BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1274 (PAB1274) DE:Hypothetical protein
(997 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75012 hypothetical protein PAB1274 - Pyrococcus abyssi (st... 1987 0.0
pir||C71139 hypothetical protein PH0326 - Pyrococcus horikoshii ... 963 0.0
pir||E69791 conserved hypothetical protein yebA - Bacillus subti... 94 7e-18
dbj|BAB04325.1| (AP001509) unknown conserved protein [Bacillus h... 85 5e-15
pir||A75496 conserved hypothetical protein - Deinococcus radiodu... 83 1e-14
gi|11499976 A. fulgidus predicted coding region AF2400 [Archaeog... 80 2e-13
pir||T34966 probable membrane protein - Streptomyces coelicolor ... 75 5e-12
pir||F70464 hypothetical protein aq_1912 - Aquifex aeolicus >gi|... 72 4e-11
pir||F83287 hypothetical protein PA2873 [imported] - Pseudomonas... 71 6e-11
>pir||D75012 hypothetical protein PAB1274 - Pyrococcus abyssi (strain Orsay)
>gi|5459052|emb|CAB50538.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 997
Score = 1987 bits (5090), Expect = 0.0
Identities = 997/997 (100%), Positives = 997/997 (100%)
Query: 1 MMRKVIALALLVALGVSLALSPTEPILSFNVQRPRNEVDVSRNIYYSLLLNNTPVMKVTQ 60
MMRKVIALALLVALGVSLALSPTEPILSFNVQRPRNEVDVSRNIYYSLLLNNTPVMKVTQ
Sbjct: 1 MMRKVIALALLVALGVSLALSPTEPILSFNVQRPRNEVDVSRNIYYSLLLNNTPVMKVTQ 60
Query: 61 EKGVVEYLRQNVYVVYENGVWKSIDVKGSNEVIVERPRIPYRAMEDNVKVELLYPLLSGN 120
EKGVVEYLRQNVYVVYENGVWKSIDVKGSNEVIVERPRIPYRAMEDNVKVELLYPLLSGN
Sbjct: 61 EKGVVEYLRQNVYVVYENGVWKSIDVKGSNEVIVERPRIPYRAMEDNVKVELLYPLLSGN 120
Query: 121 LYTALHTSRVSVPSEYYPEFELFKPIKYPVKSYSFTVISYNFSQDELRRLKTRPLRMYLQ 180
LYTALHTSRVSVPSEYYPEFELFKPIKYPVKSYSFTVISYNFSQDELRRLKTRPLRMYLQ
Sbjct: 121 LYTALHTSRVSVPSEYYPEFELFKPIKYPVKSYSFTVISYNFSQDELRRLKTRPLRMYLQ 180
Query: 181 VPNLSKRVYELAFNITKNAKTPYEKAIAIRDYLISNYIYDVHQIPPIPGIDPVEWFLFYS 240
VPNLSKRVYELAFNITKNAKTPYEKAIAIRDYLISNYIYDVHQIPPIPGIDPVEWFLFYS
Sbjct: 181 VPNLSKRVYELAFNITKNAKTPYEKAIAIRDYLISNYIYDVHQIPPIPGIDPVEWFLFYS 240
Query: 241 KRGVCLDFNTAFVILARIVGIPARLVTGYRIKPISGEQVVKANQAHAWAEIYLDGAGWIT 300
KRGVCLDFNTAFVILARIVGIPARLVTGYRIKPISGEQVVKANQAHAWAEIYLDGAGWIT
Sbjct: 241 KRGVCLDFNTAFVILARIVGIPARLVTGYRIKPISGEQVVKANQAHAWAEIYLDGAGWIT 300
Query: 301 IDATGYERPPQRMEQKRENIDVKVEPLPNGTVKLSFSKRYTGDVKVLFNGQSVTLHVNGT 360
IDATGYERPPQRMEQKRENIDVKVEPLPNGTVKLSFSKRYTGDVKVLFNGQSVTLHVNGT
Sbjct: 301 IDATGYERPPQRMEQKRENIDVKVEPLPNGTVKLSFSKRYTGDVKVLFNGQSVTLHVNGT 360
