BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1281 (PAB1281) DE:Hypothetical protein
(255 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75011 hypothetical protein PAB1281 - Pyrococcus abyssi (st... 498 e-140
pir||E71140 hypothetical protein PH0336 - Pyrococcus horikoshii ... 399 e-110
gi|11499141 conserved hypothetical protein [Archaeoglobus fulgid... 132 4e-30
pir||C72573 hypothetical protein APE1867 - Aeropyrum pernix (str... 113 2e-24
sp|O66994|Y812_AQUAE HYPOTHETICAL PROTEIN AQ_812 >gi|7447499|pir... 93 4e-18
pir||H72622 hypothetical protein APE1441 - Aeropyrum pernix (str... 91 1e-17
gb|AAG19543.1| (AE005044) Vng1164c [Halobacterium sp. NRC-1] 91 1e-17
sp|Q57634|Y170_METJA HYPOTHETICAL PROTEIN MJ0170 >gi|2127998|pir... 88 1e-16
pir||H71275 conserved hypothetical protein TP0822 - syphilis spi... 87 2e-16
sp|P57527|Y452_BUCAI HYPOTHETICAL PROTEIN BU452 >gi|10039116|dbj... 85 6e-16
sp|O52401|YGGB_EDWIC HYPOTHETICAL 30.6 KDA PROTEIN IN ICIA-FBA I... 84 2e-15
pir||F72240 conserved hypothetical protein - Thermotoga maritima... 84 2e-15
pir||C82162 conserved hypothetical protein VC1751 [imported] - V... 84 2e-15
sp|Q58543|YB43_METJA HYPOTHETICAL PROTEIN MJ1143 >gi|2128692|pir... 81 1e-14
pir||E70387 conserved hypothetical protein aq_1013 - Aquifex aeo... 81 1e-14
sp|P11666|YGGB_ECOLI HYPOTHETICAL 30.9 KDA PROTEIN IN SBM-FBA IN... 81 2e-14
gb|AAG20254.1| (AE005100) Vng2113c [Halobacterium sp. NRC-1] 81 2e-14
sp|Q55717|Y639_SYNY3 HYPOTHETICAL 33.2 KD PROTEIN SLR0639 >gi|74... 80 2e-14
pir||F75546 conserved hypothetical protein - Deinococcus radiodu... 80 2e-14
pir||F81441 probable integral membrane protein Cj0238 [imported]... 80 3e-14
pir||A82318 conserved hypothetical protein VC0480 [imported] - V... 80 3e-14
pir||H82702 small conductance mechanosensitive ion channel XF125... 80 3e-14
pir||D70156 conserved hypothetical protein BB0453 - Lyme disease... 79 6e-14
pir||G64642 conserved hypothetical integral membrane protein HP0... 78 1e-13
pir||C83031 conserved hypothetical protein PA4925 [imported] - P... 77 2e-13
pir||B71871 hypothetical protein jhp0915 - Helicobacter pylori (... 76 5e-13
pir||B83096 conserved hypothetical protein PA4394 [imported] - P... 76 5e-13
pir||A69867 conserved hypothetical protein ykuT - Bacillus subti... 75 7e-13
sp|O07594|YHDY_BACSU HYPOTHETICAL 42.5 KD PROTEIN IN CITA-SSPB I... 75 9e-13
pir||A83006 hypothetical protein PA5121 [imported] - Pseudomonas... 73 3e-12
gb|AAG15196.1|AF286047_4 (AF286047) AefA [Chlorobium tepidum] 73 5e-12
dbj|BAB06402.1| (AP001516) unknown conserved protein [Bacillus h... 72 8e-12
dbj|BAB06385.1| (AP001516) unknown conserved protein [Bacillus h... 71 1e-11
pir||G69111 conserved hypothetical protein MTH1830 - Methanobact... 70 3e-11
sp|O25170|Y415_HELPY HYPOTHETICAL INTEGRAL HP0415 >gi|7463936|pi... 69 7e-11
sp|Q9ZKG7|Y415_HELPJ HYPOTHETICAL INTEGRAL HP0415/JHP0969 >gi|74... 69 7e-11
