BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1241 (PAB1241) DE:Hypothetical protein
(374 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75018 hypothetical protein PAB1241 - Pyrococcus abyssi (st... 728 0.0
pir||E71204 hypothetical protein PH1903 - Pyrococcus horikoshii ... 645 0.0
gi|11499640 conserved hypothetical protein [Archaeoglobus fulgid... 188 8e-47
emb|CAC12550.1| (AL445067) conserved hypothetical protein [Therm... 178 7e-44
gb|AAG20291.1| (AE005103) Vng2154c [Halobacterium sp. NRC-1] 156 4e-37
gb|AAK41223.1| Conserved hypothetical protein [Sulfolobus solfat... 151 1e-35
sp|Q58438|YA32_METJA HYPOTHETICAL PROTEIN MJ1032 >gi|2128640|pir... 141 1e-32
pir||E72668 hypothetical protein APE0771 - Aeropyrum pernix (str... 120 2e-26
gb|AAG18949.1| (AE004996) Vng0393c [Halobacterium sp. NRC-1] 108 1e-22
>pir||C75018 hypothetical protein PAB1241 - Pyrococcus abyssi (strain Orsay)
>gi|5459099|emb|CAB50585.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 374
Score = 728 bits (1859), Expect = 0.0
Identities = 374/374 (100%), Positives = 374/374 (100%)
Query: 1 MKILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDEL 60
MKILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDEL
Sbjct: 1 MKILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDEL 60
Query: 61 KKKGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKFPADGVIPVTDGAEDEQIFPII 120
KKKGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKFPADGVIPVTDGAEDEQIFPII
Sbjct: 61 KKKGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKFPADGVIPVTDGAEDEQIFPII 120
Query: 121 TSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKI 180
TSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKI
Sbjct: 121 TSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKI 180
Query: 181 ISIKYPPSAQIVSSTVTGVVMLIVGGYFFSKGFRLKPITSLVRIVSRGLITFIGVVTGFI 240
ISIKYPPSAQIVSSTVTGVVMLIVGGYFFSKGFRLKPITSLVRIVSRGLITFIGVVTGFI
Sbjct: 181 ISIKYPPSAQIVSSTVTGVVMLIVGGYFFSKGFRLKPITSLVRIVSRGLITFIGVVTGFI 240
Query: 241 VMLGGAINVYLTLESIAENMIGGIPTSELIAFLIYLNAFNKYFILGLGIMISGKIIQEYL 300
VMLGGAINVYLTLESIAENMIGGIPTSELIAFLIYLNAFNKYFILGLGIMISGKIIQEYL
Sbjct: 241 VMLGGAINVYLTLESIAENMIGGIPTSELIAFLIYLNAFNKYFILGLGIMISGKIIQEYL 300
Query: 301 RRDPHIWYYIASFLMLPAFWKVIDLMTIYSNPLIKKSPETLIAGVLLVLIDLTLSIIISI 360
RRDPHIWYYIASFLMLPAFWKVIDLMTIYSNPLIKKSPETLIAGVLLVLIDLTLSIIISI
