BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1276 (moxR-1) DE:methanol dehydrogenase regulatory protein
(moxR-1)
(317 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75012 methanol dehydrogenase regulatory protein (moxr-1) P... 629 e-179
pir||F71139 hypothetical protein PH0329 - Pyrococcus horikoshii ... 520 e-147
gi|11500001 methanol dehydrogenase regulatory protein (moxR) [Ar... 391 e-108
pir||C75037 methanol dehydrogenase regulatory protein (moxr-3) P... 354 6e-97
pir||B71126 hypothetical protein PH0776 - Pyrococcus horikoshii ... 351 5e-96
pir||B70947 probable moxR3 protein - Mycobacterium tuberculosis ... 304 1e-81
dbj|BAB04323.1| (AP001509) methanol dehydrogenase regulatory pro... 303 2e-81
pir||H72289 hypothetical protein TM1132 - Thermotoga maritima (s... 297 1e-79
pir||G71146 hypothetical protein PH0385 - Pyrococcus horikoshii ... 293 1e-78
pir||D75008 methanol dehydrogenase regulatory protein (moxr-2) P... 293 1e-78
pir||C69791 methanol dehydrogenase regulation homolog yeaC - Bac... 290 2e-77
dbj|BAB04450.1| (AP001509) unknown conserved protein [Bacillus h... 288 5e-77
gb|AAG18829.1| (AE004987) methanol dehydrogenase regulatory prot... 288 5e-77
pir||D75460 MoxR-related protein - Deinococcus radiodurans (stra... 286 2e-76
pir||T35917 probable regulatory protein - Streptomyces coelicolo... 285 4e-76
pir||T34964 probable regulatory protein - Streptomyces coelicolo... 277 9e-74
pir||S75782 methanol dehydrogenase regulatory protein - Synechoc... 277 1e-73
emb|CAC12049.1| (AL445065) regulatory protein moxR related prote... 274 8e-73
pir||C83106 conserved hypothetical protein PA4322 [imported] - P... 261 6e-69
pir||H70321 conserved hypothetical protein aq_240 - Aquifex aeol... 257 2e-67
emb|CAB90929.1| (AL355774) putative regulatory protein [Streptom... 256 3e-67
pir||E70792 probable regulatory protein - Mycobacterium tubercul... 256 3e-67
pir||G82635 methanol dehydrogenase regulatory protein XF1813 [im... 254 8e-67
pir||F72606 probable methanol dehydrogenase regulator APE1317 - ... 253 2e-66
pir||D72767 hypothetical protein APE0127 - Aeropyrum pernix (str... 252 4e-66
pir||H70121 methanol dehydrogenase regulator (moxR) homolog - Ly... 250 1e-65
pir||H83287 conserved hypothetical protein PA2875 [imported] - P... 250 1e-65
emb|CAB98184.1| (AJ276161) putative regulatory protein [Streptom... 249 3e-65
pir||S74593 MorR protein - Synechocystis sp. (strain PCC 6803) >... 247 1e-64
pir||B75496 moxR protein - Deinococcus radiodurans (strain R1) >... 243 3e-63
pir||B70874 probable moxR protein - Mycobacterium tuberculosis (... 241 1e-62
emb|CAA65298.1| (X96434) moxR [Borrelia burgdorferi] >gi|2689172... 240 1e-62
pir||H82493 MoxR-related protein VCA0175 [imported] - Vibrio cho... 235 6e-61
pir||G83261 conserved hypothetical protein PA3070 [imported] - P... 228 9e-59
pir||S43189 hypothetical protein - Pseudomonas aeruginosa >gi|46... 199 3e-50
gb|AAC46196.1| (AF002133) transcriptional regulator [Mycobacteri... 187 1e-46
gb|AAB91544.1| (AF017119) MoxR homolog [Allochromatium vinosum] 180 2e-44
gb|AAB62561.1| (AF006054) MoxR [Mycobacterium tuberculosis] 174 1e-42
dbj|BAA23276.1| (AB004097) ORF4 [Hyphomicrobium methylovorum] 148 8e-35
sp|P30621|MOXR_METEX MOXR PROTEIN (MXAR PROTEIN) >gi|1771259|emb... 139 5e-32
sp|P29901|MOXR_PARDE MOXR PROTEIN >gi|94691|pir||D41377 methanol... 127 2e-28
>pir||B75012 methanol dehydrogenase regulatory protein (moxr-1) PAB1276 -
Pyrococcus abyssi (strain Orsay)
>gi|5459050|emb|CAB50536.1| (AJ248288) methanol
dehydrogenase regulatory protein (moxR-1) [Pyrococcus
abyssi]
Length = 317
Score = 629 bits (1604), Expect = e-179
Identities = 317/317 (100%), Positives = 317/317 (100%)
Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN
Sbjct: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM
Sbjct: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME
Sbjct: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240
ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV
Sbjct: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240
Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300
EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE
Sbjct: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300
Query: 301 IVEEAVNEVPVPKDLEY 317
IVEEAVNEVPVPKDLEY
Sbjct: 301 IVEEAVNEVPVPKDLEY 317
>pir||F71139 hypothetical protein PH0329 - Pyrococcus horikoshii
>gi|3256720|dbj|BAA29403.1| (AP000002) 317aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 317
Score = 520 bits (1325), Expect = e-147
Identities = 242/317 (76%), Positives = 287/317 (90%)
Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
M ++++I +IG++FIG +V+RKV A ALVNGN+LFED+PGLGKTLLAKAFAK+LGL
Sbjct: 1 MRGEVKKIIEAIGDIFIGHEDVIRKVLAVALVNGNILFEDYPGLGKTLLAKAFAKILGLK 60
Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
++RIQFTPDLLPADIIGTKVW+PEKG FE++KGPIFTN+LLADEINRAPPKTQSALLEAM
Sbjct: 61 FKRIQFTPDLLPADIIGTKVWKPEKGAFEVVKGPIFTNILLADEINRAPPKTQSALLEAM 120
Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
EERQVTIEGETF+LE+PFF+IATQNPLE EGTYPLPEAQLDRFLVRL++GYP +E++E+E
Sbjct: 121 EERQVTIEGETFKLERPFFIIATQNPLELEGTYPLPEAQLDRFLVRLNIGYPRNEEDELE 180
Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240
ILKARLRWGKDDPT D+ P++S+E+F+ MQ VE V +HDDILRYIVR+VRRIREDER+
Sbjct: 181 ILKARLRWGKDDPTSDISPIISREDFIRMQEEVERGVIIHDDILRYIVRLVRRIREDERI 240
Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300
EAGPSPRG LALMKL+KANAFIEGR +VIPDDVK F ++AL+HRIVLKPEYSLERG+ E
Sbjct: 241 EAGPSPRGGLALMKLAKANAFIEGRSYVIPDDVKYFAVEALAHRIVLKPEYSLERGIAEE 300
Query: 301 IVEEAVNEVPVPKDLEY 317
I+ E + EVPVPKD+ Y
Sbjct: 301 IIREVLEEVPVPKDIRY 317
>gi|11500001 methanol dehydrogenase regulatory protein (moxR) [Archaeoglobus
fulgidus] >gi|7428883|pir||B69553 methanol dehydrogenase
regulatory protein (moxR) homolog - Archaeoglobus
fulgidus >gi|2650675|gb|AAB91247.1| (AE001108) methanol
dehydrogenase regulatory protein (moxR) [Archaeoglobus
fulgidus]
Length = 324
Score = 391 bits (994), Expect = e-108
Identities = 190/306 (62%), Positives = 244/306 (79%), Gaps = 3/306 (0%)
Query: 8 VINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFT 67
++ ++ +V++G +V K+ AAAL NGN+LFED+PGLGKTLLAK FA+V+G +YRR+QFT
Sbjct: 16 IVKAVCDVYVGDKNLVEKMLAAALTNGNILFEDYPGLGKTLLAKVFARVIGADYRRVQFT 75
Query: 68 PDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTI 127
PDLLP+DIIG K+WR ++ FE +KGPIFTNVLLADEINR+PPKTQ+ALLEAMEE+Q+T+
Sbjct: 76 PDLLPSDIIGVKIWRGDR--FEFVKGPIFTNVLLADEINRSPPKTQAALLEAMEEKQITV 133
Query: 128 EGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLR 187
EGETF L PFFV+ATQNP+E EGTYPLPEAQ+DRF++R+ GYP S +EEMEIL+ R+
