BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1263 (PAB1263) DE:Hypothetical protein
(758 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75013 hypothetical protein PAB1263 - Pyrococcus abyssi (st... 1485 0.0
pir||T24806 hypothetical protein T10G3.5 - Caenorhabditis elegan... 78 3e-13
gb|AAC69932.2| (AC005700) putative myosin heavy chain [Arabidops... 78 4e-13
pir||A70387 conserved hypothetical protein aq_1006 - Aquifex aeo... 72 3e-11
>pir||H75013 hypothetical protein PAB1263 - Pyrococcus abyssi (strain Orsay)
>gi|5459064|emb|CAB50550.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 758
Score = 1485 bits (3803), Expect = 0.0
Identities = 758/758 (100%), Positives = 758/758 (100%)
Query: 1 MNMRVPSVLLILLFLLLLNGSIVYNSVSAGIYEQNDYTIRLGDSIEHPLSCRVFKLTFAD 60
MNMRVPSVLLILLFLLLLNGSIVYNSVSAGIYEQNDYTIRLGDSIEHPLSCRVFKLTFAD
Sbjct: 1 MNMRVPSVLLILLFLLLLNGSIVYNSVSAGIYEQNDYTIRLGDSIEHPLSCRVFKLTFAD 60
Query: 61 VSTDGDNIRLLFKITGLYYPIPNYTLVVTVTQDKDYTDPIDIYGRNIKTEWLSQVLFMKI 120
VSTDGDNIRLLFKITGLYYPIPNYTLVVTVTQDKDYTDPIDIYGRNIKTEWLSQVLFMKI
Sbjct: 61 VSTDGDNIRLLFKITGLYYPIPNYTLVVTVTQDKDYTDPIDIYGRNIKTEWLSQVLFMKI 120
Query: 121 RKVFTSGYMSKVDVTISVNMLKLAKAMINKANNAIKDAEQKTNELGIYLPIDSYKSRLKD 180
RKVFTSGYMSKVDVTISVNMLKLAKAMINKANNAIKDAEQKTNELGIYLPIDSYKSRLKD
Sbjct: 121 RKVFTSGYMSKVDVTISVNMLKLAKAMINKANNAIKDAEQKTNELGIYLPIDSYKSRLKD 180
Query: 181 AEANYNAGYYCDAIQIASEIMETINNDLELSLEAYNKIRDAESALSQAKKLGHEGTNQYK 240
AEANYNAGYYCDAIQIASEIMETINNDLELSLEAYNKIRDAESALSQAKKLGHEGTNQYK
Sbjct: 181 AEANYNAGYYCDAIQIASEIMETINNDLELSLEAYNKIRDAESALSQAKKLGHEGTNQYK 240
Query: 241 SAQAEIHNAWEYYYEAKWQSAIDAAEEALSYLNELMEGYGEAQEKLREAEKLIQNLKDKY 300
SAQAEIHNAWEYYYEAKWQSAIDAAEEALSYLNELMEGYGEAQEKLREAEKLIQNLKDKY
Sbjct: 241 SAQAEIHNAWEYYYEAKWQSAIDAAEEALSYLNELMEGYGEAQEKLREAEKLIQNLKDKY 300
Query: 301 TNPRINLKDAEEYLSAAKTSLEAGKFALAKDYATKAIEKARSIEAAYIKAVNARESAREK 360
TNPRINLKDAEEYLSAAKTSLEAGKFALAKDYATKAIEKARSIEAAYIKAVNARESAREK
Sbjct: 301 TNPRINLKDAEEYLSAAKTSLEAGKFALAKDYATKAIEKARSIEAAYIKAVNARESAREK 360
Query: 361 INSAETQNPEICLKDIKSLMTLGDKALFAGKYEDAYKYYLQVLEKVNKTVELYKKVREKM 420
INSAETQNPEICLKDIKSLMTLGDKALFAGKYEDAYKYYLQVLEKVNKTVELYKKVREKM
Sbjct: 361 INSAETQNPEICLKDIKSLMTLGDKALFAGKYEDAYKYYLQVLEKVNKTVELYKKVREKM 420