Sbjct: 301 RRDPHIWYYIASFLMLPAFWKVIDLMTIYSNPLIKKSPETLIAGVLLVLIDLTLSIIISI 360
Query: 361 KLREEVKKWSSASS 374
KLREEVKKWSSASS
Sbjct: 361 KLREEVKKWSSASS 374
>pir||E71204 hypothetical protein PH1903 - Pyrococcus horikoshii
>gi|3258345|dbj|BAA31028.1| (AP000007) 368aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 368
Score = 645 bits (1645), Expect = 0.0
Identities = 321/367 (87%), Positives = 352/367 (95%)
Query: 1 MKILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDEL 60
MK+LVLAIDRDDDFGVKAGV GPVIGRD CLDAAVKLSLADPEDSDAN+LFAAIKLYDEL
Sbjct: 1 MKVLVLAIDRDDDFGVKAGVSGPVIGRDKCLDAAVKLSLADPEDSDANSLFAAIKLYDEL 60
Query: 61 KKKGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKFPADGVIPVTDGAEDEQIFPII 120
K+ G+F++VEVALITG NVGVESDL LS+QLD+VLK+FPADGVIPVTDGAEDEQIFPII
Sbjct: 61 KESGKFEDVEVALITGSHNVGVESDLELSRQLDKVLKEFPADGVIPVTDGAEDEQIFPII 120
Query: 121 TSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKI 180
TSKVPI+STRRVVVKQSPGIETTWYIIVRYLKE++SDPEVSKVVLGIPGLIVLLYGIAKI
Sbjct: 121 TSKVPILSTRRVVVKQSPGIETTWYIIVRYLKELLSDPEVSKVVLGIPGLIVLLYGIAKI 180
Query: 181 ISIKYPPSAQIVSSTVTGVVMLIVGGYFFSKGFRLKPITSLVRIVSRGLITFIGVVTGFI 240
+SIKYPPSAQIVSSTVTG++MLIVGGYFF+KGFR+KPITSLVRIVSRGLITFIGVVTGFI
Sbjct: 181 VSIKYPPSAQIVSSTVTGLIMLIVGGYFFAKGFRIKPITSLVRIVSRGLITFIGVVTGFI 240
Query: 241 VMLGGAINVYLTLESIAENMIGGIPTSELIAFLIYLNAFNKYFILGLGIMISGKIIQEYL 300
VMLGGAINVYLTLESIAE MIGGIPTSELIA LIYLNA NKYFILGLGIMI+GKIIQEYL
Sbjct: 241 VMLGGAINVYLTLESIAEKMIGGIPTSELIALLIYLNAVNKYFILGLGIMIAGKIIQEYL 300
Query: 301 RRDPHIWYYIASFLMLPAFWKVIDLMTIYSNPLIKKSPETLIAGVLLVLIDLTLSIIISI 360
RR+PH+WYYIASFLMLPAFWKVIDL+T+YSNPL+KK+ L+ G+ LV+ID+ +SIIISI
Sbjct: 301 RRNPHLWYYIASFLMLPAFWKVIDLITLYSNPLVKKTSGELVGGISLVVIDILISIIISI 360
Query: 361 KLREEVK 367
KLRE+V+
Sbjct: 361 KLREKVR 367
>gi|11499640 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3123133|sp|O28221|YK58_ARCFU HYPOTHETICAL PROTEIN
AF2058 >gi|7483201|pir||A69507 conserved hypothetical
protein AF2058 - Archaeoglobus fulgidus
>gi|2648473|gb|AAB89193.1| (AE000961) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 344
Score = 188 bits (473), Expect = 8e-47
Identities = 125/356 (35%), Positives = 201/356 (56%), Gaps = 34/356 (9%)
Query: 2 KILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDELK 61
K LVL IDRDDD G KAG+ PVIGRD+ + AAV+L ADPEDSD N +FAAIK+YDELK
Sbjct: 3 KKLVLVIDRDDDLGQKAGISSPVIGRDNIVSAAVRLGTADPEDSDVNAMFAAIKIYDELK 62