Sbjct: 134 EGETFSLSMPFFVLATQNPIEQEGTYPLPEAQMDRFMLRMRPGYPESIEEEMEILRRRIS 193
Query: 188 WGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPR 247
W KDDPT D++PV+S E F +Q VE V V IL+YI +VR RE E VE G SPR
Sbjct: 194 WRKDDPTEDVEPVVSLETFRRIQDAVE-AVYVDKSILKYISELVRATREHELVELGSSPR 252
Query: 248 GALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVN 307
G LAL+KL++A A ++GRDFVIPDDVK ++AL+HR++LK EY++E E+VEE +N
Sbjct: 253 GGLALLKLARALAVMDGRDFVIPDDVKRVAVEALAHRVILKFEYAVEGLRAEEVVEEILN 312
Query: 308 EVPVPK 313
V VPK
Sbjct: 313 SVRVPK 318
>pir||C75037 methanol dehydrogenase regulatory protein (moxr-3) PAB0848 -
Pyrococcus abyssi (strain Orsay)
>gi|5458705|emb|CAB50192.1| (AJ248287) methanol
dehydrogenase regulatory protein (moxR-3) [Pyrococcus
abyssi]
Length = 314
Score = 354 bits (900), Expect = 6e-97
Identities = 184/311 (59%), Positives = 237/311 (76%), Gaps = 5/311 (1%)
Query: 4 RIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRR 63
+ ++V+ + + +GK V++ + A+ L +G++L ED PGL KTL+AK+FAK LGL +RR
Sbjct: 6 KAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRR 65
Query: 64 IQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEER 123
+QFTPDLLP+DI+G V+ + FE KGP+FTN+LLADEINRAPPKTQSALLEAM+ER
Sbjct: 66 VQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQER 125
Query: 124 QVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILK 183
QVTIEG T++L +PF VIATQNP+E EGTYPLPEAQLDRFLVRL VGYP S++EE EILK
Sbjct: 126 QVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYP-SKEEEKEILK 184
Query: 184 ARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER-VEA 242
R+ DD V++ VLS E+ L MQR +E EV V D I+ YI +V RED+R +E
Sbjct: 185 RRIERKMDD--VEINTVLSPEDILRMQREIE-EVYVSDAIIEYITSLVWATREDKREIEV 241
Query: 243 GPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIV 302
G SPRG+LAL+KLS+A A IEGRD+VIPDDVKA + ALSHRI+LK E R + +I+
Sbjct: 242 GVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDII 301
Query: 303 EEAVNEVPVPK 313
++ + +VPVPK
Sbjct: 302 KKILEKVPVPK 312
>pir||B71126 hypothetical protein PH0776 - Pyrococcus horikoshii
>gi|3257185|dbj|BAA29868.1| (AP000003) 314aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 314
Score = 351 bits (892), Expect = 5e-96
Identities = 183/314 (58%), Positives = 238/314 (75%), Gaps = 5/314 (1%)
Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
+ ++ + VI + + +GK V++ V A L +G++L ED PGL KTL+AK+FAK LGL
Sbjct: 3 VQKKAQMVIEEVKKAIVGKDNVLKLVLATILADGHILIEDLPGLAKTLMAKSFAKALGLE 62
Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
++R+QFTPDLLP+DI+G V+ + FE KGP+FTN+LLADEINRAPPKTQSALLEAM
Sbjct: 63 FKRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAM 122
Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
+ERQVTIEG T++L +PF VIATQNP+E EGTYPLPEAQLDRFLVRL +GYP S+DEE E
Sbjct: 123 QERQVTIEGVTYKLPKPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRMGYP-SKDEEKE 181
Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER- 239
IL+ R+ +D+ V+++ VLS ++ L+MQR VE +V V D I+ YI +V RED+R
Sbjct: 182 ILRRRIERKQDE--VEIETVLSPKDVLKMQREVE-DVYVSDAIIEYITSLVWATREDKRD 238
Query: 240 VEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLER 299
+E G SPRG+LAL+KLS+A A IEGRD+VIPDDVKA I ALSHRI+LK E R +
Sbjct: 239 IEIGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAIPALSHRIILKRELWYTRVSQE 298
Query: 300 EIVEEAVNEVPVPK 313
++E+ + VPVPK
Sbjct: 299 SVIEKILERVPVPK 312
>pir||B70947 probable moxR3 protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2827574|emb|CAA16629.1| (AL021646) moxR3
[Mycobacterium tuberculosis]
Length = 320
Score = 304 bits (770), Expect = 1e-81
Identities = 154/308 (50%), Positives = 212/308 (68%), Gaps = 4/308 (1%)
Query: 6 EEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQ 65
E V++ I V +GK + + A L G+VL ED PGLGKTL+A++FA LGL++ R+Q
Sbjct: 13 EAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQ 72
Query: 66 FTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQV 125
FTPDLLPAD++G+ ++ + G FE GPIFTN+LLADEINR PPKTQ+ALLEAM E QV
Sbjct: 73 FTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQV 132
Query: 126 TIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKAR 185
+I+G+T +L PF V+AT NP+E+EGTYPLPEAQLDRF +RL + Y SE +E +L+ R
Sbjct: 133 SIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYL-SERDETSMLRRR 191
Query: 186 LRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPS 245
L G DPTV+ V+ + L M+ VE +V VH+D+L Y+V + R +V G S
Sbjct: 192 LERGSADPTVN--QVVDCHDLLAMRESVE-QVTVHEDVLHYVVSLANATRHHPQVAVGAS 248
Query: 246 PRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEA 305
PR L L++LS+A A + GRD+VIP+DVK A++HRI L+PE + + ++V E
Sbjct: 249 PRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSEL 308
Query: 306 VNEVPVPK 313
+ +PVP+
Sbjct: 309 LRRLPVPR 316
>dbj|BAB04323.1| (AP001509) methanol dehydrogenase regulatory protein [Bacillus
halodurans]
Length = 318
Score = 303 bits (767), Expect = 2e-81
Identities = 153/310 (49%), Positives = 212/310 (68%), Gaps = 5/310 (1%)
Query: 3 ERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYR 62
+RI VI ++ V +GK + + A +G+VL ED PG+GKT+L KA A+ LG +++
Sbjct: 6 QRIARVIENVERVVVGKRQEIELSLVALFASGHVLLEDVPGVGKTMLVKAIARSLGADFK 65
Query: 63 RIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEE 122
RIQFTPDLLP+D+ G ++ + FE GPI NV+LADEINR PKTQSALLEA+EE
Sbjct: 66 RIQFTPDLLPSDVTGVSIYNQKTQQFEFRPGPIMANVVLADEINRTSPKTQSALLEALEE 125
Query: 123 RQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEIL 182
VTIEG++ L +PFFV+ATQNP+E+ GTYPLPEAQLDRFL RL +GYP DEE+++L
Sbjct: 126 GSVTIEGKSLVLSKPFFVMATQNPVEYAGTYPLPEAQLDRFLFRLQLGYP-KPDEELDVL 184
Query: 183 KARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEA 242
K R K P +L PV+ EE +++Q ++ +V V D++ YIV IV R+ ++VE
Sbjct: 185 K---RLEKKHPIQELSPVMETEEVIQLQEEIK-DVFVEDNVKAYIVEIVNLTRKHQKVEL 240
Query: 243 GPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIV 302
G SPRG++A+MK ++A A I+GRD+VIPDD+K ALSHR++L E + EI+
Sbjct: 241 GVSPRGSIAMMKAAQAYAMIQGRDYVIPDDIKTLAPFALSHRLILTAEAKMSGTDHEEII 300
Query: 303 EEAVNEVPVP 312
+ + + VP
Sbjct: 301 HDVLQQAKVP 310
>pir||H72289 hypothetical protein TM1132 - Thermotoga maritima (strain MSB8)
>gi|4981679|gb|AAD36208.1|AE001771_1 (AE001771) moxR
protein, putative [Thermotoga maritima]
Length = 305
Score = 297 bits (753), Expect = 1e-79
Identities = 155/309 (50%), Positives = 216/309 (69%), Gaps = 5/309 (1%)
Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64
IE VIN+I +V GK E + V AA L G+VL ED PG+GKT+LA+A A LG+++RR+
Sbjct: 2 IERVINNIEKVIKGKREAIEVVVAALLAKGHVLMEDVPGVGKTMLARALALSLGVDFRRV 61
Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124
QFTPDLLP D+ G ++ +K F KGP+FT+VLLADEINRA P+TQSALLEAM E Q
Sbjct: 62 QFTPDLLPTDLTGLYIYDRKKEDFVFKKGPVFTDVLLADEINRATPRTQSALLEAMAEGQ 121
Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184
VT++G T RL + FFVIATQNP+E+EGT+PLPEAQLDRF++ + +GYP E+ E+++L +
Sbjct: 122 VTVDGVTHRLSERFFVIATQNPIEYEGTFPLPEAQLDRFMICVKMGYP-DEEAEIQMLTS 180
Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244
+ K+ P L+PV++ +E E+Q++V + V V D++ +YIV I R + G
Sbjct: 181 Q---EKEHPISQLEPVMNPDELSELQKKVRN-VFVSDEVKKYIVDIASATRNHPSLLLGM 236
Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEE 304
SPRG++ALM S A AF++GRDF +PDDVK + + HR++ E L+R + +IV E
Sbjct: 237 SPRGSIALMHFSMALAFMDGRDFTLPDDVKRAAVYVIPHRVIQSAESKLKREKKEDIVRE 296
Query: 305 AVNEVPVPK 313
++ V V K
Sbjct: 297 ILDRVKVVK 305
>pir||G71146 hypothetical protein PH0385 - Pyrococcus horikoshii
>gi|3256777|dbj|BAA29460.1| (AP000002) 312aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 312
Score = 293 bits (743), Expect = 1e-78
Identities = 150/301 (49%), Positives = 210/301 (68%), Gaps = 6/301 (1%)
Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71
+ + +GK +V+ + A L G+V+ E PG+ KT +AK+FA+VLGL + RIQ TPDLL
Sbjct: 17 VHKAVVGKDDVIELLAIALLAEGHVMIEGVPGVAKTTIAKSFAQVLGLKFSRIQLTPDLL 76
Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131
PADI+GT + G+++I KGPIF NV+LADEINRA PKTQSALLEAM+ERQVTIEG T
Sbjct: 77 PADILGTVYYDQSDGLWKIKKGPIFANVVLADEINRAQPKTQSALLEAMQERQVTIEGRT 136
Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191
F LE+PF VIAT+NP+EFEG Y LPEAQ+DRF++ + +GYP + +EE+E+L+ + R
Sbjct: 137 FPLEKPFMVIATKNPIEFEGVYNLPEAQVDRFMLNIKIGYP-TREEEVEMLRKKDR---- 191
Query: 192 DPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALA 251
++ + S+E+ + M V+ VK +++L Y+ IV R+DER+ G SPR +
Sbjct: 192 GELGEVGRIFSREQIVRMINEVK-RVKTSEEVLHYLYEIVNETRKDERLIVGASPRASEH 250
Query: 252 LMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPV 311
L+ SKA AF+EGRD+VIPDDVK + L+HR+++K E+ +E +IV E + V V
Sbjct: 251 LLYASKAKAFLEGRDYVIPDDVKFLAVPVLAHRLLIKAEHEIEGIKGEDIVREILERVEV 310
Query: 312 P 312
P
Sbjct: 311 P 311
>pir||D75008 methanol dehydrogenase regulatory protein (moxr-2) PAB1296 -
Pyrococcus abyssi (strain Orsay)
>gi|5459020|emb|CAB50506.1| (AJ248288) methanol
dehydrogenase regulatory protein (moxR-2) [Pyrococcus
abyssi]
Length = 309
Score = 293 bits (743), Expect = 1e-78
Identities = 153/302 (50%), Positives = 211/302 (69%), Gaps = 8/302 (2%)
Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71
I + +GK +V+ + A L G+V+ E PG+ KT +AK FA+ LGL + RIQ TPDL
Sbjct: 14 IHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDLF 73
Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131
PADIIGT + G ++I KGPIF NV+LADEINRA PKTQSALLEAM+ERQVTIEG T
Sbjct: 74 PADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGRT 133
Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191
++LE+PF +IAT+NPLEFEG Y LPEAQLDRF++++ VGYP S++EE+E+LK KD
Sbjct: 134 YKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYP-SKEEELEMLKR-----KD 187
Query: 192 DPTV-DLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGAL 250
+ K V S+++ ++M + V++ D++L Y+ I+ R D+R+ G SPR A
Sbjct: 188 KGLFSEAKRVFSRDQIIKM-IELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAE 246
Query: 251 ALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVP 310
L+ SKA AF+EGRD+VIPDD+K+ + L+HR+++K EY +E +V E +N+V
Sbjct: 247 HLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVE 306
Query: 311 VP 312
VP
Sbjct: 307 VP 308
>pir||C69791 methanol dehydrogenase regulation homolog yeaC - Bacillus subtilis
>gi|1708641|gb|AAB62308.1| (U51115) YeaC [Bacillus
subtilis] >gi|2632946|emb|CAB12452.1| (Z99107) similar
to methanol dehydrogenase regulation [Bacillus subtilis]
Length = 320
Score = 290 bits (734), Expect = 2e-77
Identities = 149/301 (49%), Positives = 206/301 (67%), Gaps = 5/301 (1%)
Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71
I V +GK ++ AA L G+VL ED PG+GKT++ +A AK +G +++RIQFTPDLL
Sbjct: 18 INRVMVGKRDIAILSLAALLAKGHVLLEDVPGVGKTMMVRALAKSIGADFKRIQFTPDLL 77
Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131
P+D+ G ++ + FE GPI N++LADEINR PKTQSALLEAMEE VT++G T
Sbjct: 78 PSDVTGVSIYNAKTMEFEYRPGPIMGNIVLADEINRTSPKTQSALLEAMEEGSVTVDGHT 137
Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191
+L PFFV+ATQNP+E+EGTYPLPEAQLDRFL +L +GYP S +EE+++L + K
Sbjct: 138 MQLADPFFVMATQNPVEYEGTYPLPEAQLDRFLFKLRMGYP-SFNEELDVLSLQ---EKS 193
Query: 192 DPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALA 251
P L+PV++KE+F+ +QR V++ V+ D I YIV IV++ R+ V+ G SPRG++A
Sbjct: 194 HPIETLEPVIAKEDFIFLQREVQN-VRADDSIKEYIVEIVQKTRQHPSVQLGVSPRGSIA 252
Query: 252 LMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPV 311
LMK ++A A + RD+VIPDD++ L HR++L PE E IV E ++ V V
Sbjct: 253 LMKAAQAYALLHHRDYVIPDDIQYLAPFTLPHRMMLHPEAKFEGIQAEAIVREIMSAVKV 312
Query: 312 P 312
P
Sbjct: 313 P 313
>dbj|BAB04450.1| (AP001509) unknown conserved protein [Bacillus halodurans]
Length = 308
Score = 288 bits (730), Expect = 5e-77
Identities = 139/310 (44%), Positives = 215/310 (68%), Gaps = 3/310 (0%)
Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64
+++++ + +V IG+ + +R + A L G+VL E PG+GKT + + A + +++R+
Sbjct: 1 MQQLLQQMDQVIIGQQKNIRLLLTAFLAGGHVLLEGVPGIGKTKMVRELADLTDGDFKRV 60
Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124
QFTPD++P+D+ G ++ + F+++KGP+FTN+LLADEINR PP+TQ+ALLEAMEERQ
Sbjct: 61 QFTPDMMPSDVTGNVIFNSKDNDFQMVKGPVFTNLLLADEINRTPPRTQAALLEAMEERQ 120
Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184
VTI+GET++L PFFV+ATQNP+E+EGTYPLPEAQLDRFL +L V YP S + E++I+K
Sbjct: 121 VTIQGETYQLPDPFFVVATQNPIEYEGTYPLPEAQLDRFLFKLEVTYP-SLEAELQIVKG 179
Query: 185 RLRWGKDDPT-VDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAG 243
+ + + D + S E +++++++ +V V D ++ Y+V I+R+ RED+RV G
Sbjct: 180 HVPFFVEQGNETDGRSAFSLTELRKLRQQLQ-QVVVEDSLMEYMVTIIRKTREDQRVMNG 238
Query: 244 PSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVE 303
SPR +ALM ++A A ++GR FV PDD+K + AL HR+ L P+ LE ++
Sbjct: 239 ASPRAGIALMMAARAWALLDGRQFVTPDDIKTITVPALRHRLQLTPQVELEGETSDHFIQ 298
Query: 304 EAVNEVPVPK 313
E + VPVP+
Sbjct: 299 ETLASVPVPR 308
>gb|AAG18829.1| (AE004987) methanol dehydrogenase regulatory protein; MoxR
[Halobacterium sp. NRC-1]
Length = 318
Score = 288 bits (730), Expect = 5e-77
Identities = 149/305 (48%), Positives = 198/305 (64%), Gaps = 4/305 (1%)
Query: 8 VINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFT 67
V++ + I E + V L +G+VL ED PG GKTL A++ A LGL + R+QFT
Sbjct: 13 VVDEVAAAVIADREFLETVLVGFLADGHVLLEDVPGTGKTLTARSVATALGLEFSRVQFT 72
Query: 68 PDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTI 127
PDLLP D++GT V+ FE GP+F NV+LADEINRAPPKTQ+ALLEAMEE QVTI
Sbjct: 73 PDLLPTDVLGTHVFNERSREFEFRPGPVFANVVLADEINRAPPKTQAALLEAMEEGQVTI 132
Query: 128 EGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLR 187