Query: 361 SALVPINVTNPGWMRIELKNKLVEVLIKNLPKIVVTPSNLTIAKGETGKFKVITSGDIRI 420
SALVPINVTNPGWMRIELKNKLVEVLIKNLPKIVVTPSNLTIAKGETGKFKVITSGDIRI
Sbjct: 361 SALVPINVTNPGWMRIELKNKLVEVLIKNLPKIVVTPSNLTIAKGETGKFKVITSGDIRI 420
Query: 421 NSPLPFRVEKAPYGYDVYVEGTRVGKYTVKVTSGNVSKDVEITVKVKTRVEIRNYPPSIK 480
NSPLPFRVEKAPYGYDVYVEGTRVGKYTVKVTSGNVSKDVEITVKVKTRVEIRNYPPSIK
Sbjct: 421 NSPLPFRVEKAPYGYDVYVEGTRVGKYTVKVTSGNVSKDVEITVKVKTRVEIRNYPPSIK 480
Query: 481 VGEDFYVEGIVVGEYEYGKPSGKVTIEARVEKDKKGIVIGEGQVKDGRFRVKCRIDKLGE 540
VGEDFYVEGIVVGEYEYGKPSGKVTIEARVEKDKKGIVIGEGQVKDGRFRVKCRIDKLGE
Sbjct: 481 VGEDFYVEGIVVGEYEYGKPSGKVTIEARVEKDKKGIVIGEGQVKDGRFRVKCRIDKLGE 540
Query: 541 YELVAIYHGNSIFLPSTSDPRIRVISGSKLTVEKFQVAPVGNINVRGVLTLENGDPVKGE 600
YELVAIYHGNSIFLPSTSDPRIRVISGSKLTVEKFQVAPVGNINVRGVLTLENGDPVKGE
Sbjct: 541 YELVAIYHGNSIFLPSTSDPRIRVISGSKLTVEKFQVAPVGNINVRGVLTLENGDPVKGE 600
Query: 601 KILVYLDGRLISVLMTNEGGIFSGYIKVTGPGVHSISVVYPGNEFLKGSKVEWSFVAIKV 660
KILVYLDGRLISVLMTNEGGIFSGYIKVTGPGVHSISVVYPGNEFLKGSKVEWSFVAIKV
Sbjct: 601 KILVYLDGRLISVLMTNEGGIFSGYIKVTGPGVHSISVVYPGNEFLKGSKVEWSFVAIKV 660
Query: 661 ELDYSKTITAGEDLKVSGRVYGISDGVITVKGWFGEKRVDMSNSKVEFYLPIPEDLSGIV 720
ELDYSKTITAGEDLKVSGRVYGISDGVITVKGWFGEKRVDMSNSKVEFYLPIPEDLSGIV
Sbjct: 661 ELDYSKTITAGEDLKVSGRVYGISDGVITVKGWFGEKRVDMSNSKVEFYLPIPEDLSGIV 720
Query: 721 RFDVLYNGTKVGEFYLFVKPKVEIQVKGTIMIVNKTSSLEVRVLRGGDPVSNAKVFLTTP 780
RFDVLYNGTKVGEFYLFVKPKVEIQVKGTIMIVNKTSSLEVRVLRGGDPVSNAKVFLTTP
Sbjct: 721 RFDVLYNGTKVGEFYLFVKPKVEIQVKGTIMIVNKTSSLEVRVLRGGDPVSNAKVFLTTP 780
Query: 781 QGETLSNLTDDNGIAIFTLRPEAPGRFRYHILVILGDFFLEDNIDILVLSHELYYYVVLA 840
QGETLSNLTDDNGIAIFTLRPEAPGRFRYHILVILGDFFLEDNIDILVLSHELYYYVVLA
Sbjct: 781 QGETLSNLTDDNGIAIFTLRPEAPGRFRYHILVILGDFFLEDNIDILVLSHELYYYVVLA 840
Query: 841 SLGFLSLFAGAILLKLFMSVKISFDRAPPVYTPQESIIVTLNRRGKLLVDGKPIGSGKKF 900
SLGFLSLFAGAILLKLFMSVKISFDRAPPVYTPQESIIVTLNRRGKLLVDGKPIGSGKKF
Sbjct: 841 SLGFLSLFAGAILLKLFMSVKISFDRAPPVYTPQESIIVTLNRRGKLLVDGKPIGSGKKF 900
Query: 901 RLKLSPGEHLFVAKKFIFKDKAKVLVVNTPEEAVVKMFVEKFNGEKNKTAREILGYNVIT 960
RLKLSPGEHLFVAKKFIFKDKAKVLVVNTPEEAVVKMFVEKFNGEKNKTAREILGYNVIT
Sbjct: 901 RLKLSPGEHLFVAKKFIFKDKAKVLVVNTPEEAVVKMFVEKFNGEKNKTAREILGYNVIT 960
Query: 961 WVFEKARYGISGISIEEFKLFLGKLREVVGSEIRAKK 997
WVFEKARYGISGISIEEFKLFLGKLREVVGSEIRAKK
Sbjct: 961 WVFEKARYGISGISIEEFKLFLGKLREVVGSEIRAKK 997
>pir||C71139 hypothetical protein PH0326 - Pyrococcus horikoshii
