BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB1276 (moxR-1) DE:methanol dehydrogenase regulatory protein (moxR-1) (317 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||B75012 methanol dehydrogenase regulatory protein (moxr-1) P... 629 e-179 pir||F71139 hypothetical protein PH0329 - Pyrococcus horikoshii ... 520 e-147 gi|11500001 methanol dehydrogenase regulatory protein (moxR) [Ar... 391 e-108 pir||C75037 methanol dehydrogenase regulatory protein (moxr-3) P... 354 6e-97 pir||B71126 hypothetical protein PH0776 - Pyrococcus horikoshii ... 351 5e-96 pir||B70947 probable moxR3 protein - Mycobacterium tuberculosis ... 304 1e-81 dbj|BAB04323.1| (AP001509) methanol dehydrogenase regulatory pro... 303 2e-81 pir||H72289 hypothetical protein TM1132 - Thermotoga maritima (s... 297 1e-79 pir||G71146 hypothetical protein PH0385 - Pyrococcus horikoshii ... 293 1e-78 pir||D75008 methanol dehydrogenase regulatory protein (moxr-2) P... 293 1e-78 pir||C69791 methanol dehydrogenase regulation homolog yeaC - Bac... 290 2e-77 dbj|BAB04450.1| (AP001509) unknown conserved protein [Bacillus h... 288 5e-77 gb|AAG18829.1| (AE004987) methanol dehydrogenase regulatory prot... 288 5e-77 pir||D75460 MoxR-related protein - Deinococcus radiodurans (stra... 286 2e-76 pir||T35917 probable regulatory protein - Streptomyces coelicolo... 285 4e-76 pir||T34964 probable regulatory protein - Streptomyces coelicolo... 277 9e-74 pir||S75782 methanol dehydrogenase regulatory protein - Synechoc... 277 1e-73 emb|CAC12049.1| (AL445065) regulatory protein moxR related prote... 274 8e-73 pir||C83106 conserved hypothetical protein PA4322 [imported] - P... 261 6e-69 pir||H70321 conserved hypothetical protein aq_240 - Aquifex aeol... 257 2e-67 emb|CAB90929.1| (AL355774) putative regulatory protein [Streptom... 256 3e-67 pir||E70792 probable regulatory protein - Mycobacterium tubercul... 256 3e-67 pir||G82635 methanol dehydrogenase regulatory protein XF1813 [im... 254 8e-67 pir||F72606 probable methanol dehydrogenase regulator APE1317 - ... 253 2e-66 pir||D72767 hypothetical protein APE0127 - Aeropyrum pernix (str... 252 4e-66 pir||H70121 methanol dehydrogenase regulator (moxR) homolog - Ly... 250 1e-65 pir||H83287 conserved hypothetical protein PA2875 [imported] - P... 250 1e-65 emb|CAB98184.1| (AJ276161) putative regulatory protein [Streptom... 249 3e-65 pir||S74593 MorR protein - Synechocystis sp. (strain PCC 6803) >... 247 1e-64 pir||B75496 moxR protein - Deinococcus radiodurans (strain R1) >... 243 3e-63 pir||B70874 probable moxR protein - Mycobacterium tuberculosis (... 241 1e-62 emb|CAA65298.1| (X96434) moxR [Borrelia burgdorferi] >gi|2689172... 240 1e-62 pir||H82493 MoxR-related protein VCA0175 [imported] - Vibrio cho... 235 6e-61 pir||G83261 conserved hypothetical protein PA3070 [imported] - P... 228 9e-59 pir||S43189 hypothetical protein - Pseudomonas aeruginosa >gi|46... 199 3e-50 gb|AAC46196.1| (AF002133) transcriptional regulator [Mycobacteri... 187 1e-46 gb|AAB91544.1| (AF017119) MoxR homolog [Allochromatium vinosum] 180 2e-44 gb|AAB62561.1| (AF006054) MoxR [Mycobacterium tuberculosis] 174 1e-42 dbj|BAA23276.1| (AB004097) ORF4 [Hyphomicrobium methylovorum] 148 8e-35 sp|P30621|MOXR_METEX MOXR PROTEIN (MXAR PROTEIN) >gi|1771259|emb... 139 5e-32 sp|P29901|MOXR_PARDE MOXR PROTEIN >gi|94691|pir||D41377 methanol... 127 2e-28 >pir||B75012 methanol dehydrogenase regulatory protein (moxr-1) PAB1276 - Pyrococcus abyssi (strain Orsay) >gi|5459050|emb|CAB50536.1| (AJ248288) methanol dehydrogenase regulatory protein (moxR-1) [Pyrococcus abyssi] Length = 317 Score = 629 bits (1604), Expect = e-179 Identities = 317/317 (100%), Positives = 317/317 (100%) Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN Sbjct: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM Sbjct: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME Sbjct: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV Sbjct: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240 Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE Sbjct: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300 Query: 301 IVEEAVNEVPVPKDLEY 317 IVEEAVNEVPVPKDLEY Sbjct: 301 IVEEAVNEVPVPKDLEY 317 >pir||F71139 hypothetical protein PH0329 - Pyrococcus horikoshii >gi|3256720|dbj|BAA29403.1| (AP000002) 317aa long hypothetical protein [Pyrococcus horikoshii] Length = 317 Score = 520 bits (1325), Expect = e-147 Identities = 242/317 (76%), Positives = 287/317 (90%) Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 M ++++I +IG++FIG +V+RKV A ALVNGN+LFED+PGLGKTLLAKAFAK+LGL Sbjct: 1 MRGEVKKIIEAIGDIFIGHEDVIRKVLAVALVNGNILFEDYPGLGKTLLAKAFAKILGLK 60 Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 ++RIQFTPDLLPADIIGTKVW+PEKG FE++KGPIFTN+LLADEINRAPPKTQSALLEAM Sbjct: 61 FKRIQFTPDLLPADIIGTKVWKPEKGAFEVVKGPIFTNILLADEINRAPPKTQSALLEAM 120 Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 EERQVTIEGETF+LE+PFF+IATQNPLE EGTYPLPEAQLDRFLVRL++GYP +E++E+E Sbjct: 121 EERQVTIEGETFKLERPFFIIATQNPLELEGTYPLPEAQLDRFLVRLNIGYPRNEEDELE 180 Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240 ILKARLRWGKDDPT D+ P++S+E+F+ MQ VE V +HDDILRYIVR+VRRIREDER+ Sbjct: 181 ILKARLRWGKDDPTSDISPIISREDFIRMQEEVERGVIIHDDILRYIVRLVRRIREDERI 240 Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300 EAGPSPRG LALMKL+KANAFIEGR +VIPDDVK F ++AL+HRIVLKPEYSLERG+ E Sbjct: 241 EAGPSPRGGLALMKLAKANAFIEGRSYVIPDDVKYFAVEALAHRIVLKPEYSLERGIAEE 300 Query: 301 IVEEAVNEVPVPKDLEY 317 I+ E + EVPVPKD+ Y Sbjct: 301 IIREVLEEVPVPKDIRY 317 >gi|11500001 methanol dehydrogenase regulatory protein (moxR) [Archaeoglobus fulgidus] >gi|7428883|pir||B69553 methanol dehydrogenase regulatory protein (moxR) homolog - Archaeoglobus fulgidus >gi|2650675|gb|AAB91247.1| (AE001108) methanol dehydrogenase regulatory protein (moxR) [Archaeoglobus fulgidus] Length = 324 Score = 391 bits (994), Expect = e-108 Identities = 190/306 (62%), Positives = 244/306 (79%), Gaps = 3/306 (0%) Query: 8 VINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFT 67 ++ ++ +V++G +V K+ AAAL NGN+LFED+PGLGKTLLAK FA+V+G +YRR+QFT Sbjct: 16 IVKAVCDVYVGDKNLVEKMLAAALTNGNILFEDYPGLGKTLLAKVFARVIGADYRRVQFT 75 Query: 68 PDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTI 127 PDLLP+DIIG K+WR ++ FE +KGPIFTNVLLADEINR+PPKTQ+ALLEAMEE+Q+T+ Sbjct: 76 PDLLPSDIIGVKIWRGDR--FEFVKGPIFTNVLLADEINRSPPKTQAALLEAMEEKQITV 133 Query: 128 EGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLR 187 EGETF L PFFV+ATQNP+E EGTYPLPEAQ+DRF++R+ GYP S +EEMEIL+ R+ Sbjct: 134 EGETFSLSMPFFVLATQNPIEQEGTYPLPEAQMDRFMLRMRPGYPESIEEEMEILRRRIS 193 Query: 188 WGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPR 247 W KDDPT D++PV+S E F +Q VE V V IL+YI +VR RE E VE G SPR Sbjct: 194 WRKDDPTEDVEPVVSLETFRRIQDAVE-AVYVDKSILKYISELVRATREHELVELGSSPR 252 Query: 248 GALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVN 307 G LAL+KL++A A ++GRDFVIPDDVK ++AL+HR++LK EY++E E+VEE +N Sbjct: 253 