pir||B83018 conserved hypothetical protein PA5022 [imported] - P... 68 9e-11
>pir||D75011 hypothetical protein PAB1281 - Pyrococcus abyssi (strain Orsay)
>gi|5459044|emb|CAB50530.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 346
Score = 498 bits (1268), Expect = e-140
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MVEMLQTTIIEGIKNQTMIVEVLKALAIILFGLVVGELIRKWIISLSRSTKYVWIFNEET 60
MVEMLQTTIIEGIKNQTMIVEVLKALAIILFGLVVGELIRKWIISLSRSTKYVWIFNEET
Sbjct: 1 MVEMLQTTIIEGIKNQTMIVEVLKALAIILFGLVVGELIRKWIISLSRSTKYVWIFNEET 60
Query: 61 AKLLWRFILVASILSGLDTLGILEFKVYGAKISSLIGAALLFYFAYLIGRKAQDYWVAKG 120
AKLLWRFILVASILSGLDTLGILEFKVYGAKISSLIGAALLFYFAYLIGRKAQDYWVAKG
Sbjct: 61 AKLLWRFILVASILSGLDTLGILEFKVYGAKISSLIGAALLFYFAYLIGRKAQDYWVAKG 120
Query: 121 GADAQIKAKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLIS 180
GADAQIKAKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLIS
Sbjct: 121 GADAQIKAKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLIS 180
Query: 181 GIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAK 240
GIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAK
Sbjct: 181 GIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAK 240
Query: 241 YPARRVDVVVGISYA 255
YPARRVDVVVGISYA
Sbjct: 241 YPARRVDVVVGISYA 255
>pir||E71140 hypothetical protein PH0336 - Pyrococcus horikoshii
>gi|3256727|dbj|BAA29410.1| (AP000002) 335aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 335
Score = 399 bits (1013), Expect = e-110
Identities = 188/234 (80%), Positives = 216/234 (91%)
Query: 21 EVLKALAIILFGLVVGELIRKWIISLSRSTKYVWIFNEETAKLLWRFILVASILSGLDTL 80
E+LKA+A ++ G+V+ L+R WI+ LSRSTKYVW+FNE+TAKL WRFI++ SIL+ LDTL
Sbjct: 10 EILKAIATLIGGIVIAGLVRVWILKLSRSTKYVWVFNEDTAKLFWRFIVIVSILAALDTL 69
Query: 81 GILEFKVYGAKISSLIGAALLFYFAYLIGRKAQDYWVAKGGADAQIKAKVFYYTIVTLAF 140
GILEF +YGAK+SSLI LLFY +YL+G+K Q+YWV KGGA+AQIKAK+FYYT++TLAF
Sbjct: 70 GILEFTIYGAKVSSLIAGILLFYISYLLGKKVQNYWVVKGGAEAQIKAKLFYYTLITLAF 129
Query: 141 FLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGE 200
FLALN+AGFTGKLTTIVAAAGITGIVLGFSAQTVI+NLISGIFMYFDKPLEIGDP+EV
Sbjct: 130 FLALNVAGFTGKLTTIVAAAGITGIVLGFSAQTVISNLISGIFMYFDKPLEIGDPIEVAG 189
Query: 201 YSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISY 254
YSG+VHDIR+FSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISY
Sbjct: 190 YSGVVHDIRIFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISY 243
>gi|11499141 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136692|sp|O28726|YF46_ARCFU HYPOTHETICAL PROTEIN
AF1546 >gi|7444697|pir||A69443 conserved hypothetical
protein AF1546 - Archaeoglobus fulgidus
>gi|2649017|gb|AAB89702.1| (AE000996) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 283
Score = 132 bits (329), Expect = 4e-30
Identities = 76/182 (41%), Positives = 110/182 (59%), Gaps = 8/182 (4%)
Query: 80 LGILEFKVYGAK-----ISSLIGAALLFYFAYLIGRKAQDYWVAKGGADA-QIKAKVFYY 133
+ +L +K+YG I ++ AL A LI + + K D ++ KV Y+
Sbjct: 5 IDVLNYKLYGDVTVYDIIVVIVVMALATIIAKLITTNLRRALIDKMKRDQLELMLKVIYF 64
