BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1264 (PAB1264) DE:Hypothetical protein
         (177 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75013 hypothetical protein PAB1264 - Pyrococcus abyssi (st...   351  2e-96
pir||H71137 hypothetical protein PH0868 - Pyrococcus horikoshii ...   145  3e-34

>pir||G75013 hypothetical protein PAB1264 - Pyrococcus abyssi (strain Orsay)
           >gi|5459063|emb|CAB50549.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 177
           
 Score =  351 bits (892), Expect = 2e-96
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MCSMDVERRLLWVGSSIALLSLIYVVFSVSMVDLRHVGVMLVFFGVAGFSLYGAFRVYRE 60
           MCSMDVERRLLWVGSSIALLSLIYVVFSVSMVDLRHVGVMLVFFGVAGFSLYGAFRVYRE
Sbjct: 1   MCSMDVERRLLWVGSSIALLSLIYVVFSVSMVDLRHVGVMLVFFGVAGFSLYGAFRVYRE 60

Query: 61  SKIRWLLFGMGFIVASVAVSQLSHSCRPNKPPHTRSNRNNKRLRSMKDEKKAFLILYAVS 120
           SKIRWLLFGMGFIVASVAVSQLSHSCRPNKPPHTRSNRNNKRLRSMKDEKKAFLILYAVS
Sbjct: 61  SKIRWLLFGMGFIVASVAVSQLSHSCRPNKPPHTRSNRNNKRLRSMKDEKKAFLILYAVS 120

Query: 121 LIMAVAIFLYLTRIEGYTTEDITKVGLMVLLPVLALHSIGGAIILKHYRGKPKETNS 177
           LIMAVAIFLYLTRIEGYTTEDITKVGLMVLLPVLALHSIGGAIILKHYRGKPKETNS
Sbjct: 121 LIMAVAIFLYLTRIEGYTTEDITKVGLMVLLPVLALHSIGGAIILKHYRGKPKETNS 177


>pir||H71137 hypothetical protein PH0868 - Pyrococcus horikoshii
          >gi|3257279|dbj|BAA29962.1| (AP000003) 124aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 124
          
 Score =  145 bits (362), Expect = 3e-34
 Identities = 73/84 (86%), Positives = 79/84 (93%), Gaps = 1/84 (1%)

Query: 1  MCSMD-VERRLLWVGSSIALLSLIYVVFSVSMVDLRHVGVMLVFFGVAGFSLYGAFRVYR 59
          MCSM  VERRLLW+G  +ALLSLIYVVFSVS V+LRHVGVMLVFFGVAGFSLYGAF+VYR
Sbjct: 1  MCSMGAVERRLLWIGGVVALLSLIYVVFSVSAVNLRHVGVMLVFFGVAGFSLYGAFKVYR 60

Query: 60 ESKIRWLLFGMGFIVASVAVSQLS 83
          ESKIRWLLFGMGFI+ASVAVSQL+
Sbjct: 61 ESKIRWLLFGMGFIIASVAVSQLT 84


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.141    0.413 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61065400
Number of Sequences: 2977
Number of extensions: 2156593
Number of successful extensions: 8041
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8039
Number of HSP's gapped (non-prelim): 2
length of query: 177
length of database: 189,106,746
effective HSP length: 52
effective length of query: 125
effective length of database: 157,985,422
effective search space: 19748177750
effective search space used: 19748177750
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 162 (67.5 bits)