>gi|3256717|dbj|BAA29400.1| (AP000002) 1003aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 1003
Score = 963 bits (2463), Expect = 0.0
Identities = 477/989 (48%), Positives = 667/989 (67%), Gaps = 8/989 (0%)
Query: 1 MMRKVIALALLVALGVSLALSPTEPILSFNVQRPR----NEVDVSRNIYYSLLLNNTPVM 56
M RK+I++ +L +G+SL S +PILSF R NE+DVS NIY +LLLNNTP+M
Sbjct: 1 MKRKIISIIILAIVGLSLTFSSYQPILSFKGLESRAKSINELDVSENIYSALLLNNTPIM 60
Query: 57 KVTQEKGVVEYLRQNVYVVYENGVWKSIDVKGSNEVIVERPRIPYRAMEDNVKVELLYPL 116
KV Q GVVEYLRQNVYV YE G WK + S +++E+P +P+R + D+V +EL YPL
Sbjct: 61 KVRQRVGVVEYLRQNVYVTYEGGRWKGKESNVSRRILIEKPSVPHREVRDHVTIELEYPL 120
Query: 117 LSGNLYTALHTSRVSVPSEYYPEFELFKPIKYPVKSYSFTVISYNFSQDELRRLKT-RPL 175
+SGNLYT L+T+ +S+P YY EF LF+P+ YPV+SYSF V+ Y+F QD L++L T L
Sbjct: 121 ISGNLYTTLYTTSISIPYYYYLEFSLFRPVNYPVRSYSFDVVKYDFPQDVLKKLPTDENL 180
Query: 176 RMYLQVPNLSKRVYELAFNITKNAKTPYEKAIAIRDYLISNYIYDVHQIPPIPGIDPVEW 235
R YLQVP LS RVYELAFNIT+NAKTPYEKA+AIR+YL+ NYIYD + IPPIPGIDPVEW
Sbjct: 181 RDYLQVPKLSNRVYELAFNITRNAKTPYEKALAIRNYLLENYIYDENPIPPIPGIDPVEW 240
Query: 236 FLFYSKRGVCLDFNTAFVILARIVGIPARLVTGYRIKPISGEQVVKANQAHAWAEIYLDG 295
FLFY+KRGVCLDFNTAFVILARI GIPARLVTGY+I PI GEQ+V+A QAHAWAEIYL G
Sbjct: 241 FLFYTKRGVCLDFNTAFVILARIAGIPARLVTGYKIDPIPGEQIVRAKQAHAWAEIYLKG 300
Query: 296 AGWITIDATGYERPPQRMEQKRENIDVKVEPLPNGTVKLSFSKRYTGDVKVLFNGQSVTL 355
GWI IDATGY R + +K E ++ + LPNGT+ ++FS+ +++ +++ +
Sbjct: 301 VGWIPIDATGYRRSEKPKTKKEEPLEANLTILPNGTLSITFSRALNDTIEITTYSKNMRI 360
Query: 356 HVNGTSALVPINVTNPGWMRIELKNKLVEVLIKNLPKIVVTPSNLTIAKGETGKFKVITS 415
VNGT LVP+N+++P + + + N + E +I +P +V+ P NLTI KG G KVIT
Sbjct: 361 KVNGTQVLVPLNISSPEKITVRVGNNIFEKIINWVPSVVIVPKNLTITKGGYGSIKVITQ 420
Query: 416 GDIRINSPLPFRVEKAPYGYDVYVEGTRVGKYTVKVTSGNVSKDVEITVKVKTRVEIRNY 475
+ + S LP+ + K +GY+V V G VG Y V++ G+ V + V +KT V I +
Sbjct: 421 EKVSVRSELPYILMKRDFGYEVKVYGEDVGDYPVEIAVGSTIYTVHVKVGIKTYVRILKW 480
Query: 476 PPSIKVGEDFYVEGIVVGEYEYGKPSGKVTIEARVEKDKKGIVIGEGQVKDGRFRVKCRI 535
P ++ GE F +EG+V E GKV +EAR +K K GI IGEG+V++G+F V+C +
Sbjct: 481 PSRVEEGEKFLIEGVVTSENGEKVDGGKVIVEARTDKRKPGIKIGEGKVRNGKFTVRCVL 540
Query: 536 DKLGEYELVAIYHGNSIFLPSTSDPRIRVISGSKLTVEKFQVAPVGNINVRGVLTLENGD 595
+K GEYELVA+Y G S FLPS SDP+I+VI+ SK+ KF V VG + +RG+L +G
Sbjct: 541 NKTGEYELVAVYAGYSFFLPSVSDPKIKVIARSKILANKFNVTSVGLVKIRGILVTNSGK 600
Query: 596 PVKGEKILVYLDGRLISVLMTNEGGIFSGYIKVTGPGVHSISVVYPGNEFLKGSKVEWSF 655
+ K+ VYLDG + VL+T G+F GYIKV PG H + V+YPG+E + S V W F