Query: 134 TIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIG 193
I+ +AF L G L+ ++ A GITGIVLGF++Q+V+ANL+SGIF+ +KP++IG
Sbjct: 65 GIIIVAFIAVLPALGLD--LSGLLVAGGITGIVLGFASQSVVANLVSGIFLISEKPIKIG 122
Query: 194 DPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGIS 253
D V + +G V D+ + ST IRT+DGL VRIPNEK+F S I N + ARR + VVGI
Sbjct: 123 DQVNIDGVAGFVEDVNILSTIIRTYDGLYVRIPNEKVFTSNITNYVAHIARRFEYVVGIR 182
Query: 254 YA 255
Y+
Sbjct: 183 YS 184
>pir||C72573 hypothetical protein APE1867 - Aeropyrum pernix (strain K1)
>gi|5105559|dbj|BAA80872.1| (AP000062) 295aa long
hypothetical protein [Aeropyrum pernix]
Length = 295
Score = 113 bits (281), Expect = 2e-24
Identities = 68/188 (36%), Positives = 107/188 (56%), Gaps = 20/188 (10%)
Query: 61 AKLLWRF-ILVASILSGLDTLGILEFKVYGAKISSLIGAALLFYFAYLIGRKAQDYWVAK 119
A L W F + + +L+ + L + GA + L+ + + YL R ++D VA
Sbjct: 19 ASLSWPFNVSLEQVLTAILILSV------GAVAALLVRGRV---YIYLSKRTSRDIAVAI 69
Query: 120 GGADAQIKAKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLI 179
+++ +YTI+ L AL G ++ + A GI GI LG ++QTV +NLI
Sbjct: 70 --------SRILFYTILFLTGVAALAQLGID--ISVFLVAGGIVGIALGIASQTVASNLI 119
Query: 180 SGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLA 239
+G+F+Y ++P ++GDPV VG G+V+DI + S++I WDG++ RIPNE LF S + L
Sbjct: 120 AGVFLYLERPFKVGDPVIVGSIGGVVYDISILSSKILKWDGVMARIPNEALFKSNVDVLN 179
Query: 240 KYPARRVD 247
K ARRV+
Sbjct: 180 KSLARRVE 187
>sp|O66994|Y812_AQUAE HYPOTHETICAL PROTEIN AQ_812 >gi|7447499|pir||G70370 conserved
hypothetical protein aq_812 - Aquifex aeolicus
>gi|2983371|gb|AAC06958.1| (AE000708) hypothetical
protein [Aquifex aeolicus]
Length = 368
Score = 92.8 bits (227), Expect = 4e-18
Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 17/251 (6%)
Query: 19 IVEVLKALAIILFGLVVGELIRKWII------SLSRSTKYVWIFNEETAKLLWRFILVAS 72
+ +++ A AI+LF L++ LI I+ ++ T + + K FI+V
Sbjct: 27 LYKIIIASAIMLFTLILRRLIAFLIVKILTKLTIRTKTDVDELIVKAFVKPFSYFIVVFG 86
Query: 73 ILSGLDTLGILEFKVYGAKI----SSLIGAALLFYFAYLIGRKAQDYWVAKGGADAQIKA 128
L L + KVY K S LI + F L K +++V GG D +
Sbjct: 87 FYLSLLVLEVP--KVYADKFLKTFSLLILGWAIIRFLNLFHNKIVEFFVKVGGKDFAEEV 144
Query: 129 KVFYYTIVTLAFFLALNIAGFTGK----LTTIVAAAGITGIVLGFSAQTVIANLISGIFM 184
F I+ AF + + A + + I+A+ G+ G+ + +A+ N++SG+ +
Sbjct: 145 GDFILKILK-AFVVVIVGASLLQEWGVNIGAILASVGLLGLAVSLAAKDTFENILSGLII 203
Query: 185 YFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPAR 244
DKP+++G+ V+V ++ G V DI + ST+IRT+D LV IPN + N+ ++N + R
Sbjct: 204 LLDKPVKVGETVKVKDFMGSVEDIGLRSTKIRTFDKSLVTIPNRDIVNNHVENFTRRNKR 263
Query: 245 RVDVVVGISYA 255
RV +G+ Y+
Sbjct: 264 RVRFYIGVVYS 274
>pir||H72622 hypothetical protein APE1441 - Aeropyrum pernix (strain K1)
>gi|5105124|dbj|BAA80438.1| (AP000061) 285aa long
hypothetical protein [Aeropyrum pernix]
Length = 285
Score = 91.3 bits (223), Expect = 1e-17
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 2/127 (1%)
Query: 128 AKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFD 187