Query: 421 EYAKTIILEYEAKGYKMIEANETYNKGLSAVKSCDYENAYTFFQNAEIQANETYNTAREV 480
EYAKTIILEYEAKGYKMIEANETYNKGLSAVKSCDYENAYTFFQNAEIQANETYNTAREV
Sbjct: 421 EYAKTIILEYEAKGYKMIEANETYNKGLSAVKSCDYENAYTFFQNAEIQANETYNTAREV 480
Query: 481 ENKLNDIKNVLNKLRTMGIDINRYSPKLSEINSLYESGDYKTALQTAMSLYDAVSSEYDT 540
ENKLNDIKNVLNKLRTMGIDINRYSPKLSEINSLYESGDYKTALQTAMSLYDAVSSEYDT
Sbjct: 481 ENKLNDIKNVLNKLRTMGIDINRYSPKLSEINSLYESGDYKTALQTAMSLYDAVSSEYDT 540
Query: 541 AKVVYEKLRKAEQDIKYTEQKLQELLESAGFSTKVKLPEMISNKLKLAWEEFKKGNYKLA 600
AKVVYEKLRKAEQDIKYTEQKLQELLESAGFSTKVKLPEMISNKLKLAWEEFKKGNYKLA
Sbjct: 541 AKVVYEKLRKAEQDIKYTEQKLQELLESAGFSTKVKLPEMISNKLKLAWEEFKKGNYKLA 600
Query: 601 EQYSQEALQQAKSEYERQASLVNKIQEWERISRESINSAKLHLQEIKDNIFYRVFRTPEV 660
EQYSQEALQQAKSEYERQASLVNKIQEWERISRESINSAKLHLQEIKDNIFYRVFRTPEV
Sbjct: 601 EQYSQEALQQAKSEYERQASLVNKIQEWERISRESINSAKLHLQEIKDNIFYRVFRTPEV 660
Query: 661 VASVRKTKELIQKAEETLSKEAKLKSQGASLIEIAKLAENAKELAKQAEAMAMDPDQDGI 720
VASVRKTKELIQKAEETLSKEAKLKSQGASLIEIAKLAENAKELAKQAEAMAMDPDQDGI
Sbjct: 661 VASVRKTKELIQKAEETLSKEAKLKSQGASLIEIAKLAENAKELAKQAEAMAMDPDQDGI 720
Query: 721 PSYADKVSLLPTSYVIGGAIDLILLILGILLVRHLSRG 758
PSYADKVSLLPTSYVIGGAIDLILLILGILLVRHLSRG
Sbjct: 721 PSYADKVSLLPTSYVIGGAIDLILLILGILLVRHLSRG 758
>pir||T24806 hypothetical protein T10G3.5 - Caenorhabditis elegans
>gi|3879709|emb|CAB03330.1| (Z81118) Similarity to Human
endosomal protein P162 (TR:Q15075), contains similarity
to Pfam domain: PF01363 (FYVE zinc finger), Score=113.9,
E-value=3.4e-31, N=1~cDNA EST EMBL:Z14487 comes from
this gene~cDNA EST EMBL:Z14556 comes from this gene~cDNA
>
Length = 1164
Score = 78.4 bits (190), Expect = 3e-13
Identities = 130/608 (21%), Positives = 250/608 (40%), Gaps = 80/608 (13%)
Query: 129 MSKVDVTISV----NMLKLAKAMINKANNAIKDAEQKTNELGIYLP-----IDSYKSRLK 179
M+ +D+T + ++L ++++ + N I + + N+L L YK+ LK
Sbjct: 415 MANLDLTNELASMGSLLDKERSLLEEKNKEISERDSSINDLKEKLAESEKKATKYKNELK 474
Query: 180 D-AEANYNAGYYCDAIQIAS-EIMETINNDL--------ELSLEAYNKIRDAESALSQAK 229
+ A+ N + +Q S ++ME I+ +L E + +++ + K
Sbjct: 475 EHADLVENLTLQLNKLQENSKDLMEKISAGEGGAKMAIEQLEQEKVKLTNELQTSSEKTK 534
Query: 230 KLGHEGTNQYKSAQAEIHNAWEYYY--EAKWQSAIDAAEEALSYLNELMEGYGEAQEKLR 287
K E + + ++ +A E KW+ ++ E L+ + ++ GE +