Sbjct: 601 ALGNRKVYVYLDGNIARVLLTEANGMFQGYIKVLTPGFHEMKVIYPGDELSEPSNVTWRF 660
Query: 656 VAIKVELDYSKTITAGEDLKVSGRVYGISDGVITVKGWFGEKRVDMSNSKVEFYLPIPED 715
+A+K++LDY ++ GED+K+ G+VYGI+ G + V+ G++ V++ N + P D
Sbjct: 661 LALKLKLDYPVSVKGGEDIKIFGKVYGITSGTLVVESKLGKRIVEIRNGEFRISFPTRRD 720
Query: 716 LSGIVRFDVLYNGTKVGEFYLFVKPKVEIQVKGTIMIVNKTSSLEVRVLRG-GDPVSNAK 774
G+ RF YNGT++ +FVKP++ I+V GTI++ NK+ ++ V+VL +P+ AK
Sbjct: 721 SEGLYRFSFFYNGTEIKRIAVFVKPRIIIRVSGTILVSNKSKTIRVKVLSPVEEPIPGAK 780
Query: 775 VFLTTPQGETLSNLTDDNGIAIFTLRPEAPGRFRYHILVILGDFFLEDNIDILVLSHELY 834
V + SN+T++ G+A FT+ + PG++ ++L+I+ + F+ I VL LY
Sbjct: 781 VIFQV-GNVSKSNVTNERGVAEFTISFKKPGKYPANLLIIMQNGFVSYPFYIRVLRFPLY 839
Query: 835 YYVVLASLGFLSLFAGAILLKLFMSVKISFDRAPPVYTPQESIIVTLNRRGKLLVDGKPI 894
Y +L L + G LKL M+V I+ DR PPVYT Q+ I + L++ L ++GK +
Sbjct: 840 IYALLVLTILLGTYFGIKGLKLLMAVDINLDRDPPVYTSQDEIRIILSKPASLFINGKFV 899
Query: 895 GSGKKFRLKLSPGEHLFVAKKFIFK-DKAKVLVVNTPEEAVVKMFVEKFNGEKNKTAREI 953
G G++FR+KLSPG + K+ K + K+LVV++ +AVVK+F+EK++G KT REI
Sbjct: 900 GKGREFRVKLSPGVYRVQTMKWGIKGSEKKILVVDSLNDAVVKIFLEKYDGAPGKTVREI 959
Query: 954 LGYNVITWVFEKARYGISGISIEEFKLFL 982
LG +V+T +FEKARYG +S +FK F+
Sbjct: 960 LGKSVLTEIFEKARYGNVSLSFNDFKTFI 988
>pir||E69791 conserved hypothetical protein yebA - Bacillus subtilis
>gi|1708643|gb|AAB62310.1| (U51115) YebA [Bacillus
subtilis] >gi|2632948|emb|CAB12454.1| (Z99107) similar
to hypothetical proteins [Bacillus subtilis]
Length = 655
Score = 94.0 bits (230), Expect = 7e-18
Identities = 65/182 (35%), Positives = 94/182 (50%), Gaps = 26/182 (14%)
Query: 152 SYSFTVISYNFSQDELRRLKTRPLR-------MYLQVPN-LSKRVYELAFNITKNAKTPY 203
+Y+ T S + DELR++K R Y+Q+P+ L +RV LA +T++ +
Sbjct: 322 NYTVTYNSPVYKLDELRKVKVRKNSEEYTFSDRYMQLPDSLPERVRTLAIKLTQDHDNMF 381
Query: 204 EKAIAIRDYLISN-YIYDVHQIP-PIPGIDPVEWFLFYSKRGVCLDFNTAFVILARIVGI 261
+K A+ DYL SN + Y+ + P D V+ FLF +K G C +F++A V+L R GI
Sbjct: 382 DKVKAVEDYLGSNAFTYETENVTIPKNDEDYVDQFLFETKMGYCDNFSSAMVVLLRSAGI 441
Query: 262 PARLVTGYRIKPISGE-----------QVVKANQAHAWAEIYLDGAGWITIDAT-GYERP 309
PAR V GY SGE V N AH+W E+Y GW+T + T G+ P
Sbjct: 442 PARWVKGY----TSGEYKEAGNKNGSIYEVTNNNAHSWVEVYFPEQGWVTFEPTKGFTNP 497
Query: 310 PQ 311
Q
Sbjct: 498 AQ 499
>dbj|BAB04325.1| (AP001509) unknown conserved protein [Bacillus halodurans]
Length = 729
Score = 84.7 bits (206), Expect = 5e-15
Identities = 50/136 (36%), Positives = 78/136 (56%), Gaps = 9/136 (6%)