Query: 62 KKGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKFPADGVIPVTDGAEDEQIFPIIT 121
+GE +VEV ++ G +VGV SD ++++QLD V+ I VTDG+EDE + PII+
Sbjct: 63 GRGE--DVEVVVVCGDRSVGVVSDSKIAEQLDRVVLNLRPSSAIVVTDGSEDEFVLPIIS 120
Query: 122 SKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKII 181
S+V I S RVVV+QS IE+T+++I + M++DP+++++ L G+I L+Y I +
Sbjct: 121 SRVKIDSVHRVVVRQSRTIESTYFLI----RRMLNDPKIARITLAPLGMIFLVYSI--FL 174
Query: 182 SIKYPPSAQIVSSTVTGVVMLIVGGYFFSKGF----RLKPITSLVRI-VSRGLITFIGVV 236
+++P G ++ +G YF K + + + VR+ + G ++FI V
Sbjct: 175 VMQHPEWG-------LGGIIFFLGVYFMVKAYGWEQNIANLLETVRVSLVEGRLSFIFYV 227
Query: 237 TGFIVMLGGAINVYLTLESIAENMIGGIPTSELIAFLIYLNAFNKYFILGLGIMISGKII 296
T I+++ +N + +IA+ ++ I+ I+ + + +F+L + +
Sbjct: 228 TSAILLIISIVNGFNAAVNIAD-------AAQAISSFIFYSTW--WFVLSGIFALLARAA 278
Query: 297 QEYLRRDPHIWYYIASFLMLPAFWKVIDLMTIY-SNPLIKKSPETL---IAGVLLV 348
Y + Y+ FL++ AF ++ Y NP + + L I G +L+
Sbjct: 279 DAYAEKRRVSKYFTIIFLLI-AFGLIVWASAAYVLNPEAPNALQNLAGAIVGAILI 333
>emb|CAC12550.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 373
Score = 178 bits (448), Expect = 7e-44
Identities = 118/324 (36%), Positives = 185/324 (56%), Gaps = 33/324 (10%)
Query: 1 MKILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDEL 60
M L++ +DRD+DFG KAGVKGPV+G C +AAV+L DPEDSD+N LF A+K+Y++L
Sbjct: 1 MTTLIINVDRDNDFGDKAGVKGPVVGYTECYNAAVRLISVDPEDSDSNALFGALKVYEDL 60
Query: 61 KKKGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKFPADGVIPVTDGAEDEQIFPII 120
+KKGE +VE+AL+TG +VG +SD LSKQ+ +V+ I V+DGAED+ I P+I
Sbjct: 61 RKKGE--DVEIALLTGDNDVGEKSDEILSKQIADVVGSGLYTDAILVSDGAEDDYIVPVI 118
Query: 121 TSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKI 180
S + I + ++V+ + IE+ +Y IVR LK+ +SK+++ + GL+ L YG+ +
Sbjct: 119 LSYIKIRYVKHIIVRHNENIESLYYYIVRALKDKKI---LSKILIPL-GLVFLTYGLVSL 174
Query: 181 ISI---KYPPSAQIVSSTVTGV--VMLIVGGYFFSKGFRL-KPITSLVRIV-----SRGL 229
I I Y +I+ TV + V L++G Y +GF L + L+R V +
Sbjct: 175 IFILYSAYVTGVRIIDPTVGAITFVTLVLGAYLLERGFDLFNLMARLIREVHEYAQDTRI 234
Query: 230 ITFIGVVTGFIVMLGGAINVYLTLESIAENMIGGIPTSE--LIAFLIYLNAFNKYFILGL 287
+ F V+ G +V++G IA + + TS+ L AFL++L+ F + +
Sbjct: 235 LFFTYVIAGLLVLVG-----------IASSYTIAVHTSKNGLDAFLVFLSLFTWWVYGSI 283
Query: 288 GIMISGKIIQEYLRRDP---HIWY 308
G++ + + R IWY
Sbjct: 284 FTTEVGRVAELAVGRKAGILKIWY 307
>gb|AAG20291.1| (AE005103) Vng2154c [Halobacterium sp. NRC-1]
Length = 361
Score = 156 bits (390), Expect = 4e-37