+GET L +PFFVIATQNP++ EGT+PLPEAQLDRF+V ++GYP + E E+L R
Sbjct: 133 DGETMALPEPFFVIATQNPVDQEGTFPLPEAQLDRFVVSAAIGYPDAAGER-ELLARRAS 191
Query: 188 WGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPR 247
PTVD + +E + RR +V+V D+ Y+V + R RE RVE G SPR
Sbjct: 192 RDARSPTVD---AVLDDERVRALRRASEDVRVGSDLREYMVAVARATREHPRVEVGVSPR 248
Query: 248 GALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVN 307
G L + ++A A + GR++V+P DVK L+HR+VL P+ ++E + IVE ++
Sbjct: 249 GTQRLFEAARARAVVAGREYVVPADVKGLAGSVLAHRLVLTPDAAVENVAKGGIVEGVLD 308
Query: 308 EVPVP 312
EVPVP
Sbjct: 309 EVPVP 313
>pir||D75460 MoxR-related protein - Deinococcus radiodurans (strain R1)
>gi|6458637|gb|AAF10492.1|AE001944_3 (AE001944)
MoxR-related protein [Deinococcus radiodurans]
Length = 354
Score = 286 bits (724), Expect = 2e-76
Identities = 157/306 (51%), Positives = 207/306 (67%), Gaps = 5/306 (1%)
Query: 7 EVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQF 66
E+I ++ V +GK +V R AA L G+VL ED PG GKT+LA+A A LGL++RR+QF
Sbjct: 23 EIIANVARVLVGKEDVTRLALAAILAGGHVLLEDAPGTGKTVLARALAASLGLDFRRVQF 82
Query: 67 TPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVT 126
TPDLLP+D+ G V+RP G FE + GPIFT +LLADEINRA PKTQSALLEAM E QV+
Sbjct: 83 TPDLLPSDVTGVSVFRPATGTFEFVPGPIFTGILLADEINRATPKTQSALLEAMGEGQVS 142
Query: 127 IEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARL 186
G T RL QPF VIATQNP+E EGTY LPEAQLDRFL+RLSVGYP S ++E+E+L ARL
Sbjct: 143 ESGVTHRLPQPFVVIATQNPVEHEGTYRLPEAQLDRFLLRLSVGYP-SLEQEVEML-ARL 200
Query: 187 RWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSP 246
+ + P DL+ V + + L Q +V+ +V V D+ RY+ + R R+ +V G P
Sbjct: 201 Q--ERHPLQDLRAVAAPADLLAAQAQVQ-QVTVSSDVRRYLAALAARSRQHPQVTLGGGP 257
Query: 247 RGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAV 306
R +LAL +++A A+ +GR FV PDDV+ L+HR+ L E ++ ++V E +
Sbjct: 258 RASLALQGVAQALAWTQGRTFVTPDDVQQAAPGVLAHRLSLGIEARMQGLSAADVVREVL 317
Query: 307 NEVPVP 312
PVP
Sbjct: 318 AAEPVP 323
>pir||T35917 probable regulatory protein - Streptomyces coelicolor
>gi|4160330|emb|CAA22801.1| (AL035212) putative
regulatory protein [Streptomyces coelicolor A3(2)]
Length = 332
Score = 285 bits (722), Expect = 4e-76
Identities = 146/312 (46%), Positives = 208/312 (65%), Gaps = 4/312 (1%)
Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
+ E+ V+ IG +GK + + V A L G+VL ED PGLGKTLLA++FA LGL+
Sbjct: 15 VGEQAGAVLREIGRAVVGKPDALEHVMLAVLAGGHVLVEDLPGLGKTLLARSFATTLGLD 74
Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
+RRIQFTPDLLP+D+ GT ++ G GP+FT++LLADEINR PPKTQ+ALLEAM
Sbjct: 75 FRRIQFTPDLLPSDVTGTPLYDQRSGEMVFHPGPVFTHLLLADEINRTPPKTQAALLEAM 134
Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
E QVT++GET L PF VIAT NP+E+EGTY LPEAQLDRF +R+ +GY + EE+
Sbjct: 135 AESQVTVDGETRPLADPFLVIATANPVEYEGTYSLPEAQLDRFQLRVRMGYLAAR-EELA 193
Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240
+L+AR+ + P L+ + ++ + R V V++ DD+L Y V +V R+ ++
Sbjct: 194 MLRARI--DRAAPEAVLERLAGPDDVVAW-RAVVERVEIDDDLLEYAVALVGATRDHPQI 250
Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300
G SPRG LAL++L++A A ++GRD+V+P+DVK + AL+HR+ L+PE + +
Sbjct: 251 SIGASPRGGLALVQLARARAVLDGRDYVVPEDVKGLAVPALAHRVSLRPELWVREMSTDD 310
Query: 301 IVEEAVNEVPVP 312
++ E V+ V P
Sbjct: 311 VLREIVDSVGTP 322
>pir||T34964 probable regulatory protein - Streptomyces coelicolor
>gi|5689966|emb|CAB52003.1| (AL109663) putative
regulatory protein [Streptomyces coelicolor A3(2)]
Length = 337
Score = 277 bits (702), Expect = 9e-74
Identities = 144/310 (46%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64
+E V S+ +V GK EVVR L G++L ED PG+GKT+LAKA A+ + + RRI
Sbjct: 9 VERVRGSVEDVIEGKPEVVRLSLTVLLAEGHLLIEDVPGVGKTMLAKALARSIDCSVRRI 68
Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124
QFTPDLLP+DI G +W ++ FE G IF V++ DEINRA PKTQSALLE+MEERQ
Sbjct: 69 QFTPDLLPSDITGVSIWDQQRRDFEFKPGAIFAQVVIGDEINRASPKTQSALLESMEERQ 128
Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184
VTI+G+T+ L PF V+ATQNP+E EGTYPLPEAQ DRF+ R+S+GYP S + E+++L
Sbjct: 129 VTIDGQTYELPSPFMVVATQNPVEMEGTYPLPEAQRDRFMARVSIGYP-SPEAELQMLDV 187
Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244
G P DL+PV + L++ V V V D + RY V +V R + G
Sbjct: 188 H---GGASPLDDLQPVAHAHDILKLIEAV-RGVHVADPVRRYAVDLVAATRTHPDLRLGA 243
Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEE 304
SPR L L++ +KA+A + GRD+ +PDDV+A + L+HR++ + L R ++V+E
Sbjct: 244 SPRATLHLLRAAKASAALSGRDYALPDDVQALAVAVLAHRLLPTAQAQLNRRTAEQVVQE 303
Query: 305 AVNEVPVPKD 314
+ VP +
Sbjct: 304 ILQRTAVPAE 313
>pir||S75782 methanol dehydrogenase regulatory protein - Synechocystis sp.
(strain PCC 6803) >gi|1001272|dbj|BAA10517.1| (D64003)
MoxR [Synechocystis sp.]
Length = 303
Score = 277 bits (701), Expect = 1e-73
Identities = 142/286 (49%), Positives = 198/286 (68%), Gaps = 3/286 (1%)
Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
M E+I + ++ + +GK E +R V A L G+ L ED PG+GKTLLAK+ A+ +
Sbjct: 1 MREQISVLTQNLSQTIVGKDEAIRLVLVALLSGGHALLEDVPGVGKTLLAKSLARSINGK 60
Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
++R+Q TPDLLP DI GT +W P FE + GP F N+LLADEINRA P+TQ+ALLE M
Sbjct: 61 FQRVQCTPDLLPTDITGTNIWNPSSREFEFLPGPAFANILLADEINRATPRTQAALLEVM 120
Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
EE+QVT++GET + PFFVIATQNP+E++GT+PLPEAQLDRF + LS+GYP SE EE++
Sbjct: 121 EEKQVTVDGETRLVPHPFFVIATQNPIEYQGTFPLPEAQLDRFALSLSLGYP-SEAEELK 179
Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240
+L+ R + + DL+ +S EE +Q+ V +VK+ +D+ +Y++R+VR R DE V
Sbjct: 180 MLQ-RQQNPEAIAVGDLESCISLEEVEALQKAV-RQVKLTEDLQQYLLRLVRASRTDEDV 237
Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIV 286
G SPRG AL + ++A AF+E RD+ I DDVK L+HR++
Sbjct: 238 TLGVSPRGTTALQRATQAFAFLEERDYAIDDDVKFVAPHVLAHRLI 283
>emb|CAC12049.1| (AL445065) regulatory protein moxR related protein [Thermoplasma
acidophilum]
Length = 319
Score = 274 bits (694), Expect = 8e-73
Identities = 147/318 (46%), Positives = 210/318 (65%), Gaps = 13/318 (4%)
Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
+ + + SIG+ IG +VR +F A L ++L E PGL KT+LA FA+ +
Sbjct: 10 LRNTVISIEESIGKRVIGSRRIVRFMFIALLTGNHILMEGVPGLAKTMLANEFARHTRMK 69
Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
+RRIQFTPD+LP+D+ GT ++ E E +GPIF NV+LADEINR PPK QSALLEAM
Sbjct: 70 FRRIQFTPDMLPSDVTGTIMFNIESRKMEFKEGPIFANVILADEINRTPPKVQSALLEAM 129
Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
EE QVTI GET L +PFFVIATQNP+E EGT+PL EA +DRFL R + YP ED E+
Sbjct: 130 EETQVTIGGETHSLPKPFFVIATQNPIEQEGTFPLAEALMDRFLFRYYLEYPSRED-ELN 188
Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240
IL + ++ DDP++ L P +E +E + +V++ V + ++I +Y+V ++RR RE++ V
Sbjct: 189 ILNSIGKY--DDPSLVLMP----DEIIEFRSQVDN-VYISEEIKQYLVDLMRRTRENDLV 241
Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLE-----R 295
