BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1280 (PAB1280) DE:Hypothetical protein
         (207 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75011 hypothetical protein PAB1280 - Pyrococcus abyssi (st...   417  e-116
pir||D71140 hypothetical protein PH0335 - Pyrococcus horikoshii ...   307  7e-83

>pir||E75011 hypothetical protein PAB1280 - Pyrococcus abyssi (strain Orsay)
           >gi|5459045|emb|CAB50531.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 207
           
 Score =  417 bits (1060), Expect = e-116
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MFGKVKLRDNMDISLGGKTISISRVEDYYVYLRDEVERVIVGDEISILPEPARGYGVKLM 60
           MFGKVKLRDNMDISLGGKTISISRVEDYYVYLRDEVERVIVGDEISILPEPARGYGVKLM
Sbjct: 1   MFGKVKLRDNMDISLGGKTISISRVEDYYVYLRDEVERVIVGDEISILPEPARGYGVKLM 60

Query: 61  MIRLESPIAIAPGKVLRGFIEVPIDVSVRTGSSEIDRFGIGREKYALYGTLENGVIVRYV 120
           MIRLESPIAIAPGKVLRGFIEVPIDVSVRTGSSEIDRFGIGREKYALYGTLENGVIVRYV
Sbjct: 61  MIRLESPIAIAPGKVLRGFIEVPIDVSVRTGSSEIDRFGIGREKYALYGTLENGVIVRYV 120

Query: 121 RAKLESNPRGVGNLKLIVLNNGNNWGFIDRVVFPMMNIMYYSSDMAFYPTIRVEIEEDIN 180
           RAKLESNPRGVGNLKLIVLNNGNNWGFIDRVVFPMMNIMYYSSDMAFYPTIRVEIEEDIN
Sbjct: 121 RAKLESNPRGVGNLKLIVLNNGNNWGFIDRVVFPMMNIMYYSSDMAFYPTIRVEIEEDIN 180

Query: 181 VVNTGEAPLPNLYSTGEEKSLRFKMRW 207
           VVNTGEAPLPNLYSTGEEKSLRFKMRW
Sbjct: 181 VVNTGEAPLPNLYSTGEEKSLRFKMRW 207


>pir||D71140 hypothetical protein PH0335 - Pyrococcus horikoshii
           >gi|3256726|dbj|BAA29409.1| (AP000002) 212aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 212
           
 Score =  307 bits (778), Expect = 7e-83
 Identities = 143/207 (69%), Positives = 175/207 (84%), Gaps = 1/207 (0%)

Query: 1   MFGKVKLRDNMDISLGGKTISISRVEDYYVYLRDEVERVIVGDEISILPEPARGYGVKLM 60
           MFGK+KL  N++I +G + ISI    DY++YLR +VERVIVGD + ILP PARGYGVKLM
Sbjct: 7   MFGKIKLT-NLEIKMGNELISIKEEGDYFLYLRRDVERVIVGDYLQILPAPARGYGVKLM 65

Query: 61  MIRLESPIAIAPGKVLRGFIEVPIDVSVRTGSSEIDRFGIGREKYALYGTLENGVIVRYV 120
           M++L+ PIA+APGK + GFI+VP++VSV+ G SEIDRFGIGREKYALYGTLENGVIVRY 
Sbjct: 66  MVKLKRPIALAPGKSIEGFIQVPVEVSVKVGDSEIDRFGIGREKYALYGTLENGVIVRYC 125

Query: 121 RAKLESNPRGVGNLKLIVLNNGNNWGFIDRVVFPMMNIMYYSSDMAFYPTIRVEIEEDIN 180
              + + P G+GNLK+ ++N G +WGFIDR+VFPM+++MYYS D AFYP IRVEI+EDIN
Sbjct: 126 TGYIGNEPNGLGNLKVKIVNKGEDWGFIDRIVFPMLDLMYYSKDKAFYPLIRVEIQEDIN 185

Query: 181 VVNTGEAPLPNLYSTGEEKSLRFKMRW 207
           V+NTGEAPLPNL STGEEKSLRF+MRW
Sbjct: 186 VINTGEAPLPNLVSTGEEKSLRFRMRW 212


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.142    0.410 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77992108
Number of Sequences: 2977
Number of extensions: 3224315
Number of successful extensions: 5821
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5819
Number of HSP's gapped (non-prelim): 2
length of query: 207
length of database: 189,106,746
effective HSP length: 53
effective length of query: 154
effective length of database: 157,386,935
effective search space: 24237587990
effective search space used: 24237587990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)