GGLALLKLARALAVMDGRDFVIPDDVKRVAVEALAHRVILKFEYAVEGLRAEEVVEEILN 312 Query: 308 EVPVPK 313 V VPK Sbjct: 313 SVRVPK 318 >pir||C75037 methanol dehydrogenase regulatory protein (moxr-3) PAB0848 - Pyrococcus abyssi (strain Orsay) >gi|5458705|emb|CAB50192.1| (AJ248287) methanol dehydrogenase regulatory protein (moxR-3) [Pyrococcus abyssi] Length = 314 Score = 354 bits (900), Expect = 6e-97 Identities = 184/311 (59%), Positives = 237/311 (76%), Gaps = 5/311 (1%) Query: 4 RIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRR 63 + ++V+ + + +GK V++ + A+ L +G++L ED PGL KTL+AK+FAK LGL +RR Sbjct: 6 KAQKVLEEVKKAIVGKDNVLKLMLASMLADGHILIEDLPGLAKTLMAKSFAKALGLEFRR 65 Query: 64 IQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEER 123 +QFTPDLLP+DI+G V+ + FE KGP+FTN+LLADEINRAPPKTQSALLEAM+ER Sbjct: 66 VQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAMQER 125 Query: 124 QVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILK 183 QVTIEG T++L +PF VIATQNP+E EGTYPLPEAQLDRFLVRL VGYP S++EE EILK Sbjct: 126 QVTIEGNTYQLPRPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRVGYP-SKEEEKEILK 184 Query: 184 ARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER-VEA 242 R+ DD V++ VLS E+ L MQR +E EV V D I+ YI +V RED+R +E Sbjct: 185 RRIERKMDD--VEINTVLSPEDILRMQREIE-EVYVSDAIIEYITSLVWATREDKREIEV 241 Query: 243 GPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIV 302 G SPRG+LAL+KLS+A A IEGRD+VIPDDVKA + ALSHRI+LK E R + +I+ Sbjct: 242 GVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAVPALSHRIILKRELWYMRIRQEDII 301 Query: 303 EEAVNEVPVPK 313 ++ + +VPVPK Sbjct: 302 KKILEKVPVPK 312 >pir||B71126 hypothetical protein PH0776 - Pyrococcus horikoshii >gi|3257185|dbj|BAA29868.1| (AP000003) 314aa long hypothetical protein [Pyrococcus horikoshii] Length = 314 Score = 351 bits (892), Expect = 5e-96 Identities = 183/314 (58%), Positives = 238/314 (75%), Gaps = 5/314 (1%) Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 + ++ + VI + + +GK V++ V A L +G++L ED PGL KTL+AK+FAK LGL Sbjct: 3 VQKKAQMVIEEVKKAIVGKDNVLKLVLATILADGHILIEDLPGLAKTLMAKSFAKALGLE 62 Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 ++R+QFTPDLLP+DI+G V+ + FE KGP+FTN+LLADEINRAPPKTQSALLEAM Sbjct: 63 FKRVQFTPDLLPSDILGVNVFNQKTLEFEFKKGPVFTNILLADEINRAPPKTQSALLEAM 122 Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 +ERQVTIEG T++L +PF VIATQNP+E EGTYPLPEAQLDRFLVRL +GYP S+DEE E Sbjct: 123 QERQVTIEGVTYKLPKPFIVIATQNPIEQEGTYPLPEAQLDRFLVRLRMGYP-SKDEEKE 181 Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER- 239 IL+ R+ +D+ V+++ VLS ++ L+MQR VE +V V D I+ YI +V RED+R Sbjct: 182 ILRRRIERKQDE--VEIETVLSPKDVLKMQREVE-DVYVSDAIIEYITSLVWATREDKRD 238 Query: 240 VEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLER 299 +E G SPRG+LAL+KLS+A A IEGRD+VIPDDVKA I ALSHRI+LK E R + Sbjct: 239 IEIGVSPRGSLALLKLSRAYAAIEGRDYVIPDDVKAVAIPALSHRIILKRELWYTRVSQE 298 Query: 300 EIVEEAVNEVPVPK 313 ++E+ + VPVPK Sbjct: 299 SVIEKILERVPVPK 312 >pir||B70947 probable moxR3 protein - Mycobacterium tuberculosis (strain H37RV) >gi|2827574|emb|CAA16629.1| (AL021646) moxR3 [Mycobacterium tuberculosis] Length = 320 Score = 304 bits (770), Expect = 1e-81 Identities = 154/308 (50%), Positives = 212/308 (68%), Gaps = 4/308 (1%) Query: 6 EEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQ 65 E V++ I V +GK + + A L G+VL ED PGLGKTL+A++FA LGL++ R+Q Sbjct: 13 EAVLDEIERVVVGKRSALTLILTAVLARGHVLIEDLPGLGKTLIARSFAAALGLDFTRVQ 72 Query: 66 FTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQV 125 FTPDLLPAD++G+ ++ + G FE GPIFTN+LLADEINR PPKTQ+ALLEAM E QV Sbjct: 73 FTPDLLPADLLGSTIYDMQSGRFEFRAGPIFTNLLLADEINRTPPKTQAALLEAMAEGQV 132 Query: 126 TIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKAR 185 +I+G+T +L PF V+AT NP+E+EGTYPLPEAQLDRF +RL + Y SE +E +L+ R Sbjct: 133 SIDGQTHKLAMPFIVLATDNPIEYEGTYPLPEAQLDRFAIRLELRYL-SERDETSMLRRR 191 Query: 186 LRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPS 245 L G DPTV+ V+ + L M+ VE +V VH+D+L Y+V + R +V G S Sbjct: 192 LERGSADPTVN--QVVDCHDLLAMRESVE-QVTVHEDVLHYVVSLANATRHHPQVAVGAS 248 Query: 246 PRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEA 305 PR L L++LS+A A + GRD+VIP+DVK A++HRI L+PE + + ++V E Sbjct: 249 PRAELDLVQLSRARALLLGRDYVIPEDVKELATAAVAHRITLRPEMWVRKIAGADVVSEL 308 Query: 306 VNEVPVPK 313 + +PVP+ Sbjct: 309 LRRLPVPR 316 >dbj|BAB04323.1| (AP001509) methanol dehydrogenase regulatory protein [Bacillus halodurans] Length = 318 Score = 303 bits (767), Expect = 2e-81 Identities = 153/310 (49%), Positives = 212/310 (68%), Gaps = 5/310 (1%) Query: 3 ERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYR 62 +RI VI ++ V +GK + + A +G+VL ED PG+GKT+L KA A+ LG +++ Sbjct: 6 QRIARVIENVERVVVGKRQEIELSLVALFASGHVLLEDVPGVGKTMLVKAIARSLGADFK 65 Query: 63 RIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEE 122 RIQFTPDLLP+D+ G ++ + FE GPI NV+LADEINR PKTQSALLEA+EE Sbjct: 66 RIQFTPDLLPSDVTGVSIYNQKTQQFEFRPGPIMANVVLADEINRTSPKTQSALLEALEE 125 Query: 123 RQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEIL 182 VTIEG++ L +PFFV+ATQNP+E+ GTYPLPEAQLDRFL RL +GYP DEE+++L Sbjct: 126 GSVTIEGKSLVLSKPFFVMATQNPVEYAGTYPLPEAQLDRFLFRLQLGYP-KPDEELDVL 184 Query: 183 KARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEA 242 K R K P +L PV+ EE +++Q ++ +V V D++ YIV IV R+ ++VE Sbjct: 185 K---RLEKKHPIQELSPVMETEEVIQLQEEIK-DVFVEDNVKAYIVEIVNLTRKHQKVEL 240 Query: 243 GPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIV 302 G SPRG++A+MK ++A A I+GRD+VIPDD+K ALSHR++L E + EI+ Sbjct: 241 GVSPRGSIAMMKAAQAYAMIQGRDYVIPDDIKTLAPFALSHRLILTAEAKMSGTDHEEII 300 Query: 303 EEAVNEVPVP 312 + + + VP Sbjct: 301 HDVLQQAKVP 310 >pir||H72289 hypothetical protein TM1132 - Thermotoga maritima (strain MSB8) >gi|4981679|gb|AAD36208.1|AE001771_1 (AE001771) moxR protein, putative [Thermotoga maritima] Length = 305 Score = 297 bits (753), Expect = 1e-79 Identities = 155/309 (50%), Positives = 216/309 (69%), Gaps = 5/309 (1%) Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64 IE VIN+I +V GK E + V AA L G+VL ED PG+GKT+LA+A A LG+++RR+ Sbjct: 2 IERVINNIEKVIKGKREAIEVVVAALLAKGHVLMEDVPGVGKTMLARALALSLGVDFRRV 61 Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124 QFTPDLLP D+ G ++ +K F KGP+FT+VLLADEINRA P+TQSALLEAM E Q Sbjct: 62 QFTPDLLPTDLTGLYIYDRKKEDFVFKKGPVFTDVLLADEINRATPRTQSALLEAMAEGQ 121 Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184 VT++G T RL + FFVIATQNP+E+EGT+PLPEAQLDRF++ + +GYP E+ E+++L + Sbjct: 122 VTVDGVTHRLSERFFVIATQNPIEYEGTFPLPEAQLDRFMICVKMGYP-DEEAEIQMLTS 180 Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244 + K+ P L+PV++ +E E+Q++V + V V D++ +YIV I R + G Sbjct: 181 Q---EKEHPISQLEPVMNPDELSELQKKVRN-VFVSDEVKKYIVDIASATRNHPSLLLGM 236 Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEE 304 SPRG++ALM S A AF++GRDF +PDDVK + + HR++ E L+R + +IV E Sbjct: 237 SPRGSIALMHFSMALAFMDGRDFTLPDDVKRAAVYVIPHRVIQSAESKLKREKKEDIVRE 296 Query: 305 AVNEVPVPK 313 ++ V V K Sbjct: 297 ILDRVKVVK 305 >pir||G71146 hypothetical protein PH0385 - Pyrococcus horikoshii >gi|3256777|dbj|BAA29460.1| (AP000002) 