Sbjct: 535 KASGELEAKISELEKKLRDAEASRTDKEQKWKQEKESFERKLAEAEDEIKRKGE---RFV 591
Query: 288 EAEKLIQNLKDKYTNPRINLKDA----EEYLSAAKTSLEAGKFALAKDYATKAIEKARSI 343
E EK ++ + K T+ + LKDA E+ L K E + + ++ E + I
Sbjct: 592 EMEKEMEEERQKATDRTLKLKDALVNSEKNLETIKKESE-DREKIVREKDAHLEENKKRI 650
Query: 344 EAAYIKAVNARESAREKINSAETQNPEICLKDIKSLMTLGDKALFAGKYEDAYKYYLQ-- 401
E A K A + ARE S +++ + K+ L L K + + + K ++
Sbjct: 651 EDAVQKLEEAEKRARELEASVSSRDTTVSTKE-SELSELKGKLTESNSFIEELKVQVEKV 709
Query: 402 ---VLEKVNKTVELYKKVREKMEYAKTIILEYEAKGYKMIEANETYNKGLSAVKSCDYEN 458
+ EK + L ++R+K + KT E+EA+ + E NE + L +V+
Sbjct: 710 SNEISEKQQEVENLMAEMRDKEAHWKTKRDEFEAQMLRNQEDNEEASSTLKSVQE----- 764
Query: 459 AYTFFQNAEIQANETYNTAREVENKLNDIKNVLNKLRTMGIDINRYSPKLSEINSLYESG 518
Q + T+ E +N+L +K+ L +L+T E+ L S
Sbjct: 765 ----------QLMKEKETSGEEKNQLISVKSQLEELKT-------------EVERLIRSE 801
Query: 519 DYKT-ALQTAMSLYDAVSSEYDTAKVVYEKLRKAEQDIKYTEQKLQELLESAGFSTKVKL 577
+ KT ++ S A + E D E LR +++ Q ++E A L
Sbjct: 802 EEKTQEIEKLKSAVTATTQERDELTATSESLRTECENLNSKIQSIEESRRHAEEKGSENL 861
Query: 578 PEMISNKLKLAWEEFKKGNYKLAEQYSQEALQQAKSEYERQASLVNKIQEWERISRESIN 637
MI+ K +L + ++ + Q QEAL+ +E E ++ +R+ + +
Sbjct: 862 ERMITEKSRLEKDIEER---ESTIQSIQEALETKDNEIE-------SLKTTQRVVEDELV 911
Query: 638 SAKLHLQEIKDNIFYRVFRTPEVVASVRKTKELI--QKAEETLSKEAKLKSQGASLIEIA 695
S H++ R+ + +AS ++T E + +KAEET +Q E+
Sbjct: 912 SKISHIESFNS----RIEEFEKEMASGKRTIERLEAEKAEETEKLVVFTGTQSQKQEELE 967
Query: 696 KLAENAKE 703
KL + +E
Sbjct: 968 KLQKEIQE 975
>gb|AAC69932.2| (AC005700) putative myosin heavy chain [Arabidopsis thaliana]
Length = 1269
Score = 77.6 bits (188), Expect = 4e-13
Identities = 154/670 (22%), Positives = 264/670 (38%), Gaps = 128/670 (19%)
Query: 125 TSGYMSKVDVTISVNMLKLAKAMINKA--NNAIKDAEQKTNELGIYLPIDSYKSRLKDAE 182
T G +K+ +N KLA+ + K + KD E+K + LK+ E
Sbjct: 346 TKGLQAKLSEQEGINS-KLAEELKEKELLESLSKDQEEKLRTAN-----EKLAEVLKEKE 399
Query: 183 A-NYNAGYYCDAIQIASEIMETINNDLELSLEAYNKIRDAESALSQAKKLGHEGTNQYKS 241
A N + +E+ + L+ S E ++K ++ LSQA E + KS
Sbjct: 400 ALEANVAEVTSNVATVTEVCNELEEKLKTSDENFSK---TDALLSQALSNNSELEQKLKS 456
Query: 242 AQAEIHNAWEYYYEAKWQ----------SAIDAAEEALSYLNELMEGYGEAQEKLRE--- 288
+ E+H+ A Q S+ AAEEA S + EL + A++K E
