BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1272 (PAB1272) DE:Hypothetical protein
(380 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75012 hypothetical protein PAB1272 - Pyrococcus abyssi (st... 769 0.0
pir||A71139 hypothetical protein PH0324 - Pyrococcus horikoshii ... 709 0.0
gb|AAK40582.1| Conserved hypothetical protein [Sulfolobus solfat... 300 1e-80
sp|Q57600|Y136_METJA HYPOTHETICAL PROTEIN MJ0136 >gi|2127996|pir... 299 4e-80
pir||D69027 conserved hypothetical protein MTH1201 - Methanobact... 287 2e-76
gi|11497872 conserved hypothetical protein [Archaeoglobus fulgid... 254 1e-66
gi|11497733 conserved hypothetical protein [Archaeoglobus fulgid... 238 6e-62
pir||F71006 hypothetical protein PH1348 - Pyrococcus horikoshii ... 202 6e-51
gb|AAK40581.1| Conserved hypothetical protein [Sulfolobus solfat... 191 9e-48
pir||B75125 hypothetical protein PAB0547 - Pyrococcus abyssi (st... 188 8e-47
sp|P14027|YRP8_METVA HYPOTHETICAL 26.3 KD PROTEIN IN RPS10 3'REG... 139 6e-32
pir||QQMX3 hypothetical protein 3 - Methanococcus vannielii >gi|... 73 5e-12
>pir||F75012 hypothetical protein PAB1272 - Pyrococcus abyssi (strain Orsay)
>gi|5459054|emb|CAB50540.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 380
Score = 769 bits (1963), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MITREQVLEVLEKYDKDKITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFR 60
MITREQVLEVLEKYDKDKITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFR
Sbjct: 1 MITREQVLEVLEKYDKDKITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFR 60
Query: 61 MRKTRDGLVKGFIDEVIVLDKFAQIIEIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLV 120
MRKTRDGLVKGFIDEVIVLDKFAQIIEIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLV
Sbjct: 61 MRKTRDGLVKGFIDEVIVLDKFAQIIEIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLV 120
Query: 121 PMFGTRSLLRTEERSEEKSYYWLLEKAKLPYPEPVSPEEIDDVGLVIVKLPHAKKRLERG 180
PMFGTRSLLRTEERSEEKSYYWLLEKAKLPYPEPVSPEEIDDVGLVIVKLPHAKKRLERG
Sbjct: 121 PMFGTRSLLRTEERSEEKSYYWLLEKAKLPYPEPVSPEEIDDVGLVIVKLPHAKKRLERG 180
Query: 181 FFTAASYKEFKEKSEKLIRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGI 240
FFTAASYKEFKEKSEKLIRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGI
Sbjct: 181 FFTAASYKEFKEKSEKLIRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGI 240
Query: 241 DWRFETSLDGHVRLPAAQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEAT 300
DWRFETSLDGHVRLPAAQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEAT
Sbjct: 241 DWRFETSLDGHVRLPAAQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEAT 300
Query: 301 KKYYPPGIIGPFTLQTAVDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGR 360
KKYYPPGIIGPFTLQTAVDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGR
Sbjct: 301 KKYYPPGIIGPFTLQTAVDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGR 360
