BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1238 1672649 1672323 -109 !not a gene!
         (109 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71205 hypothetical protein PH1913 - Pyrococcus horikoshii ...   141  2e-33

>pir||G71205 hypothetical protein PH1913 - Pyrococcus horikoshii
           >gi|3258355|dbj|BAA31038.1| (AP000007) 144aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 144
           
 Score =  141 bits (353), Expect = 2e-33
 Identities = 74/98 (75%), Positives = 80/98 (81%)

Query: 12  IVAVNGMLSIIALRNAETQDIINIASFSELMWLTIHLPTSSINPVSTSPPTIMKRPPKKN 71
           +VAV G+LSIIAL NAE QDI +IASFSE+M LTIH P SSINPVSTSPPT+MK PPKKN
Sbjct: 1   MVAVKGILSIIALENAEIQDIKSIASFSEVMCLTIHFPASSINPVSTSPPTMMKSPPKKN 60

Query: 72  NVAHSTFSNATSGGTLLHRSKMEAPVRATTAGSIPIVS 109
            VAHSTFS ATSG TLL  + M APV ATTAGSIP  S
Sbjct: 61  RVAHSTFSRATSGETLLQSNNMVAPVSATTAGSIPRAS 98


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.130    0.367 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40129914
Number of Sequences: 2977
Number of extensions: 1435419
Number of successful extensions: 4605
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4604
Number of HSP's gapped (non-prelim): 1
length of query: 109
length of database: 189,106,746
effective HSP length: 56
effective length of query: 53
effective length of database: 155,591,474
effective search space: 8246348122
effective search space used: 8246348122
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 159 (66.3 bits)