A+ YY ++ L AL G +LT ++ A G G+VL + Q + +N SG+++Y +
Sbjct: 67 ARSTYYMVLFLTAVAALQALGV--ELTALLVAGGFAGLVLSLALQPLFSNFFSGLYLYGE 124
Query: 188 KPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVD 247
K L IGD + +G + G V +I STR+RT DG +VRIPN ++ N + N +K RR+
Sbjct: 125 KSLVIGDLISIGGFIGRVVEISTMSTRVRTLDGEVVRIPNSRIINDYMVNYSKSAVRRLT 184
Query: 248 VVVGISY 254
I+Y
Sbjct: 185 FKASIAY 191
>gb|AAG19543.1| (AE005044) Vng1164c [Halobacterium sp. NRC-1]
Length = 300
Score = 90.9 bits (222), Expect = 1e-17
Identities = 48/120 (40%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 136 VTLAFFLALNIAGFTG-KLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGD 194
+TL + I GF L+ ++ AG GIVLG +A+ + ++I+G+ + F +P EIGD
Sbjct: 75 ITLYIGALIVILGFWNLDLSGLLIGAGFAGIVLGMAARQTLGSVIAGLVLMFSRPFEIGD 134
Query: 195 PVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISY 254
V+VG+ GIV DI + +TR++T+DG V +PN+ + +SEI N ++ RV V VG+ Y
Sbjct: 135 WVQVGDKQGIVTDITIVNTRLQTFDGEYVMLPNDVVGSSEIVNRSRKGRLRVHVSVGVDY 194
>sp|Q57634|Y170_METJA HYPOTHETICAL PROTEIN MJ0170 >gi|2127998|pir||C64321 hypothetical
protein homolog MJ0170 - Methanococcus jannaschii
>gi|1590923|gb|AAB98155.1| (U67474) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 350
Score = 87.8 bits (214), Expect = 1e-16
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 129 KVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDK 188
KV + L AL+ G+ +T ++A G+ G+ L + Q I N I+GI + DK
Sbjct: 136 KVVKILTILLGILTALSSVGYD--ITALLAGLGVGGLALALAMQDTIKNFIAGILILIDK 193
Query: 189 PLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDV 248
P +G V+V GIV +I + STRIRT+D L+ IPN +L +S I+NL RRV +
Sbjct: 194 PFSLGHWVKVKGAEGIVEEIGIRSTRIRTFDYTLITIPNSELLDSAIENLTVRDRRRVLM 253
Query: 249 VVGISY 254
+G++Y
Sbjct: 254 TIGLTY 259
>pir||H71275 conserved hypothetical protein TP0822 - syphilis spirochete
>gi|3323135|gb|AAC65790.1| (AE001253) conserved
hypothetical protein [Treponema pallidum]
Length = 301
Score = 87.4 bits (213), Expect = 2e-16
Identities = 44/126 (34%), Positives = 71/126 (55%), Gaps = 2/126 (1%)
Query: 129 KVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDK 188
K Y T+ F A + G ++ ++ AAGI G+ LGF+AQT ++N+ISG+F+ ++
Sbjct: 83 KTLNYLSFTVMTFTAFHWLGIN--VSALLGAAGIAGVALGFAAQTSVSNVISGLFVMTER 140
Query: 189 PLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDV 248
I D +E+ G V I + S ++T DG VR+PNE + + + N + P RRV
Sbjct: 141 AFRIQDVIEIDGIVGAVQSINLLSVALKTLDGQYVRVPNETILKANLVNYSHCPHRRVKT 200
Query: 249 VVGISY 254
V ++Y
Sbjct: 201 EVSVAY 206
>sp|P57527|Y452_BUCAI HYPOTHETICAL PROTEIN BU452 >gi|10039116|dbj|BAB13150.1| (AP001119)
hypothetical protein [Buchnera sp. APS]
Length = 305
Score = 85.4 bits (208), Expect = 6e-16
Identities = 41/122 (33%), Positives = 72/122 (58%), Gaps = 2/122 (1%)
Query: 133 YTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEI 192
Y I+T F AL G + T+++A G G+ +G + Q ++N +G+ + +PL+
Sbjct: 99 YIIITFTFIAALGRIGV--QTTSVIAILGAAGMAIGLALQGSLSNFAAGVLLVTLRPLKT 156
