BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1256 (PAB1256) DE:Hypothetical protein
         (287 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75014 hypothetical protein PAB1256 - Pyrococcus abyssi (st...   576  e-163

>pir||E75014 hypothetical protein PAB1256 - Pyrococcus abyssi (strain Orsay)
           >gi|5459069|emb|CAB50555.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 287
           
 Score =  576 bits (1468), Expect = e-163
 Identities = 287/287 (100%), Positives = 287/287 (100%)

Query: 1   MLNVKKGIIVVVLFLIGFLSAPVSSLVLKTNITLPSKIESGARVDFVLEISDIQGQCIYI 60
           MLNVKKGIIVVVLFLIGFLSAPVSSLVLKTNITLPSKIESGARVDFVLEISDIQGQCIYI
Sbjct: 1   MLNVKKGIIVVVLFLIGFLSAPVSSLVLKTNITLPSKIESGARVDFVLEISDIQGQCIYI 60

Query: 61  ETDLDQDKGRDIFNLTGIEYSFIKKGPKGKSILICGNFRGKSLKIPIHGIVPSGVIIQKV 120
           ETDLDQDKGRDIFNLTGIEYSFIKKGPKGKSILICGNFRGKSLKIPIHGIVPSGVIIQKV
Sbjct: 61  ETDLDQDKGRDIFNLTGIEYSFIKKGPKGKSILICGNFRGKSLKIPIHGIVPSGVIIQKV 120

Query: 121 SIKARNETKVLVLKSFDTSDHYYYLVKDLSTKDGPEIDKDFTPFKIKNPEYDQLINEINS 180
           SIKARNETKVLVLKSFDTSDHYYYLVKDLSTKDGPEIDKDFTPFKIKNPEYDQLINEINS
Sbjct: 121 SIKARNETKVLVLKSFDTSDHYYYLVKDLSTKDGPEIDKDFTPFKIKNPEYDQLINEINS 180

Query: 181 LNATDAKQIALKMLDYGLFDIVKNDLMPIFKNYDPTTAKKLSECEKALNLSQKELQETQS 240
           LNATDAKQIALKMLDYGLFDIVKNDLMPIFKNYDPTTAKKLSECEKALNLSQKELQETQS
Sbjct: 181 LNATDAKQIALKMLDYGLFDIVKNDLMPIFKNYDPTTAKKLSECEKALNLSQKELQETQS 240

Query: 241 KAQKNLFVGIGIGVIIGVFIGYIIGHNRGYKKGWDECNKRKTKIKKK 287
           KAQKNLFVGIGIGVIIGVFIGYIIGHNRGYKKGWDECNKRKTKIKKK
Sbjct: 241 KAQKNLFVGIGIGVIIGVFIGYIIGHNRGYKKGWDECNKRKTKIKKK 287


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.141    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102997069
Number of Sequences: 2977
Number of extensions: 4282177
Number of successful extensions: 14785
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14782
Number of HSP's gapped (non-prelim): 1
length of query: 287
length of database: 189,106,746
effective HSP length: 56
effective length of query: 231
effective length of database: 155,591,474
effective search space: 35941630494
effective search space used: 35941630494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)