BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1273 (PAB1273) DE:Hypothetical protein
(364 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75012 hypothetical protein PAB1273 - Pyrococcus abyssi (st... 699 0.0
pir||B71139 hypothetical protein PH0325 - Pyrococcus horikoshii ... 545 e-154
gb|AAK42695.1| Membrane conserved hypothetical protein [Sulfolob... 210 3e-53
emb|CAC11215.1| (AL445063) conserved hypothetical membrane prote... 164 2e-39
pir||D72566 hypothetical protein APE1814 - Aeropyrum pernix (str... 101 1e-20
pir||H72370 conserved hypothetical protein - Thermotoga maritima... 83 6e-15
pir||F75375 nodulin 21-related protein - Deinococcus radiodurans... 76 4e-13
gb|AAK43343.1| Conserved hypothetical protein [Sulfolobus solfat... 71 1e-11
pir||T34870 probable membrane protein - Streptomyces coelicolor ... 69 1e-10
>pir||E75012 hypothetical protein PAB1273 - Pyrococcus abyssi (strain Orsay)
>gi|5459053|emb|CAB50539.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 364
Score = 699 bits (1785), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MDKMIRLAMEFYKNELSDSVLYAELAKYEKDEKVREEFLRLSRIEAQHAKFWERFLEKRG 60
MDKMIRLAMEFYKNELSDSVLYAELAKYEKDEKVREEFLRLSRIEAQHAKFWERFLEKRG
Sbjct: 1 MDKMIRLAMEFYKNELSDSVLYAELAKYEKDEKVREEFLRLSRIEAQHAKFWERFLEKRG 60
Query: 61 VKPEKPSVGKIKRFSVRLLRRLLGPGLTVSFLEMGENNAINSYFNFLVSNAKAFDEEEVK 120
VKPEKPSVGKIKRFSVRLLRRLLGPGLTVSFLEMGENNAINSYFNFLVSNAKAFDEEEVK
Sbjct: 61 VKPEKPSVGKIKRFSVRLLRRLLGPGLTVSFLEMGENNAINSYFNFLVSNAKAFDEEEVK 120
Query: 121 ALKMIIFEELEHEKFFSEAKKRFHVENLRDFVLGMNDGLVEILGAVTGLSAVYPNLPRLV 180
ALKMIIFEELEHEKFFSEAKKRFHVENLRDFVLGMNDGLVEILGAVTGLSAVYPNLPRLV
Sbjct: 121 ALKMIIFEELEHEKFFSEAKKRFHVENLRDFVLGMNDGLVEILGAVTGLSAVYPNLPRLV 180
Query: 181 GISGLIVGVAGALSMAIGALISVRSQRQVSESIRNRTKIIFQVSPERAVQEIYERLREGG 240
GISGLIVGVAGALSMAIGALISVRSQRQVSESIRNRTKIIFQVSPERAVQEIYERLREGG
Sbjct: 181 GISGLIVGVAGALSMAIGALISVRSQRQVSESIRNRTKIIFQVSPERAVQEIYERLREGG 240
Query: 241 LPEDIAREVSEKLSQRGEAVIKLLVPEEDENEFRAALYTGVAYLFGVMFPITPYFLASSS 300
LPEDIAREVSEKLSQRGEAVIKLLVPEEDENEFRAALYTGVAYLFGVMFPITPYFLASSS
Sbjct: 241 LPEDIAREVSEKLSQRGEAVIKLLVPEEDENEFRAALYTGVAYLFGVMFPITPYFLASSS 300
Query: 301 LTALPLSVTLAGLALAIVATSISLISGISIRKKVAEMVVTGLGAAFLSYLFGHLMESIFH 360
LTALPLSVTLAGLALAIVATSISLISGISIRKKVAEMVVTGLGAAFLSYLFGHLMESIFH
Sbjct: 301 LTALPLSVTLAGLALAIVATSISLISGISIRKKVAEMVVTGLGAAFLSYLFGHLMESIFH 360
Query: 361 VSAL 364
VSAL
Sbjct: 361 VSAL 364
>pir||B71139 hypothetical protein PH0325 - Pyrococcus horikoshii
>gi|3256716|dbj|BAA29399.1| (AP000002) 364aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 364