Query: 361 RIALEIKRAIELDELEKIVT 380
RIALEIKRAIELDELEKIVT
Sbjct: 361 RIALEIKRAIELDELEKIVT 380
>pir||A71139 hypothetical protein PH0324 - Pyrococcus horikoshii
>gi|3256715|dbj|BAA29398.1| (AP000002) 383aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 383
Score = 709 bits (1811), Expect = 0.0
Identities = 345/380 (90%), Positives = 361/380 (94%)
Query: 1 MITREQVLEVLEKYDKDKITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFR 60
MI RE++L +LEKYDKDKITIGVIGSHSALDIADGAKEEG P LVVAQRGRHRTY KYF+
Sbjct: 4 MIDREEILSILEKYDKDKITIGVIGSHSALDIADGAKEEGFPVLVVAQRGRHRTYAKYFK 63
Query: 61 MRKTRDGLVKGFIDEVIVLDKFAQIIEIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLV 120
+RKT+D L KGFIDEVI+LDKFAQIIEIQEEL KRNVIF+PNRSFVVYTGID+VENEF V
Sbjct: 64 LRKTKDNLTKGFIDEVIILDKFAQIIEIQEELIKRNVIFIPNRSFVVYTGIDKVENEFKV 123
Query: 121 PMFGTRSLLRTEERSEEKSYYWLLEKAKLPYPEPVSPEEIDDVGLVIVKLPHAKKRLERG 180
PMFGTRSLLRTEER EEKSYYWLLEKA LPYPE V PEEIDDVGLV+VKLPHAKKRLERG
Sbjct: 124 PMFGTRSLLRTEERREEKSYYWLLEKAGLPYPEEVKPEEIDDVGLVMVKLPHAKKRLERG 183
Query: 181 FFTAASYKEFKEKSEKLIRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGI 240
FFTAASYKEFKEKSE+LIRLGVITREDL KARIERYIIGPVFNFDFFYSPID EIELLG+
Sbjct: 184 FFTAASYKEFKEKSERLIRLGVITREDLDKARIERYIIGPVFNFDFFYSPIDEEIELLGV 243
Query: 241 DWRFETSLDGHVRLPAAQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEAT 300
DWRFETSLDGHVRLPAAQQLTLPE QFEPEYTVCGHAS+TLRESLLEKVFDMAEKYVEAT
Sbjct: 244 DWRFETSLDGHVRLPAAQQLTLPEHQFEPEYTVCGHASATLRESLLEKVFDMAEKYVEAT 303
Query: 301 KKYYPPGIIGPFTLQTAVDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGR 360
KKYYPPGIIGPFTLQT VDKDLNFYI+DVAPRTGGGTNIHM+MGHPYGNSLWR PMSTGR
Sbjct: 304 KKYYPPGIIGPFTLQTVVDKDLNFYIFDVAPRTGGGTNIHMSMGHPYGNSLWRSPMSTGR 363
Query: 361 RIALEIKRAIELDELEKIVT 380
RIALEIKR IELDELEK+VT
Sbjct: 364 RIALEIKRGIELDELEKLVT 383
>gb|AAK40582.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 349
Score = 300 bits (761), Expect = 1e-80
Identities = 166/364 (45%), Positives = 227/364 (61%), Gaps = 19/364 (5%)
Query: 19 ITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFRMRKTRDGLVKGFIDEVIV 78
+ I + SHSALD+ DGAK+EG T+ + ++GR R Y ++ K +D+ I+
Sbjct: 3 VKIAALASHSALDVFDGAKDEGFQTIGLCKKGRERPYLEF-----------KAIMDKCII 51
Query: 79 LDKFAQII--EIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLVPMFGTRSLLRTEERSE 136
L+ F +II ++Q L N I VPNRS VY G D +E + +FG R +LR EER
Sbjct: 52 LEDFKEIISDKVQSILLSENAIIVPNRSLAVYVGYDGIE-KMKTKVFGNRYMLRWEERIG 110
Query: 137 EKSYYWLLEKAKLPYPEPVSPEEIDDVGLVIVKLPHAKKRLERGFFTAASYKEFKEKSEK 196
EK+YY +L +AK+ P+ PEEID VIVKLP AK+++ERGFF A + ++F+ K +
Sbjct: 111 EKNYYKILNEAKISIPKLFKPEEIDRP--VIVKLPEAKRKVERGFFFAVNKEDFEAKLNE 168
Query: 197 LIRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGIDWRFETSLDGHVRLPA 256
L+R VI E L IE ++ G FN ++FYSPI +EL+ +D R ++ D RLPA
