BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1278 (PAB1278) DE:Hypothetical protein
         (272 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75011 hypothetical protein PAB1278 - Pyrococcus abyssi (st...   513  e-145
pir||A71140 hypothetical protein PH0332 - Pyrococcus horikoshii ...   207  1e-52

>pir||H75011 hypothetical protein PAB1278 - Pyrococcus abyssi (strain Orsay)
           >gi|5459048|emb|CAB50534.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 272
           
 Score =  513 bits (1308), Expect = e-145
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MIRGIKALVIVIAIYATLRFFASIDTLMSLLGLGLKLLGIRMSPNGFLFLIFGLIALGLI 60
           MIRGIKALVIVIAIYATLRFFASIDTLMSLLGLGLKLLGIRMSPNGFLFLIFGLIALGLI
Sbjct: 1   MIRGIKALVIVIAIYATLRFFASIDTLMSLLGLGLKLLGIRMSPNGFLFLIFGLIALGLI 60

Query: 61  MSDYSVIVTSSIPFFLYSFVWVFQNSNVLGSNVIASMFGIEVSSSTLLGLIVLLAFSFIV 120
           MSDYSVIVTSSIPFFLYSFVWVFQNSNVLGSNVIASMFGIEVSSSTLLGLIVLLAFSFIV
Sbjct: 61  MSDYSVIVTSSIPFFLYSFVWVFQNSNVLGSNVIASMFGIEVSSSTLLGLIVLLAFSFIV 120

Query: 121 DSYNSYEKLEVTWESYRFGLLISALVILTSIMLFLALSRIDLSTQPVYVKVILLVLLVVP 180
           DSYNSYEKLEVTWESYRFGLLISALVILTSIMLFLALSRIDLSTQPVYVKVILLVLLVVP
Sbjct: 121 DSYNSYEKLEVTWESYRFGLLISALVILTSIMLFLALSRIDLSTQPVYVKVILLVLLVVP 180

Query: 181 FLLVQEKGKKVITVIKVVTRERSLVKAEGRKVKIIPISGSLEPKIFELEGEFEEVILELE 240
           FLLVQEKGKKVITVIKVVTRERSLVKAEGRKVKIIPISGSLEPKIFELEGEFEEVILELE
Sbjct: 181 FLLVQEKGKKVITVIKVVTRERSLVKAEGRKVKIIPISGSLEPKIFELEGEFEEVILELE 240

Query: 241 NSEKRVKIPKILESYDKGRKFVLYSDGKVSEL 272
           NSEKRVKIPKILESYDKGRKFVLYSDGKVSEL
Sbjct: 241 NSEKRVKIPKILESYDKGRKFVLYSDGKVSEL 272


>pir||A71140 hypothetical protein PH0332 - Pyrococcus horikoshii
           >gi|3256723|dbj|BAA29406.1| (AP000002) 274aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 274
           
 Score =  207 bits (521), Expect = 1e-52
 Identities = 113/271 (41%), Positives = 177/271 (64%), Gaps = 8/271 (2%)

Query: 1   MIRGIKALVIVIAIYATLRFFASIDTLMSLLGLGLKLLGIRMSPNGFLFLIFGLIALGLI 60
           MI+ ++ L++ +  Y  L+F  SI  L+ L+ LGL +L I+M P  F+FLIF +I +  +
Sbjct: 1   MIKILRGLIVTLVTYGMLKFTFSITPLLDLVKLGLIILKIKMPPETFIFLIFAMIGINFL 60

Query: 61  MSDYSVIVTSSIPFFLYSFVWVFQNSNVLG--SNVIASMFGIEVSSSTLLGLIVLLAFSF 118
           +SD S++  SS+PF LY  VW+FQNSN+ G  S +  S+F  +VS  ++L L++LLAFSF
Sbjct: 61  LSDSSLVAISSVPFILYFLVWIFQNSNIFGDLSILFTSIFSGKVSDLSILALLLLLAFSF 120

Query: 119 IVDSYNSYEKLEVTWESYRFGLLISALVILTSIMLFLALSRI-DLSTQPVYVKVILLVLL 177
           +VD+Y+ Y K+ V W     G+L S+ VIL S    L + R+ +     +++ V+LL+LL
Sbjct: 121 VVDTYSRYVKIGVDWRELNLGILFSSFVILISFFASLLMIRLKEFHEGSIFLGVLLLLLL 180

Query: 178 VVPF-LLVQEKGKKVITVIKVVTRERSLVKAEGRKVKIIPISGSLEPKIFELEGEFEEV- 235
              F +L +E+ K+  T+I+V+T+ERS V+ +   V+IIP  G  + KI E++G+  EV 
Sbjct: 181 SFTFSMLEEEEEKETSTIIRVITKERSEVRVKEDIVEIIPEGGDEDLKIIEIKGKPREVY 240

Query: 236 ILELENSEKRVKIPKILESYDKGRKFVLYSD 266
           ILE    +KR+K+PK+LE  D G++ VLYS+
Sbjct: 241 ILE---GDKRIKVPKVLEVLDSGKRVVLYSN 268


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.145    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85356887
Number of Sequences: 2977
Number of extensions: 3326647
Number of successful extensions: 16172
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16167
Number of HSP's gapped (non-prelim): 2
length of query: 272
length of database: 189,106,746
effective HSP length: 56
effective length of query: 216
effective length of database: 155,591,474
effective search space: 33607758384
effective search space used: 33607758384
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 164 (68.3 bits)