BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1240 (PAB1240) DE:Hypothetical protein
(102 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75018 hypothetical protein PAB1240 - Pyrococcus abyssi (st... 196 5e-50
pir||F71204 hypothetical protein PH1904 - Pyrococcus horikoshii ... 159 5e-39
sp|O27255|YB87_METTH HYPOTHETICAL PROTEIN MTH1187 >gi|7450729|pi... 87 3e-17
dbj|BAB05156.1| (AP001512) unknown conserved protein [Bacillus h... 84 3e-16
sp|Q56200|DGLA_STAXY HYPOTHETICAL 12.1 KD PROTEIN IN GLKA 3'REGI... 78 2e-14
gi|11498179 conserved hypothetical protein [Archaeoglobus fulgid... 75 3e-13
pir||C70477 conserved hypothetical protein aq_2067 - Aquifex aeo... 74 3e-13
sp|Q58452|YA52_METJA HYPOTHETICAL PROTEIN MJ1052 >gi|2128645|pir... 71 3e-12
>pir||D75018 hypothetical protein PAB1240 - Pyrococcus abyssi (strain Orsay)
>gi|5459100|emb|CAB50586.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 102
Score = 196 bits (493), Expect = 5e-50
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MSVIIEFSIVPLGEVSVSKYVAKVIDLLRERGIKYQLTPMGTIIEVKSLGEGLEIIREAH 60
MSVIIEFSIVPLGEVSVSKYVAKVIDLLRERGIKYQLTPMGTIIEVKSLGEGLEIIREAH
Sbjct: 1 MSVIIEFSIVPLGEVSVSKYVAKVIDLLRERGIKYQLTPMGTIIEVKSLGEGLEIIREAH 60
Query: 61 ELMFTFGFKRVLTTIRIDERRDKERSMEDKVKSVLEKLEVEA 102
ELMFTFGFKRVLTTIRIDERRDKERSMEDKVKSVLEKLEVEA
Sbjct: 61 ELMFTFGFKRVLTTIRIDERRDKERSMEDKVKSVLEKLEVEA 102
>pir||F71204 hypothetical protein PH1904 - Pyrococcus horikoshii
>gi|3258346|dbj|BAA31029.1| (AP000007) 106aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 106
Score = 159 bits (399), Expect = 5e-39
Identities = 78/99 (78%), Positives = 91/99 (91%)
Query: 1 MSVIIEFSIVPLGEVSVSKYVAKVIDLLRERGIKYQLTPMGTIIEVKSLGEGLEIIREAH 60
MSVIIEFSIVP+GEVS+SKYVA++I L+R+RG+KYQLTPMGTI+EV S+ EGL IIR+AH
Sbjct: 4 MSVIIEFSIVPMGEVSISKYVAEIIKLVRDRGVKYQLTPMGTILEVNSIEEGLSIIRDAH 63
Query: 61 ELMFTFGFKRVLTTIRIDERRDKERSMEDKVKSVLEKLE 99
ELMF G KRVLTTIRIDERRDK R+MEDKVKSV+EK+E
Sbjct: 64 ELMFKLGSKRVLTTIRIDERRDKARTMEDKVKSVMEKVE 102
>sp|O27255|YB87_METTH HYPOTHETICAL PROTEIN MTH1187 >gi|7450729|pir||C69025 conserved
hypothetical protein MTH1187 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622295|gb|AAB85676.1| (AE000887) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 99
Score = 87.4 bits (213), Expect = 3e-17
Identities = 39/98 (39%), Positives = 67/98 (67%), Gaps = 2/98 (2%)
Query: 3 VIIEFSIVPLG--EVSVSKYVAKVIDLLRERGIKYQLTPMGTIIEVKSLGEGLEIIREAH 60
+ E +++PLG S+S YVA ++ L++ ++Y+++ MGT++E + L E +E ++ AH
Sbjct: 2 ITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAH 61
Query: 61 ELMFTFGFKRVLTTIRIDERRDKERSMEDKVKSVLEKL 98
E + G RV TT++ID+RRD +R + DKV+SV EK+
Sbjct: 62 EAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI 99
>dbj|BAB05156.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 358
Score = 84.3 bits (205), Expect = 3e-16
Identities = 47/100 (47%), Positives = 70/100 (70%), Gaps = 5/100 (5%)
Query: 4 IIEFSIVPLGEV--SVSKYVAKVIDLLR--ERGIKYQLTPMGTIIEVKSLGEGLEIIREA 59
I++ +++P+G SVS YVA++ +L+ E ++Y+LTPM T+IE + L E+I+
Sbjct: 254 IVDVTVIPIGTETPSVSAYVAEIHQVLKTYEDKVRYELTPMSTLIEGE-LPILFEVIQAI 312
Query: 60 HELMFTFGFKRVLTTIRIDERRDKERSMEDKVKSVLEKLE 99
HE+ F G KRV T IRID+RRD +R ME+KV++V EKLE
Sbjct: 313 HEVPFQHGIKRVATNIRIDDRRDVQRKMEEKVEAVREKLE 352