Sbjct: 169 LLRNNVIDNEGLKNMVIEEFVFGAHFNLNYFYSPIFNRLELISVDRRIQSDWDSLYRLPA 228
Query: 257 AQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEATKKYYPPGIIGPFTLQT 316
Q+ L P+ GH T+RESLLEKVF++ ++V+AT+K PPGIIGPFTLQ
Sbjct: 229 DIQIKLGRI---PKLIEVGHEPVTIRESLLEKVFEIGYRFVDATQKLEPPGIIGPFTLQV 285
Query: 317 AVDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGRRIALEIKRAIELDELE 376
V DL+ +YDVAPR GGGTN++M G Y + KP+S GRRIALEIK AI + E
Sbjct: 286 MVTPDLDLVVYDVAPRIGGGTNVYMGTGSQYSKFYFGKPISLGRRIALEIKHAIINNLTE 345
Query: 377 KIVT 380
KI+T
Sbjct: 346 KILT 349
>sp|Q57600|Y136_METJA HYPOTHETICAL PROTEIN MJ0136 >gi|2127996|pir||H64316 conserved
hypothetical protein MJ0136 - Methanococcus jannaschii
>gi|1498904|gb|AAB98117.1| (U67470) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 361
Score = 299 bits (757), Expect = 4e-80
Identities = 170/384 (44%), Positives = 246/384 (63%), Gaps = 27/384 (7%)
Query: 1 MITREQVLEVLEKYDKDKITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFR 60
MI+++++LE+ +KY+KD+ITI +GSH++L I GAK EG T+ + +GR Y+++
Sbjct: 1 MISKDEILEIFDKYNKDEITIATLGSHTSLHILKGAKLEGFSTVCITMKGRDVPYKRF-- 58
Query: 61 MRKTRDGLVKGFIDEVIVLDKFAQII--EIQEELRKRNVIFVPNRSFVVYTGIDRVENEF 118
D+ I +D F+ I EIQE+LR+ N I VP+ SF+ Y G+D VEN F
Sbjct: 59 ----------KVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNVENSF 108
Query: 119 LVPMFGTRSLLRTE-ERSEEKSYYWLLEKAKLPYPEPV-SPEEIDDVGLVIVKLPHAKKR 176
LVPMFG R +LR E ERS E LL +A L P+ SPE+ID G VIVK P A R
Sbjct: 109 LVPMFGNRRILRWESERSLEGK---LLREAGLRVPKKYESPEDID--GTVIVKFPGA--R 161
Query: 177 LERGFFTAASYKEFKEKSEKLIRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIE 236
RG+F A+S +EF +K+E L + G++T ED+A A IE Y++G F +FYSP+ E+E
Sbjct: 162 GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVE 221
Query: 237 LLGIDWRFETSLDGHVRLPAAQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKY 296
LLG+D R+E+++DG VR+PA QL E P Y + G+ +RESLL +VF+M +K
Sbjct: 222 LLGMDKRYESNIDGLVRIPAKDQL---EMNINPSYVITGNIPVVIRESLLPQVFEMGDKL 278
Query: 297 VEATKKYYPPGIIGPFTLQTAVDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPM 356
V K+ PPG+IGPF LQ+ +++L +++++ R GGTN M G PY +P+
Sbjct: 279 VAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSARVDGGTNSFM-NGGPYSFLYNGEPL 337
Query: 357 STGRRIALEIKRAIELDELEKIVT 380
S G+RIA EIK A++LD ++KI++
Sbjct: 338 SMGQRIAREIKMALQLDMIDKIIS 361
>pir||D69027 conserved hypothetical protein MTH1201 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622310|gb|AAB85690.1| (AE000888) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 377
Score = 287 bits (726), Expect = 2e-76
Identities = 164/383 (42%), Positives = 238/383 (61%), Gaps = 27/383 (7%)
Query: 2 ITREQVLEVLEKYDKDKITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFRM 61
+ R+++L++LE Y ++ IT+ +GSH++L I +GAK+EG T VV ++GR Y++ FR+
Sbjct: 18 VNRDEILDILEGYSREDITVATLGSHTSLHILNGAKQEGFKTAVVCEKGREVPYQR-FRV 76