Query: 193 GDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGI 252
+ V++G SG V +I +F T +RT DG +V +PN K+ + I N ++ PARR + ++ +
Sbjct: 157 EEYVDLGSVSGTVLNIHIFYTTLRTLDGKIVVVPNNKIISGNIINYSREPARRNEFIISV 216
Query: 253 SY 254
SY
Sbjct: 217 SY 218
>sp|O52401|YGGB_EDWIC HYPOTHETICAL 30.6 KDA PROTEIN IN ICIA-FBA INTERGENIC REGION
>gi|2708660|gb|AAB92571.1| (AF037440) putative 30.6 kDa
protein [Edwardsiella ictaluri]
Length = 286
Score = 83.9 bits (204), Expect = 2e-15
Identities = 37/127 (29%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Query: 128 AKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFD 187
A + Y I+ AL G + T+++A G G+ +G + Q ++N +G+ +
Sbjct: 70 AAMVRYAILAFTIIAALGRLGV--QTTSVIAVLGAAGLAVGLALQGSLSNFAAGVLLVLF 127
Query: 188 KPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVD 247
+P G+ V++G +G V ++++FST + T D ++ +PN K+ I N ++ P RR+D
Sbjct: 128 RPFRAGEVVDLGGVTGTVREVQIFSTTLATADNKVIVVPNGKIIAGNIINFSREPKRRID 187
Query: 248 VVVGISY 254
++VG++Y
Sbjct: 188 IIVGVAY 194
>pir||F72240 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982130|gb|AAD36629.1|AE001801_16 (AE001801)
conserved hypothetical protein [Thermotoga maritima]
Length = 268
Score = 83.9 bits (204), Expect = 2e-15
Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 92 ISSLIGAALLFYFAYLIGR---KAQDYWVAKGGADAQIKAKVFYYT---IVTLAFFLALN 145
++ LI A+ +YL+ + K + V K G + Q++ + ++ I +A + L+
Sbjct: 2 LAKLILTAVTVVVSYLVFKWLFKLIEKSVEKLGKELQMRNTIRFFLGLIISVIAVMIILD 61
Query: 146 IAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGEYSGIV 205
I + L ++A GI G+V+G + Q +AN SG+F+ + ++ G+ +E G SG V
Sbjct: 62 IWDLS--LAPLLAGVGIGGLVIGLALQEPLANFFSGLFLLVSRAVKEGEALEAGGVSGTV 119
Query: 206 HDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISYA 255
+ + T IRTWDG V IPN+ ++N +I + RR ++VVG+ Y+
Sbjct: 120 EVVNLNHTVIRTWDGRRVMIPNKAVWNDKIIHFWPSNVRRQEIVVGVPYS 169
>pir||C82162 conserved hypothetical protein VC1751 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656273|gb|AAF94901.1|
(AE004252) conserved hypothetical protein [Vibrio
cholerae]
Length = 292
Score = 83.9 bits (204), Expect = 2e-15
Identities = 55/222 (24%), Positives = 101/222 (44%), Gaps = 28/222 (12%)
Query: 34 VVGELIRKWIISLSRSTKYVWIFNEETAKLLWRFILVASILSGLDTLGILEFKVYGAKIS 93
+V ++R W SL W+ + L FI + +L+ GAK++
Sbjct: 1 MVFSIVRHWSNSLVN-----WLASNAVQHLFQLFIFLLILLAAKG----------GAKVT 45
Query: 94 SLIGAALLFYFAYLIGRKAQDYWVAKGGADAQIKAKVFYYTIVTLAFFLALNIAGFTGKL 153
+ + + I QD++V+ G + + + L+ G L
Sbjct: 46 RTVVRSAVNSKNIRISHLMQDFFVSMSGK-----------VVWVIGILVGLSQIGLN--L 92
Query: 154 TTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFST 213
++ GI G+++GF+ Q ++N +G+ + +P ++GD V G G V + + +T
Sbjct: 93 APVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSHMSLVNT 152
Query: 214 RIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISYA 255
IRT+D ++ +PN K++ IKN+ RRVD+V GI Y+
Sbjct: 153 TIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMVFGIGYS 194
>sp|Q58543|YB43_METJA HYPOTHETICAL PROTEIN MJ1143 >gi|2128692|pir||F64442 hypothetical