Identities = 121/374 (32%), Positives = 194/374 (51%), Gaps = 27/374 (7%)
Query: 3 ILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDELKK 62
+LVL +D DDD G K GV PV+GR+ AAV L+ ADPEDSD N LF + L+D +
Sbjct: 2 LLVLCVDLDDDLGRKTGVPTPVVGRNDVEHAAVSLAEADPEDSDVNVLFEGVHLHD---R 58
Query: 63 KGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKF-PADGV--IPVTDGAEDEQIFPI 119
+ ++V VA +TG V ++ + +++DEVL P D V + VTDGA+DE + P+
Sbjct: 59 YSDDEDVVVAAVTGVDRGDVAANRAVGREVDEVLASLSPTDPVRAVVVTDGAQDESVVPV 118
Query: 120 ITSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAK 179
I S+VPI + +RVVV+Q+ +E+ +Y LK++M+DPE +L G+++L+Y +A
Sbjct: 119 IRSRVPIEALKRVVVRQAQDLESMYYT----LKQVMNDPETRGTILVPLGILLLIYPLAV 174
Query: 180 IISIKYPPSAQIVSSTVTGVVMLIVGGYFFSKGFRLK-----PITSLVRIVSRGLITFIG 234
+ + P A V GV VG Y +G L+ + L + G +T I
Sbjct: 175 LADVLGLPGA------VLGVSSAAVGLYALFRGLGLERVADDAVNRLRDGLYTGRVTLIT 228
Query: 235 VVTGFIVMLGGAINVYLTLESIAENMIGGIPTSELIAFLIYLNAFNKYFILGLGIMISGK 294
V +++ G + L+++ + G + S ++A L Y A + GL + G+
Sbjct: 229 YVVAAALLVIGGVEGAARLDAVRAHADGALAPSTVVAALTY-GAVRWFAAAGLTTSL-GQ 286
Query: 295 IIQEYLRRDPHIWYYI-ASFLMLPAFWKVIDLMTIYSNPL-IKKSPETLIAGVLL-VLID 351
+ EYL D W Y+ A F +L + L + + + + L AG L+ VL
Sbjct: 287 VTDEYL-ADRFRWRYLNAPFYVLSIAAVLYTLSGFFLEYVTLTELAAVLTAGTLVSVLST 345
Query: 352 LTLSIIISIKLREE 365
L L+++ S + E
Sbjct: 346 LALAVVESWRATPE 359
>gb|AAK41223.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 355
Score = 151 bits (377), Expect = 1e-35
Identities = 102/373 (27%), Positives = 192/373 (51%), Gaps = 26/373 (6%)
Query: 1 MKILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDEL 60
+K +V+ +D DDD G G P+IG + C K + P DSD N++ A +Y +L
Sbjct: 2 VKTIVIYVDIDDDIG-DLGFSTPIIGEEKCKLTLDKAAYFMPTDSDFNSMVVAFNIYTDL 60
Query: 61 KKKGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKFPADGVIPVTDGAEDEQIFPII 120
K+KGE + E+ I+G G ES L SK+LD+V+++ + + V D +D + PII
Sbjct: 61 KRKGE--DTEIVFISGSKKGGTESQLEFSKKLDKVIEELSPEYAVVVYDSPDDARAIPII 118
Query: 121 TSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKI 180
S++ I + ++V+V+Q G+E T+ ++ +Y+++ +++ ++V LG+PG+I+ L GI
Sbjct: 119 QSRLKISAVQQVIVEQYRGVEETYMLLAKYIRKAVTEKRYARVFLGVPGIILALAGILAA 178
Query: 181 ISIKYPPSAQIVSSTVTGVVMLIVGGYFFSKGFRLKPITSLVRIVSRGLITFIGVVTGFI 240
+++ S + +++I+G KG ++ + + I I I
Sbjct: 179 LNL---------SVYIEPTILIILGVAMVIKGLKIDDL--IESWWENSTIMVITATVSII 227
