BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1251 (PAB1251) DE:Hypothetical protein
(276 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75015 hypothetical protein PAB1251 - Pyrococcus abyssi (st... 555 e-157
pir||G71456 hypothetical protein PH0309 - Pyrococcus horikoshii ... 253 2e-66
sp|Q57841|Y398_METJA HYPOTHETICAL PROTEIN MJ0398 >gi|2128296|pir... 220 1e-56
sp|Q57762|Y314_METJA HYPOTHETICAL PROTEIN MJ0314 >gi|2128232|pir... 75 7e-13
>pir||D75015 hypothetical protein PAB1251 - Pyrococcus abyssi (strain Orsay)
>gi|5459076|emb|CAB50562.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 276
Score = 555 bits (1416), Expect = e-157
Identities = 276/276 (100%), Positives = 276/276 (100%)
Query: 1 MRKLSELSLDEVEKVKQRILELRNEGFSYSRIVEAIREEFEVTISKPTVIRWCKGITDPA 60
MRKLSELSLDEVEKVKQRILELRNEGFSYSRIVEAIREEFEVTISKPTVIRWCKGITDPA
Sbjct: 1 MRKLSELSLDEVEKVKQRILELRNEGFSYSRIVEAIREEFEVTISKPTVIRWCKGITDPA 60
Query: 61 NKIKRVNLEPSQSLAYIIGVYFGGGSLDADEKYRYRIKLKVIDKEFAEAFSNALKDIGAN 120
NKIKRVNLEPSQSLAYIIGVYFGGGSLDADEKYRYRIKLKVIDKEFAEAFSNALKDIGAN
Sbjct: 61 NKIKRVNLEPSQSLAYIIGVYFGGGSLDADEKYRYRIKLKVIDKEFAEAFSNALKDIGAN 120
Query: 121 PRLYFESSTGRWCVEATSKELYMFLSKPKEELFKIGEMFPREFIRGFFDSEGCFCFDKKA 180
PRLYFESSTGRWCVEATSKELYMFLSKPKEELFKIGEMFPREFIRGFFDSEGCFCFDKKA
Sbjct: 121 PRLYFESSTGRWCVEATSKELYMFLSKPKEELFKIGEMFPREFIRGFFDSEGCFCFDKKA 180
Query: 181 NAGFLAMSNYDLDILEFIRGLLLTKFGIKGSINLTKRKGTSVNIKGKRYFYSSDLYELRI 240
NAGFLAMSNYDLDILEFIRGLLLTKFGIKGSINLTKRKGTSVNIKGKRYFYSSDLYELRI
Sbjct: 181 NAGFLAMSNYDLDILEFIRGLLLTKFGIKGSINLTKRKGTSVNIKGKRYFYSSDLYELRI 240
Query: 241 SGIKDITEFYAKINITINRKRVLVEKYLKTKGYYQT 276
SGIKDITEFYAKINITINRKRVLVEKYLKTKGYYQT
Sbjct: 241 SGIKDITEFYAKINITINRKRVLVEKYLKTKGYYQT 276
>pir||G71456 hypothetical protein PH0309 - Pyrococcus horikoshii
>gi|3256699|dbj|BAA29382.1| (AP000001) 277aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 277
Score = 253 bits (639), Expect = 2e-66
Identities = 131/274 (47%), Positives = 189/274 (68%), Gaps = 5/274 (1%)
Query: 1 MRKLSELSLDEVEKVKQRILELRNEGFSYSRIVEAIREEFEVTISKPTVIRWCKGITDPA 60
M L +L +E+ ++ + + ELR+ G SYS+I + I EE V +SK TV+RWCKG +P
Sbjct: 1 MLTLKDLGQEELLELLEYVKELRSTGLSYSKIAKRIAEERGVKVSKTTVLRWCKGKHNPF 60
Query: 61 NKIKRVNLEPSQSLAYIIGVYFGGGSLDADEKYRYRIKLKVIDKEFAEAFSNALKDIGAN 120
KIK VNL+PS LAYI+GVYFG GS+ ++ Y+YRI+LKV+DKEFAEAF+ AL++IG N
Sbjct: 61 GKIKVVNLKPSPPLAYIVGVYFGDGSISLND-YKYRIRLKVVDKEFAEAFAEALREIGTN 119
Query: 121 PRLYFESS--TGRWCVEATSKELYMFLSKPKEELFKIGEMFPREFIRGFFDSEGCFCFDK 178
P+ Y ES R+ EATSK LY FL KPKEELF++ + +PREF++GFFDSEG D
Sbjct: 120 PQFYEESDGRRKRFVAEATSKSLYKFLEKPKEELFEVAKAYPREFLKGFFDSEGYVYLDP 179
Query: 179 KA-NAGFLAMSNYDLDILEFIRGLLLTKFGIKGSINLTKRKGTSVNIKGKRYFYSSDLYE 237
K ++++ NY+L++LEF +G LL+ GI I +K+ G+ V I+G++Y Y +LYE
Sbjct: 180 KTKKISYVSVWNYELELLEFSQG-LLSCLGIHSKIRASKKAGSRVLIRGEQYSYKKNLYE 238
Query: 238 LRISGIKDITEFYAKINITINRKRVLVEKYLKTK 271