G SPR MK ++ANA I GR +VIP+D+ + L+HR++LKPE ++ +
Sbjct: 242 YLGASPRTTAKYMKAARANALISGRSYVIPEDITFMAFEILNHRLILKPEAIMDETDDPK 301
Query: 296 GLEREIVEEAVNEVPVPK 313
+ + I++ ++EVPVPK
Sbjct: 302 LIVKRIIDRVLSEVPVPK 319
>pir||C83106 conserved hypothetical protein PA4322 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950546|gb|AAG07710.1|AE004848_9 (AE004848)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 335
Score = 261 bits (661), Expect = 6e-69
Identities = 131/302 (43%), Positives = 197/302 (64%), Gaps = 4/302 (1%)
Query: 14 EVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPA 73
+ IG+ V+ V A L G+VL E PGLGKTLL +A A+ + RIQFTPDL+P+
Sbjct: 35 KALIGQGAVIDDVLTALLAGGHVLVEGVPGLGKTLLVRALARCFDGGFARIQFTPDLMPS 94
Query: 74 DIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFR 133
D+ G V+ F++ KGP+FT++LLADEINRAP KTQ+ALLE M+ERQVT+EG
Sbjct: 95 DVTGHAVYDLASEQFKLRKGPVFTHLLLADEINRAPAKTQAALLEVMQERQVTLEGRALP 154
Query: 134 LEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDD- 192
+ QPF V+ATQNP+E EGTYPLPEA+LDRF+++L + YP +E EE +++ R + D
Sbjct: 155 VPQPFMVLATQNPIEQEGTYPLPEAELDRFMLKLRIDYP-AEAEEQTLVRQVTRSARSDM 213
Query: 193 -PTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALA 251
+L+P+L ++ L +Q R+ ++ + D +L Y VR+ R R + G PR ++A
Sbjct: 214 LDVANLRPLLKDKDVLALQ-RIASDLPIDDQVLDYAVRLARTTRNWPGLALGAGPRASIA 272
Query: 252 LMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPV 311
L++ +A A + G +FV+PDD+K + L HR+ L PE +E +++++ +++VP
Sbjct: 273 LVRCGRARALLRGGEFVVPDDIKGCALAVLRHRVRLSPELDIEGLSVDQVLQQLLDQVPA 332
Query: 312 PK 313
P+
Sbjct: 333 PR 334
>pir||H70321 conserved hypothetical protein aq_240 - Aquifex aeolicus
>gi|2982960|gb|AAC06575.1| (AE000680) hypothetical
protein [Aquifex aeolicus]
Length = 300
Score = 257 bits (649), Expect = 2e-67
Identities = 138/308 (44%), Positives = 197/308 (63%), Gaps = 10/308 (3%)
Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64
I +I+ + +V GK EV++ L G++L ED PG GKT LA A A+VLGL++ RI
Sbjct: 3 INLIISEVSKVIKGKEEVIKNSLVCLLSGGHLLIEDVPGTGKTTLALALARVLGLSFSRI 62
Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124
QFT DLLP+DI G V+ + FE KGPIF+NV+LADEINR PK QSALLEAM E+Q
Sbjct: 63 QFTSDLLPSDITGVSVFNQKTREFEFKKGPIFSNVVLADEINRGTPKVQSALLEAMAEKQ 122
Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184
V+++G T++L +PFFVIATQNP+E+ GTYPLPEAQLDRF +++S+GYP SE++E++I++
Sbjct: 123 VSVDGNTYKLPEPFFVIATQNPIEYYGTYPLPEAQLDRFTMKISMGYP-SEEDEVQIVQG 181
Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244
+ L + S EE + V+ E+ V ++ R+IV I +R V G
Sbjct: 182 ---INPMEKVSSLNVLSSPEEVIRTVNEVK-EIYVSPEVARFIVNIGNEVRNHPSVILGV 237
Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEE 304
S RG + L S+A A+ RDFV+P+DV + + HRI ++ E +++E
Sbjct: 238 STRGLIHLANASRALAYFRERDFVVPEDVLDLLKYVIPHRIKVREGVKAE-----AVLKE 292
Query: 305 AVNEVPVP 312
++ VP+P
Sbjct: 293 VISRVPIP 300
>emb|CAB90929.1| (AL355774) putative regulatory protein [Streptomyces coelicolor
A3(2)]
Length = 329
Score = 256 bits (647), Expect = 3e-67
Identities = 137/310 (44%), Positives = 191/310 (61%), Gaps = 2/310 (0%)
Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64
+E + I + +G+ V + A L G+VL E PG+ KTLL + A L+ +R+
Sbjct: 21 LEALRAEIAKAVVGQDAAVTGLVVALLCRGHVLLEGVPGVAKTLLVRTLAAATELDTKRV 80
Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124
QFTPDL+P+D+ G+ V+ F GP+FTN+LLADEINR PPKTQS+LLEAMEERQ
Sbjct: 81 QFTPDLMPSDVTGSLVYDARTTEFSFQPGPVFTNLLLADEINRTPPKTQSSLLEAMEERQ 140
Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184
VT++G L +PF V ATQNP+E+EGTYPLPEAQLDRFL++L+V P +DE + +
Sbjct: 141 VTVDGTPRLLPEPFLVAATQNPVEYEGTYPLPEAQLDRFLLKLTVPLPTRQDEIDVLTRH 200
Query: 185 RLRWG-KDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAG 243
+ +D ++PV S + LE R + V +I Y+V I R RE + G
Sbjct: 201 AAGFNPRDLRAAGVRPVASAAD-LEAARAEAAKTTVSPEITAYVVDICRATRESPSLTLG 259
Query: 244 PSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVE 303
SPRGA AL+ ++A A++ GRD+V PDDVKA + L HR+ L+PE +E ++
Sbjct: 260 VSPRGATALLSTARAWAWLTGRDYVTPDDVKALALPTLRHRVQLRPEAEMEGVTADSVIN 319
Query: 304 EAVNEVPVPK 313
+ VPVP+
Sbjct: 320 AILAHVPVPR 329
>pir||E70792 probable regulatory protein - Mycobacterium tuberculosis (strain
H37RV) >gi|2960116|emb|CAA18014.1| (AL022121) moxR2
[Mycobacterium tuberculosis]
Length = 358
Score = 256 bits (646), Expect = 3e-67
Identities = 136/302 (45%), Positives = 188/302 (62%), Gaps = 2/302 (0%)
Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71
+ + +G+ V+ + A L G+VL E PG+ KTL+ +A + L L ++R+QFTPDL+
Sbjct: 59 VAKAVVGQDGVISGLVIALLCRGHVLLEGVPGVAKTLIVRAMSAALQLEFKRVQFTPDLM 118
Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131
P D+ G+ V+ F GP+FTN+LLADEINR PPKTQ+ALLEAMEERQV++EGE
Sbjct: 119 PGDVTGSLVYDARTAEFVFRPGPVFTNLLLADEINRTPPKTQAALLEAMEERQVSVEGEP 178
Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191
L PF V ATQNP+E+EGTY LPEAQLDRFL++L+V P + D E+ IL
Sbjct: 179 KPLPNPFIVAATQNPIEYEGTYQLPEAQLDRFLLKLNVTLP-ARDSEIAILDRHAHGFDP 237
Query: 192 DPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALA 251
+ PV E + V H V V +++L YIV IV R ++ G SPRGA A
Sbjct: 238 RDLSAINPVAGPAELAAGREAVRH-VLVANEVLGYIVDIVGATRSSPALQLGVSPRGATA 296
Query: 252 LMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPV 311
L+ +++ A++ GRD+V PDDVKA L HR++L+PE LE +++ + VPV
Sbjct: 297 LLGTARSWAWLSGRDYVTPDDVKAMARPTLRHRVMLRPEAELEGATPDGVLDGILASVPV 356
Query: 312 PK 313
P+
Sbjct: 357 PR 358
>pir||G82635 methanol dehydrogenase regulatory protein XF1813 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106890|gb|AAF84619.1|AE004002_9 (AE004002) methanol
dehydrogenase regulatory protein [Xylella fastidiosa]
Length = 317
Score = 254 bits (643), Expect = 8e-67
Identities = 132/288 (45%), Positives = 187/288 (64%), Gaps = 5/288 (1%)
Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64
++E N + + +GK + VR F A L G++L ED PGLGKT LA A A LGL +RR+
Sbjct: 18 LDEAQNQVNTLLLGKEQEVRLAFVALLSGGHLLLEDLPGLGKTTLAHALASSLGLTFRRV 77
Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124
QFT DLLPAD++G V+ + FE GP+FT+VLLADEINRAPP+TQSALLEAM E+Q
Sbjct: 78 QFTSDLLPADVLGISVYNTQTQQFEFHPGPVFTHVLLADEINRAPPRTQSALLEAMAEQQ 137
Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184
VT++G T L PFFVIATQNP++ GT+PLP++QLDRFL+RLS+GYP +E E +
Sbjct: 138 VTLDGITRSLSDPFFVIATQNPVDLYGTFPLPDSQLDRFLLRLSLGYPNAEAERTLLSGM 197
Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244
R + P L++ + + + R+ V V D ++ Y+ ++ R R+ V G
Sbjct: 198 DRR----ELLTHTLPRLTEADVI-LLRKTVLGVHVSDALIEYVQALLLRSRQQSGVRVGL 252
Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYS 292
SPR +AL++ +KA A + GR+ V+P+D++ + HR+V + E S
Sbjct: 253 SPRAGIALLRAAKAYALLSGREHVLPEDIQELFVSVAGHRLVPEAETS 300