312aa long hypothetical protein [Pyrococcus horikoshii] Length = 312 Score = 293 bits (743), Expect = 1e-78 Identities = 150/301 (49%), Positives = 210/301 (68%), Gaps = 6/301 (1%) Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71 + + +GK +V+ + A L G+V+ E PG+ KT +AK+FA+VLGL + RIQ TPDLL Sbjct: 17 VHKAVVGKDDVIELLAIALLAEGHVMIEGVPGVAKTTIAKSFAQVLGLKFSRIQLTPDLL 76 Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131 PADI+GT + G+++I KGPIF NV+LADEINRA PKTQSALLEAM+ERQVTIEG T Sbjct: 77 PADILGTVYYDQSDGLWKIKKGPIFANVVLADEINRAQPKTQSALLEAMQERQVTIEGRT 136 Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191 F LE+PF VIAT+NP+EFEG Y LPEAQ+DRF++ + +GYP + +EE+E+L+ + R Sbjct: 137 FPLEKPFMVIATKNPIEFEGVYNLPEAQVDRFMLNIKIGYP-TREEEVEMLRKKDR---- 191 Query: 192 DPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALA 251 ++ + S+E+ + M V+ VK +++L Y+ IV R+DER+ G SPR + Sbjct: 192 GELGEVGRIFSREQIVRMINEVK-RVKTSEEVLHYLYEIVNETRKDERLIVGASPRASEH 250 Query: 252 LMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPV 311 L+ SKA AF+EGRD+VIPDDVK + L+HR+++K E+ +E +IV E + V V Sbjct: 251 LLYASKAKAFLEGRDYVIPDDVKFLAVPVLAHRLLIKAEHEIEGIKGEDIVREILERVEV 310 Query: 312 P 312 P Sbjct: 311 P 311 >pir||D75008 methanol dehydrogenase regulatory protein (moxr-2) PAB1296 - Pyrococcus abyssi (strain Orsay) >gi|5459020|emb|CAB50506.1| (AJ248288) methanol dehydrogenase regulatory protein (moxR-2) [Pyrococcus abyssi] Length = 309 Score = 293 bits (743), Expect = 1e-78 Identities = 153/302 (50%), Positives = 211/302 (69%), Gaps = 8/302 (2%) Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71 I + +GK +V+ + A L G+V+ E PG+ KT +AK FA+ LGL + RIQ TPDL Sbjct: 14 IHKAVVGKDDVIELLAIALLSEGHVIIEGIPGVAKTTIAKNFAQALGLKFSRIQLTPDLF 73 Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131 PADIIGT + G ++I KGPIF NV+LADEINRA PKTQSALLEAM+ERQVTIEG T Sbjct: 74 PADIIGTVYYDQLDGNWKIKKGPIFANVILADEINRAQPKTQSALLEAMQERQVTIEGRT 133 Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191 ++LE+PF +IAT+NPLEFEG Y LPEAQLDRF++++ VGYP S++EE+E+LK KD Sbjct: 134 YKLERPFLLIATKNPLEFEGVYNLPEAQLDRFMLQIKVGYP-SKEEELEMLKR-----KD 187 Query: 192 DPTV-DLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGAL 250 + K V S+++ ++M + V++ D++L Y+ I+ R D+R+ G SPR A Sbjct: 188 KGLFSEAKRVFSRDQIIKM-IELARRVRISDEVLEYLYEIINLTRVDKRLLVGASPRAAE 246 Query: 251 ALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVP 310 L+ SKA AF+EGRD+VIPDD+K+ + L+HR+++K EY +E +V E +N+V Sbjct: 247 HLLYASKAKAFLEGRDYVIPDDIKSLAVPVLAHRLLVKAEYEVEGITGERVVREILNKVE 306 Query: 311 VP 312 VP Sbjct: 307 VP 308 >pir||C69791 methanol dehydrogenase regulation homolog yeaC - Bacillus subtilis >gi|1708641|gb|AAB62308.1| (U51115) YeaC [Bacillus subtilis] >gi|2632946|emb|CAB12452.1| (Z99107) similar to methanol dehydrogenase regulation [Bacillus subtilis] Length = 320 Score = 290 bits (734), Expect = 2e-77 Identities = 149/301 (49%), Positives = 206/301 (67%), Gaps = 5/301 (1%) Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71 I V +GK ++ AA L G+VL ED PG+GKT++ +A AK +G +++RIQFTPDLL Sbjct: 18 INRVMVGKRDIAILSLAALLAKGHVLLEDVPGVGKTMMVRALAKSIGADFKRIQFTPDLL 77 Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131 P+D+ G ++ + FE GPI N++LADEINR PKTQSALLEAMEE VT++G T Sbjct: 78 PSDVTGVSIYNAKTMEFEYRPGPIMGNIVLADEINRTSPKTQSALLEAMEEGSVTVDGHT 137 Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191 +L PFFV+ATQNP+E+EGTYPLPEAQLDRFL +L +GYP S +EE+++L + K Sbjct: 138 MQLADPFFVMATQNPVEYEGTYPLPEAQLDRFLFKLRMGYP-SFNEELDVLSLQ---EKS 193 Query: 192 DPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALA 251 P L+PV++KE+F+ +QR V++ V+ D I YIV IV++ R+ V+ G SPRG++A Sbjct: 194 HPIETLEPVIAKEDFIFLQREVQN-VRADDSIKEYIVEIVQKTRQHPSVQLGVSPRGSIA 252 Query: 252 LMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPV 311 LMK ++A A + RD+VIPDD++ L HR++L PE E IV E ++ V V Sbjct: 253 LMKAAQAYALLHHRDYVIPDDIQYLAPFTLPHRMMLHPEAKFEGIQAEAIVREIMSAVKV 312 Query: 312 P 312 P Sbjct: 313 P 313 >dbj|BAB04450.1| (AP001509) unknown conserved protein [Bacillus halodurans] Length = 308 Score = 288 bits (730), Expect = 5e-77 Identities = 139/310 (44%), Positives = 215/310 (68%), Gaps = 3/310 (0%) Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64 +++++ + +V IG+ + +R + A L G+VL E PG+GKT + + A + +++R+ Sbjct: 1 MQQLLQQMDQVIIGQQKNIRLLLTAFLAGGHVLLEGVPGIGKTKMVRELADLTDGDFKRV 60 Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124 QFTPD++P+D+ G ++ + F+++KGP+FTN+LLADEINR PP+TQ+ALLEAMEERQ Sbjct: 61 QFTPDMMPSDVTGNVIFNSKDNDFQMVKGPVFTNLLLADEINRTPPRTQAALLEAMEERQ 120 Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184 VTI+GET++L PFFV+ATQNP+E+EGTYPLPEAQLDRFL +L V YP S + E++I+K Sbjct: 121 VTIQGETYQLPDPFFVVATQNPIEYEGTYPLPEAQLDRFLFKLEVTYP-SLEAELQIVKG 179 Query: 185 RLRWGKDDPT-VDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAG 243 + + + D + S E +++++++ +V V D ++ Y+V I+R+ RED+RV G Sbjct: 180 HVPFFVEQGNETDGRSAFSLTELRKLRQQLQ-QVVVEDSLMEYMVTIIRKTREDQRVMNG 238 Query: 244 PSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVE 303 SPR +ALM ++A A ++GR FV PDD+K + AL HR+ L P+ LE ++ Sbjct: 239 ASPRAGIALMMAARAWALLDGRQFVTPDDIKTITVPALRHRLQLTPQVELEGETSDHFIQ 298 Query: 304 EAVNEVPVPK 313 E + VPVP+ Sbjct: 299 ETLASVPVPR 308 >gb|AAG18829.1| (AE004987) methanol dehydrogenase regulatory protein; MoxR [Halobacterium sp. NRC-1] Length = 318 Score = 288 bits (730), Expect = 5e-77 Identities = 149/305 (48%), Positives = 198/305 (64%), Gaps = 4/305 (1%) Query: 8 VINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFT 67 V++ + I E + V L +G+VL ED PG GKTL A++ A LGL + R+QFT Sbjct: 13 VVDEVAAAVIADREFLETVLVGFLADGHVLLEDVPGTGKTLTARSVATALGLEFSRVQFT 72 Query: 68 PDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTI 127 PDLLP D++GT V+ FE GP+F NV+LADEINRAPPKTQ+ALLEAMEE QVTI Sbjct: 73 PDLLPTDVLGTHVFNERSREFEFRPGPVFANVVLADEINRAPPKTQAALLEAMEEGQVTI 132 Query: 128 EGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLR 187 +GET L +PFFVIATQNP++ EGT+PLPEAQLDRF+V ++GYP + E E+L R Sbjct: 133 DGETMALPEPFFVIATQNPVDQEGTFPLPEAQLDRFVVSAAIGYPDAAGER-ELLARRAS 191 Query: 188 WGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPR 247 PTVD + +E + RR +V+V D+ Y+V + R RE RVE G SPR Sbjct: 192 RDARSPTVD---AVLDDERVRALRRASEDVRVGSDLREYMVAVARATREHPRVEVGVSPR 248 Query: 248 GALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVN 307 G L + ++A A + GR++V+P DVK L+HR+VL P+ ++E + IVE ++ Sbjct: 249 GTQRLFEAARARAVVAGREYVVPADVKGLAGSVLAHRLVLTPDAAVENVAKGGIVEGVLD 308 Query: 308 EVPVP 312 EVPVP Sbjct: 309 EVPVP 313 >pir||D75460 MoxR-related protein - Deinococcus radiodurans (strain R1) >gi|6458637|gb|AAF10492.1|AE001944_3 (AE001944) MoxR-related protein [Deinococcus radiodurans] Length = 354 Score = 286 bits (724), Expect = 2e-76 Identities = 157/306 (51%), Positives = 207/306 (67%), Gaps = 5/306 (1%) Query: 7 EVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQF 66 E+I ++ V +GK +V R AA L G+VL ED PG GKT+LA+A A LGL++RR+QF Sbjct: 23 EIIANVARVLVGKEDVTRLALAAILAGGHVLLEDAPGTGKTVLARALAASLGLDFRRVQF 82 Query: 67 TPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVT 126 TPDLLP+D+ G V+RP G FE + GPIFT +LLADEINRA PKTQSALLEAM E QV+ Sbjct: 83 TPDLLPSDVTGVSVFRPATGTFEFVPGPIFTGILLADEINRATPKTQSALLEAMGEGQVS 142 Query: 127 IEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARL 186 G T RL QPF VIATQNP+E EGTY LPEAQLDRFL+RLSVGYP S ++E+E+L ARL Sbjct: 143 ESGVTHRLPQPFVVIATQNPVEHEGTYRLPEAQLDRFLLRLSVGYP-SLEQEVEML-ARL 200 Query: 187 RWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSP 246 + + P DL+ V + + L Q +V+ +V V D+ RY+ + R R+ +V G P Sbjct: 201 Q--ERHPLQDLRAVAAPADLLAAQAQVQ-QVTVSSDVRRYLAALAARSRQHPQVTLGGGP 257 Query: 247 RGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAV 306 R +LAL +++A A+ +GR FV PDDV+ L+HR+ L E ++ ++V E + Sbjct: 258 RASLALQGVAQALAWTQGRTFVTPDDVQQAAPGVLAHRLSLGIEARMQGLSAADVVREVL 317 Query: 307 NEVPVP 312 PVP Sbjct: 318 AAEPVP 323 >pir||T35917 probable regulatory protein - Streptomyces coelicolor >gi|4160330|emb|CAA22801.1| (AL035212) putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 332 Score = 285 bits (722), Expect = 4e-76 Identities = 146/312 (46%), Positives = 208/312 (65%), Gaps = 4/312 (1%) Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 + E+ V+ IG +GK + + V A L G+VL ED PGLGKTLLA++FA LGL+ Sbjct: 15 VGEQAGAVLREIGRAVVGKPDALEHVMLAVLAGGHVLVEDLPGLGKTLLARSFATTLGLD 74 Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 +RRIQFTPDLLP+D+ GT ++ G GP+FT++LLADEINR PPKTQ+ALLEAM Sbjct: 75 FRRIQFTPDLLPSDVTGTPLYDQRSGEMVFHPGPVFTHLLLADEINRTPPKTQAALLEAM 134 Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 E QVT++GET L PF VIAT NP+E+EGTY LPEAQLDRF +R+ +GY + EE+ Sbjct: 135 AESQVTVDGETRPLADPFLVIATANPVEYEGTYSLPEAQLDRFQLRVRMGYLAAR-EELA 193 Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240 +L+AR+ + P L+ + ++ + R V V++ DD+L Y V +V R+ ++ Sbjct: 194 MLRARI--DRAAPEAVLERLAGPDDVVAW-RAVVERVEIDDDLLEYAVALVGATRDHPQI 250 Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300 G SPRG LAL++L++A A ++GRD+V+P+DVK + AL+HR+ L+PE + + Sbjct: 251 SIGASPRGGLALVQLARARAVLDGRDYVVPEDVKGLAVPALAHRVSLRPELWVREMSTDD 310 Query: 301 IVEEAVNEVPVP 312 ++ E V+ V P Sbjct: 311 VLREIVDSVGTP 322 >pir||T34964 probable regulatory protein - Streptomyces coelicolor >gi|5689966|emb|CAB52003.1| (AL109663) putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 337 Score = 277 bits (702), Expect = 9e-74 Identities = 144/310 (46%), Positives = 198/310 (63%), Gaps = 5/310 (1%) Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64 +E V S+ +V GK EVVR L G++L ED PG+GKT+LAKA A+ + + RRI Sbjct: 9 VERVRGSVEDVIEGKPEVVRLSLTVLLAEGHLLIEDVPGVGKTMLAKALARSIDCSVRRI 68 Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124 QFTPDLLP+DI G +W ++ FE G IF V++ DEINRA PKTQSALLE+MEERQ Sbjct: 69 QFTPDLLPSDITGVSIWDQQRRDFEFKPGAIFAQVVIGDEINRASPKTQSALLESMEERQ 128 Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184 VTI+G+T+ L PF V+ATQNP+E EGTYPLPEAQ DRF+ R+S+GYP S + E+++L Sbjct: 129 VTIDGQTYELPSPFMVVATQNPVEMEGTYPLPEAQRDRFMARVSIGYP-SPEAELQMLDV 187 Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244 G P DL+PV + L++ V V V D + RY V +V R + G Sbjct: 188 H---GGASPLDDLQPVAHAHDILKLIEAV-RGVHVADPVRRYAVDLVAATRTHPDLRLGA 243 Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEE 304 SPR L L++ +KA+A + GRD+ +PDDV+A + L+HR++ + L R ++V+E Sbjct: 244 SPRATLHLLRAAKASAALSGRDYALPDDVQALAVAVLAHRLLPTAQAQLNRRTAEQVVQE 303 Query: 305 AVNEVPVPKD 314 + VP + Sbjct: 304 ILQRTAVPAE 313 >pir||S75782 methanol dehydrogenase regulatory protein - Synechocystis sp. (strain PCC 6803) >gi|1001272|dbj|BAA10517.1| (D64003) MoxR [Synechocystis sp.] Length = 303 Score = 277 bits (701), Expect = 1e-73 Identities = 142/286 (49%), Positives = 198/286 (68%), Gaps = 3/286 (1%) Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 M E+I + ++ + +GK E +R V A L G+ L ED PG+GKTLLAK+ A+ + Sbjct: 1 MREQISVLTQNLSQTIVGKDEAIRLVLVALLSGGHALLEDVPGVGKTLLAKSLARSINGK 60 Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 ++R+Q TPDLLP DI GT +W P FE + GP F N+LLADEINRA P+TQ+ALLE M Sbjct: 61 FQRVQCTPDLLPTDITGTNIWNPSSREFEFLPGPAFANILLADEINRATPRTQAALLEVM 120 Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 EE+QVT++GET + PFFVIATQNP+E++GT+PLPEAQLDRF + LS+GYP SE EE++ Sbjct: 121 EEKQVTVDGETRLVPHPFFVIATQNPIEYQGTFPLPEAQLDRFALSLSLGYP-SEAEELK 179 Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240 +L+ R + + DL+ +S EE +Q+ V +VK+ +D+ +Y++R+VR R DE V Sbjct: 180 MLQ-RQQNPEAIAVGDLESCISLEEVEALQKAV-RQVKLTEDLQQYLLRLVRASRTDEDV 237 Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIV 286 G SPRG AL + ++A AF+E RD+ I DDVK L+HR++ Sbjct: 238 TLGVSPRGTTALQRATQAFAFLEERDYAIDDDVKFVAPHVLAHRLI 283 >emb|CAC12049.1| (AL445065) regulatory protein moxR related protein [Thermoplasma acidophilum] Length = 319 Score = 274 bits (694), Expect = 8e-73 Identities = 147/318 (46%), Positives = 210/318 (65%), Gaps = 13/318 (4%) Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 + + + SIG+ IG +VR +F A L ++L E PGL KT+LA FA+ + Sbjct: 10 LRNTVISIEESIGKRVIGSRRIVRFMFIALLTGNHILMEGVPGLAKTMLANEFARHTRMK 69 Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 +RRIQFTPD+LP+D+ GT ++ E E +GPIF NV+LADEINR PPK QSALLEAM Sbjct: 70 FRRIQFTPDMLPSDVTGTIMFNIESRKMEFKEGPIFANVILADEINRTPPKVQSALLEAM 129 Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 EE QVTI GET L +PFFVIATQNP+E EGT+PL EA +DRFL R + YP ED E+ Sbjct: 130 EETQVTIGGETHSLPKPFFVIATQNPIEQEGTFPLAEALMDRFLFRYYLEYPSRED-ELN 188 Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240 IL + ++ DDP++ L P +E +E + +V++ V + ++I +Y+V ++RR RE++ V Sbjct: 189 ILNSIGKY--DDPSLVLMP----DEIIEFRSQVDN-VYISEEIKQYLVDLMRRTRENDLV 241 Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLE-----R 295 G SPR MK ++ANA I GR +VIP+D+ + L+HR++LKPE ++ + Sbjct: 242 YLGASPRTTAKYMKAARANALISGRSYVIPEDITFMAFEILNHRLILKPEAIMDETDDPK 301 Query: 296 GLEREIVEEAVNEVPVPK 313 + + I++ ++EVPVPK Sbjct: 302 LIVKRIIDRVLSEVPVPK 319 >pir||C83106 conserved hypothetical protein PA4322 [imported] - Pseudomonas aeruginosa (strain PAO1) >gi|9950546|gb|AAG07710.1|AE004848_9 (AE004848) conserved hypothetical protein [Pseudomonas aeruginosa] Length = 335 Score = 261 bits (661), Expect = 6e-69 Identities = 131/302 (43%), Positives = 197/302 (64%), Gaps = 4/302 (1%) Query: 14 EVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPA 73 + IG+ V+ V A L G+VL E PGLGKTLL +A A+ + RIQFTPDL+P+ Sbjct: 35 KALIGQGAVIDDVLTALLAGGHVLVEGVPGLGKTLLVRALARCFDGGFARIQFTPDLMPS 94 Query: 74 DIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFR 133 D+ G V+ F++ KGP+FT++LLADEINRAP KTQ+ALLE M+ERQVT+EG Sbjct: 95 DVTGHAVYDLASEQFKLRKGPVFTHLLLADEINRAPAKTQAALLEVMQERQVTLEGRALP 154 Query: 134 LEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDD- 192 + QPF V+ATQNP+E EGTYPLPEA+LDRF+++L + YP +E EE +++ R + D Sbjct: 155 VPQPFMVLATQNPIEQEGTYPLPEAELDRFMLKLRIDYP-AEAEEQTLVRQVTRSARSDM 213 Query: 193 -PTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALA 251 +L+P+L ++ L +Q R+ ++ + D +L Y VR+ R R + G PR ++A Sbjct: 214 LDVANLRPLLKDKDVLALQ-RIASDLPIDDQVLDYAVRLARTTRNWPGLALGAGPRASIA 272 Query: 252 LMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPV 311 L++ +A A + G +FV+PDD+K + L HR+ L PE +E +++++ +++VP Sbjct: 273 LVRCGRARALLRGGEFVVPDDIKGCALAVLRHRVRLSPELDIEGLSVDQVLQQLLDQVPA 332 Query: 312 PK 313 P+ Sbjct: 333 PR 334 >pir||H70321 conserved hypothetical protein aq_240 - Aquifex aeolicus >gi|2982960|gb|AAC06575.1| (AE000680) hypothetical protein [Aquifex aeolicus] Length = 300 Score = 257 bits (649), Expect = 2e-67 Identities = 138/308 (44%), Positives = 197/308 (63%), Gaps = 10/308 (3%) Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64 I +I+ + +V GK EV++ L G++L ED PG GKT LA A A+VLGL++ RI Sbjct: 3 INLIISEVSKVIKGKEEVIKNSLVCLLSGGHLLIEDVPGTGKTTLALALARVLGLSFSRI 62 Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124 QFT DLLP+DI G V+ + FE KGPIF+NV+LADEINR PK QSALLEAM E+Q Sbjct: 63 QFTSDLLPSDITGVSVFNQKTREFEFKKGPIFSNVVLADEINRGTPKVQSALLEAMAEKQ 122 Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184 V+++G T++L +PFFVIATQNP+E+ GTYPLPEAQLDRF +++S+GYP SE++E++I++ Sbjct: 123 VSVDGNTYKLPEPFFVIATQNPIEYYGTYPLPEAQLDRFTMKISMGYP-SEEDEVQIVQG 181 Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244 + L + S EE + V+ E+ V ++ R+IV I +R V G Sbjct: 182 ---INPMEKVSSLNVLSSPEEVIRTVNEVK-EIYVSPEVARFIVNIGNEVRNHPSVILGV 237 Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEE 304 S RG + L S+A A+ RDFV+P+DV + + HRI ++ E +++E Sbjct: 238 STRGLIHLANASRALAYFRERDFVVPEDVLDLLKYVIPHRIKVREGVKAE-----AVLKE 292 Query: 305 AVNEVPVP 312 ++ VP+P Sbjct: 293 VISRVPIP 300 >emb|CAB90929.1| (AL355774) putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 329 Score = 256 bits (647), Expect = 3e-67 Identities = 137/310 (44%), Positives = 191/310 (61%), Gaps = 2/310 (0%) Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64 +E + I + +G+ V + A L G+VL E PG+ KTLL + A L+ +R+ Sbjct: 21 LEALRAEIAKAVVGQDAAVTGLVVALLCRGHVLLEGVPGVAKTLLVRTLAAATELDTKRV 80 Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124 QFTPDL+P+D+ G+ V+ F GP+FTN+LLADEINR PPKTQS+LLEAMEERQ Sbjct: 81 QFTPDLMPSDVTGSLVYDARTTEFSFQPGPVFTNLLLADEINRTPPKTQSSLLEAMEERQ 140 Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184 VT++G L +PF V ATQNP+E+EGTYPLPEAQLDRFL++L+V P +DE + + Sbjct: 141 VTVDGTPRLLPEPFLVAATQNPVEYEGTYPLPEAQLDRFLLKLTVPLPTRQDEIDVLTRH 200 Query: 185 RLRWG-KDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAG 243 + +D ++PV S + LE R + V +I Y+V I R RE + G Sbjct: 201 AAGFNPRDLRAAGVRPVASAAD-LEAARAEAAKTTVSPEITAYVVDICRATRESPSLTLG 259 Query: 244 PSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVE 303 SPRGA AL+ ++A A++ GRD+V PDDVKA + L HR+ L+PE +E ++ Sbjct: 260 VSPRGATALLSTARAWAWLTGRDYVTPDDVKALALPTLRHRVQLRPEAEMEGVTADSVIN 319 Query: 304 EAVNEVPVPK 313 + VPVP+ Sbjct: 320 AILAHVPVPR 329 >pir||E70792 probable regulatory protein - Mycobacterium tuberculosis (strain H37RV) >gi|2960116|emb|CAA18014.1| (AL022121) moxR2 [Mycobacterium tuberculosis] Length = 358 Score = 256 bits (646), Expect = 3e-67 Identities = 136/302 (45%), Positives = 188/302 (62%), Gaps = 2/302 (0%) Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71 + + +G+ V+ + A L G+VL E PG+ KTL+ +A + L L ++R+QFTPDL+ Sbjct: 59 VAKAVVGQDGVISGLVIALLCRGHVLLEGVPGVAKTLIVRAMSAALQLEFKRVQFTPDLM 118 Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131 P D+ G+ V+ F GP+FTN+LLADEINR PPKTQ+ALLEAMEERQV++EGE Sbjct: 119 PGDVTGSLVYDARTAEFVFRPGPVFTNLLLADEINRTPPKTQAALLEAMEERQVSVEGEP 178 Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191 L PF V ATQNP+E+EGTY LPEAQLDRFL++L+V P + D E+ IL Sbjct: 179 KPLPNPFIVAATQNPIEYEGTYQLPEAQLDRFLLKLNVTLP-ARDSEIAILDRHAHGFDP 237 Query: 192 DPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALA 251 + PV E + V H V V +++L YIV IV R ++ G SPRGA A Sbjct: 238 RDLSAINPVAGPAELAAGREAVRH-VLVANEVLGYIVDIVGATRSSPALQLGVSPRGATA 296 Query: 252 LMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPV 311 L+ +++ A++ GRD+V PDDVKA L HR++L+PE LE +++ + VPV Sbjct: 297 LLGTARSWAWLSGRDYVTPDDVKAMARPTLRHRVMLRPEAELEGATPDGVLDGILASVPV 356 Query: 312 PK 313 P+ Sbjct: 357 PR 358 >pir||G82635 methanol dehydrogenase regulatory protein XF1813 [imported] - Xylella fastidiosa (strain 9a5c) >gi|9106890|gb|AAF84619.1|AE004002_9 (AE004002) methanol dehydrogenase regulatory protein [Xylella fastidiosa] Length = 317 Score = 254 bits (643), Expect = 8e-67 Identities = 132/288 (45%), Positives = 187/288 (64%), Gaps = 5/288 (1%) Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64 ++E N + + +GK + VR F A L G++L ED PGLGKT LA A A LGL +RR+ Sbjct: 18 LDEAQNQVNTLLLGKEQEVRLAFVALLSGGHLLLEDLPGLGKTTLAHALASSLGLTFRRV 77 Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124 QFT DLLPAD++G V+ + FE GP+FT+VLLADEINRAPP+TQSALLEAM E+Q Sbjct: 78 QFTSDLLPADVLGISVYNTQTQQFEFHPGPVFTHVLLADEINRAPPRTQSALLEAMAEQQ 137 Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184 VT++G T L PFFVIATQNP++ GT+PLP++QLDRFL+RLS+GYP +E E + Sbjct: 138 VTLDGITRSLSDPFFVIATQNPVDLYGTFPLPDSQLDRFLLRLSLGYPNAEAERTLLSGM 197 Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244 R + P L++ + + + R+ V V D ++ Y+ ++ R R+ V G Sbjct: 198 DRR----ELLTHTLPRLTEADVI-LLRKTVLGVHVSDALIEYVQALLLRSRQQSGVRVGL 252 Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYS 292 SPR +AL++ +KA A + GR+ V+P+D++ + HR+V + E S Sbjct: 253 SPRAGIALLRAAKAYALLSGREHVLPEDIQELFVSVAGHRLVPEAETS 300 >pir||F72606 probable methanol dehydrogenase regulator APE1317 - Aeropyrum pernix (strain K1) >gi|5104994|dbj|BAA80308.1| (AP000061) 306aa long hypothetical methanol dehydrogenase regulator [Aeropyrum pernix] Length = 306 Score = 253 bits (639), Expect = 2e-66 Identities = 139/312 (44%), Positives = 193/312 (61%), Gaps = 6/312 (1%) Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 M + + + +V +GK +R V AA G+VL E PG+ KT +A+A A+ GL Sbjct: 1 MEKVFARISEEVSKVIVGKEREIRLVLAALAARGHVLLEGVPGVAKTTMARAIARATGLR 60 Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 + RIQFTPD+LP+D+IGT V+ G F +GP+F NV+LADE+NRA P+TQSA LEAM Sbjct: 61 FSRIQFTPDMLPSDVIGTMVYDQRTGEFVFRRGPVFANVVLADEVNRANPRTQSAFLEAM 120 Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 +E QVT+ GET RL PF V+AT NP+E EG YPLPEAQLDRF+ R+ VG+P S +E +E Sbjct: 121 QEGQVTVWGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARVVVGHP-SLEELVE 179 Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240 I++ + R + P ++PV E+ + Q V +V V +I YI RIV + V Sbjct: 180 IME-KYRSITEFP---VEPVARPEDIVAAQEAV-WKVHVDKNIKLYIARIVEETHKHPGV 234 Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLERE 300 G SPR AL++M L++ A ++G +V PD VK AL HR++L E LE Sbjct: 235 SLGGSPRAALSIMMLARGLALLDGLGYVTPDHVKEAARAALPHRLILTTEAKLEGLKPES 294 Query: 301 IVEEAVNEVPVP 312 +VE+ ++ V P Sbjct: 295 VVEDVLSSVETP 306 >pir||D72767 hypothetical protein APE0127 - Aeropyrum pernix (strain K1) >gi|5103517|dbj|BAA79038.1| (AP000058) 314aa long hypothetical protein [Aeropyrum pernix] Length = 314 Score = 252 bits (637), Expect = 4e-66 Identities = 139/310 (44%), Positives = 190/310 (60%), Gaps = 9/310 (2%) Query: 3 ERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYR 62 E + V + IGK V+ A + G++L E PG+ KT LAKA A GL + Sbjct: 14 EVLARVKREVARFVIGKEREVKLALATMIAKGHLLVEGVPGVAKTTLAKALAGAFGLRFS 73 Query: 63 RIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEE 122 RIQFTPD LP+D+IGT V+ VF +GP+F NV+LADE+NRA P+TQSA LEAM+E Sbjct: 74 RIQFTPDTLPSDVIGTHVYVGNGFVFR--RGPVFANVVLADEVNRANPRTQSAFLEAMQE 131 Query: 123 RQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEIL 182 QVT+ GET RL PF V+AT NP+E EG YPLPEAQLDRF+ R+ +GYP + EE++I+ Sbjct: 132 GQVTVWGETHRLPSPFIVLATMNPIELEGVYPLPEAQLDRFMARIRLGYP-TRVEEIKII 190 Query: 183 KARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEA 242 + G + ++++P S E+ +Q + V ++ YI IVR R E VE Sbjct: 191 EK----GDEVEDLNVEPAASPEDLKRLQ-DTARRIYVDRKLVEYIADIVRETRRIEEVEI 245 Query: 243 GPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIV 302 G SPR + ++KLS+A A + GRDF PDDVK AL HR+ L+ Y + + +V Sbjct: 246 GASPRAGIHILKLSRALALMSGRDFATPDDVKEAARAALPHRLKLRKVY-ISKHSSEGLV 304 Query: 303 EEAVNEVPVP 312 E+ + +VP P Sbjct: 305 EDVLKKVPPP 314 >pir||H70121 methanol dehydrogenase regulator (moxR) homolog - Lyme disease spirochete >gi|2688061|gb|AAC66559.1| (AE001128) methanol dehydrogenase regulator (moxR) [Borrelia burgdorferi] Length = 337 Score = 250 bits (633), Expect = 1e-65 Identities = 137/304 (45%), Positives = 196/304 (64%), Gaps = 11/304 (3%) Query: 17 IGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPADII 76 +G+ E++ + L +G+VL E PGL KTL + + VL L ++RIQFTPDLLP+D+ Sbjct: 37 LGQKEMIDAILMGLLTDGHVLLEGVPGLAKTLAIQTVSDVLDLEFKRIQFTPDLLPSDLT 96 Query: 77 GTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRLEQ 136 G V++ G F++ KGP+F+NV+LADEINRAP K QSALLEAM ERQVT+ ET RL Sbjct: 97 GNMVYKSATGTFKVRKGPVFSNVILADEINRAPAKVQSALLEAMGERQVTLGDETHRLPD 156 Query: 137 PFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDDPTVD 196 PFFV+ATQNP+E EGTY LPE+QLDRFL++++V YP +D E+ +LK G+ + + Sbjct: 157 PFFVLATQNPIEQEGTYNLPESQLDRFLLKVNVHYPSVQD-EVRLLKIFSVDGRLE-NIK 214 Query: 197 LKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER--------VEAGPSPRG 248 + V++ +++R V VKV D I+ YIV ++ RE ++ +E G SPR Sbjct: 215 VAKVMNAYSLADIKRTV-GRVKVDDKIMLYIVTLISASRERDKKTYPFAKYIEFGASPRA 273 Query: 249 ALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNE 308 +L+L+K ++ NA EGR FV+P+DVKA L HRI E +E +I+ ++ Sbjct: 274 SLSLLKCARVNALYEGRIFVLPEDVKAVAYSVLRHRITPSYEAEVEEMSIDDIIRMLLSA 333 Query: 309 VPVP 312 V +P Sbjct: 334 VALP 337 >pir||H83287 conserved hypothetical protein PA2875 [imported] - Pseudomonas aeruginosa (strain PAO1) >gi|9948964|gb|AAG06263.1|AE004713_12 (AE004713) conserved hypothetical protein [Pseudomonas aeruginosa] Length = 305 Score = 250 bits (633), Expect = 1e-65 Identities = 136/285 (47%), Positives = 182/285 (63%), Gaps = 5/285 (1%) Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 M +E + ++ E+ +GK VR A L G++L ED PG+GKT L+ A A+VLGL+ Sbjct: 1 MLNTLEACLKAVDEILLGKDRQVRLALACLLARGHLLIEDLPGMGKTTLSHALARVLGLS 60 Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 ++RIQFT DLLP DI+GT V+ + G F GPIF ++LADEINRA PK+QSALLEAM Sbjct: 61 FQRIQFTSDLLPGDILGTSVFDKDSGQFVFHPGPIFAELVLADEINRATPKSQSALLEAM 120 Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 EE QVTIEG T L +PFFVIATQNP GT+ LPE+QLDRFL+RLS+GYPG E Sbjct: 121 EEGQVTIEGATRPLPEPFFVIATQNPASQGGTFSLPESQLDRFLMRLSLGYPGRAAERSL 180 Query: 181 ILKARLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERV 240 +L R D L+P+L Q V +++ D ++ Y++R+V R Sbjct: 181 LLGEARR----DLLPRLEPLLDHAALAAFQAEVP-KIRASDALVDYVLRLVEATRTQPAF 235 Query: 241 EAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRI 285 G SPRG+LAL+ ++A A + GRD+VIP+DV+A + HR+ Sbjct: 236 ALGLSPRGSLALLAAARAWALLAGRDYVIPEDVQAVLPAVAGHRL 280 >emb|CAB98184.1| (AJ276161) putative regulatory protein [Streptomyces sparsogenes] Length = 335 Score = 249 bits (630), Expect = 3e-65 Identities = 129/304 (42%), Positives = 186/304 (60%), Gaps = 5/304 (1%) Query: 10 NSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPD 69 ++I V GK + V G++L ED PG GKT LA+ A L ++ R+QFTPD Sbjct: 32 DNIERVVKGKRDTVELALVCLFSEGHLLIEDVPGTGKTTLARCLAASLEADWHRVQFTPD 91 Query: 70 LLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEG 129 LLP+DI G V+R G FE + GP+F N++L DEINRA PKTQSA+LE MEERQVT +G Sbjct: 92 LLPSDITGVTVYRQNTGTFEFLPGPVFANIVLGDEINRASPKTQSAMLEVMEERQVTADG 151 Query: 130 ETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWG 189 T + +PF VIATQN ++ GTYPLPEAQLDRFL+++++GYP D E+ A L Sbjct: 152 STHPVPRPFMVIATQNSVDMGGTYPLPEAQLDRFLMQVTLGYP---DHASEV--AVLSGA 206 Query: 190 KDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGA 249 +++ P ++ + +V +++V + Y+VR+V R V G SPRG+ Sbjct: 207 ASQTSIEQLPTIATGRHIAEFIQVARQIQVAPQLYDYLVRVVAATRSLPEVRLGASPRGS 266 Query: 250 LALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEV 309 +AL++ + A +GR + +P+DVKA L+HR++L PE L +++ EA+ V Sbjct: 267 VALLRAVRVRAASQGRTYALPEDVKALAGPVLAHRLILTPEAELSGRCGADVIAEALATV 326 Query: 310 PVPK 313 PVP+ Sbjct: 327 PVPQ 330 >pir||S74593 MorR protein - Synechocystis sp. (strain PCC 6803) >gi|1651818|dbj|BAA16745.1| (D90900) MorR protein [Synechocystis sp.] Length = 314 Score = 247 bits (625), Expect = 1e-64 Identities = 123/298 (41%), Positives = 195/298 (65%), Gaps = 2/298 (0%) Query: 17 IGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPADII 76 +G+ +++++ A L G+V+ E PG GKTLL K A+ + +RR+Q TPD+LP+D++ Sbjct: 18 VGQPHLIQELLVALLAGGHVIIEGVPGTGKTLLVKLLAQSIQSQFRRVQLTPDMLPSDMV 77 Query: 77 GTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRLEQ 136 G V+ + F + +GP+FT +LLADEINR PPKTQSALLEAMEE+QVT++G T+ L Sbjct: 78 GVNVFDFNQQAFSLKQGPVFTEILLADEINRTPPKTQSALLEAMEEQQVTLDGHTYALPP 137 Query: 137 PFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDDPTVD 196 F+V+ATQNPLEFEGTYPLPEAQLDRFL +L V YP + ++ + + ++ Sbjct: 138 LFWVVATQNPLEFEGTYPLPEAQLDRFLFKLVVDYPPPAAAKQMLVNFQQGFHAQRQDLE 197 Query: 197 -LKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGPSPRGALALMKL 255 L + + EE L +R VE ++ V + +L Y++ +V + R + G SPR +L ++ Sbjct: 198 QLTAIATVEEILASRRSVE-DIAVDEKLLDYLLALVEKTRYHPDILIGASPRASLRWLQA 256 Query: 256 SKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNEVPVPK 313 +KA+A++ G+++++PD++K L HR++L+PE L+ E++ + + PVP+ Sbjct: 257 AKADAWLNGQEYLLPDNLKTVAPPLLRHRLILRPEAQLDGIGIDEVITAILEQTPVPR 314 >pir||B75496 moxR protein - Deinococcus radiodurans (strain R1) >gi|6458321|gb|AAF10200.1|AE001920_3 (AE001920) moxR protein [Deinococcus radiodurans] Length = 320 Score = 243 bits (613), Expect = 3e-63 Identities = 132/308 (42%), Positives = 182/308 (58%), Gaps = 9/308 (2%) Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64 + + + +V +GK +R A L G++L ED PG+GKT LA+A A+ LGL +RR+ Sbjct: 22 MHRALEQLDQVILGKPTQLRLAVACLLARGHLLIEDQPGVGKTTLAQALARTLGLGFRRV 81 Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124 QFT DLLPAD++G +W F GPIF+ +LLADEINRA P+TQ ALLEAMEERQ Sbjct: 82 QFTSDLLPADLLGVSIWDAASSTFRYQPGPIFSELLLADEINRATPRTQGALLEAMEERQ 141 Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184 V+ G T L PFFVIATQNP F GT PLPEAQLDRFL+ +++GYP + E + Sbjct: 142 VSEGGVTRPLPDPFFVIATQNPAAFVGTSPLPEAQLDRFLMTVTLGYPDARAERTLLETG 