BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1242 1662650 1662213 -146 !not a gene!
         (146 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71454 hypothetical protein PH0288 - Pyrococcus horikoshii ...    95  3e-19

>pir||A71454 hypothetical protein PH0288 - Pyrococcus horikoshii
           >gi|3256677|dbj|BAA29360.1| (AP000001) 110aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 110
           
 Score = 95.2 bits (233), Expect = 3e-19
 Identities = 54/107 (50%), Positives = 66/107 (61%), Gaps = 1/107 (0%)

Query: 41  PSIENMKLILLFPPPIAMISFFFMTFS-RNSSSRIAKAGVTITAFNAASPSPITRLTLSL 99
           P++ENM       PPI +IS FF      NSSS IA AGVT+TAF AASP+PIT+L L+L
Sbjct: 4   PNLENMNPNFPSSPPIDIISPFFPNILVLNSSSSIANAGVTMTAFTAASPNPITKLMLNL 63

Query: 100 LSDGRIEIDNAKNPAMVVRAAPSRALPVXXXXXXXXXXRDFPFPLSS 146
             +G IE ++A+ PA+VV AAPS A PV           D P  LSS
Sbjct: 64  FREGNIESESARKPAIVVNAAPSNAFPVSEIASSAASSGDLPLFLSS 110


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.137    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44617365
Number of Sequences: 2977
Number of extensions: 1510610
Number of successful extensions: 4904
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4902
Number of HSP's gapped (non-prelim): 1
length of query: 146
length of database: 189,106,746
effective HSP length: 56
effective length of query: 90
effective length of database: 155,591,474
effective search space: 14003232660
effective search space used: 14003232660
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)