BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1243 (PAB1243) DE:Hypothetical protein
         (171 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75017 hypothetical protein PAB1243 - Pyrococcus abyssi (st...   330  7e-90
pir||B71454 hypothetical protein PH0289 - Pyrococcus horikoshii ...   282  1e-75
sp|Q58958|YF63_METJA HYPOTHETICAL PROTEIN MJ1563 >gi|2128939|pir...    80  2e-14

>pir||H75017 hypothetical protein PAB1243 - Pyrococcus abyssi (strain Orsay)
           >gi|5459096|emb|CAB50582.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 171
           
 Score =  330 bits (836), Expect = 7e-90
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MSLEEAKRIIMETFANTARRLGQSELVGYIYGALFLANDPLSLSDIAEITGYSISHISSA 60
           MSLEEAKRIIMETFANTARRLGQSELVGYIYGALFLANDPLSLSDIAEITGYSISHISSA
Sbjct: 1   MSLEEAKRIIMETFANTARRLGQSELVGYIYGALFLANDPLSLSDIAEITGYSISHISSA 60

Query: 61  MKVLEGVGLVQRIKKPGDRRAYFVATKNFSEWRSSAFYEKILRDIDETKESIMRALEELE 120
           MKVLEGVGLVQRIKKPGDRRAYFVATKNFSEWRSSAFYEKILRDIDETKESIMRALEELE
Sbjct: 61  MKVLEGVGLVQRIKKPGDRRAYFVATKNFSEWRSSAFYEKILRDIDETKESIMRALEELE 120

Query: 121 GEQGSEVEEIKEKLKMALRRNEVARKLLTLIMQFKSEEELLKVLESCLKKE 171
           GEQGSEVEEIKEKLKMALRRNEVARKLLTLIMQFKSEEELLKVLESCLKKE
Sbjct: 121 GEQGSEVEEIKEKLKMALRRNEVARKLLTLIMQFKSEEELLKVLESCLKKE 171


>pir||B71454 hypothetical protein PH0289 - Pyrococcus horikoshii
           >gi|3256678|dbj|BAA29361.1| (AP000001) 169aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 169
           
 Score =  282 bits (714), Expect = 1e-75
 Identities = 138/169 (81%), Positives = 161/169 (94%)

Query: 1   MSLEEAKRIIMETFANTARRLGQSELVGYIYGALFLANDPLSLSDIAEITGYSISHISSA 60
           M ++EAK+IIMETFANTARRLGQSELVGYIYGALFL+  P+SL +IAEITGYS+SH+SSA
Sbjct: 1   MGIKEAKKIIMETFANTARRLGQSELVGYIYGALFLSGRPMSLGEIAEITGYSLSHVSSA 60

Query: 61  MKVLEGVGLVQRIKKPGDRRAYFVATKNFSEWRSSAFYEKILRDIDETKESIMRALEELE 120
           M+VLEGVGLVQR+KKPGDR+AYF+ATKNFSEWRSSAFYEKILRDIDET+E+++RAL+ELE
Sbjct: 61  MRVLEGVGLVQRVKKPGDRKAYFIATKNFSEWRSSAFYEKILRDIDETRENLLRALKELE 120

Query: 121 GEQGSEVEEIKEKLKMALRRNEVARKLLTLIMQFKSEEELLKVLESCLK 169
            E+GSEVEEIK+KL++AL+RNEVARKLLTLIMQF+SEEELL VLE C K
Sbjct: 121 HEKGSEVEEIKKKLEIALKRNEVARKLLTLIMQFRSEEELLHVLEKCSK 169


>sp|Q58958|YF63_METJA HYPOTHETICAL PROTEIN MJ1563 >gi|2128939|pir||B64495 hypothetical
           protein MJ1563 - Methanococcus jannaschii
           >gi|1592187|gb|AAB99584.1| (U67596) M. jannaschii
           predicted coding region MJ1563 [Methanococcus
           jannaschii]
           Length = 152
           
 Score = 79.6 bits (193), Expect = 2e-14
 Identities = 49/146 (33%), Positives = 85/146 (57%), Gaps = 5/146 (3%)

Query: 3   LEEAKRIIMETFANTARRLGQSELVGYIYGALFLANDPLSLSDIAEITGYSISHISSAMK 62
           +EEAK++I+E F+  A+  G ++ VG +Y  L+L++ PL++SDI E    S  ++S ++K
Sbjct: 4   MEEAKKLIIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLK 63

Query: 63  VLEGVGLVQRIKKPGDRRAYFVATKNFSEWRSSAFYEKILRDIDETKESIMRALEELEGE 122
            LE +G V+++   G+R+ Y+ A   FS  +  A   K   D+       ++ LEE   E
Sbjct: 64  KLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIA---KRKHDLIAKTYEDLKKLEEKCNE 120

Query: 123 QGSEVEEIKEKLKMALRRNEVARKLL 148
           +  E E IK+K+K   R  +++ K+L
Sbjct: 121 E--EKEFIKQKIKGIERMKKISEKIL 144


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.133    0.348 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54002898
Number of Sequences: 2977
Number of extensions: 1967923
Number of successful extensions: 12231
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12227
Number of HSP's gapped (non-prelim): 3
length of query: 171
length of database: 189,106,746
effective HSP length: 61
effective length of query: 110
effective length of database: 152,599,039
effective search space: 16785894290
effective search space used: 16785894290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)