Query: 62 RKTRDGLVKGFIDEVIVLDKFAQII--EIQEELRKRNVIFVPNRSFVVYTGIDRVENEFL 119
DE I++DKF+ I+ ++Q+ELR N I VP+ SFV Y G+D +EN+F
Sbjct: 77 A-----------DEFIMVDKFSDIVNDDVQDELRSMNSIIVPHGSFVAYAGLDHIENDFY 125
Query: 120 VPMFGTRSLLRTE-ERSEEKSYYWLLEKAKLPYP-EPVSPEEIDDVGLVIVKLPHAKKRL 177
VPMFG R +LR E ER E+ L+E+A + P + PEEID V+VK P A R
Sbjct: 126 VPMFGNRDILRWESERDLERK---LMEEAGIRIPFKYTDPEEIDRT--VMVKFPGA--RG 178
Query: 178 ERGFFTAASYKEFKEKSEKLIRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIEL 237
RG+F A+S +EF EK + ++ G IT +D+ A IE YI G F +FYS ++ E+EL
Sbjct: 179 GRGYFVASSTEEFNEKIDSMLERGWITEDDVKDAHIEEYIAGTNFCIHYFYSIMNDEVEL 238
Query: 238 LGIDWRFETSLDGHVRLPAAQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYV 297
+G+D RFE+++DG VR+PA QL + +P Y + G+ +RESLL + FDM ++ V
Sbjct: 239 MGMDSRFESNIDGLVRIPARDQLDI---NLDPSYVITGNHPVAMRESLLPQAFDMGDRMV 295
Query: 298 EATKKYYPPGIIGPFTLQTAVDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMS 357
EA K PPG+ GPF LQT +L ++++ RT GGTN M G Y L + MS
Sbjct: 296 EAASKIVPPGMNGPFCLQTMCTDNLEIVTFEMSARTDGGTNTFM-HGSTYSYLLHGEGMS 354
Query: 358 TGRRIALEIKRAIELDELEKIVT 380
GRR+A EI+ A E D L +I+T
Sbjct: 355 MGRRVAREIRVAAEQDRLPEIIT 377
>gi|11497872 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429228|pir||H69281 conserved hypothetical protein
AF0256 - Archaeoglobus fulgidus
>gi|2650382|gb|AAB90975.1| (AE001088) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 373
Score = 254 bits (642), Expect = 1e-66
Identities = 160/383 (41%), Positives = 222/383 (57%), Gaps = 39/383 (10%)
Query: 17 DKITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFRMRKTRDGLVKGFIDEV 76
+ +TIG+ GSHSA ++ AK G T++V QRGR + Y KY R DEV
Sbjct: 11 EDVTIGIFGSHSAKEVGMAAKAWGFKTVIVVQRGRDKLYTKYNRH----------LYDEV 60
Query: 77 IVLDKFAQII--EIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLVPMFGTRSLLRTEER 134
I+++KF I+ EIQE+L + N IF+PNRSF VY G D +E EF VP++G R +LR EER
Sbjct: 61 IMVEKFKDILNREIQEKLLELNTIFIPNRSFAVYVGYDGIEKEFEVPIYGNRFMLRAEER 120
Query: 135 SEEKSYYWLLEKAKLPYP-EPVSPEEIDDVGLVIVKLPHAKKRLERGFFTAASYKEFKEK 193
+ K+ Y+LLEKA L YP E SPEEID LVIVK+ AK LER FF A S +++ E+
Sbjct: 121 NHPKNQYYLLEKAGLRYPKEFKSPEEID--RLVIVKVQQAKNPLERAFFYAVSPEDYYEQ 178
Query: 194 SEKLIRLGVITREDLAKARIERYIIGPVFNFDFF---YSPIDGEIELLGIDWRFETSLDG 250
+E+L++ GVI E L KARIE Y++G FN +F + G + +G R + +L G
Sbjct: 179 AERLLKEGVIDEEGLKKARIEEYVLGARFNANFHSYALKDVFGNFDFVGFSDRRQVNLQG 238
Query: 251 HVRLPAAQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEATKKYYPPGIIG 310
+ LPA QL + + GH T+RES ++V++ AEK++EA K +PPGIIG
Sbjct: 239 FLNLPAKDQLKI---NVPVKNEEIGHFGVTMRESKQQEVYEAAEKFIEACKAEFPPGIIG 295
Query: 311 PFTLQTAV------DKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGRRI-- 362
F LQ A+ + L F I+DV+ R G I P + + G +I
Sbjct: 296 MFGLQGAMAYSPEDETKLEFVIFDVSFRVPGDPAI-----GPTSPEMRNLTLKHGVKIED 350
Query: 363 -----ALEIKRAIELDELEKIVT 380
