BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1262 (PAB1262) DE:Hypothetical protein
         (805 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75014 hypothetical protein PAB1262 - Pyrococcus abyssi (st...  1591  0.0

>pir||A75014 hypothetical protein PAB1262 - Pyrococcus abyssi (strain Orsay)
           >gi|5459065|emb|CAB50551.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 805
           
 Score = 1591 bits (4074), Expect = 0.0
 Identities = 805/805 (100%), Positives = 805/805 (100%)

Query: 1   MGVVFMVSFAIYTTSGDVVYDSLKMSKFRDMTSIIDMNNVIIAFKKGVTEILIGLRTLGR 60
           MGVVFMVSFAIYTTSGDVVYDSLKMSKFRDMTSIIDMNNVIIAFKKGVTEILIGLRTLGR
Sbjct: 1   MGVVFMVSFAIYTTSGDVVYDSLKMSKFRDMTSIIDMNNVIIAFKKGVTEILIGLRTLGR 60

Query: 61  FEGEPRKERLILFLKVNSIDEYQTALKEISEFMRTKVDRKVFLDISIDSIDLSSFDKCRE 120
           FEGEPRKERLILFLKVNSIDEYQTALKEISEFMRTKVDRKVFLDISIDSIDLSSFDKCRE
Sbjct: 61  FEGEPRKERLILFLKVNSIDEYQTALKEISEFMRTKVDRKVFLDISIDSIDLSSFDKCRE 120

Query: 121 EIMRYAQFIVEIAKREKSLKVKPPSCLKVELDERISNNDLDDHRIRLSIIGLYVLYPLLE 180
           EIMRYAQFIVEIAKREKSLKVKPPSCLKVELDERISNNDLDDHRIRLSIIGLYVLYPLLE
Sbjct: 121 EIMRYAQFIVEIAKREKSLKVKPPSCLKVELDERISNNDLDDHRIRLSIIGLYVLYPLLE 180

Query: 181 YTSEWIFFSVSASNEPGIWFVDKGDELESFKAIFAIYVLKGDSKENVIDEYGVGEIISDR 240
           YTSEWIFFSVSASNEPGIWFVDKGDELESFKAIFAIYVLKGDSKENVIDEYGVGEIISDR
Sbjct: 181 YTSEWIFFSVSASNEPGIWFVDKGDELESFKAIFAIYVLKGDSKENVIDEYGVGEIISDR 240

Query: 241 ELNDILKRKTVLYIKKIEGNHYLVISIFEGLNKRRIGILVEFPNVKPIMDSIDVEFENAV 300
           ELNDILKRKTVLYIKKIEGNHYLVISIFEGLNKRRIGILVEFPNVKPIMDSIDVEFENAV
Sbjct: 241 ELNDILKRKTVLYIKKIEGNHYLVISIFEGLNKRRIGILVEFPNVKPIMDSIDVEFENAV 300

Query: 301 EKALTRANIMVTLGRSGAYDSNMASARNTVLQILMGGRRNTYIKIPLPENTLHKILNDVA 360
           EKALTRANIMVTLGRSGAYDSNMASARNTVLQILMGGRRNTYIKIPLPENTLHKILNDVA
Sbjct: 301 EKALTRANIMVTLGRSGAYDSNMASARNTVLQILMGGRRNTYIKIPLPENTLHKILNDVA 360

Query: 361 FKAMLLKDIIRSSIEGKIPYERIFIGLGENCPTGLFEGICIVFSKYSHIPRRETQIHRKT 420
           FKAMLLKDIIRSSIEGKIPYERIFIGLGENCPTGLFEGICIVFSKYSHIPRRETQIHRKT
Sbjct: 361 FKAMLLKDIIRSSIEGKIPYERIFIGLGENCPTGLFEGICIVFSKYSHIPRRETQIHRKT 420

Query: 421 QKEEGFPWGVLFGGVLIGLLVGVVIASVFTIPIPFIKKTNLASIEYEVPREFFEKTQFLG 480
           QKEEGFPWGVLFGGVLIGLLVGVVIASVFTIPIPFIKKTNLASIEYEVPREFFEKTQFLG
Sbjct: 421 QKEEGFPWGVLFGGVLIGLLVGVVIASVFTIPIPFIKKTNLASIEYEVPREFFEKTQFLG 480

Query: 481 VGDKDLTGAWKQFNKALLAMNGTISRDNITTFLNYTLDLLIIYDREYRKYRESYNKIMNN 540
           VGDKDLTGAWKQFNKALLAMNGTISRDNITTFLNYTLDLLIIYDREYRKYRESYNKIMNN
Sbjct: 481 VGDKDLTGAWKQFNKALLAMNGTISRDNITTFLNYTLDLLIIYDREYRKYRESYNKIMNN 540

Query: 541 ITFLKRENEKLKSENTKLNKENNELEKRIVQLNKTNNELKKELEEFKVTFGHIIEKNLTT 600
           ITFLKRENEKLKSENTKLNKENNELEKRIVQLNKTNNELKKELEEFKVTFGHIIEKNLTT
Sbjct: 541 ITFLKRENEKLKSENTKLNKENNELEKRIVQLNKTNNELKKELEEFKVTFGHIIEKNLTT 600

Query: 601 EVNNLRITITNISEYLNDRKEYLRDLLSVYDNIKKKASLNLSLSVKYQAIVDRMNITVFK 660
           EVNNLRITITNISEYLNDRKEYLRDLLSVYDNIKKKASLNLSLSVKYQAIVDRMNITVFK
Sbjct: 601 EVNNLRITITNISEYLNDRKEYLRDLLSVYDNIKKKASLNLSLSVKYQAIVDRMNITVFK 660

Query: 661 ELYDQASSIYNESVELEAELSEISKLINHKDYIKAKKMLNEVKGDVKSLETRYKTFKQSF 720
           ELYDQASSIYNESVELEAELSEISKLINHKDYIKAKKMLNEVKGDVKSLETRYKTFKQSF
Sbjct: 661 ELYDQASSIYNESVELEAELSEISKLINHKDYIKAKKMLNEVKGDVKSLETRYKTFKQSF 720

Query: 721 ETIVKSEGRYNFKKWALEKDGDNLFKLIYEMINDPNLSEVFRQLNDSYSEEILKVNGKQV 780
           ETIVKSEGRYNFKKWALEKDGDNLFKLIYEMINDPNLSEVFRQLNDSYSEEILKVNGKQV
Sbjct: 721 ETIVKSEGRYNFKKWALEKDGDNLFKLIYEMINDPNLSEVFRQLNDSYSEEILKVNGKQV 780

Query: 781 DPLDMLRYLIEALKIIKGENEHESS 805
           DPLDMLRYLIEALKIIKGENEHESS
Sbjct: 781 DPLDMLRYLIEALKIIKGENEHESS 805


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.138    0.383 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276878699
Number of Sequences: 2977
Number of extensions: 11924182
Number of successful extensions: 57891
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57886
Number of HSP's gapped (non-prelim): 1
length of query: 805
length of database: 189,106,746
effective HSP length: 61
effective length of query: 744
effective length of database: 152,599,039
effective search space: 113533685016
effective search space used: 113533685016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 169 (70.2 bits)