Score = 545 bits (1388), Expect = e-154
Identities = 274/364 (75%), Positives = 319/364 (87%)
Query: 1 MDKMIRLAMEFYKNELSDSVLYAELAKYEKDEKVREEFLRLSRIEAQHAKFWERFLEKRG 60
M I++A EFY +E SDSVLYAELAKYEK+++++EEFLRLSR+EA+HAKFW FL +RG
Sbjct: 1 MSSAIKIAEEFYNDEYSDSVLYAELAKYEKNKEIKEEFLRLSRMEAKHAKFWHDFLVRRG 60
Query: 61 VKPEKPSVGKIKRFSVRLLRRLLGPGLTVSFLEMGENNAINSYFNFLVSNAKAFDEEEVK 120
VKP+KP + K+ F+V+LLR+L GP + VS LEMGEN+AI YF F + EEE +
Sbjct: 61 VKPKKPRIKKLTFFTVKLLRKLFGPAMVVSMLEMGENSAIQKYFKFFGEFSDEITEEEFE 120
Query: 121 ALKMIIFEELEHEKFFSEAKKRFHVENLRDFVLGMNDGLVEILGAVTGLSAVYPNLPRLV 180
L+ II +ELEHEKFFSE+KK FHVEN+RDFVLGMNDGLVEILGAVTGLSAVYPN PRLV
Sbjct: 121 GLRGIIIDELEHEKFFSESKKLFHVENIRDFVLGMNDGLVEILGAVTGLSAVYPNSPRLV 180
Query: 181 GISGLIVGVAGALSMAIGALISVRSQRQVSESIRNRTKIIFQVSPERAVQEIYERLREGG 240
GISGLIVGVAGALSM IGALISVRSQRQVSE+IR RTKI+F+VSPE+A +E+YE+L EGG
Sbjct: 181 GISGLIVGVAGALSMGIGALISVRSQRQVSEAIRERTKILFKVSPEKAKEELYEKLVEGG 240
Query: 241 LPEDIAREVSEKLSQRGEAVIKLLVPEEDENEFRAALYTGVAYLFGVMFPITPYFLASSS 300
LPE+IAREVSEKL ++ EA+IKLLVPEE+ENEFRAALYTG+AYLFGV FP+TPYF AS+S
Sbjct: 241 LPEEIAREVSEKLLEKEEAIIKLLVPEEEENEFRAALYTGIAYLFGVAFPVTPYFFASTS 300
Query: 301 LTALPLSVTLAGLALAIVATSISLISGISIRKKVAEMVVTGLGAAFLSYLFGHLMESIFH 360
L ALP+SVTLAGLALAIVATSISLISGISIRKKV EMV TGLGAAFLSY+FGH+MES+F+
Sbjct: 301 LRALPISVTLAGLALAIVATSISLISGISIRKKVIEMVTTGLGAAFLSYIFGHIMESLFN 360
Query: 361 VSAL 364
VSAL
Sbjct: 361 VSAL 364
>gb|AAK42695.1| Membrane conserved hypothetical protein [Sulfolobus solfataricus]
Length = 355
Score = 210 bits (528), Expect = 3e-53
Identities = 131/364 (35%), Positives = 205/364 (55%), Gaps = 12/364 (3%)
Query: 1 MDKMIRLAMEFYKNELSDSVLYAELAKYEKDEKVREEFLRLSRIEAQHAKFWERFLEKRG 60
M K+ + ++ Y+ EL D +Y++LA+ E+D ++++ +L+ +E +H++FW EKRG
Sbjct: 1 MRKLENIILKNYEEELFDHEVYSKLAEVERDPELKKTLFKLAEMEKKHSEFWREIAEKRG 60
Query: 61 --VKPEKPSVGKIKRFSVRLLRRLLGPGLTVSFLEMGENNAINSYFNFLVSNAKAFDEEE 118
VK + ++ KIK LLR++LG +T+ LE E + I Y +S + F EE
Sbjct: 61 LKVKGKLSTLNKIKVDFYSLLRKILGLDITIKVLESSEEDDIEKYRK--LSEMEMFSSEE 118
Query: 119 VKALKMIIFEELEHEKFFSEAKKRFHVENLRDFVLGMNDGLVEILGAVTGLSAVYPNLPR 178
+ LK I+ +E HEK + + ++ DFV G++DGLVE+L AV+GLS + P
Sbjct: 119 KQRLKDIMVDEAVHEKVLGNVEAK----SVGDFVYGISDGLVEVLAAVSGLSGAISS-PL 173
Query: 179 LVGISGLIVGVAGALSMAIGALISVRSQRQVSESIRNRTKIIFQVSPERAVQEIYERLRE 238
V + GLIVGV+G LSMAIGA +S +S++ V R R ++ V + E
Sbjct: 174 FVAVGGLIVGVSGTLSMAIGAYLSTKSEKDVKIQERKRLELEKNVDQHSVQLRLVNFFTE 233
Query: 239 GGLPEDIAREVSEKLSQRGEAVIKLLVPEEDENEFRAALYTGVAYLFGVMFPITPYFLAS 298
G+ ++A++VS L E + L PE EN ++AL TG++Y+ G + PI PY +