+EIK+A+EL +E+IVT
Sbjct: 351 PLDLTMMEIKKAMELKRMEEIVT 373
>gi|11497733 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429227|pir||A69264 conserved hypothetical protein
AF0113 - Archaeoglobus fulgidus
>gi|2650530|gb|AAB91114.1| (AE001098) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 359
Score = 238 bits (602), Expect = 6e-62
Identities = 142/380 (37%), Positives = 223/380 (58%), Gaps = 30/380 (7%)
Query: 4 REQVLEVLEKYDKDKITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFRMRK 63
R+++L VLE YDK I IG IGSHSAL+I GAK+EG T+ + + + YE +
Sbjct: 5 RDKILSVLEDYDKANIHIGTIGSHSALNILKGAKDEGFSTVCICREREKKVYESF----- 59
Query: 64 TRDGLVKGFIDEVIVLDKFAQIIE--IQEELRKRNVIFVPNRSFVVYTGIDRVENEFLVP 121
G D+ +++ ++ +++ IQEELR N I +P+ SF Y G + L+P
Sbjct: 60 -------GVADKFVIVSDYSDLLDENIQEELRHLNTILIPHGSFNAYIG---KFDSLLLP 109
Query: 122 MFGTRSLLRTE-ERSEEKSYYWLLEKAKLPYPEPVS-PEEIDDVGLVIVKLPHAKKRLER 179
MFG R L+ E +R ++ + LE++ + P+ S PEEI+ GL IVK P AK +
Sbjct: 110 MFGNRELMIWETDRDRQREW---LERSGVRMPKKYSRPEEIE--GLAIVKYPGAKGG--K 162
Query: 180 GFFTAASYKEFKEKSEKLIRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLG 239
G+F +S +EF E S+++++ G+I ED+ A I+ YI+G F FFYSP+ G +EL+
Sbjct: 163 GYFIVSSPEEFYEISDEMVKKGLIGEEDIKNAEIQEYILGANIYFSFFYSPVYGRVELIA 222
Query: 240 IDWRFETSLDGHVRLPAAQQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEA 299
+D R+E++ D ++PA +Q+ P YTV G+ LRESLL + F+ AE VE
Sbjct: 223 VDRRYESTADALGKVPAKEQIRA---NINPTYTVIGNFPVVLRESLLVQAFEAAEGIVEV 279
Query: 300 TKKYYPPGIIGPFTLQTAVDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTG 359
+K+ PG++G F +++ D++ Y+++++ R GTN+ + PY L+ + M G
Sbjct: 280 SKEIAYPGMVGAFCIESIFDENALMYVFEISARIVAGTNVGIPTS-PYSYILFGENMYMG 338
Query: 360 RRIALEIKRAIELDELEKIV 379
RRIA EIK A E D L +++
Sbjct: 339 RRIAREIKLAAEKDMLGELI 358
>pir||F71006 hypothetical protein PH1348 - Pyrococcus horikoshii
>gi|3257771|dbj|BAA30454.1| (AP000006) 333aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 333
Score = 202 bits (508), Expect = 6e-51
Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 32/363 (8%)
Query: 19 ITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFRMRKTRDGLVKGFIDEVIV 78
+ I SHSAL I GAK+EG T+ + Y KYF V
Sbjct: 2 VRIATYASHSALQILKGAKDEGFGTIAFGKPRVKLLYTKYFP-----------------V 44
Query: 79 LDKFAQIIEIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLVPMFGTRSLLRTE-ERSEE 137
D F + +++L + + + +P SF+ + G++ VE + VP FG + +L+ E +RS E
Sbjct: 45 ADYFLEGDYPEDKLLELDAVVIPTGSFIAHLGVELVE-KMRVPYFGNKEVLKWESDRSLE 103
Query: 138 KSYYWLLEKAKLPYPEPVSPEEIDDVGLVIVKLPHAKKRLERGFFTAASYKEFKEKSEKL 197
+ + LEKAKL P E+ DD+ ++ PH K RG+F A S K+F EK+EK
Sbjct: 104 RKW---LEKAKLTLPRIY--EDPDDIDRPVIVKPHGAKG-GRGYFIAKSSKDFWEKAEKF 157
Query: 198 IRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGIDWRFETSLDGHVRLPAA 257
LG+ ++EDL +I+ Y++G +FYS I GE+EL+ ID R+E+++D R+P+