Sbjct: 457 LE-ELHSEAGSAAAAATQKNLELEDVVRSSSQAAEEAKSQIKELETKFTAAEQKNAELEQ 515
Query: 289 -----------AEKLIQNLKDKYTNPRINLKDAEEYLSAAKTSLEAGK------------ 325
AE+ ++ L +K + + ++ AEE A T ++ K
Sbjct: 516 QLNLLQLKSSDAERELKELSEKSSELQTAIEVAEEEKKQATTQMQEYKQKASELELSLTQ 575
Query: 326 -------------FALAK-----DYATKAIEKARSIEAAYIKAVNARESAREKINSAE-- 365
AL K D A +++ +E + + E A ++ E
Sbjct: 576 SSARNSELEEDLRIALQKGAEHEDRANTTHQRSIELEGLCQSSQSKHEDAEGRLKDLELL 635
Query: 366 TQNPEICLKDIKSLMTLGDKALFAGKYEDAYKYYLQVLEKVNKTVELYKKVREKMEYAKT 425
Q + +++++ ++ +K G+ E K YL + ++ T+E ++ +E A
Sbjct: 636 LQTEKYRIQELEEQVSSLEKK--HGETEADSKGYLGQVAELQSTLEAFQVKSSSLEAALN 693
Query: 426 IILEYEAKGYKMIEANETYNKGLSA------VKSCDYENAYTFFQNAEIQANETYNTARE 479
I E E + + + A + K L A VK + EN +N + N T
Sbjct: 694 IATENEKELTENLNAVTSEKKKLEATVDEYSVKISESENLLESIRN---ELNVTQGKLES 750
Query: 480 VENKL-----------NDIKNVLNKLRTMGIDINRYSPKLSEINSLYE--SGDYKTALQT 526
+EN L +K+ L G +I+ + K E+ +L++ S D + LQ
Sbjct: 751 IENDLKAAGLQESEVMEKLKSAEESLEQKGREIDEATTKRMELEALHQSLSIDSEHRLQK 810
Query: 527 AMSLYDAVSSEYDTAKVVYEKLRKAEQDIKYTEQKLQELLESAGFSTKVKLPEMISNKLK 586
AM + + SE A + EKLR E IK E++L E S K KL + + +
Sbjct: 811 AMEEFTSRDSE---ASSLTEKLRDLEGKIKSYEEQLAE-ASGKSSSLKEKLEQTLG---R 863
Query: 587 LAWEEFKKGNYKLAEQYSQEALQQAKSEYERQASLVNKIQEWERISRESINSAKLHLQEI 646
LA E K +QE Q+ SE E A E+ N K+ +QE+
Sbjct: 864 LAAAESVNEKLKQEFDQAQEKSLQSSSESELLA--------------ETNNQLKIKIQEL 909
Query: 647 KDNIFYRVFRTPEVVASVRKTKELIQKAEETLSKEAKLKSQGASLIEIAKLAENA----K 702
+ I SV K + +++ EE + + + +++ + L+E K EN K
Sbjct: 910 EGLI---------GSGSVEK-ETALKRLEEAIERFNQKETESSDLVEKLKTHENQIEEYK 959
Query: 703 ELAKQAEAMA 712
+LA +A +A
Sbjct: 960 KLAHEASGVA 969
>pir||A70387 conserved hypothetical protein aq_1006 - Aquifex aeolicus
>gi|2983515|gb|AAC07092.1| (AE000718) hypothetical
protein [Aquifex aeolicus]
Length = 978
Score = 71.8 bits (173), Expect = 3e-11
Identities = 122/549 (22%), Positives = 236/549 (42%), Gaps = 55/549 (10%)
Query: 195 QIASEIMETINNDLELSLEAYNKIRDAESALSQAKKLGHEGTNQYKSAQAEIHNAWEYYY 254
Q+ASE + + E + Y ++D + KK E T K+ + E+ E
Sbjct: 171 QLASETFKNLEGKREALKKEYELLKD----YTPTKKEVLEKT--LKNLEEELKELKET-- 222
Query: 255 EAKWQSAIDAAEEALSYLNELMEGYGEAQEKLREAEKLIQNLKDKY-----TNPRINLKD 309