Sbjct: 234 LGVNLNLAKKVSLSLVNVAEDI---LYPEVKENPVKSALITGLSYITGAIIPILPYLIGL 290
Query: 299 SSLTALPLSVTLAGLALAIVATSISLISGISIRKKVAEMVVTGLGAAFLSYLFGHLMESI 358
S LT L S +AGL+ IV + I ++SGIS KK +M L AA ++ G+L
Sbjct: 291 SGLTGLITSYIVAGLSTFIVGSIIGILSGISPFKKGIQMASLALLAALGTHGLGYLASRF 350
Query: 359 FHVS 362
+VS
Sbjct: 351 LNVS 354
>emb|CAC11215.1| (AL445063) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 326
Score = 164 bits (410), Expect = 2e-39
Identities = 110/367 (29%), Positives = 182/367 (48%), Gaps = 44/367 (11%)
Query: 1 MDKMIRLAMEFYKNELSDSVLYAELAKYEKDEKVREEFLRLSRIEAQHAKFWERFLEKRG 60
MD ++ +FY +EL+D Y+ L++ KD+ +RE RLS IE +H+ FW + LEK G
Sbjct: 1 MDADVKQWSDFYHDELTDMTFYSILSRKIKDDYLRENLSRLSGIEKEHSDFWRQNLEKAG 60
Query: 61 VKPEKPSVGKIKRFSVRLLRRLLGPGLTVSFLEMGENNAINSYFNFLVSNAKAFDEEEVK 120
V P+ P+ ++K F + LR LG LT LE GE N + Y +L DE+
Sbjct: 61 VNPQ-PTYNRLKVFFLVFLRHFLGVFLTARLLEHGEINTVRVYSEYL--KRPDLDEDFRL 117
Query: 121 ALKMIIFEELEHEKFFSEA--KKRFHVENLRDFVLGMNDGLVEILGAVTGL-SAVYPNLP 177
L+ I+ EE+EHE+ F +A K +E +D + G++DGLVE+L A+ GL S + N+
Sbjct: 118 RLQEILDEEIEHEEIFEKAMEKSSDTIERNKDMIYGISDGLVEVLAALAGLTSIIVSNID 177
Query: 178 RLVGISGLIVGVAGALSMAIGALISVRSQRQVSESIRNRTKIIFQVSPERAVQEIYERLR 237
+ + GL+VG++G SM+IGA +S +S+ + + + KI+F+
Sbjct: 178 --IALGGLVVGISGTASMSIGAYLSKKSETEY-KLVEEEKKILFR--------------- 219
Query: 238 EGGLPEDIAREVSEKLSQRGEAVIKLLVPEEDENEFRAALYTGVAYLFGVMFPITPYFLA 297
+D+ + + + +ALY GV+Y+ G PI P F+
Sbjct: 220 ----KKDVDMDYINSIKSESKT---------------SALYVGVSYILGAAVPILP-FVF 259
Query: 298 SSSLTALPLSVTLAGLALAIVATSISLISGISIRKKVAEMVVTGLGAAFLSYLFGHLMES 357
S AL +S+ L + ++L + I + + L AAF++++ G
Sbjct: 260 LSKYIALAVSIVLVFVVQGFTNAIVALSVNVGIFRMAIRASLLALLAAFITFMVGFSFHY 319
Query: 358 IFHVSAL 364
H+S +
Sbjct: 320 FLHISII 326
>pir||D72566 hypothetical protein APE1814 - Aeropyrum pernix (strain K1)
>gi|5105504|dbj|BAA80817.1| (AP000062) 328aa long
hypothetical protein [Aeropyrum pernix]
Length = 328
Score = 101 bits (249), Expect = 1e-20
Identities = 93/355 (26%), Positives = 150/355 (42%), Gaps = 71/355 (20%)
Query: 8 AMEFYKNELSDSVLYAELAKYEKDEKVREEFLRLSRIEAQHAKFWERFLEKRGVKPEKPS 67
A F ++E D V+Y+ L+ E DE+ R ++ E +H +FW+ + K +
Sbjct: 36 ARRFCEDEYIDYVVYSYLSSIEGDEENRRILREMAEQEYRHYEFWKELVGSDC----KVN 91
Query: 68 VGKIKRFSVRLLRRLLGPGLTVSFLEMGENNAINSYFNFLVSNAKAFDEEEVKALKMIIF 127
V +I+ + +RR++G TV FLE E I SY FL + + E + L+ II
Sbjct: 92 VSRIRLAVLGFMRRIMGVTFTVKFLERHEKEVIESYKRFL----EHLEGETRRRLEEIIE 147
Query: 128 EELEHEKFFSEAKKRFHVENLRDFVLGMNDGLVEILGAVTG-LSAVYPNLPRLVGISGLI 186
+E+ HE + V L LG+ D +VEI G G L A L + G++GLI
Sbjct: 148 DEISHENYLISRINESIVRYLGFIALGLADAIVEITGVHAGFLGATATTL--VAGVAGLI 205
