BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1258 (PAB1258) DE:Hypothetical protein
         (651 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75014 hypothetical protein PAB1258 - Pyrococcus abyssi (st...  1280  0.0

>pir||C75014 hypothetical protein PAB1258 - Pyrococcus abyssi (strain Orsay)
           >gi|5459067|emb|CAB50553.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 651
           
 Score = 1280 bits (3276), Expect = 0.0
 Identities = 651/651 (100%), Positives = 651/651 (100%)

Query: 1   MKYRSFGIIPFLAFFGWGLLFGFLIKSLLLGNIIHANNAESVYNDYSFILDSFVFAILFG 60
           MKYRSFGIIPFLAFFGWGLLFGFLIKSLLLGNIIHANNAESVYNDYSFILDSFVFAILFG
Sbjct: 1   MKYRSFGIIPFLAFFGWGLLFGFLIKSLLLGNIIHANNAESVYNDYSFILDSFVFAILFG 60

Query: 61  LSTGIGIGMLFVPKVTSKKLSGLVIGFQLSIIGIRGDMFKEMWLWWITGIVIGVGISLIL 120
           LSTGIGIGMLFVPKVTSKKLSGLVIGFQLSIIGIRGDMFKEMWLWWITGIVIGVGISLIL
Sbjct: 61  LSTGIGIGMLFVPKVTSKKLSGLVIGFQLSIIGIRGDMFKEMWLWWITGIVIGVGISLIL 120

Query: 121 ILYGMKSNSERVYSFYIKIAKLIVTTWIAFLLWPLTAGIWNEITNGTYTSSNALYIYITS 180
           ILYGMKSNSERVYSFYIKIAKLIVTTWIAFLLWPLTAGIWNEITNGTYTSSNALYIYITS
Sbjct: 121 ILYGMKSNSERVYSFYIKIAKLIVTTWIAFLLWPLTAGIWNEITNGTYTSSNALYIYITS 180

Query: 181 TLVLLVVFMMSWKVMNTRMSEESVPIIFIGTRKSGKTFLSLIHLTYLNKYGKGEYVAETP 240
           TLVLLVVFMMSWKVMNTRMSEESVPIIFIGTRKSGKTFLSLIHLTYLNKYGKGEYVAETP
Sbjct: 181 TLVLLVVFMMSWKVMNTRMSEESVPIIFIGTRKSGKTFLSLIHLTYLNKYGKGEYVAETP 240

Query: 241 FIIGGIRKMTSPSDILRMIADDMRVIGRALSKVFPAVTFRDKNLQRIFNELVIRALMGSQ 300
           FIIGGIRKMTSPSDILRMIADDMRVIGRALSKVFPAVTFRDKNLQRIFNELVIRALMGSQ
Sbjct: 241 FIIGGIRKMTSPSDILRMIADDMRVIGRALSKVFPAVTFRDKNLQRIFNELVIRALMGSQ 300

Query: 301 IGTEVGSFSLYTLKIYKDRKSRILFGIPYAKVEFTDYAGEIVDQVEDYLGKYSQNPINIK 360
           IGTEVGSFSLYTLKIYKDRKSRILFGIPYAKVEFTDYAGEIVDQVEDYLGKYSQNPINIK
Sbjct: 301 IGTEVGSFSLYTLKIYKDRKSRILFGIPYAKVEFTDYAGEIVDQVEDYLGKYSQNPINIK 360

Query: 361 REVDKLAKDLNDALERGVVDFIDETLLSKLSKNIKENKNVIRKYINMLINDLRDLNFDFR 420
           REVDKLAKDLNDALERGVVDFIDETLLSKLSKNIKENKNVIRKYINMLINDLRDLNFDFR
Sbjct: 361 REVDKLAKDLNDALERGVVDFIDETLLSKLSKNIKENKNVIRKYINMLINDLRDLNFDFR 420

Query: 421 KYTRIFNFDSKVMSNYKPLLVSVFVLSRIKNAKKIGVLVDGESLLATMLQQATITGSGEL 480
           KYTRIFNFDSKVMSNYKPLLVSVFVLSRIKNAKKIGVLVDGESLLATMLQQATITGSGEL
Sbjct: 421 KYTRIFNFDSKVMSNYKPLLVSVFVLSRIKNAKKIGVLVDGESLLATMLQQATITGSGEL 480

Query: 481 VEVARKISEIEQLLERNRGVIRKAVNKIVSSSDIPPGYKELLREIEDPMHLRKILERKEN 540
           VEVARKISEIEQLLERNRGVIRKAVNKIVSSSDIPPGYKELLREIEDPMHLRKILERKEN
Sbjct: 481 VEVARKISEIEQLLERNRGVIRKAVNKIVSSSDIPPGYKELLREIEDPMHLRKILERKEN 540

Query: 541 VIRSVAVYLKLLQDDFIKGKDIAVIVTKSDIFTLLWGDRILTDKKNRERFLEKYVREVLR 600
           VIRSVAVYLKLLQDDFIKGKDIAVIVTKSDIFTLLWGDRILTDKKNRERFLEKYVREVLR
Sbjct: 541 VIRSVAVYLKLLQDDFIKGKDIAVIVTKSDIFTLLWGDRILTDKKNRERFLEKYVREVLR 600

Query: 601 LAMPKSNYRILFSGAKLDPIKVIGEVYGIDEIVEWEVEDNMSRLIAEVVLP 651
           LAMPKSNYRILFSGAKLDPIKVIGEVYGIDEIVEWEVEDNMSRLIAEVVLP
Sbjct: 601 LAMPKSNYRILFSGAKLDPIKVIGEVYGIDEIVEWEVEDNMSRLIAEVVLP 651


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.142    0.407 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225306927
Number of Sequences: 2977
Number of extensions: 9494752
Number of successful extensions: 33063
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33062
Number of HSP's gapped (non-prelim): 1
length of query: 651
length of database: 189,106,746
effective HSP length: 57
effective length of query: 594
effective length of database: 154,992,987
effective search space: 92065834278
effective search space used: 92065834278
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 168 (69.9 bits)