Query: 178 YLQVPN-LSKRVYELAFNITKNAKTPYEKAIAIRDYLI-SNYIYDVHQIP-PIPGIDPVE 234
YLQ+P+ + +RVYELA I + Y++A AI +Y S + Y+ +P P G D V+
Sbjct: 407 YLQLPDSVPQRVYELAEGIVSEYENRYDQAKAIENYFQRSGFRYETTDVPIPEDGQDYVD 466
Query: 235 WFLFYSKRGVCLDFNTAFVILARIVGIPARLVTGYRIKPI---SGEQ---VVKANQAHAW 288
FLF ++ G C +F+T+ V+L R VGIPAR G+ + + EQ ++ + AH+W
Sbjct: 467 QFLFETQAGYCDNFSTSMVVLLRSVGIPARWAKGFTAGTLVDSTNEQNVYEIRNSNAHSW 526
Query: 289 AEIYLDGAGWITIDAT 304
E+Y GW+ + T
Sbjct: 527 VEVYFPEVGWVPFEPT 542
>pir||A75496 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458320|gb|AAF10199.1|AE001920_2 (AE001920)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 987
Score = 83.1 bits (202), Expect = 1e-14
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 16/158 (10%)
Query: 225 PPIPGIDPVEWFLFYSKRGVCLDFNTAFVILARIVGIPARLVTGYR---IKPISGEQVVK 281
P +P + ++ FLF SKRG C +++AF L R G+PAR+V GY+ + P G +V+
Sbjct: 727 PKLPADNRIDAFLFGSKRGFCEHYSSAFAFLMRAAGVPARIVGGYQGGEVNPDGGYLIVR 786
Query: 282 ANQAHAWAEIYLDGAGWITIDATGYERPPQ-------RMEQKRENIDVKVEPLPNGTVKL 334
AHAWAE++L G GW+ +D T P + + Q R + L T++L
Sbjct: 787 QQNAHAWAEVWLAGQGWVRVDPTAAVAPARVQADLGTALTQPRATAPRERTALERATLRL 846
Query: 335 SFSKRYTGDVKVLFNGQSVTLHVNGTSALVPINVTNPG 372
+ V ++G+ S L + ++ PG
Sbjct: 847 DALQNQWNTWVVSYDGE------QQRSLLTRLGISGPG 878
>gi|11499976 A. fulgidus predicted coding region AF2400 [Archaeoglobus fulgidus]
>gi|7483826|pir||A69550 hypothetical protein AF2400 -
Archaeoglobus fulgidus >gi|2650697|gb|AAB91268.1|
(AE001110) A. fulgidus predicted coding region AF2400
[Archaeoglobus fulgidus]
Length = 836
Score = 79.6 bits (193), Expect = 2e-13
Identities = 47/112 (41%), Positives = 62/112 (54%), Gaps = 7/112 (6%)
Query: 191 LAFNITKNAKTPYEKAIAIRDYLISNYIYDVHQIPPIPGIDPVEWFLFYSKRGVCLDFNT 250
LA IT NA + EK AI YL +NYI + V+ FLF +KRG +F T
Sbjct: 208 LAEKITANATSDLEKVKAIESYLKNNYINTYVERTD------VKEFLFKTKRGTAREFAT 261
Query: 251 AFVILARIVGIPARLVTGYRIKPISGEQVVKANQAHAWAEIYLDGAGWITID 302
AFV+LA+ +GIPAR V GY P+ Q + A+ A+ WAE+ GW+ D
Sbjct: 262 AFVLLAQSIGIPARAVFGYLADPVETNQTIFASDAYVWAEVRFK-EGWMEFD 312
>pir||T34966 probable membrane protein - Streptomyces coelicolor
>gi|5689968|emb|CAB52005.1| (AL109663) putative membrane
protein [Streptomyces coelicolor A3(2)]
Length = 797
Score = 74.5 bits (180), Expect = 5e-12
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 176 RMYLQVPN-LSKRVYELAFNITKNAKTPYEKAIAIRDYLISN--YIYDVHQIPPIPGIDP 232