Query: 241 VMLGGAINVYLTLESIAENMIGGIPTSELIAFLIYLNAFNKYFILGLGIMISGKIIQEYL 300
+L G IN+Y+ L+ ++ G+ + + AF+I Y I+ GK I + L
Sbjct: 228 SLLIGVINLYIQLQ-----IVRGLSSIQEFAFIIL--QILPYASFSAIILFGGKAISKGL 280
Query: 301 RRDPHIWYYIASFLMLPAFWKVIDLMT--IYSNPLIK--KSPETLI-AGVLLVLIDLTLS 355
RD +W+ I + + + ++ + I N I +S TLI A ++++ I +TL+
Sbjct: 281 NRDIRVWHDIIKIINIVIIYFILFTVVKDIIDNTYILTFQSLYTLILASIVIISIYITLT 340
Query: 356 IIISIKLREEVKK 368
+ + E++ K
Sbjct: 341 ALEKYGILEKLIK 353
>sp|Q58438|YA32_METJA HYPOTHETICAL PROTEIN MJ1032 >gi|2128640|pir||G64428 hypothetical
protein MJ1032 - Methanococcus jannaschii
>gi|1499875|gb|AAB99036.1| (U67546) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 366
Score = 141 bits (352), Expect = 1e-32
Identities = 108/365 (29%), Positives = 189/365 (51%), Gaps = 34/365 (9%)
Query: 4 LVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDELKKK 63
LVL +D DDD G KAG+ P++GR+ + A +KL LADP DSD N + +K+YDELK
Sbjct: 10 LVLVVDIDDDIGRKAGLNTPILGREENIKALIKLGLADPGDSDVNAILGGVKIYDELKAS 69
Query: 64 GEFDEVEVALITGHPNVGVESD---LRLSKQLDEVLKKFPADGVIPVTDGAEDEQIFPII 120
G+ +VE+A I+G +V VES+ LR+ +Q+D +L + D + V+DG EDE I +
Sbjct: 70 GK--DVEIATISG--DVDVESEKCALRIKEQIDFLLYLYNPDFIYLVSDGKEDEMILKYL 125
Query: 121 TSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKI 180
SK + +RV+VKQS +E+T+Y+I ++K+ M E ++L G ++LY I
Sbjct: 126 ESKNIFVWKKRVIVKQSETLESTYYLIQEFIKKTME--EYIPLILTFIGFSLILYAIFAD 183
Query: 181 ISIKYPPSAQIVSSTVTGVVMLIVGGYFFSKGFRLKPITSLVRIVSRGLITFIGVVTGFI 240
I + +V+ I+G Y S+G ++ + + +I + G +
Sbjct: 184 IGWR--------------IVVGIIGLYILSEGVGVRKLL-MEKIKKKEEFD-----VGRV 223
Query: 241 VMLGGAINVYLTLESIAENMIGGIPTSELIAFLI--YLNAFNKYFILGLGIMISGKIIQE 298
+ +I++++ + + ++ TS + I +L F L L I++ GK +
Sbjct: 224 FPISASISIFILIIGLIYSLSSINKTSSTLTEFIGEFLLHFVDSLTLSLLILMVGKFVDT 283
Query: 299 YLRRDPHIWYYIAS-FLMLPAFWKVIDLMTIYSNPLIKKSPETLIAGVLLVLIDLTLSII 357
+ + + + F L + +L+ L+KK + I V+ V+I +++ II
Sbjct: 284 IINSEKDLLEILKKYFFCLICIFISRELIISGGEYLLKKI--SFIMFVMCVIIYISIVII 341
Query: 358 ISIKL 362
+S+ L
Sbjct: 342 LSVIL 346
>pir||E72668 hypothetical protein APE0771 - Aeropyrum pernix (strain K1)
>gi|5104434|dbj|BAA79749.1| (AP000060) 396aa long
hypothetical protein [Aeropyrum pernix]
Length = 396
Score = 120 bits (299), Expect = 2e-26
Identities = 66/205 (32%), Positives = 121/205 (58%), Gaps = 6/205 (2%)
Query: 2 KILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDELK 61
