BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1248 1645845 1645510 -112 !not a gene!
         (112 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B71456 hypothetical protein PH0304 - Pyrococcus horikoshii ...   127  5e-29

>pir||B71456 hypothetical protein PH0304 - Pyrococcus horikoshii
           >gi|3256694|dbj|BAA29377.1| (AP000001) 117aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 117
           
 Score =  127 bits (315), Expect = 5e-29
 Identities = 60/112 (53%), Positives = 78/112 (69%)

Query: 1   MAVNSHVAIISLLNDEAVGVCTESPHEVVVSICVNVELRVMVYARDRFHYYGRNLNPNSN 60
           M V+ +V I+SL   E VGV  ESPHEV++SI VNVELR+MVYARD FH Y  N N N+N
Sbjct: 1   MPVDPNVVIVSLFYYEPVGVSAESPHEVIISIRVNVELRIMVYARDGFHDYSWNFNSNAN 60

Query: 61  IYRAVSSLKSYLLRNLMEPLRSSPSWGHYYVLGLYREDVFTPLHLDPSLVEF 112
           +Y  +S  K+YL  N +EP+ SSP WG YYV  +YRE +  P +L P+ ++F
Sbjct: 61  VYWPMSRFKTYLFSNFVEPICSSPPWGDYYVPCIYREGILAPSNLYPAFIKF 112


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.138    0.415 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41982922
Number of Sequences: 2977
Number of extensions: 1539220
Number of successful extensions: 2813
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2812
Number of HSP's gapped (non-prelim): 1
length of query: 112
length of database: 189,106,746
effective HSP length: 50
effective length of query: 62
effective length of database: 159,182,396
effective search space: 9869308552
effective search space used: 9869308552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)