LRI ++ + F ++ TI+RK+ + ++L K
Sbjct: 239 LRIYRVESVRRFAKEVGFTISRKQNKLREWLLIK 272
>sp|Q57841|Y398_METJA HYPOTHETICAL PROTEIN MJ0398 >gi|2128296|pir||F64349 hypothetical
protein MJ0398 - Methanococcus jannaschii
>gi|1591103|gb|AAB98393.1| (U67492) M. jannaschii
predicted coding region MJ0398 [Methanococcus
jannaschii]
Length = 271
Score = 220 bits (556), Expect = 1e-56
Identities = 123/278 (44%), Positives = 172/278 (61%), Gaps = 19/278 (6%)
Query: 1 MRKLSELSLDEVEKVKQRILELRNEGFSYSRIVEAIREEFEVTISKPTVIRWCKGITDPA 60
M L ELS +EV ++ + LR + FSYS+I + I E + ISK T+IRWCK +P
Sbjct: 1 MVNLKELSQNEVLELINYVKSLRKQNFSYSQISKKIEIERNIKISKSTIIRWCKNSNNPF 60
Query: 61 NKIKRVNLEPSQSLAYIIGVYFGGGSLDADEKYR-----YRIKLKVIDKEFAEAFSNALK 115
NK K ++L PS L+YIIGVYFG DA+ YR Y ++KV+DK+F + N+L
Sbjct: 61 NKTKFIDLSPSPELSYIIGVYFG----DANIYYRKKTGSYYFRIKVVDKDFVDVVKNSLI 116
Query: 116 DIGANPRL-YFESST--GRWCVEATSKELYMFLSKPKEELFKIGEMFPREFIRGFFDSEG 172
IG NP + Y E T RW VEA+SK LY FLS+ KEELFK+ E +P +F+RGFFDSEG
Sbjct: 117 KIGLNPTISYVEEKTRSNRWHVEASSKSLYKFLSQNKEELFKVAEKYPEDFLRGFFDSEG 176
Query: 173 CFCFDKKANAGFLAMSNYDLDILEFIRGLLLTKFGIKGSINLTKRKGTSVNIKGKRYFYS 232
+K +A+ NYDL++LEF + LL K + +I++ K+KGT NI+G+ Y Y
Sbjct: 177 YVTSNK------IALENYDLELLEFSKE-LLKKLDVHSTIHIAKKKGTESNIRGEIYHYK 229
Query: 233 SDLYELRISGIKDITEFYAKINITINRKRVLVEKYLKT 270
D Y L I + + F K++ +I RKR ++K L++
Sbjct: 230 DDFYRLSIHRKESVRNFAIKVSFSIKRKRERLQKLLES 267
>sp|Q57762|Y314_METJA HYPOTHETICAL PROTEIN MJ0314 >gi|2128232|pir||C64339 hypothetical
protein MJ0314 - Methanococcus jannaschii
>gi|1591034|gb|AAB98310.1| (U67486) M. jannaschii
predicted coding region MJ0314 [Methanococcus
jannaschii]
Length = 263
Score = 75.3 bits (182), Expect = 7e-13
Identities = 55/163 (33%), Positives = 90/163 (54%), Gaps = 12/163 (7%)
Query: 64 KRVNLEPSQSLAYIIGVYFGGGSLDADEKYRYRIKLKVIDKEFAEAFSNALKDIG---AN 120
K++NL PS+SLAYI+GV G GS++ E Y I+LKV DK+F E F L++IG N
Sbjct: 94 KKINLNPSESLAYILGVLNGDGSVNKQES-NYVIELKVTDKDFIEEFKRNLENIGFKYIN 152
Query: 121 PRL-YFESSTGRWCVEATSKELYMFLSKPKEELFK--IG--EMFPREFIRGFFDSEGCFC 175
+ FE+ ++ V SK Y + + + IG E +++GF+DSEG
Sbjct: 153 EYVRKFENKKDQYVVRVRSKGFYYWYKSLNVDYYMNVIGNNEKLMISWLKGFYDSEGSVV 212
Query: 176 FDKKAN--AGFLAMSNYDLDILEFIRGLLLTKFGIKGSINLTK 216
+KK N +++++N + ++++ + L K GI+ S+ K
Sbjct: 213 INKKGNYVYKYVSIANTNRNLID-VCCSFLEKLGIEYSVYCEK 254
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96596063
Number of Sequences: 2977
Number of extensions: 4063505
Number of successful extensions: 10629
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10616
Number of HSP's gapped (non-prelim): 4
length of query: 276
length of database: 189,106,746
effective HSP length: 55
effective length of query: 221
effective length of database: 156,189,961
effective search space: 34517981381
effective search space used: 34517981381
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)