protein MJ1143 - Methanococcus jannaschii
>gi|1591775|gb|AAB99143.1| (U67556) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 361
Score = 81.1 bits (197), Expect = 1e-14
Identities = 74/269 (27%), Positives = 127/269 (46%), Gaps = 32/269 (11%)
Query: 9 IIEGIKNQTMIVEVLKALAIILFGLVVGELIRKWIISLSRST--KYVWIFNEETAKLLWR 66
I E + + T+ +L ++IILF +V+G+ I L+ K +E + L
Sbjct: 7 ISEILMHNTVYNYILSLISIILF-IVIGKYANALIERLADKLHKKSGIELDELLIRALSL 65
Query: 67 FILVASILSG-------LDTLGILEFKVYGAKISSLIGAALLF-----------YFAYLI 108
+ +A ILSG L L L+ V +++ I ++F Y A I
Sbjct: 66 PVAIAIILSGFYFGVNFLYLLPSLKTAVNEGILTAFILCVVVFFDRFLNELVERYLALTI 125
Query: 109 GRKAQDYWVAKGGADAQIKA---KVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGI 165
+K K D QI K+ + + L L+ G+ K T++A GI G+
Sbjct: 126 SKKT------KKDVDDQIVVLTKKLVRLVVWVVGLLLILSNLGYDIK--TLLAGLGIGGL 177
Query: 166 VLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRI 225
+ ++Q +++NLI+G+ + DKP +IG+ + SGIV DI + ST+IR D ++ +
Sbjct: 178 AVALASQNLVSNLIAGLIILTDKPFKIGNWITFSGGSGIVEDIGIRSTKIRATDNSIIVV 237
Query: 226 PNEKLFNSEIKNLAKYPARRVDVVVGISY 254
PN KL + I+N+ +V +G++Y
Sbjct: 238 PNSKLIDEIIQNVPSKNKWKVSTTIGVTY 266
>pir||E70387 conserved hypothetical protein aq_1013 - Aquifex aeolicus
>gi|2983516|gb|AAC07093.1| (AE000718) hypothetical
protein [Aquifex aeolicus]
Length = 436
Score = 81.1 bits (197), Expect = 1e-14
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 16/199 (8%)
Query: 73 ILSGLDTLGILEFKVYGAKISSLI-GAALLFYFAYLIGRKAQDYWVAKGGADAQIKAKVF 131
++ L+ + ILE ++ + S + G + F Y ++V D +++A F
Sbjct: 137 LVKKLERIYILETELVKISLFSFVEGIYVFFVLKYFFETLGNLFYVVYMKKDQEVEAGSF 196
Query: 132 YYTIVTLAFFLALNIAGFTGKLT--TIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKP 189
V L L+L IAG + +T V AG GI LGF QT+ N +SG + K
Sbjct: 197 RTITVNLGLLLSLLIAGVSIGITWKAAVPIAGALGIGLGFGLQTIFNNYVSGFILLLSKN 256
Query: 190 LEIGDPVEVGEYSGI------------VHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKN 237
+++GD +E+ +G V I + +T +RTWD + V IPN + +S+I N
Sbjct: 257 IKVGDYIEIEGKAGAAVGAGGDTIFGRVVSINILTTIVRTWDNVEVAIPNSEFLSSKIVN 316
Query: 238 LA-KYPARRVDVVVGISYA 255
+ P RV + G++Y+
Sbjct: 317 YSMTNPIVRVRIPFGVAYS 335
>sp|P11666|YGGB_ECOLI HYPOTHETICAL 30.9 KDA PROTEIN IN SBM-FBA INTERGENIC REGION (ORF 4)
>gi|76229|pir||QQEC4A hypothetical 30.9K protein
(sbm-fba intergenic region) - Escherichia coli
>gi|41424|emb|CAA32606.1| (X14436) ORF4 (AA 1-197)
[Escherichia coli] >gi|882453|gb|AAA69091.1| (U28377)
ORF_f286; alternate name yggB; orf4 of X14436
[Escherichia coli] >gi|1789291|gb|AAC75961.1| (AE000375)
putative transport protein [Escherichia coli K12]
Length = 286
Score = 80.8 bits (196), Expect = 2e-14
Identities = 37/122 (30%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 133 YTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEI 192
Y I+ AL G + +++A G G+ +G + Q ++NL +G+ + +P
Sbjct: 75 YGIIAFTLIAALGRVGV--QTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRA 132