201 Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEAGP 244 G+ +L VL L Q V+ V +L Y+ + R RE + +G Sbjct: 202 ----GRGQSVRELPAVLDAPLLLRAQAEVD-AVHAAPALLDYLQLLARATREQPAIASGL 256 Query: 245 SPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEE 304 SPR LAL+ ++A A++ GRD V+P+DV+A SHR+VL+ +++ Sbjct: 257 SPRALLALLAAARAWAYLAGRDMVLPEDVQAVFPALASHRLVLRD----PAARPGDVIRR 312 Query: 305 AVNEVPVP 312 ++E P+P Sbjct: 313 LLDETPIP 320 >pir||B70874 probable moxR protein - Mycobacterium tuberculosis (strain H37RV) >gi|2791413|emb|CAA16007.1| (AL021184) moxR [Mycobacterium tuberculosis] Length = 377 Score = 241 bits (608), Expect = 1e-62 Identities = 138/324 (42%), Positives = 194/324 (59%), Gaps = 26/324 (8%) Query: 5 IEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRI 64 +E I + + +G+ ++V ++ L G+VL E PG+ KTL + FA+V+G + RI Sbjct: 43 LERAIFEVKRIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKTLAVETFARVVGGTFSRI 102 Query: 65 QFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQ 124 QFTPDL+P DIIGT+++R + F+ GP+ N LLADEINRAP K QSALLE M+ER Sbjct: 103 QFTPDLVPTDIIGTRIYRQGREEFDTELGPVVANFLLADEINRAPAKVQSALLEVMQERH 162 Query: 125 VTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKA 184 V+I G TF + PF V+ATQNP+E EG YPLPEAQ DRFL +++VGYP S +EE EI+ Sbjct: 163 VSIGGRTFPMPSPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGYP-SPEEEREII-- 219 Query: 185 RLRWGKDDPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER----- 239 R G P K +LS + L +Q + VH ++ Y+VR+V R+ E+ Sbjct: 220 -YRMGVTPPQA--KQILSTGDLLRLQEIAANNF-VHHALVDYVVRVVFATRKPEQLGMND 275 Query: 240 ----VEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVL-------- 287 V G SPR +L ++ +++ A + GRD+VIP DV + D L HR+VL Sbjct: 276 VKSWVAFGASPRASLGIIAAARSLALVRGRDYVIPQDVIEVIPDVLRHRLVLTYDALADE 335 Query: 288 -KPEYSLERGLEREIVEEAVNEVP 310 PE + R L+ + + VN VP Sbjct: 336 ISPEIVINRVLQTVALPQ-VNAVP 358 >emb|CAA65298.1| (X96434) moxR [Borrelia burgdorferi] >gi|2689172|emb|CAA06007.1| (AJ003222) moxR [Borrelia burgdorferi] Length = 329 Score = 240 bits (607), Expect = 1e-62 Identities = 135/304 (44%), Positives = 193/304 (63%), Gaps = 12/304 (3%) Query: 17 IGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPADII 76 +G+ E++ + L +G+VL E PGL KTL + + VL L ++RIQFTPDLLP+D+ Sbjct: 30 LGQKEMIDAILMGLLTDGHVLLEGVPGLAKTLAIQTVSDVLDLEFKRIQFTPDLLPSDLT 89 Query: 77 GTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRLEQ 136 G V++ G F++ KGP+F+NV+LADEINRAP K QSALLEAM ERQVT+ ET RL Sbjct: 90 GNMVYKSATGTFKVRKGPVFSNVILADEINRAPAKVQSALLEAMGERQVTLGDETHRLPD 149 Query: 137 PFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDDPTVD 196 PFFV+ATQNP+E EGTY LPE+QLDRFL++++V YP +D E+ +LK G+ + + Sbjct: 150 PFFVLATQNPIEQEGTYNLPESQLDRFLLKVNVHYPSVQD-EVRLLKIFSVDGRLE-NIK 207 Query: 197 LKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDER--------VEAGPSPRG 248 + V++ +++R V VKV DD + I + RE ++ +E G SPR Sbjct: 208 VAKVMNAYSLADIKRTV-GRVKV-DDKIMLICYFISASRERDKKTYPFAKYIEFGASPRA 265 Query: 249 ALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNE 308 +L+L+K ++ NA EGR FV+P+DVKA L HRI E +E +I+ ++ Sbjct: 266 SLSLLKCARVNALYEGRIFVLPEDVKAVAYSVLRHRITPSYEAEVEEMSIDDIIRMLLSA 325 Query: 309 VPVP 312 V +P Sbjct: 326 VALP 329 >pir||H82493 MoxR-related protein VCA0175 [imported] - Vibrio cholerae (group O1 strain N16961) >gi|9657565|gb|AAF96088.1| (AE004357) MoxR-related protein [Vibrio cholerae] Length = 318 Score = 235 bits (593), Expect = 6e-61 Identities = 125/291 (42%), Positives = 185/291 (62%), Gaps = 11/291 (3%) Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71 + + IG+ + + ++ A L +G++L E PGL KT K+ A + ++ RIQFTPDLL Sbjct: 13 LNQQVIGQTDFINQLLIALLADGHILVEGPPGLAKTRAVKSLADCIEGDFHRIQFTPDLL 72 Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGET 131 PAD+ G+ V+RPE G F GPIF ++LADEINRAP K Q+A+LEAM E+Q++ +T Sbjct: 73 PADLTGSDVYRPETGEFVFQSGPIFNALVLADEINRAPAKVQAAMLEAMAEKQISAGRKT 132 Query: 132 FRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKD 191 +RL + F V+ATQNP+E EGTYPLPEAQLDRFL+ L V YP +ED E+ IL+ K Sbjct: 133 YRLPELFLVMATQNPIEQEGTYPLPEAQLDRFLLHLEVNYPNAED-ELAILRLNRGEAKG 191 Query: 192 DPTVDLKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEA--------G 243 ++ KP+L++++ ++ V + V + + I Y+VR+V R +A G Sbjct: 192 QQAIN-KPLLTQQQVFSARQEVLN-VHMAEAIENYLVRLVMATRHPANYDAKLAQWLTMG 249 Query: 244 PSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLE 294 SPR +AL + ++A+A+++GRDFV PDDV+ L HR++L + E Sbjct: 250 VSPRATIALDRCARAHAWLQGRDFVTPDDVQVMAFSVLRHRLLLSYQAQAE 300 >pir||G83261 conserved hypothetical protein PA3070 [imported] - Pseudomonas aeruginosa (strain PAO1) >gi|9949177|gb|AAG06458.1|AE004731_6 (AE004731) conserved hypothetical protein [Pseudomonas aeruginosa] Length = 326 Score = 228 bits (574), Expect = 9e-59 Identities = 126/301 (41%), Positives = 192/301 (62%), Gaps = 12/301 (3%) Query: 17 IGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPADII 76 +G+ ++V ++ A L +G++L E PGL KT K A+ L + RIQFTPDLLPADI Sbjct: 26 LGQEKLVDRLLIALLADGHLLVEGAPGLAKTKAIKDLAEGLEAEFHRIQFTPDLLPADIT 85 Query: 77 GTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRLEQ 136 GT+++RPE G F +GPIF +++LADEINRAP K QSALLEAM ERQV++ T+ L Q Sbjct: 86 GTEIYRPETGTFVFQQGPIFHHLVLADEINRAPAKVQSALLEAMAERQVSVGRSTYDLPQ 145 Query: 137 PFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARLRWGKDDPTVD 196 F V+ATQNP+E EGTYPLPEAQLDRFL+ + +GYP + E + +AR + + Sbjct: 146 LFLVMATQNPIEQEGTYPLPEAQLDRFLMHVKIGYPEASVERRILQQARGEALNGEARPE 205 Query: 197 LKPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRRIREDERVEA--------GPSPRG 248 + +E + R+ + + D + Y+V+++ R + +A G SPRG Sbjct: 206 RRVT---QETIFAARQEILGLYMADAVEEYLVQLIMATRTPAKHDAELAEWISYGASPRG 262 Query: 249 ALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSLERGLEREIVEEAVNE 308 ++AL + ++A+A++ GRDFV P+D++A + D L HR++L E + G++++ V + + + Sbjct: 263 SIALDRCARAHAWLGGRDFVSPEDIQAVLFDVLRHRLILTFE-AEAAGIDQDRVVQRILD 321 Query: 309 V 309 V Sbjct: 322 V 322 >pir||S43189 hypothetical protein - Pseudomonas aeruginosa >gi|469101|emb|CAA46565.1| (X65613) ORF2 [Pseudomonas aeruginosa] Length = 263 Score = 199 bits (501), Expect = 3e-50 Identities = 102/182 (56%), Positives = 128/182 (70%) Query: 1 MNERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLN 60 M +E + ++ E+ +GK VR A L G++L ED PG+GKT L+ A A+ LGL+ Sbjct: 1 MLNTLEACLKAVDEILLGKDRQVRLALACLLARGHLLIEDLPGMGKTTLSHALARWLGLS 60 Query: 61 YRRIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAM 120 ++RIQFT DLLP DI+GT V+ + G F GPIF ++LADEINRA PK+QSALLEAM Sbjct: 61 FQRIQFTSDLLPGDILGTSVFDKDSGQFVFHPGPIFAELVLADEINRATPKSQSALLEAM 120 Query: 121 EERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEME 180 EE QVTIEG T L +PFFVIATQNP GT+ LPE+QLDRFL+RLS+GYPG E Sbjct: 121 EEGQVTIEGATRPLPEPFFVIATQNPASQGGTFSLPESQLDRFLMRLSLGYPGRAAERSL 180 Query: 181 IL 182 +L Sbjct: 181 LL 182 >gb|AAC46196.1| (AF002133) transcriptional regulator [Mycobacterium avium] Length = 309 Score = 187 bits (471), Expect = 1e-46 Identities = 93/180 (51%), Positives = 125/180 (68%), Gaps = 1/180 (0%) Query: 3 ERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYR 62 + +E I + + +G+ ++V ++ L G+VL E PG+ K+L + FAKV+G + Sbjct: 43 QTLERAIFEVKRIIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKSLAVETFAKVVGGTFA 102 Query: 63 RIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEE 122 RIQFTP +P DIIGT+++R K F+ GP+ N LLADEINRAP K QSALLE M+E Sbjct: 103 RIQFTPRPVPTDIIGTRIYRQGKEEFDTELGPVVVNFLLADEINRAPAKVQSALLEVMQE 162 Query: 123 RQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEIL 182 R V+I G+TF L PF V+ATQNP+E EG YPLPEAQ DRFL +++VGYP S +EE EI+ Sbjct: 163 RHVSIGGKTFPLPNPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGYP-SPEEEREII 221 >gb|AAB91544.1| (AF017119) MoxR homolog [Allochromatium vinosum] Length = 191 Score = 180 bits (451), Expect = 2e-44 Identities = 89/167 (53%), Positives = 118/167 (70%) Query: 3 ERIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYR 62 +R + + +G +G+ ++ ++ A L +G++L E PGL KT K A L ++ Sbjct: 25 QRFAALRDQVGRAILGQHGLIERLLIALLADGHLLVEGAPGLAKTTAVKHLAAGLEGDFH 84 Query: 63 RIQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEE 122 RIQFTPDLLPAD+ GT+++RP G F +GPIF N+LLADE+NRAP K QSALLEAM E Sbjct: 85 RIQFTPDLLPADLTGTEIYRPHDGSFRFDRGPIFHNLLLADEVNRAPAKVQSALLEAMGE 144 Query: 123 RQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSV 169 RQVT+ ET+ L + F V+ATQNP+E EGTYPLPEAQLDRFL+ + V Sbjct: 145 RQVTVGRETYPLPELFLVMATQNPIEQEGTYPLPEAQLDRFLLHVRV 191 >gb|AAB62561.1| (AF006054) MoxR [Mycobacterium tuberculosis] Length = 211 Score = 174 bits (437), Expect = 1e-42 Identities = 83/158 (52%), Positives = 112/158 (70%) Query: 15 VFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLLPAD 74 + +G+ ++V ++ L G+VL E PG+ K+L + FA+V+G + RIQFTPDL+P D Sbjct: 52 IIVGQDQLVERMLVGLLSKGHVLLEGVPGVAKSLAVETFARVVGGTFSRIQFTPDLVPTD 111 Query: 75 IIGTKVWRPEKGVFEIMKGPIFTNVLLADEINRAPPKTQSALLEAMEERQVTIEGETFRL 134 IIGT+++R + F+ GP+ N LLA EINRAP K QSALLE M+ER V+I G TF + Sbjct: 112 IIGTRIYRQGREEFDTELGPVVANFLLAVEINRAPAKVQSALLEVMQERHVSIGGRTFPM 171 Query: 135 EQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYP 172 PF V+ATQNP+E EG YPLPEAQ DRFL +++VG P Sbjct: 172 PSPFLVMATQNPIEHEGVYPLPEAQRDRFLFKINVGIP 209 >dbj|BAA23276.1| (AB004097) ORF4 [Hyphomicrobium methylovorum] Length = 352 Score = 148 bits (370), Expect = 8e-35 Identities = 101/333 (30%), Positives = 164/333 (48%), Gaps = 30/333 (9%) Query: 4 RIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRR 63 R E +G +G+ +R + A G+VL E G+GKT L +A A LG +Y R Sbjct: 26 RALEFEGEVGRAIVGQERAIRLLVIAVFARGHVLLEGDVGVGKTTLLRAVAHALGGSYER 85 Query: 64 IQFTPDLLPADIIGTKVWRPEKGVFEIMKGPIF-----TNVLLADEINRAPPKTQSALLE 118 ++ T DL+P+D+I + E G + GP+ +V +EINRA P+ S LL Sbjct: 86 VEGTIDLMPSDMI-YYTFLNEDGKPRVEPGPVLRHGSDLSVFFFNEINRARPQVHSLLLR 144 Query: 119 AMEERQVTIEGETFRLEQPF---FVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSE 175 M ER +T F E F V A +N +E E T+ LP A DRFL+ +S+G P ++ Sbjct: 145 LMAERSIT----AFNTEHFFPHVLVFADRNRIEREETFELPAAARDRFLMEVSIGSP-TD 199 Query: 176 DEEMEILKARLRWGKDDPTVDL--KPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVRR 233 DE L R+ D + + V+ + + + ++ V V I +Y + + + Sbjct: 200 DESRRALLFETRFHDVDQLIGALKEGVIDYRQINALAKIIQSSVVVSPAIEKYTLDLWKA 259 Query: 234 IRE-------------DERVEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDA 280 +R+ V G SPRG L++ ++ +A++ GR+ V+P+D++ + Sbjct: 260 VRDPAAANVSIPGVDMTRLVAGGASPRGMSYLIRAARVSAWLAGREMVVPEDIRDIFYEC 319 Query: 281 LSHRIVLKPEYSLER-GLEREIVEEAVNEVPVP 312 ++HRI L P Y L R L R ++++ VP P Sbjct: 320 MAHRIFLSPVYELRREELVRSLIDQIFASVPAP 352 >sp|P30621|MOXR_METEX MOXR PROTEIN (MXAR PROTEIN) >gi|1771259|emb|CAA69191.1| (Y07864) mxaR [Methylobacterium extorquens] Length = 341 Score = 139 bits (346), Expect = 5e-32 Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 22/320 (6%) Query: 12 IGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRRIQFTPDLL 71 I + +G+ +R + A G+V+ E G+GKT L +A A+ LG Y R++ T D++ Sbjct: 25 IAKAVVGQDRAIRLLTIAIFARGHVMLEGDVGVGKTTLLRAVARGLGGAYERVEGTVDMM 84 Query: 72 PADIIGTKVWRPEKGVFEIMKGPIFT-----NVLLADEINRAPPKTQSALLEAMEERQVT 126 P D+I + E G + GP+ +V +EINRA P+ + LL M ER V+ Sbjct: 85 PTDLI-YHTYLGEDGRPRVEPGPVLRRAEDLSVFFFNEINRARPQVHALLLRIMAERSVS 143 Query: 127 IEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDEEMEILKARL 186 +R V A +N +E E T+ LP A DRFL+ + + P + R Sbjct: 144 AFNREYRFPN-LQVFADRNRVEREETFELPAAARDRFLMEIGMEAPRDAARRDLVFDPRF 202 Query: 187 RWGKDDPTVDLKP-VLSKEEFLEMQRRVEHEVKVHDDILRYIVRI------------VRR 233 D T +++ VL E + ++H + I Y+V + + R Sbjct: 203 H-DTDRLTEEVEAGVLDFERIGTIASAIQHAISAEPAIEAYVVGLWEALVRPAPPHPLAR 261 Query: 234 IREDERVEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVIDALSHRIVLKPEYSL 293 R D V+ G SPRG L++ ++ A++EGRD+++P+D++A + ++HR+ L+P Y + Sbjct: 262 HRMDRLVQGGASPRGVAFLVRAARVRAWLEGRDWLVPEDIRAVFPEVMAHRVFLEPVYEM 321 Query: 294 ERG-LEREIVEEAVNEVPVP 312 R + +++ VP P Sbjct: 322 RRAEIVPDLIRAVFETVPAP 341 >sp|P29901|MOXR_PARDE MOXR PROTEIN >gi|94691|pir||D41377 methanol dehydrogenase regulatory protein moxR [validated] - Paracoccus denitrificans Length = 339 Score = 127 bits (316), Expect = 2e-28 Identities = 96/334 (28%), Positives = 157/334 (46%), Gaps = 32/334 (9%) Query: 4 RIEEVINSIGEVFIGKVEVVRKVFAAALVNGNVLFEDHPGLGKTLLAKAFAKVLGLNYRR 63 R + ++ V +G+ +R + +AL G+VL G GKT L +A A+ LG Y R Sbjct: 11 RFRDAEAALNGVVLGQARTIRLLLISALCRGHVLLAGDVGTGKTTLLRAMARALGGPYGR 70 Query: 64 IQFTPDLLPADII-GTKVWRPEKGVFEIMKGPIFTN-----VLLADEINRAPPKTQSALL 117 ++ T DLLP D+I T + E G I GP+ V +EINRA P+ + LL Sbjct: 71 VEGTVDLLPTDLIYSTHI--AEDGRPRIEPGPVLEQGEDMAVFFFNEINRARPQVHALLL 128 Query: 118 EAMEERQVTIEGETFRLEQPFFVIATQNPLEFEGTYPLPEAQLDRFLVRLSVGYPGSEDE 177 M ER ++ +R V A +N +E + T+ LP A DRFL+ ++V P + ++ Sbjct: 129 RLMAERSLSAFRREYRFPH-LQVFADRNQIERDETFELPAAARDRFLMEIAVDAPAAPED 187 Query: 178 EMEI-LKARLRWGKDDPTVDL----KPVLSKEEFLEMQRRVEHEVKVHDDILRYIVRIVR 232 + + + R D T + + +L + V+ + RY+ + Sbjct: 188 RVALAFEPRFH----DTTALIAEVGQGILPYRGLNGLAAGVQSGTHASPALRRYVFDLCE 243 Query: 233 RIRED-------------ERVEAGPSPRGALALMKLSKANAFIEGRDFVIPDDVKAFVID 279 +R + G SPRG L++ ++A A++EGR+ V+P DV+A + Sbjct: 244 ALRNPASAGLALEGADAARLIRGGVSPRGMQHLVRAARACAWLEGREAVLPQDVRAVLAP 303 Query: 280 ALSHRIVLKPEYSLER-GLEREIVEEAVNEVPVP 312 ++HRI L P Y R L +++ A +PVP Sbjct: 304 VMAHRIFLSPAYEPRREALVPALIDAAFATIPVP 337 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.320 0.141 0.397 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 114479321 Number of Sequences: 2977 Number of extensions: 4800092 Number of successful extensions: 12749 Number of sequences better than 1.0e-10: 41 Number of HSP's better than 0.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 12659 Number of HSP's gapped (non-prelim): 46 length of query: 317 length of database: 189,106,746 effective HSP length: 56 effective length of query: 261 effective length of database: 155,591,474 effective search space: 40609374714 effective search space used: 40609374714 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 165 (68.7 bits)