BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1279 (PAB1279) DE:Hypothetical protein
         (402 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75011 hypothetical protein PAB1279 - Pyrococcus abyssi (st...   815  0.0
pir||B71140 hypothetical protein PH0333 - Pyrococcus horikoshii ...   584  e-166

>pir||G75011 hypothetical protein PAB1279 - Pyrococcus abyssi (strain Orsay)
           >gi|5459047|emb|CAB50533.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 402
           
 Score =  815 bits (2083), Expect = 0.0
 Identities = 402/402 (100%), Positives = 402/402 (100%)

Query: 1   MRRIAIVVALLLMTLLPNVAAWNGQLCPDVKYQKSIEAIATDNSTIYASCSYRMVAGSPG 60
           MRRIAIVVALLLMTLLPNVAAWNGQLCPDVKYQKSIEAIATDNSTIYASCSYRMVAGSPG
Sbjct: 1   MRRIAIVVALLLMTLLPNVAAWNGQLCPDVKYQKSIEAIATDNSTIYASCSYRMVAGSPG 60

Query: 61  GLVGIYYLGTTGAFSENGTKLWEVDSGFVTKLYPWNDYLLVGSMGGLLKLEKNGSYAGRY 120
           GLVGIYYLGTTGAFSENGTKLWEVDSGFVTKLYPWNDYLLVGSMGGLLKLEKNGSYAGRY
Sbjct: 61  GLVGIYYLGTTGAFSENGTKLWEVDSGFVTKLYPWNDYLLVGSMGGLLKLEKNGSYAGRY 120

Query: 121 LTRYKLYDFDVRGSYAYLASGDVFSKSEIKGAVAKVYLPNMSEIWVVNITGMADRVRAGK 180
           LTRYKLYDFDVRGSYAYLASGDVFSKSEIKGAVAKVYLPNMSEIWVVNITGMADRVRAGK
Sbjct: 121 LTRYKLYDFDVRGSYAYLASGDVFSKSEIKGAVAKVYLPNMSEIWVVNITGMADRVRAGK 180

Query: 181 DVIYVGTGYPSGFSGPVRFGNVIGLSEDGKVLWNITLGEWVRDMELWRDKVVIGTGWNET 240
           DVIYVGTGYPSGFSGPVRFGNVIGLSEDGKVLWNITLGEWVRDMELWRDKVVIGTGWNET
Sbjct: 181 DVIYVGTGYPSGFSGPVRFGNVIGLSEDGKVLWNITLGEWVRDMELWRDKVVIGTGWNET 240

Query: 241 GHLLVINKDGKVLMNISTFYVENILVNGDIAYVSGLKGVMAVDLSKGKILWKTDLPYRIK 300
           GHLLVINKDGKVLMNISTFYVENILVNGDIAYVSGLKGVMAVDLSKGKILWKTDLPYRIK
Sbjct: 241 GHLLVINKDGKVLMNISTFYVENILVNGDIAYVSGLKGVMAVDLSKGKILWKTDLPYRIK 300

Query: 301 VLKLYKDKLIAGGGEFTTKNETVYSVGSLYVLDPRGGKVLKEISMGYVRSLGIIDDMIVV 360
           VLKLYKDKLIAGGGEFTTKNETVYSVGSLYVLDPRGGKVLKEISMGYVRSLGIIDDMIVV
Sbjct: 301 VLKLYKDKLIAGGGEFTTKNETVYSVGSLYVLDPRGGKVLKEISMGYVRSLGIIDDMIVV 360

Query: 361 GTGSNILVTLKEDEVLPKGICGPGILLLLALLILFKEFHERS 402
           GTGSNILVTLKEDEVLPKGICGPGILLLLALLILFKEFHERS
Sbjct: 361 GTGSNILVTLKEDEVLPKGICGPGILLLLALLILFKEFHERS 402


>pir||B71140 hypothetical protein PH0333 - Pyrococcus horikoshii
           >gi|3256724|dbj|BAA29407.1| (AP000002) 399aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 399
           
 Score =  584 bits (1489), Expect = e-166
 Identities = 267/392 (68%), Positives = 330/392 (84%)

Query: 1   MRRIAIVVALLLMTLLPNVAAWNGQLCPDVKYQKSIEAIATDNSTIYASCSYRMVAGSPG 60
           M+ +++++ + L+ L P V+AWNGQLC DVKYQKSIEAI  +NST+YASCSYRMVA S G
Sbjct: 1   MKNLSLLIFIFLIALTPAVSAWNGQLCSDVKYQKSIEAIIAENSTVYASCSYRMVANSTG 60

Query: 61  GLVGIYYLGTTGAFSENGTKLWEVDSGFVTKLYPWNDYLLVGSMGGLLKLEKNGSYAGRY 120
           GL+GIYYLGTTGAF++NGTKLWE+DSGFVTKL  WND LL+GSMGGLL+++KNGSY  RY
Sbjct: 61  GLIGIYYLGTTGAFTKNGTKLWEIDSGFVTKLSLWNDKLLIGSMGGLLEVDKNGSYISRY 120

Query: 121 LTRYKLYDFDVRGSYAYLASGDVFSKSEIKGAVAKVYLPNMSEIWVVNITGMADRVRAGK 180
           LTRYKLYDFD++G+YAYLASGDVF+ SE+KG+V KVYLPNMS++W VN+T M  R+R G 
Sbjct: 121 LTRYKLYDFDLKGNYAYLASGDVFTGSEMKGSVVKVYLPNMSKVWSVNLTQMPGRIRVGN 180

Query: 181 DVIYVGTGYPSGFSGPVRFGNVIGLSEDGKVLWNITLGEWVRDMELWRDKVVIGTGWNET 240
            ++YVGTGYPSG+ G ++FG +IG+S+DGK+LW + LGEWVRD+E+W +  V+GTG+N T
Sbjct: 181 GIVYVGTGYPSGYVGKLKFGELIGISKDGKILWKVNLGEWVRDLEVWENNAVVGTGYNST 240

Query: 241 GHLLVINKDGKVLMNISTFYVENILVNGDIAYVSGLKGVMAVDLSKGKILWKTDLPYRIK 300
           G+LLVIN  GKVL+N+S FYVE+IL+NG+IAY+SGLK V AVDL  GK LW+T+ PYRIK
Sbjct: 241 GNLLVINPKGKVLLNMSMFYVEDILINGNIAYISGLKKVTAVDLRNGKKLWETNFPYRIK 300

Query: 301 VLKLYKDKLIAGGGEFTTKNETVYSVGSLYVLDPRGGKVLKEISMGYVRSLGIIDDMIVV 360
           VLKLYK KL+AGGG+F  KN T+YSVG LYV++PR GK++  IS GYVRSL   DDMI V
Sbjct: 301 VLKLYKGKLLAGGGKFVEKNGTIYSVGDLYVINPRNGKIINRISTGYVRSLATGDDMIFV 360

Query: 361 GTGSNILVTLKEDEVLPKGICGPGILLLLALL 392
           GTGSNIL+ L ED V+PK +CGPG LLLL LL
Sbjct: 361 GTGSNILMALNEDNVIPKKVCGPGFLLLLLLL 392


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.423 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162451786
Number of Sequences: 2977
Number of extensions: 7564931
Number of successful extensions: 15246
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15223
Number of HSP's gapped (non-prelim): 2
length of query: 402
length of database: 189,106,746
effective HSP length: 53
effective length of query: 349
effective length of database: 157,386,935
effective search space: 54928040315
effective search space used: 54928040315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)