Query: 187 VGVAGALSMAIGALISVRSQRQVSESIRNRTKIIFQVSPERAVQEIYERLREGGLPEDIA 246
VG++ A+SMA A + + +E LP IA
Sbjct: 206 VGLSAAISMAAAAYLQAK----------------------------HESSTTAPLPSAIA 237
Query: 247 REVSEKLSQRGEAVIKLLVPEEDENEFRAALYTGVAYLFGVMFPITPYFLASSSLTALPL 306
++ AV+ L +P YF+ S++ A
Sbjct: 238 TGIAYFF-----AVVTLALP---------------------------YFITHSNILAFVA 265
Query: 307 SVTLAGLALAIVATSISLISGISIRKKVAEMVVTGLGAAFLSYLFGHLMESIFHV 361
SV LA ++I S+I+ S R+++ E + G A +Y+FG ++ IF +
Sbjct: 266 SVMLAVALISIFVFYSSVINETSFRREIVENLGVLFGTAAAAYIFGDVLGRIFGI 320
>pir||H72370 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981008|gb|AAD35582.1|AE001726_16 (AE001726)
conserved hypothetical protein [Thermotoga maritima]
Length = 284
Score = 82.7 bits (201), Expect = 6e-15
Identities = 64/204 (31%), Positives = 102/204 (49%), Gaps = 17/204 (8%)
Query: 9 MEFYKNELSDSVLYAELAKYEKDEKVREEFLRLSRIEAQHAKFWERFLEKRGVKPEKPSV 68
++F KNE+++ +Y +L+K ++K E L ++ E H +E+ G K KPS
Sbjct: 5 LDFQKNEITEYHVYRKLSK-RTNKKNAEILLAIAEDEKSH---YEKLKNITG-KDVKPSY 59
Query: 69 GKIKRFSVRLLRRLLGPGLTVSFLEMGENNAINSYFNFLVSNAKAFDEEEVKALKMIIFE 128
I+ F LL L G T+ +E E A +Y E+E + I+ +
Sbjct: 60 --IRIFWYSLLSVLFGLTFTLKLMENNEKKAERAYERL---------EKEYPEVVHILKD 108
Query: 129 ELEHEKFFSEAKKRFHVENLRDFVLGMNDGLVEILGAVTGLSAVYPNLPRLVGISGLIVG 188
E +HE+ + + VLG+ND LVE+ GA+ GL+ + N ++VG+SGLI G
Sbjct: 109 EEKHEEELLNMLDEERLNYVSSMVLGLNDALVELTGALAGLTFAFQN-TKIVGLSGLITG 167
Query: 189 VAGALSMAIGALISVRSQRQVSES 212
+A A SMA +S R++ ES
Sbjct: 168 IAAAFSMAASEYLSQRAEEGSGES 191
>pir||F75375 nodulin 21-related protein - Deinococcus radiodurans (strain R1)
>gi|6459369|gb|AAF11164.1|AE002004_3 (AE002004) nodulin
21-related protein [Deinococcus radiodurans]
Length = 236
Score = 76.5 bits (185), Expect = 4e-13
Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 6/212 (2%)
Query: 148 LRDFVLGMNDGLVEILGAVTGLSAVYPNLPRLVGISGLIVGVAGALSMAIGALISVRSQR 207
LR VLG NDG+V + V G++A P + ++G+ VAGA SMA G +SV+SQ
Sbjct: 21 LRAAVLGANDGVVSVSSIVVGVAAASGVTPGTILLAGVAALVAGATSMAAGEYVSVQSQA 80
Query: 208 QVSESIRNRTKIIFQVSPERAVQEIYERLREGGLPEDIAREVSEKLSQRG----EAVIKL 263
+ + PE +QE+ + G+ +AR+V+E+L+ A +L
Sbjct: 81 DTEHANLALEARELREQPELELQELADIYVARGVDPVLARQVAEQLTAADALGTHAREEL 140
Query: 264 LVPEE-DENEFRAALYTGVAYLFGVMFPITPYFLASSSLTALPLSVTLAGLALAIVATSI 322
+ EE F+AAL + +A++ G + P+ L L ++ ++V LAL ++
Sbjct: 141 GITEELRARPFQAALASALAFVTGGIIPVIAAVLLPHHLVSVGVTVVTL-LALLVLGALA 199
Query: 323 SLISGISIRKKVAEMVVTGLGAAFLSYLFGHL 354
+ G ++ K + + G A LS L G L
Sbjct: 200 AYAGGANLWKGALRVTLWGAAAMALSALVGSL 231