>pir||F72606 probable methanol dehydrogenase regulator APE1317 - Aeropyrum
pernix (strain K1) >gi|5104994|dbj|BAA80308.1|
(AP000061) 306aa long hypothetical methanol
dehydrogenase regulator [Aeropyrum pernix]
Length = 306
Score = 253 bits (639), Expect = 2e-66
Identities = 139/312 (44%), Positives = 193/312 (61%), Gaps = 6/312 (1%)
Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
M + + + +V +GK +R V AA G+VL E PG+ KT +A+A A+ GL
Sbjct: 1 MEKVFARISEEVSKVIVGKEREIRLVLAALAARGHVLLEGVPGVAKTTMARAIARATGLR 60
Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
+ RIQFTPD+LP+D+IGT V+ G F +GP+F NV+LADE+NRA P+TQSA LEAM
Sbjct: 61 FSRIQFTPDMLPSDVIGTMVYDQRTGEFVFRRGPVFANVVLADEVNRANPRTQSAFLEAM 120
Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
+E QVT+ GET RL PF V+AT NP+E EG YPLPEAQLDRF+ R+ VG+P S +E +E
Sbjct: 121 QEGQVTVWGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARVVVGHP-SLEELVE 179
Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240
I++ + R + P ++PV E+ + Q V +V V +I YI RIV + V
Sbjct: 180 IME-KYRSITEFP---VEPVARPEDIVAAQEAV-WKVHVDKNIKLYIARIVEETHKHPGV 234
Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300
G SPR AL++M L++ A ++G +V PD VK AL HR++L E LE
Sbjct: 235 SLGGSPRAALSIMMLARGLALLDGLGYVTPDHVKEAARAALPHRLILTTEAKLEGLKPES 294
Query: 301 IVEEAVNEVPVP 312
+VE+ ++ V P
Sbjct: 295 VVEDVLSSVETP 306
>pir||D72767 hypothetical protein APE0127 - Aeropyrum pernix (strain K1)
>gi|5103517|dbj|BAA79038.1| (AP000058) 314aa long
hypothetical protein [Aeropyrum pernix]
Length = 314
Score = 252 bits (637), Expect = 4e-66
Identities = 139/310 (44%), Positives = 190/310 (60%), Gaps = 9/310 (2%)
Query: 3 ERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYR 62
E + V + IGK V+ A + G++L E PG+ KT LAKA A GL +
Sbjct: 14 EVLARVKREVARFVIGKEREVKLALATMIAKGHLLVEGVPGVAKTTLAKALAGAFGLRFS 73
Query: 63 RIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEE 122
RIQFTPD LP+D+IGT V+ VF +GP+F NV+LADE+NRA P+TQSA LEAM+E
Sbjct: 74 RIQFTPDTLPSDVIGTHVYVGNGFVFR--RGPVFANVVLADEVNRANPRTQSAFLEAMQE 131
Query: 123 RQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEIL 182
QVT+ GET RL PF V+AT NP+E EG YPLPEAQLDRF+ R+ +GYP + EE++I+
Sbjct: 132 GQVTVWGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARIRLGYP-TRVEEIKII 190
Query: 183 KARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEA 242
+ G + ++++P S E+ +Q + V ++ YI IVR R E VE
Sbjct: 191 EK----GDEVEDLNVEPAASPEDLKRLQ-DTARRIYVDRKLVEYIADIVRETRRIEEVEI 245
Query: 243 GPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIV 302
G SPR + ++KLS+A A + GRDF PDDVK AL HR+ L+ Y + + +V
Sbjct: 246 GASPRAGIHILKLSRALALMSGRDFATPDDVKEAARAALPHRLKLRKVY-ISKHSSEGLV 304
Query: 303 EEAVNEVPVP 312
E+ + +VP P
Sbjct: 305 EDVLKKVPPP 314
>pir||H70121 methanol dehydrogenase regulator (moxR) homolog - Lyme disease
spirochete >gi|2688061|gb|AAC66559.1| (AE001128)
methanol dehydrogenase regulator (moxR) [Borrelia
burgdorferi]
Length = 337
Score = 250 bits (633), Expect = 1e-65
Identities = 137/304 (45%), Positives = 196/304 (64%), Gaps = 11/304 (3%)
Query: 17 IGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPADII 76
+G+ E++ + L +G+VL E PGL KTL + + VL L ++RIQFTPDLLP+D+
Sbjct: 37 LGQKEMIDAILMGLLTDGHVLLEGVPGLAKTLAIQTVSDVLDLEFKRIQFTPDLLPSDLT 96
Query: 77 GTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRLEQ 136
G V++ G F++ KGP+F+NV+LADEINRAP K QSALLEAM ERQVT+ ET RL
Sbjct: 97 GNMVYKSATGTFKVRKGPVFSNVILADEINRAPAKVQSALLEAMGERQVTLGDETHRLPD 156
Query: 137 PFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDDPTVD 196
PFFV+ATQNP+E EGTY LPE+QLDRFL++++V YP +D E+ +LK G+ + +
Sbjct: 157 PFFVLATQNPIEQEGTYNLPESQLDRFLLKVNVHYPSVQD-EVRLLKIFSVDGRLE-NIK 214
Query: 197 LKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER--------VEAGPSPRG 248
+ V++ +++R V VKV D I+ YIV ++ RE ++ +E G SPR
Sbjct: 215 VAKVMNAYSLADIKRTV-GRVKVDDKIMLYIVTLISASRERDKKTYPFAKYIEFGASPRA 273
Query: 249 ALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNE 308
+L+L+K ++ NA EGR FV+P+DVKA L HRI E +E +I+ ++
Sbjct: 274 SLSLLKCARVNALYEGRIFVLPEDVKAVAYSVLRHRITPSYEAEVEEMSIDDIIRMLLSA 333
Query: 309 VPVP 312
V +P
Sbjct: 334 VALP 337
>pir||H83287 conserved hypothetical protein PA2875 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948964|gb|AAG06263.1|AE004713_12 (AE004713)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 305
Score = 250 bits (633), Expect = 1e-65
Identities = 136/285 (47%), Positives = 182/285 (63%), Gaps = 5/285 (1%)
Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
M +E + ++ E+ +GK VR A L G++L ED PG+GKT L+ A A+VLGL+
Sbjct: 1 MLNTLEACLKAVDEILLGKDRQVRLALACLLARGHLLIEDLPGMGKTTLSHALARVLGLS 60
Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
++RIQFT DLLP DI+GT V+ + G F GPIF ++LADEINRA PK+QSALLEAM
Sbjct: 61 FQRIQFTSDLLPGDILGTSVFDKDSGQFVFHPGPIFAELVLADEINRATPKSQSALLEAM 120
Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
EE QVTIEG T L +PFFVIATQNP GT+ LPE+QLDRFL+RLS+GYPG E
Sbjct: 121 EEGQVTIEGATRPLPEPFFVIATQNPASQGGTFSLPESQLDRFLMRLSLGYPGRAAERSL 180
Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240
+L R D L+P+L Q V +++ D ++ Y++R+V R
Sbjct: 181 LLGEARR----DLLPRLEPLLDHAALAAFQAEVP-KIRASDALVDYVLRLVEATRTQPAF 235
Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRI 285
G SPRG+LAL+ ++A A + GRD+VIP+DV+A + HR+
Sbjct: 236 ALGLSPRGSLALLAAARAWALLAGRDYVIPEDVQAVLPAVAGHRL 280
>emb|CAB98184.1| (AJ276161) putative regulatory protein [Streptomyces sparsogenes]
Length = 335
Score = 249 bits (630), Expect = 3e-65
Identities = 129/304 (42%), Positives = 186/304 (60%), Gaps = 5/304 (1%)
Query: 10 NSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPD 69
++I V GK + V G++L ED PG GKT LA+ A L ++ R+QFTPD
Sbjct: 32 DNIERVVKGKRDTVELALVCLFSEGHLLIEDVPGTGKTTLARCLAASLEADWHRVQFTPD 91
Query: 70 LLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEG 129
LLP+DI G V+R G FE + GP+F N++L DEINRA PKTQSA+LE MEERQVT +G
Sbjct: 92 LLPSDITGVTVYRQNTGTFEFLPGPVFANIVLGDEINRASPKTQSAMLEVMEERQVTADG 151
Query: 130 ETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWG 189
T + +PF VIATQN ++ GTYPLPEAQLDRFL+++++GYP D E+ A L
Sbjct: 152 STHPVPRPFMVIATQNSVDMGGTYPLPEAQLDRFLMQVTLGYP---DHASEV--AVLSGA 206
Query: 190 KDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGA 249
+++ P ++ + +V +++V + Y+VR+V R V G SPRG+
Sbjct: 207 ASQTSIEQLPTIATGRHIAEFIQVARQIQVAPQLYDYLVRVVAATRSLPEVRLGASPRGS 266
Query: 250 LALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEV 309
+AL++ + A +GR + +P+DVKA L+HR++L PE L +++ EA+ V
Sbjct: 267 VALLRAVRVRAASQGRTYALPEDVKALAGPVLAHRLILTPEAELSGRCGADVIAEALATV 326
Query: 310 PVPK 313
PVP+
Sbjct: 327 PVPQ 330
>pir||S74593 MorR protein - Synechocystis sp. (strain PCC 6803)
>gi|1651818|dbj|BAA16745.1| (D90900) MorR protein
[Synechocystis sp.]