E K + + AEE S EL + + +E L EK ++ L++K P + +
Sbjct: 223 EEKLRQELKKAEEKDSLERELSQVVTKLKE-LENLEKEVEKLREKLEFSRKVAPYVPIAK 281
Query: 310 AEEYLSAAKTSLEAGK------FALAKDYATKAIEKARSIEAAYIKAVNARESARE-KIN 362
E + T L+ K A+ KD + A E+ IEA K +E +E +
Sbjct: 282 RIEEIDKKLTELKVRKNKLTKELAVLKDELSFAQEELNRIEAEKEKFKEEKEREKELEHR 341
Query: 363 SAETQNPEICLKDIKSLMT-LGDKALFAGKYEDAYKYYLQVLEKVNKTVELYKKVREKME 421
+ Q + LK++ L + L +K +YE A + + + E+V K +L + EK+E
Sbjct: 342 LKKLQEIKEILKELSQLSSSLKEKER---EYEQAKQEFEDLSERVEKGKKLVAETEEKLE 398
Query: 422 YAKTIILEYEAKGYKMIE-ANETYNKGLSAVKSCD--YENAYTFFQNAEIQANETYNTAR 478
K + E E KM E + L +K + EN ++ + + N +
Sbjct: 399 KIKELFSEEEYTSLKMKERLLVELQRKLKELKEKEGQLENLTQKYKEKKKVHEKVLNELK 458
Query: 479 EVENKLND---------IKNVLNKLRTMGIDINRYSPKLSEINSLYESGDYKTALQTAMS 529
E+E +L + + + L+ T + Y K E + + L+ A
Sbjct: 459 ELERELKERELHYHAHMVASYLSPGDTCPVCGGIYRGKALE----NVDAEGISELKHAKE 514
Query: 530 LYDAVSSEYDTAKVVY-EKLRKAEQDIKYTEQKLQELLESAGFSTKVKLPEMISNKLKLA 588
L + E DT +Y +K+ +++++ +++EL + + K ++ ++ +++
Sbjct: 515 LKEKEEREIDTTLKLYAQKINSLKEEMEKLRNEVEELRKEIPENLKERIKKLEELRIEKE 574
Query: 589 WEEFKKGNYKLAEQYSQEALQQAKSEYERQAS----LVNKIQEWERISRE-----SINSA 639
E K Y+ A + Q+ ++A+++ + + L KI+E R+ +E +
Sbjct: 575 KLEHKLNKYRKALEDRQKQKEEAQAKLHKAQTELELLKEKIREKSRLVKEFKELYRVERL 634
Query: 640 KLHLQEIKDNIFYRVFRTPEVVASVRKTKELIQKAEETLSKEAKLKSQGASLIE-IAKLA 698
+ + + +K+ I Y + E+ K K+L + EE S+++KL+ + ++L E I L
Sbjct: 635 EDYEESLKEEINYINSKLQEI---EEKEKKLRKHFEELSSRKSKLEGELSALNESINSLE 691
Query: 699 ENAKELAKQ 707
E KE K+
Sbjct: 692 EERKEKLKE 700
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.312 0.130 0.347
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246086659
Number of Sequences: 2977
Number of extensions: 9600178
Number of successful extensions: 39114
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 39077
Number of HSP's gapped (non-prelim): 9
length of query: 758
length of database: 189,106,746
effective HSP length: 67
effective length of query: 691
effective length of database: 149,008,117
effective search space: 102964608847
effective search space used: 102964608847
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 168 (69.9 bits)