>sp|Q56200|DGLA_STAXY HYPOTHETICAL 12.1 KD PROTEIN IN GLKA 3'REGION (ORF2)
>gi|1226043|emb|CAA59071.1| (X84332) orf2 downstream of
glucose kinase [Staphylococcus xylosus]
Length = 107
Score = 78.0 bits (189), Expect = 2e-14
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 7/97 (7%)
Query: 4 IIEFSIVPLGE--VSVSKYVAKVIDLLRERG----IKYQLTPMGTIIEVKSLGEGLEIIR 57
I++ ++P+G SVSKY+A++ L+E I YQLTPM T+IE L + E+++
Sbjct: 3 IVDVVVIPVGTDGPSVSKYIAEIQTKLKEYKAQGKIDYQLTPMNTLIE-GDLKDLFEVVQ 61
Query: 58 EAHELMFTFGFKRVLTTIRIDERRDKERSMEDKVKSV 94
HEL F G RV T IRID+RRDK R+M +KVK+V
Sbjct: 62 AIHELPFDKGLSRVCTNIRIDDRRDKSRNMNEKVKAV 98
>gi|11498179 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450730|pir||C69321 conserved hypothetical protein
AF0571 - Archaeoglobus fulgidus
>gi|2650052|gb|AAB90668.1| (AE001065) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 97
Score = 74.5 bits (180), Expect = 3e-13
Identities = 43/98 (43%), Positives = 61/98 (61%), Gaps = 2/98 (2%)
Query: 3 VIIEFSIVPLGE-VSVSKYVAKVIDLLRERGIKYQLTPMGTIIEVKSLGEGLEIIREAHE 61
+I+E S VP+G S+S +VA+VI++L+E G+ Y L PMGT EV++ G EI+ +
Sbjct: 1 MIVEISAVPIGVGESLSSFVARVIEVLKEEGVNYSLGPMGTSFEVENFGRLAEILEKVDR 60
Query: 62 LMFTFGFKRVLTTIRIDERRDKERSMEDKVKSVLEKLE 99
+F G R I+ID R K M DKVK+V EKL+
Sbjct: 61 ALFEAGSPRNYYVIKIDNRA-KGGRMADKVKAVEEKLK 97
>pir||C70477 conserved hypothetical protein aq_2067 - Aquifex aeolicus
>gi|2984298|gb|AAC07822.1| (AE000771) hypothetical
protein [Aquifex aeolicus]
Length = 157
Score = 74.1 bits (179), Expect = 3e-13
Identities = 41/99 (41%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Query: 1 MSVIIEFSIVPLGE-VSVSKYVAKVIDLLRERGIKYQLTPMGTIIEVKSLGEGLEIIREA 59
MS ++ S+ PLG+ SVS+YVA+V+D++ + G+ Y LTPMGTIIE + E +E++++
Sbjct: 46 MSFLVFVSMTPLGKGESVSQYVARVVDIIDKSGLPYVLTPMGTIIEGEDWDEVMEVLKKG 105
Query: 60 HELMFTFGFKRVLTTIRIDERRDKERSMEDKVKSVLEKL 98
E + R+ T++ID R+ K+ + KVKSV EK+
Sbjct: 106 FEAL-KEDCNRISITMKIDYRKGKKGRLIQKVKSVQEKI 143
>sp|Q58452|YA52_METJA HYPOTHETICAL PROTEIN MJ1052 >gi|2128645|pir||C64431 conserved
hypothetical protein MJ1052 - Methanococcus jannaschii
>gi|1591705|gb|AAB99055.1| (U67548) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 100
Score = 71.0 bits (171), Expect = 3e-12
Identities = 39/95 (41%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 3 VIIEFSIVPLGE-VSVSKYVAKVIDLLRERGIKYQLTPMGTIIEVKSLGEGLEIIREAHE 61
V+ E SI+PLG+ SVSKYV K I++ ++ +K + MGT++E L E L+ +EAH
Sbjct: 7 VVAEVSIIPLGKGASVSKYVKKAIEVFKKYDLKVETNAMGTVLE-GDLDEILKAFKEAHS 65
Query: 62 LMFTFGFKRVLTTIRIDERRDKERSMEDKVKSVLE 96
+ RV+++++IDER+DKE ++E K+K++ E
Sbjct: 66 TVLN-DVDRVVSSLKIDERKDKENTIERKLKAIGE 99
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.362
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30624947
Number of Sequences: 2977
Number of extensions: 1077013
Number of successful extensions: 3385
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3375
Number of HSP's gapped (non-prelim): 8
length of query: 102
length of database: 189,106,746
effective HSP length: 57
effective length of query: 45
effective length of database: 154,992,987
effective search space: 6974684415
effective search space used: 6974684415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 158 (66.0 bits)