Length = 314
Score = 247 bits (625), Expect = 1e-64
Identities = 123/298 (41%), Positives = 195/298 (65%), Gaps = 2/298 (0%)
Query: 17 IGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPADII 76
+G+ +++++ A L G+V+ E PG GKTLL K A+ + +RR+Q TPD+LP+D++
Sbjct: 18 VGQPHLIQELLVALLAGGHVIIEGVPGTGKTLLVKLLAQSIQSQFRRVQLTPDMLPSDMV 77
Query: 77 GTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRLEQ 136
G V+ + F + +GP+FT +LLADEINR PPKTQSALLEAMEE+QVT++G T+ L
Sbjct: 78 GVNVFDFNQQAFSLKQGPVFTEILLADEINRTPPKTQSALLEAMEEQQVTLDGHTYALPP 137
Query: 137 PFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDDPTVD 196
F+V+ATQNPLEFEGTYPLPEAQLDRFL +L V YP + ++ + + ++
Sbjct: 138 LFWVVATQNPLEFEGTYPLPEAQLDRFLFKLVVDYPPPAAAKQMLVNFQQGFHAQRQDLE 197
Query: 197 -LKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALALMKL 255
L + + EE L +R VE ++ V + +L Y++ +V + R + G SPR +L ++
Sbjct: 198 QLTAIATVEEILASRRSVE-DIAVDEKLLDYLLALVEKTRYHPDILIGASPRASLRWLQA 256
Query: 256 SKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPVPK 313
+KA+A++ G+++++PD++K L HR++L+PE L+ E++ + + PVP+
Sbjct: 257 AKADAWLNGQEYLLPDNLKTVAPPLLRHRLILRPEAQLDGIGIDEVITAILEQTPVPR 314
>pir||B75496 moxR protein - Deinococcus radiodurans (strain R1)
>gi|6458321|gb|AAF10200.1|AE001920_3 (AE001920) moxR
protein [Deinococcus radiodurans]
Length = 320
Score = 243 bits (613), Expect = 3e-63
Identities = 132/308 (42%), Positives = 182/308 (58%), Gaps = 9/308 (2%)
Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64
+ + + +V +GK +R A L G++L ED PG+GKT LA+A A+ LGL +RR+
Sbjct: 22 MHRALEQLDQVILGKPTQLRLAVACLLARGHLLIEDQPGVGKTTLAQALARTLGLGFRRV 81
Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124
QFT DLLPAD++G +W F GPIF+ +LLADEINRA P+TQ ALLEAMEERQ
Sbjct: 82 QFTSDLLPADLLGVSIWDAASSTFRYQPGPIFSELLLADEINRATPRTQGALLEAMEERQ 141
Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184
V+ G T L PFFVIATQNP F GT PLPEAQLDRFL+ +++GYP + E +
Sbjct: 142 VSEGGVTRPLPDPFFVIATQNPAAFVGTSPLPEAQLDRFLMTVTLGYPDARAERTLLETG 201
Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244
G+ +L VL L Q V+ V +L Y+ + R RE + +G
Sbjct: 202 ----GRGQSVRELPAVLDAPLLLRAQAEVD-AVHAAPALLDYLQLLARATREQPAIASGL 256
Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEE 304
SPR LAL+ ++A A++ GRD V+P+DV+A SHR+VL+ +++
Sbjct: 257 SPRALLALLAAARAWAYLAGRDMVLPEDVQAVFPALASHRLVLRD----PAARPGDVIRR 312
Query: 305 AVNEVPVP 312
++E P+P
Sbjct: 313 LLDETPIP 320
>pir||B70874 probable moxR protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2791413|emb|CAA16007.1| (AL021184) moxR
[Mycobacterium tuberculosis]
Length = 377
Score = 241 bits (608), Expect = 1e-62
Identities = 138/324 (42%), Positives = 194/324 (59%), Gaps = 26/324 (8%)
Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64
+E I + + +G+ ++V ++ L G+VL E PG+ KTL + FA+V+G + RI
Sbjct: 43 LERAIFEVKRIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKTLAVETFARVVGGTFSRI 102
Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124
QFTPDL+P DIIGT+++R + F+ GP+ N LLADEINRAP K QSALLE M+ER
Sbjct: 103 QFTPDLVPTDIIGTRIYRQGREEFDTELGPVVANFLLADEINRAPAKVQSALLEVMQERH 162
Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184
V+I G TF + PF V+ATQNP+E EG YPLPEAQ DRFL +++VGYP S +EE EI+
Sbjct: 163 VSIGGRTFPMPSPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGYP-SPEEEREII-- 219
Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER----- 239
R G P K +LS + L +Q + VH ++ Y+VR+V R+ E+
Sbjct: 220 -YRMGVTPPQA--KQILSTGDLLRLQEIAANNF-VHHALVDYVVRVVFATRKPEQLGMND 275
Query: 240 ----VEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVL-------- 287
V G SPR +L ++ +++ A + GRD+VIP DV + D L HR+VL
Sbjct: 276 VKSWVAFGASPRASLGIIAAARSLALVRGRDYVIPQDVIEVIPDVLRHRLVLTYDALADE 335
Query: 288 -KPEYSLERGLEREIVEEAVNEVP 310
PE + R L+ + + VN VP
Sbjct: 336 ISPEIVINRVLQTVALPQ-VNAVP 358
>emb|CAA65298.1| (X96434) moxR [Borrelia burgdorferi] >gi|2689172|emb|CAA06007.1|
(AJ003222) moxR [Borrelia burgdorferi]
Length = 329
Score = 240 bits (607), Expect = 1e-62
Identities = 135/304 (44%), Positives = 193/304 (63%), Gaps = 12/304 (3%)
Query: 17 IGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPADII 76
+G+ E++ + L +G+VL E PGL KTL + + VL L ++RIQFTPDLLP+D+
Sbjct: 30 LGQKEMIDAILMGLLTDGHVLLEGVPGLAKTLAIQTVSDVLDLEFKRIQFTPDLLPSDLT 89
Query: 77 GTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRLEQ 136
G V++ G F++ KGP+F+NV+LADEINRAP K QSALLEAM ERQVT+ ET RL
Sbjct: 90 GNMVYKSATGTFKVRKGPVFSNVILADEINRAPAKVQSALLEAMGERQVTLGDETHRLPD 149
Query: 137 PFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDDPTVD 196
PFFV+ATQNP+E EGTY LPE+QLDRFL++++V YP +D E+ +LK G+ + +
Sbjct: 150 PFFVLATQNPIEQEGTYNLPESQLDRFLLKVNVHYPSVQD-EVRLLKIFSVDGRLE-NIK 207
Query: 197 LKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER--------VEAGPSPRG 248
+ V++ +++R V VKV DD + I + RE ++ +E G SPR
Sbjct: 208 VAKVMNAYSLADIKRTV-GRVKV-DDKIMLICYFISASRERDKKTYPFAKYIEFGASPRA 265
Query: 249 ALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNE 308
+L+L+K ++ NA EGR FV+P+DVKA L HRI E +E +I+ ++
Sbjct: 266 SLSLLKCARVNALYEGRIFVLPEDVKAVAYSVLRHRITPSYEAEVEEMSIDDIIRMLLSA 325
Query: 309 VPVP 312
V +P
Sbjct: 326 VALP 329
>pir||H82493 MoxR-related protein VCA0175 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9657565|gb|AAF96088.1| (AE004357)
MoxR-related protein [Vibrio cholerae]
Length = 318
Score = 235 bits (593), Expect = 6e-61
Identities = 125/291 (42%), Positives = 185/291 (62%), Gaps = 11/291 (3%)
Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71
+ + IG+ + + ++ A L +G++L E PGL KT K+ A + ++ RIQFTPDLL
Sbjct: 13 LNQQVIGQTDFINQLLIALLADGHILVEGPPGLAKTRAVKSLADCIEGDFHRIQFTPDLL 72
Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131
PAD+ G+ V+RPE G F GPIF ++LADEINRAP K Q+A+LEAM E+Q++ +T
Sbjct: 73 PADLTGSDVYRPETGEFVFQSGPIFNALVLADEINRAPAKVQAAMLEAMAEKQISAGRKT 132
Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191
+RL + F V+ATQNP+E EGTYPLPEAQLDRFL+ L V YP +ED E+ IL+ K
Sbjct: 133 YRLPELFLVMATQNPIEQEGTYPLPEAQLDRFLLHLEVNYPNAED-ELAILRLNRGEAKG 191
Query: 192 DPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEA--------G 243
++ KP+L++++ ++ V + V + + I Y+VR+V R +A G
Sbjct: 192 QQAIN-KPLLTQQQVFSARQEVLN-VHMAEAIENYLVRLVMATRHPANYDAKLAQWLTMG 249
Query: 244 PSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLE 294
SPR +AL + ++A+A+++GRDFV PDDV+ L HR++L + E
Sbjct: 250 VSPRATIALDRCARAHAWLQGRDFVTPDDVQVMAFSVLRHRLLLSYQAQAE 300
>pir||G83261 conserved hypothetical protein PA3070 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949177|gb|AAG06458.1|AE004731_6 (AE004731)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 326
Score = 228 bits (574), Expect = 9e-59
Identities = 126/301 (41%), Positives = 192/301 (62%), Gaps = 12/301 (3%)
Query: 17 IGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPADII 76
+G+ ++V ++ A L +G++L E PGL KT K A+ L + RIQFTPDLLPADI
Sbjct: 26 LGQEKLVDRLLIALLADGHLLVEGAPGLAKTKAIKDLAEGLEAEFHRIQFTPDLLPADIT 85
Query: 77 GTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRLEQ 136
GT+++RPE G F +GPIF +++LADEINRAP K QSALLEAM ERQV++ T+ L Q
Sbjct: 86 GTEIYRPETGTFVFQQGPIFHHLVLADEINRAPAKVQSALLEAMAERQVSVGRSTYDLPQ 145
Query: 137 PFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDDPTVD 196
F V+ATQNP+E EGTYPLPEAQLDRFL+ + +GYP + E + +AR + +
Sbjct: 146 LFLVMATQNPIEQEGTYPLPEAQLDRFLMHVKIGYPEASVERRILQQARGEALNGEARPE 205
Query: 197 LKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEA--------GPSPRG 248
+ +E + R+ + + D + Y+V+++ R + +A G SPRG
Sbjct: 206 RRVT---QETIFAARQEILGLYMADAVEEYLVQLIMATRTPAKHDAELAEWISYGASPRG 262
Query: 249 ALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNE 308
++AL + ++A+A++ GRDFV P+D++A + D L HR++L E + G++++ V + + +
Sbjct: 263 SIALDRCARAHAWLGGRDFVSPEDIQAVLFDVLRHRLILTFE-AEAAGIDQDRVVQRILD 321
Query: 309 V 309
V
Sbjct: 322 V 322
>pir||S43189 hypothetical protein - Pseudomonas aeruginosa
>gi|469101|emb|CAA46565.1| (X65613) ORF2 [Pseudomonas
aeruginosa]
