BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1275 (PAB1275) DE:Hypothetical protein
         (317 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75012 hypothetical protein PAB1275 - Pyrococcus abyssi (st...   610  e-174
pir||E71139 hypothetical protein PH0328 - Pyrococcus horikoshii ...   234  1e-60

>pir||C75012 hypothetical protein PAB1275 - Pyrococcus abyssi (strain Orsay)
           >gi|5459051|emb|CAB50537.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 317
           
 Score =  610 bits (1556), Expect = e-174
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MKSELKSKAVILVIYGLILFTLTRIRVPFGLENSIKSLVILIIIGELSSIIRRELNYVFI 60
           MKSELKSKAVILVIYGLILFTLTRIRVPFGLENSIKSLVILIIIGELSSIIRRELNYVFI
Sbjct: 1   MKSELKSKAVILVIYGLILFTLTRIRVPFGLENSIKSLVILIIIGELSSIIRRELNYVFI 60

Query: 61  SLGIFFFFFYLPFDVPKVYMGLFGMGISLIFFSAKFKESFMVLSRGVGLSVSMYSLSTLL 120
           SLGIFFFFFYLPFDVPKVYMGLFGMGISLIFFSAKFKESFMVLSRGVGLSVSMYSLSTLL
Sbjct: 61  SLGIFFFFFYLPFDVPKVYMGLFGMGISLIFFSAKFKESFMVLSRGVGLSVSMYSLSTLL 120

Query: 121 PILSPLFRFVAIFSAIGYGLAFLESIGVFPGDNVRRNLLGIIIVGALIGIVRISEVELFP 180
           PILSPLFRFVAIFSAIGYGLAFLESIGVFPGDNVRRNLLGIIIVGALIGIVRISEVELFP
Sbjct: 121 PILSPLFRFVAIFSAIGYGLAFLESIGVFPGDNVRRNLLGIIIVGALIGIVRISEVELFP 180

Query: 181 QILWFGVKAISLLLALAIAGIILNSIPSKRKDIVVEVHVDPDELKIKNEMYKEAEKVVKD 240
           QILWFGVKAISLLLALAIAGIILNSIPSKRKDIVVEVHVDPDELKIKNEMYKEAEKVVKD
Sbjct: 181 QILWFGVKAISLLLALAIAGIILNSIPSKRKDIVVEVHVDPDELKIKNEMYKEAEKVVKD 240

Query: 241 FIIKGEKSGLVSYVTYYAIKAGMKREDVAKIISPIVDYEPRKPSALTPKWFAEILERREI 300
           FIIKGEKSGLVSYVTYYAIKAGMKREDVAKIISPIVDYEPRKPSALTPKWFAEILERREI
Sbjct: 241 FIIKGEKSGLVSYVTYYAIKAGMKREDVAKIISPIVDYEPRKPSALTPKWFAEILERREI 300

Query: 301 EKRKMLVKKALGGILNE 317
           EKRKMLVKKALGGILNE
Sbjct: 301 EKRKMLVKKALGGILNE 317


>pir||E71139 hypothetical protein PH0328 - Pyrococcus horikoshii
           >gi|3256719|dbj|BAA29402.1| (AP000002) 320aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 320
           
 Score =  234 bits (590), Expect = 1e-60
 Identities = 120/316 (37%), Positives = 204/316 (63%), Gaps = 10/316 (3%)

Query: 1   MKSELKSKAVILVIY--GLILFTLTRIRVPF--GLENSIKSLVILIIIGELSSIIRRELN 56
           M+++L++K + +  Y   ++L     + VP+   + +SI +L++ +  GE+ S+I+ E  
Sbjct: 1   MQAKLRNKIISVAFYLISIVLVKYILVNVPWLDVISDSIIALLVFLAFGEIISLIKMEFK 60

Query: 57  YVFISLGIFFFFFYLPFDVPKVYMGLFGMGISLIFFSAKFKESFMVLSRGVGLSVSMYSL 116
           Y+ ISL +FFF +Y P+D  ++ +G+ G G++L   S KF E  + + +GVG+ +   +L
Sbjct: 61  YLAISLAVFFFLYYFPYDFSRIDVGIIGAGLTLFLSSYKFGEPLIQVVQGVGIIMVFLAL 120

Query: 117 STLLPILSPLFRFVAIFSAIGYGLAFLESIGVFPGDNVRRNLLGIIIVGALIGIVRISEV 176
           S L+  LSP+F+++AIFS +GYG A LE   +  G     NL G+II+G L+GI++++  
Sbjct: 121 SNLVYPLSPIFKYLAIFSGLGYGFASLEGFRILHGRYFTENLKGMIIIGGLLGIIKVNP- 179

Query: 177 ELFPQILWFGVKAISLLLALAIAGIILNSIPSKRKDIVVEVHVDPDELKIK---NEMYKE 233
             F   L F + +ISLLL L I G+I+ SIPSK+    V V     E+++    +E+Y+E
Sbjct: 180 --FKGYLGFAINSISLLLILGITGLIVTSIPSKKAKEEVIVGRLKHEVRLNVSVDEIYRE 237

Query: 234 AEKVVKDFIIKGEKSGLVSYVTYYAIKAGMKREDVAKIISPIVDYEPRKPSALTPKWFAE 293
           A+  + DFI+ G+K  +V+++TYY IK+G+    + +II+PIV+YE RK S L+P WF  
Sbjct: 238 AKLALDDFILHGKKEKIVAFLTYYGIKSGLSLNKIEEIIAPIVNYEGRKYSVLSPSWFIR 297

Query: 294 ILERREIEKRKMLVKK 309
           ++E++EIE+RK +V++
Sbjct: 298 LMEKKEIERRKKIVEE 313


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.147    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103822623
Number of Sequences: 2977
Number of extensions: 4301101
Number of successful extensions: 15432
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15428
Number of HSP's gapped (non-prelim): 2
length of query: 317
length of database: 189,106,746
effective HSP length: 54
effective length of query: 263
effective length of database: 156,788,448
effective search space: 41235361824
effective search space used: 41235361824
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)