
length of database: 189,106,746
effective HSP length: 57
effective length of query: 339
effective length of database: 154,992,987
effective search space: 52542622593
effective search space used: 52542622593
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)