Length = 263
Score = 199 bits (501), Expect = 3e-50
Identities = 102/182 (56%), Positives = 128/182 (70%)
Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60
M +E + ++ E+ +GK VR A L G++L ED PG+GKT L+ A A+ LGL+
Sbjct: 1 MLNTLEACLKAVDEILLGKDRQVRLALACLLARGHLLIEDLPGMGKTTLSHALARWLGLS 60
Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120
++RIQFT DLLP DI+GT V+ + G F GPIF ++LADEINRA PK+QSALLEAM
Sbjct: 61 FQRIQFTSDLLPGDILGTSVFDKDSGQFVFHPGPIFAELVLADEINRATPKSQSALLEAM 120
Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180
EE QVTIEG T L +PFFVIATQNP GT+ LPE+QLDRFL+RLS+GYPG E
Sbjct: 121 EEGQVTIEGATRPLPEPFFVIATQNPASQGGTFSLPESQLDRFLMRLSLGYPGRAAERSL 180
Query: 181 IL 182
+L
Sbjct: 181 LL 182
>gb|AAC46196.1| (AF002133) transcriptional regulator [Mycobacterium avium]
Length = 309
Score = 187 bits (471), Expect = 1e-46
Identities = 93/180 (51%), Positives = 125/180 (68%), Gaps = 1/180 (0%)
Query: 3 ERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYR 62
+ +E I + + +G+ ++V ++ L G+VL E PG+ K+L + FAKV+G +
Sbjct: 43 QTLERAIFEVKRIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKSLAVETFAKVVGGTFA 102
Query: 63 RIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEE 122
RIQFTP +P DIIGT+++R K F+ GP+ N LLADEINRAP K QSALLE M+E
Sbjct: 103 RIQFTPRPVPTDIIGTRIYRQGKEEFDTELGPVVVNFLLADEINRAPAKVQSALLEVMQE 162
Query: 123 RQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEIL 182
R V+I G+TF L PF V+ATQNP+E EG YPLPEAQ DRFL +++VGYP S +EE EI+
Sbjct: 163 RHVSIGGKTFPLPNPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGYP-SPEEEREII 221
>gb|AAB91544.1| (AF017119) MoxR homolog [Allochromatium vinosum]
Length = 191
Score = 180 bits (451), Expect = 2e-44
Identities = 89/167 (53%), Positives = 118/167 (70%)
Query: 3 ERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYR 62
+R + + +G +G+ ++ ++ A L +G++L E PGL KT K A L ++
Sbjct: 25 QRFAALRDQVGRAILGQHGLIERLLIALLADGHLLVEGAPGLAKTTAVKHLAAGLEGDFH 84
Query: 63 RIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEE 122
RIQFTPDLLPAD+ GT+++RP G F +GPIF N+LLADE+NRAP K QSALLEAM E
Sbjct: 85 RIQFTPDLLPADLTGTEIYRPHDGSFRFDRGPIFHNLLLADEVNRAPAKVQSALLEAMGE 144
Query: 123 RQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSV 169
RQVT+ ET+ L + F V+ATQNP+E EGTYPLPEAQLDRFL+ + V
Sbjct: 145 RQVTVGRETYPLPELFLVMATQNPIEQEGTYPLPEAQLDRFLLHVRV 191
>gb|AAB62561.1| (AF006054) MoxR [Mycobacterium tuberculosis]
Length = 211
Score = 174 bits (437), Expect = 1e-42
Identities = 83/158 (52%), Positives = 112/158 (70%)
Query: 15 VFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPAD 74
+ +G+ ++V ++ L G+VL E PG+ K+L + FA+V+G + RIQFTPDL+P D
Sbjct: 52 IIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKSLAVETFARVVGGTFSRIQFTPDLVPTD 111
Query: 75 IIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRL 134
IIGT+++R + F+ GP+ N LLA EINRAP K QSALLE M+ER V+I G TF +
Sbjct: 112 IIGTRIYRQGREEFDTELGPVVANFLLAVEINRAPAKVQSALLEVMQERHVSIGGRTFPM 171
Query: 135 EQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYP 172
PF V+ATQNP+E EG YPLPEAQ DRFL +++VG P
Sbjct: 172 PSPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGIP 209
>dbj|BAA23276.1| (AB004097) ORF4 [Hyphomicrobium methylovorum]
Length = 352
Score = 148 bits (370), Expect = 8e-35
Identities = 101/333 (30%), Positives = 164/333 (48%), Gaps = 30/333 (9%)
Query: 4 RIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRR 63
R E +G +G+ +R + A G+VL E G+GKT L +A A LG +Y R
Sbjct: 26 RALEFEGEVGRAIVGQERAIRLLVIAVFARGHVLLEGDVGVGKTTLLRAVAHALGGSYER 85
Query: 64 IQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIF-----TNVLLADEINRAPPKTQSALLE 118
++ T DL+P+D+I + E G + GP+ +V +EINRA P+ S LL
Sbjct: 86 VEGTIDLMPSDMI-YYTFLNEDGKPRVEPGPVLRHGSDLSVFFFNEINRARPQVHSLLLR 144
Query: 119 AMEERQVTIEGETFRLEQPF---FVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSE 175
M ER +T F E F V A +N +E E T+ LP A DRFL+ +S+G P ++
Sbjct: 145 LMAERSIT----AFNTEHFFPHVLVFADRNRIEREETFELPAAARDRFLMEVSIGSP-TD 199
Query: 176 DEEMEILKARLRWGKDDPTVDL--KPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRR 233
DE L R+ D + + V+ + + + ++ V V I +Y + + +
Sbjct: 200 DESRRALLFETRFHDVDQLIGALKEGVIDYRQINALAKIIQSSVVVSPAIEKYTLDLWKA 259
Query: 234 IRE-------------DERVEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDA 280
+R+ V G SPRG L++ ++ +A++ GR+ V+P+D++ +
Sbjct: 260 VRDPAAANVSIPGVDMTRLVAGGASPRGMSYLIRAARVSAWLAGREMVVPEDIRDIFYEC 319
Query: 281 LSHRIVLKPEYSLER-GLEREIVEEAVNEVPVP 312
++HRI L P Y L R L R ++++ VP P
Sbjct: 320 MAHRIFLSPVYELRREELVRSLIDQIFASVPAP 352
>sp|P30621|MOXR_METEX MOXR PROTEIN (MXAR PROTEIN) >gi|1771259|emb|CAA69191.1| (Y07864)
mxaR [Methylobacterium extorquens]
Length = 341
Score = 139 bits (346), Expect = 5e-32
Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 22/320 (6%)
Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71
I + +G+ +R + A G+V+ E G+GKT L +A A+ LG Y R++ T D++
Sbjct: 25 IAKAVVGQDRAIRLLTIAIFARGHVMLEGDVGVGKTTLLRAVARGLGGAYERVEGTVDMM 84
Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFT-----NVLLADEINRAPPKTQSALLEAMEERQVT 126
P D+I + E G + GP+ +V +EINRA P+ + LL M ER V+
Sbjct: 85 PTDLI-YHTYLGEDGRPRVEPGPVLRRAEDLSVFFFNEINRARPQVHALLLRIMAERSVS 143
Query: 127 IEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARL 186
+R V A +N +E E T+ LP A DRFL+ + + P + R
Sbjct: 144 AFNREYRFPN-LQVFADRNRVEREETFELPAAARDRFLMEIGMEAPRDAARRDLVFDPRF 202
Query: 187 RWGKDDPTVDLKP-VLSKEEFLEMQRRVEHEVKVHDDILRYIVRI------------VRR 233
D T +++ VL E + ++H + I Y+V + + R
Sbjct: 203 H-DTDRLTEEVEAGVLDFERIGTIASAIQHAISAEPAIEAYVVGLWEALVRPAPPHPLAR 261
Query: 234 IREDERVEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSL 293
R D V+ G SPRG L++ ++ A++EGRD+++P+D++A + ++HR+ L+P Y +
Sbjct: 262 HRMDRLVQGGASPRGVAFLVRAARVRAWLEGRDWLVPEDIRAVFPEVMAHRVFLEPVYEM 321
Query: 294 ERG-LEREIVEEAVNEVPVP 312
R + +++ VP P
Sbjct: 322 RRAEIVPDLIRAVFETVPAP 341
>sp|P29901|MOXR_PARDE MOXR PROTEIN >gi|94691|pir||D41377 methanol dehydrogenase
regulatory protein moxR [validated] - Paracoccus
denitrificans
Length = 339
Score = 127 bits (316), Expect = 2e-28
Identities = 96/334 (28%), Positives = 157/334 (46%), Gaps = 32/334 (9%)
Query: 4 RIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRR 63
R + ++ V +G+ +R + +AL G+VL G GKT L +A A+ LG Y R
Sbjct: 11 RFRDAEAALNGVVLGQARTIRLLLISALCRGHVLLAGDVGTGKTTLLRAMARALGGPYGR 70
Query: 64 IQFTPDLLPADII-GTKVWRPEKGVFEIMKGPIFTN-----VLLADEINRAPPKTQSALL 117
++ T DLLP D+I T + E G I GP+ V +EINRA P+ + LL
Sbjct: 71 VEGTVDLLPTDLIYSTHI--AEDGRPRIEPGPVLEQGEDMAVFFFNEINRARPQVHALLL 128
Query: 118 EAMEERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDE 177
M ER ++ +R V A +N +E + T+ LP A DRFL+ ++V P + ++
Sbjct: 129 RLMAERSLSAFRREYRFPH-LQVFADRNQIERDETFELPAAARDRFLMEIAVDAPAAPED 187
Query: 178 EMEI-LKARLRWGKDDPTVDL----KPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVR 232
+ + + R D T + + +L + V+ + RY+ +
Sbjct: 188 RVALAFEPRFH----DTTALIAEVGQGILPYRGLNGLAAGVQSGTHASPALRRYVFDLCE 243
Query: 233 RIRED-------------ERVEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVID 279
+R + G SPRG L++ ++A A++EGR+ V+P DV+A +
Sbjct: 244 ALRNPASAGLALEGADAARLIRGGVSPRGMQHLVRAARACAWLEGREAVLPQDVRAVLAP 303
Query: 280 ALSHRIVLKPEYSLER-GLEREIVEEAVNEVPVP 312
++HRI L P Y R L +++ A +PVP
Sbjct: 304 VMAHRIFLSPAYEPRREALVPALIDAAFATIPVP 337
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114479321
Number of Sequences: 2977
Number of extensions: 4800092
Number of successful extensions: 12749
Number of sequences better than 1.0e-10: 41
Number of HSP's better than 0.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12659
Number of HSP's gapped (non-prelim): 46
length of query: 317
length of database: 189,106,746
effective HSP length: 56
effective length of query: 261
effective length of database: 155,591,474
effective search space: 40609374714
effective search space used: 40609374714
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)