Sbjct: 158 --LGIRSKEDLKNVQIQEYVVGVPIYPHYFYSKITGELELMSIDRRYESNVDAIGRIPSR 215
Query: 258 QQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEATKKYYPPGIIGPFTLQTA 317
+QL L + YTV G+ LRESLL V + E+ V+A+++ G+ GPF L+
Sbjct: 216 EQLDL---DLDVTYTVVGNIPLVLRESLLMDVIEAGERVVKASEELM-GGLWGPFCLEGV 271
Query: 318 VDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGRRIALEIKRAIELDELEK 377
D+ F +++++ R GTN+ + G PY + +PMSTGRRIA EIK AIE +LE+
Sbjct: 272 FTPDMEFVVFEISARIVAGTNLFI-NGSPYTWLKYDEPMSTGRRIAREIKIAIEEGKLEE 330
Query: 378 IVT 380
+VT
Sbjct: 331 VVT 333
>gb|AAK40581.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 191 bits (481), Expect = 9e-48
Identities = 125/361 (34%), Positives = 192/361 (52%), Gaps = 27/361 (7%)
Query: 21 IGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFRMRKTRDGLVKGFIDEVIVLD 80
I IGSHSAL I GAK+EG T+V+ R Y+ + FID +
Sbjct: 22 IATIGSHSALQILHGAKKEGFQTMVITDNKRENFYKNF------------SFIDNIYAYA 69
Query: 81 KFAQIIEIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLVPMFGTRSLLRTEERSEEKSY 140
+ + I ++ ++ +P+ S V Y G +RV+ + +FG + + E +++K
Sbjct: 70 SLDEAVSIINGIKDYGIL-IPHGSLVEYLGKERVD-KIETKIFGNKKIFEWE--ADQKKK 125
Query: 141 YWLLEKAKLPYPEPVS-PEEIDDVGLVIVKLPHAKKRLERGFFTAASYKEFKEKSEKLIR 199
LL K+ + PE PE++D LVIVKL AK +G+F A + E KE +KLI
Sbjct: 126 MELLRKSNIKIPEIFERPEDVDR--LVIVKLNGAKGG--KGYFLARNKSEVKEGIQKLIE 181
Query: 200 LGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGIDWRFETSLDGHVRLPAAQQ 259
+I E+ + I+ Y++G F FFYS I E+ GID R+ET++DG RLP
Sbjct: 182 SKMIRDEN--EVIIQEYVVGVPMYFQFFYSDIINRTEIFGIDIRYETNIDGLRRLPFEY- 238
Query: 260 LTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEATKKYYPPGIIGPFTLQTAVD 319
+ E + P + V G+ + RESLL + A +V TK+ PPG+IGPF L++ +
Sbjct: 239 --MKELKINPTFVVVGNIPAVARESLLPVALEYANNFVRTTKELVPPGMIGPFCLESIIT 296
Query: 320 KDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGRRIALEIKRAIELDELEKIV 379
+ + +++ + R GTN+++ G PY W +PMS GRRIA EI+ A E D+L +V
Sbjct: 297 DNSDIVVFEFSGRIVAGTNLYV-NGSPYSWLYWDEPMSIGRRIAREIRVANEKDKLSLVV 355
Query: 380 T 380
+
Sbjct: 356 S 356
>pir||B75125 hypothetical protein PAB0547 - Pyrococcus abyssi (strain Orsay)
>gi|5458226|emb|CAB49715.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 337
Score = 188 bits (473), Expect = 8e-47
Identities = 127/363 (34%), Positives = 197/363 (53%), Gaps = 32/363 (8%)
Query: 19 ITIGVIGSHSALDIADGAKEEGLPTLVVAQRGRHRTYEKYFRMRKTRDGLVKGFIDEVIV 78
+ I SHSAL I GAK+EG T+ Y KYF + + +
Sbjct: 6 VRIATYASHSALQILKGAKDEGFETIAFGSERVKPLYTKYFP------------VADYFL 53
Query: 79 LDKFAQIIEIQEELRKRNVIFVPNRSFVVYTGIDRVENEFLVPMFGTRSLLRTE-ERSEE 137
+ K+ + +EL + N + +P SFV + G++ VE VP FG + +L+ E +R+ E
Sbjct: 54 VGKYPE-----DELLELNAVVIPTGSFVAHLGVELVER-MKVPYFGNKRVLKWESDRNLE 107
Query: 138 KSYYWLLEKAKLPYPEPVSPEEIDDVGLVIVKLPHAKKRLERGFFTAASYKEFKEKSEKL 197
+ + LEKAKL P ++ DD+ ++ PH K RG+F A ++F K EK