+ LV+ +D DDD G G + ++G D L+AAV+ ++ P+D+DANT+FA ++LY +LK
Sbjct: 33 RALVIVVDLDDDVGETLG-ESVIVGYDRVLEAAVRFAIERPDDADANTMFAGLRLYRKLK 91
Query: 62 KKGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKFPAD-GVIPVTDGAEDEQIFPII 120
GE+ +VE+A++ G +GVE+ L +++ ++ + D + V DG E+ I+
Sbjct: 92 --GEYGDVEIAVVGGSRRLGVEAQRNLRERVASIVSEMGPDVDIYIVGDGGEEALASHIL 149
Query: 121 TSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKI 180
+ V+V Q GIE+ + +I +YL++ ++DP S +VLG+PGL++ + A +
Sbjct: 150 RGVGRVAGIESVIVSQHLGIESNYMLIAKYLRKAVTDPHYSTLVLGVPGLVISV--AALL 207
Query: 181 ISIKYPPSAQIVSSTVTGVVMLIVG 205
+ + A +S + G+ M++ G
Sbjct: 208 MLAGFFSLALKISLLIVGLAMVVYG 232
>gb|AAG18949.1| (AE004996) Vng0393c [Halobacterium sp. NRC-1]
Length = 382
Score = 108 bits (266), Expect = 1e-22
Identities = 72/305 (23%), Positives = 150/305 (48%), Gaps = 20/305 (6%)
Query: 1 MKILVLAIDRDDDFGVKAGVKGPVIGRDSCLDAAVKLSLADPEDSDANTLFAAIKLYDEL 60
M+ LV+ +DR D + G++ P+ G ++ + +ADPED+ N L A+++ +L
Sbjct: 1 MRTLVVCVDRAGDISRQTGLRTPIAGWEAVQSLVTDMGVADPEDASVNCLLEALRVTRDL 60
Query: 61 KKKGEFDEVEVALITGHPNVGVESDLRLSKQLDEVLKKFPADGVIPVTDGAEDEQIFPII 120
+ + V TG GV +D +++Q D ++ + D + V D A DE++ PI+
Sbjct: 61 RDGADDAVVAAVSATGD---GVTADRSVAQQFDSLVDRHDPDSCVVVVDSAADERVVPIV 117
Query: 121 TSKVPIISTRRVVVKQSPGIETTWYIIVRYLKEMMSDPEVSKVVLGIPGLIVLLYGIAKI 180
S++ + + RVVV+Q+ +E+T+Y+ LK+ ++D E+ + VL G+++L++ +
Sbjct: 118 ESRIQVDAVDRVVVRQARDLESTYYL----LKQFLADEELRQTVLVPVGIVLLVFPGLMM 173
Query: 181 ISIKYPPSAQIVSSTVTGVVMLIVGGYFFSKGFRLKPITSLVRIVSRGLITF--IGVVTG 238
++ S + ++++T ++G + KG + + + +R + + +VT
Sbjct: 174 VT----GSLAVAAASIT----TVIGLFLLYKGLGVDEYVAALPGQARDALYSGRVSIVTY 225
Query: 239 FIVMLGGAINVYLTLESIAENMIGGIPTSELIAFLIYLNAFNKYFILGLGIMISGKIIQE 298
+ G + V+ + G S L+A + + + LG G++ E
Sbjct: 226 VVAGGLGLVGVFAGALGLTNQAAG---LSRLVAAMTFTYYSIPWVTLGALTASGGRLFDE 282
Query: 299 YLRRD 303
Y+R D
Sbjct: 283 YIRND 287
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132614240
Number of Sequences: 2977
Number of extensions: 5495514
Number of successful extensions: 13355
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13333
Number of HSP's gapped (non-prelim): 10
length of query: 374
length of database: 189,106,746
effective HSP length: 56
effective length of query: 318
effective length of database: 155,591,474
effective search space: 49478088732
effective search space used: 49478088732
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)