>gb|AAK43343.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 247
Score = 71.4 bits (172), Expect = 1e-11
Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 13/228 (5%)
Query: 149 RDFVLGMNDGLVEILGAVTGLSAVYPNLPRLVGISGLIVGVAGALSMAIGALISVRSQRQ 208
R V G+ DGL+ + GA+ +A + + V ++GLI + A SM IG IS R + Q
Sbjct: 20 RTKVFGIQDGLIGV-GAIALGAAGFSHDAIAVLVAGLIATIGQAFSMGIGEYISTRVRMQ 78
Query: 209 VSESIRNRTKIIFQVSPERAVQEIYERLREGGLPEDIAREVSEKLSQRGEAVIKLLV--- 265
V ++ + K + PE QE+ + G ++++ ++++ L + + ++ ++
Sbjct: 79 VIQNEIRKEKYQLKKFPEMEKQELVNFYMKKGFTKEVSEKIADYLLKNEDVALEEMLMHE 138
Query: 266 ----PEEDENEFRAALYTGVAYLFGVMFPITPYFLAS-----SSLTALPLSVTLAGLALA 316
PEE E + +FG + P+ P+ +++ AL S+ L L L
Sbjct: 139 LKVFPEEFERPVKLGFLMSFYLIFGGLIPVFPFAISTYLKQFGFNFALITSILLVILTLG 198
Query: 317 IVATSISLISGISIRKKVAEMVVTGLGAAFLSYLFGHLMESIFHVSAL 364
I + +G+S + E + TGL A SYL G ++ +S L
Sbjct: 199 IFGILGTKYTGLSKPRGALEQIGTGLIALMGSYLAGVILAHFIPISYL 246
>pir||T34870 probable membrane protein - Streptomyces coelicolor
>gi|5738515|emb|CAB52862.1| (AL109849) putative membrane
protein [Streptomyces coelicolor A3(2)]
Length = 243
Score = 68.7 bits (165), Expect = 1e-10
Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 17/238 (7%)
Query: 130 LEHEKFFSEAKKRFHVEN------LRDFVLGMNDGLVEILGAVTGLSAVYPNLPRLVGIS 183
+E E EA + H LR V G DGLV L +TG++ + +V IS
Sbjct: 4 IETEAALHEAHRDNHTHRDVNGGWLRPAVFGAMDGLVSNLALMTGVAGGTASQQTVV-IS 62
Query: 184 GLIVGVAGALSMAIGALISVRSQRQVSESIRNRTKIIFQVSPERAVQEIYERLREGGLPE 243
GL AGA SMA G SV SQR++ E+ + + + P E+ G+
Sbjct: 63 GLAGLAAGAFSMAAGEYTSVASQRELVEAELDVERRELRKHPADEEAELAALYEARGVEP 122
Query: 244 DIAREVSEKLSQRGEAVIKLLVPEE---DENEFR----AALYTGVAYLFGVMFPITPYFL 296
++AREV+ +LS E +++ EE D ++ AA+ + ++ G + P+ P+ L
Sbjct: 123 ELAREVARQLSADPEQALEIHAREELGIDPSDLPSPTVAAVSSFGSFALGALLPVLPFLL 182
Query: 297 ASSSLTALPLSVTLAGLALAIVATSISLISGISIRKKVAEMVVTGLGAAFLSYLFGHL 354
+ +L L + LAGL L ++ ++ S + G AA ++YL G L
Sbjct: 183 GAGALWPAVL-LALAGLFLC--GAVVAKVTARSWWYSGLRQLALGGAAAGVTYLLGSL 237
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.138 0.373
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116036915
Number of Sequences: 2977
Number of extensions: 4570164
Number of successful extensions: 18179
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18157
Number of HSP's gapped (non-prelim): 12
length of query: 364
length of database: 189,106,746
effective HSP length: 60
effective length of query: 304
effective length of database: 153,197,526
effective search space: 46572047904
effective search space used: 46572047904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)