BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1265 (PAB1265) DE:Hypothetical protein
         (147 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75013 hypothetical protein PAB1265 - Pyrococcus abyssi (st...   296  6e-80
pir||B71138 hypothetical protein PH0870 - Pyrococcus horikoshii ...   226  1e-58
sp|Q58203|Y793_METJA HYPOTHETICAL PROTEIN MJ0793 >gi|2128507|pir...    92  3e-18

>pir||F75013 hypothetical protein PAB1265 - Pyrococcus abyssi (strain Orsay)
           >gi|5459062|emb|CAB50548.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 147
           
 Score =  296 bits (751), Expect = 6e-80
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MLFFIFGIISGLFSASHNDYSAYFGFDPFDDSNPGFLFFFFKHNIKVALLLWSGAITFGG 60
           MLFFIFGIISGLFSASHNDYSAYFGFDPFDDSNPGFLFFFFKHNIKVALLLWSGAITFGG
Sbjct: 1   MLFFIFGIISGLFSASHNDYSAYFGFDPFDDSNPGFLFFFFKHNIKVALLLWSGAITFGG 60

Query: 61  TTLLDLTFNGMILGSAVKTTIDQIGLIKTLLLILPHGLFEIPALIIAGAAGFKIPYELLR 120
           TTLLDLTFNGMILGSAVKTTIDQIGLIKTLLLILPHGLFEIPALIIAGAAGFKIPYELLR
Sbjct: 61  TTLLDLTFNGMILGSAVKTTIDQIGLIKTLLLILPHGLFEIPALIIAGAAGFKIPYELLR 120

Query: 121 FALGKKDRIISEEDAKEFSSSFFSLPL 147
           FALGKKDRIISEEDAKEFSSSFFSLPL
Sbjct: 121 FALGKKDRIISEEDAKEFSSSFFSLPL 147


>pir||B71138 hypothetical protein PH0870 - Pyrococcus horikoshii
           >gi|3257281|dbj|BAA29964.1| (AP000003) 165aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 165
           
 Score =  226 bits (570), Expect = 1e-58
 Identities = 109/135 (80%), Positives = 124/135 (91%), Gaps = 1/135 (0%)

Query: 4   FIFGIISGLFSASHNDYSAYFGFDPFDDSNPGFLFFFFKHNIKVALLLWSGAITFGGTTL 63
           F   I+ G FSA  +DYSAYFGFDPFD+SNPGFLFFF +HN+KVAL+LWSGA+TFGGTTL
Sbjct: 2   FTTSIVLGFFSALTHDYSAYFGFDPFDNSNPGFLFFF-RHNVKVALMLWSGALTFGGTTL 60

Query: 64  LDLTFNGMILGSAVKTTIDQIGLIKTLLLILPHGLFEIPALIIAGAAGFKIPYELLRFAL 123
           L+L FNGMILGSAVKTT +QIGLIKT+LLILPHG+FEIPA+IIAGAAGFKIPYELLRFAL
Sbjct: 61  LNLAFNGMILGSAVKTTAEQIGLIKTILLILPHGVFEIPAIIIAGAAGFKIPYELLRFAL 120

Query: 124 GKKDRIISEEDAKEF 138
           G+K+ II+EEDAKEF
Sbjct: 121 GRKEEIITEEDAKEF 135


>sp|Q58203|Y793_METJA HYPOTHETICAL PROTEIN MJ0793 >gi|2128507|pir||A64399 hypothetical
           protein MJ0793 - Methanococcus jannaschii
           >gi|1499615|gb|AAB98796.1| (U67524) M. jannaschii
           predicted coding region MJ0793 [Methanococcus
           jannaschii]
           Length = 178
           
 Score = 92.1 bits (225), Expect = 3e-18
 Identities = 58/145 (40%), Positives = 84/145 (57%), Gaps = 19/145 (13%)

Query: 2   LFFIFGIIS--GLFSASHNDYSAYFGFDPFDDSNPGFLFFF---FKHNIKVALLLWSGAI 56
           L FIFG IS   L   +  D S Y          P   F F     +N+KV  L+ +G+I
Sbjct: 14  LGFIFGFISINNLSKINDKDLSNYI---------PNIQFNFPSILTNNLKVIFLMLAGSI 64

Query: 57  TFGGTTLLDLTFNGMILG---SAVKTTIDQIGLIKTLLLILPHGLFEIPALIIAGAAGFK 113
           TFG +T ++L FNG  +G    ++  T + + LI  L  ILPHG+FEI A++I+  AGFK
Sbjct: 65  TFGLSTFINLIFNGFNVGVLIGSISLTNEPLKLITAL--ILPHGIFEISAMLISAVAGFK 122

Query: 114 IPYELLRFALGKKDRIISEEDAKEF 138
           IPY++  + L KK++ ++EED K+F
Sbjct: 123 IPYKVTLYLLDKKEKPLTEEDIKDF 147


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.149    0.445 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55176281
Number of Sequences: 2977
Number of extensions: 2291511
Number of successful extensions: 5678
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5674
Number of HSP's gapped (non-prelim): 3
length of query: 147
length of database: 189,106,746
effective HSP length: 48
effective length of query: 99
effective length of database: 160,379,370
effective search space: 15877557630
effective search space used: 15877557630
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 161 (67.1 bits)