R Y ++P+ L V+ A +T A PYE+A+ +++Y N + YD Q+ G +
Sbjct: 419 REYTELPDSLPDVVFRTAREVTAGAANPYEQAVKLQEYFAVNGGFEYDT-QVKVGSGSEA 477
Query: 233 VEWFLFYSKRGVCLDFNTAFVILARIVGIPARLVTGYR--IKPISGEQVVKANQAHAWAE 290
+ FL K G C+ F+ A +AR +GIPAR+ G+ G V AHAW E
Sbjct: 478 IARFL-KDKEGFCVHFSFAMAAMARSLGIPARVAVGFAPGSPQADGSVSVGLRDAHAWPE 536
Query: 291 IYLDGAGWITIDAT 304
+Y +G GW + T
Sbjct: 537 VYFEGVGWTRFEPT 550
>pir||F70464 hypothetical protein aq_1912 - Aquifex aeolicus
>gi|2984185|gb|AAC07717.1| (AE000763) putative protein
[Aquifex aeolicus]
Length = 485
Score = 71.8 bits (173), Expect = 4e-11
Identities = 49/150 (32%), Positives = 80/150 (52%), Gaps = 10/150 (6%)
Query: 173 RPLRMYLQVP-NLSKRVYELAFNITKNAKTPYEKAIAIRDYLISNYIYDVHQIPPIPGID 231
+PL +Y +P ++ + V +LA + + AK+ EK ++++ +N ++ G +
Sbjct: 202 KPLPIYTHLPPDIPESVRDLAKRLQRGAKSNEEKIERVKEFFKNNGFKYTLKLEHAGG-N 260
Query: 232 PVEWFLFYSKRGVCLDFNTAFVILARIVGIPARLVTGY--RIKPISGEQVVKAN-QAHAW 288
P+E FLF +KRG C F +A +L R++ +P RLV+G+ +K G + N AH W
Sbjct: 261 PLEEFLFKTKRGNCEYFASATAVLLRLMDVPTRLVSGFYGAMKNEYGNYYIVINAMAHVW 320
Query: 289 AEIYLDGAGWITIDATGYERPPQRMEQKRE 318
E Y DG W+ +D T PP E RE
Sbjct: 321 VEAY-DGKKWVRVDTT----PPYVPEGVRE 345
>pir||F83287 hypothetical protein PA2873 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948962|gb|AAG06261.1|AE004713_10
(AE004713) hypothetical protein [Pseudomonas aeruginosa]
Length = 668
Score = 71.0 bits (171), Expect = 6e-11
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 225 PPIPGIDPVEWFLFYSKRGVCLDFNTAFVILARIVGIPARLVTGYR---IKPISGEQVVK 281
PP G D V+ FLF ++ G C + A + R GIPAR+V GY+ + P +V
Sbjct: 384 PPATGADGVDDFLFDTRSGFCAHYAGAMAFVLRAAGIPARVVAGYQGGELNPAGNYLLVH 443
Query: 282 ANQAHAWAEIYLDGAGWITIDATGYERPPQRMEQKRE 318
AHAW E + GW+++D T Y+ P+R+EQ E
Sbjct: 444 QFDAHAWVEYWQPEQGWLSVDPT-YQVAPERIEQGLE 479
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379586039
Number of Sequences: 2977
Number of extensions: 17384496
Number of successful extensions: 37162
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 37137
Number of HSP's gapped (non-prelim): 15
length of query: 997
length of database: 189,106,746
effective HSP length: 59
effective length of query: 938
effective length of database: 153,796,013
effective search space: 144260660194
effective search space used: 144260660194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 170 (70.6 bits)