Sbjct: 108 RKW---LEKAKLKLPRVY--DDPDDIDRPVIVKPHGAKG-GRGYFIAKDPQDFWTKVEKF 161
Query: 198 IRLGVITREDLAKARIERYIIGPVFNFDFFYSPIDGEIELLGIDWRFETSLDGHVRLPAA 257
LG+ +EDL +I+ Y+IG +FYS + E+EL+ ID R+E+++D R+P+
Sbjct: 162 --LGIKDKEDLKNVQIQEYVIGVPVYPHYFYSKLTRELELMSIDRRYESNVDAIGRIPSK 219
Query: 258 QQLTLPEWQFEPEYTVCGHASSTLRESLLEKVFDMAEKYVEATKKYYPPGIIGPFTLQTA 317
QL E + + YTV G+ LRESLL V + E+ V+A ++ G+ GPF L+
Sbjct: 220 DQL---ELELDITYTVIGNIPLVLRESLLMDVIEAGERTVKAAEELM-GGLWGPFCLEGV 275
Query: 318 VDKDLNFYIYDVAPRTGGGTNIHMAMGHPYGNSLWRKPMSTGRRIALEIKRAIELDELEK 377
DL+F +++++ R GTN G PY + +PMSTGRRIA EI+ AIE D+L++
Sbjct: 276 FTPDLDFVVFEISARIVAGTN-PFINGSPYTWLKYDEPMSTGRRIAREIRLAIEEDKLDE 334
Query: 378 IVT 380
+V+
Sbjct: 335 VVS 337
>sp|P14027|YRP8_METVA HYPOTHETICAL 26.3 KD PROTEIN IN RPS10 3'REGION (ORF 3/4)
Length = 230
Score = 139 bits (346), Expect = 6e-32
Identities = 78/217 (35%), Positives = 126/217 (57%), Gaps = 8/217 (3%)
Query: 162 DVGLVIVKLPHAKKRLERGFFTAASYKEFKEKSEKLIRLGVITREDLAKARIERYIIGPV 221
D+G+V+ + K E F EF K GV++ ED+ KA I+ Y++G
Sbjct: 10 DLGIVLTASHNPK---EYTGFKMCDIFEFWRKINDFKAKGVLSEEDVKKAHIDEYVVGAN 66
Query: 222 FNFDFFYSPIDGEIELLGIDWRFETSLDGHVRLPAAQQLTLPEWQFEPEYTVCGHASSTL 281
+ +FYSP+ +EL+GID R+E+S+DG VR+P+ QL E +P Y + G+ +
Sbjct: 67 YCIHYFYSPLKDRVELMGIDRRYESSIDGLVRVPSKDQL---ELDIDPSYLITGNFPVVI 123
Query: 282 RESLLEKVFDMAEKYVEATKKYYPPGIIGPFTLQTAVDKDLNFYIYDVAPRTGGGTNIHM 341
RESLL +VFDM +K + ++ PG++GPF LQ+ ++L +++++ R+ GG N M
Sbjct: 124 RESLLPQVFDMGDKLCKKAEELVIPGMLGPFCLQSLCTENLELVVFEMSARSDGGNNTFM 183
Query: 342 AMGHPYGNSLWRKPMSTGRRIALEIKRAIELDELEKI 378
G PY +P+S G+RIA + + A+EL +EK+
Sbjct: 184 -NGSPYSYLYNAEPLSMGQRIA-KNQLALELKMIEKL 218
>pir||QQMX3 hypothetical protein 3 - Methanococcus vannielii
>gi|44789|emb|CAA34094.1| (X15972) ORF 3 (AA 1-132)
[Methanococcus vannielii]
Length = 132
Score = 73.0 bits (176), Expect = 5e-12
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 162 DVGLVIVKLPHAKKRLERGFFTAASYKEFKEKSEKLIRLGVITREDLAKARIERYIIGPV 221
D+G+V+ + K E F EF K GV++ ED+ KA I+ Y++G
Sbjct: 10 DLGIVLTASHNPK---EYTGFKMCDIFEFWRKINDFKAKGVLSEEDVKKAHIDEYVVGAN 66
Query: 222 FNFDFFYSPIDGEIELLGIDWRFETSLDGHVRLPAAQQLTLPEWQFEPEY 271
+ +FYSP+ +EL+GID R+E+S+DG VR+P+ QL E +P Y
Sbjct: 67 YCIHYFYSPLKDRVELMGIDRRYESSIDGLVRVPSKDQL---ELDIDPSY 113
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147218316
Number of Sequences: 2977
Number of extensions: 6621638
Number of successful extensions: 15234
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15186
Number of HSP's gapped (non-prelim): 12
length of query: 380
length of database: 189,106,746
effective HSP length: 55
effective length of query: 325
effective length of database: 156,189,961
effective search space: 50761737325
effective search space used: 50761737325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)