Query: 193 GDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGI 252
G+ V++G +G V +++FST +RT DG ++ IPN K+ I N ++ P RR + ++G+
Sbjct: 133 GEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGV 192
Query: 253 SY 254
+Y
Sbjct: 193 AY 194
>gb|AAG20254.1| (AE005100) Vng2113c [Halobacterium sp. NRC-1]
Length = 274
Score = 80.8 bits (196), Expect = 2e-14
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Query: 129 KVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDK 188
+V T++ A AL I G + ++ AG GIV+G +A+T I +LI+G+ + +
Sbjct: 58 RVLQITVLVAAGIAALTIWGVDP--SGLLVGAGFLGIVIGTAARTTIGSLIAGLVLMVAR 115
Query: 189 PLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDV 248
P EIGD + + + G V DI V +TR+R G V IPNE + N+ I N R+ V
Sbjct: 116 PFEIGDWIALADAEGTVTDITVVNTRVRNPSGEEVVIPNENVLNATITNRTSLDRLRLSV 175
Query: 249 VVGISY 254
VG+ Y
Sbjct: 176 AVGVDY 181
>sp|Q55717|Y639_SYNY3 HYPOTHETICAL 33.2 KD PROTEIN SLR0639 >gi|7444696|pir||S76512
hypothetical protein - Synechocystis sp. (strain PCC
6803) >gi|1001627|dbj|BAA10358.1| (D64002) hypothetical
protein [Synechocystis sp.]
Length = 296
Score = 80.4 bits (195), Expect = 2e-14
Identities = 41/125 (32%), Positives = 69/125 (54%), Gaps = 2/125 (1%)
Query: 130 VFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKP 189
+ YY ++ + F L L G + +++VA G + + +G + Q +AN+ GI +
Sbjct: 78 ISYYLLLVVFFVLCLAQLGI--QTSSLVALLGASTLAIGLALQGSLANVAGGILLVLFNY 135
Query: 190 LEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVV 249
+G+ +EV GIV I + ST I T+D LV IPN+++ + I N P RR+D+V
Sbjct: 136 FRVGERIEVAGIEGIVESIEILSTTICTYDNRLVTIPNKQIIENNIINHVGKPERRIDLV 195
Query: 250 VGISY 254
+G+ Y
Sbjct: 196 IGVGY 200
>pir||F75546 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457881|gb|AAF09797.1|AE001883_3 (AE001883)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 368
Score = 80.4 bits (195), Expect = 2e-14
Identities = 39/103 (37%), Positives = 63/103 (60%)
Query: 153 LTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFS 212
L I+ G+ G+ +GF+AQ ++ANLISG+ + D+P IGD V + +Y G VH + + +
Sbjct: 169 LLPILGGLGVVGLAVGFAAQDILANLISGVTLLLDRPFRIGDWVRIRDYEGQVHGLTLRT 228
Query: 213 TRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISYA 255
TRI T D V IPN+ + + + NL R++V + ++YA
Sbjct: 229 TRIMTRDNEWVSIPNKDVAGATVVNLTAGGTLRLNVPLPLAYA 271
>pir||F81441 probable integral membrane protein Cj0238 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6967716|emb|CAB72707.1| (AL139074) putative integral
membrane protein [Campylobacter jejuni]
Length = 627
Score = 80.0 bits (194), Expect = 3e-14
Identities = 55/171 (32%), Positives = 84/171 (48%), Gaps = 10/171 (5%)
Query: 87 VYGAKISSLIGAALLFYFAYLIGRKAQDYWVAKGGADAQIKA--KVFYYTIVTLAFFLAL 144
VY I+ LI L Y L+ + AQ K G + K+ Y+ I+ +A L
Sbjct: 333 VYAVLIAWLILRMLDGYGVVLVSKLAQ-----KSGKKEVVNLIIKILYFVIIIIALLYIL 387
Query: 145 NIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGEYSGI 204
GF ++ I+A+ GI G+ + +A+ +IAN + I + FD GD VEV G
Sbjct: 388 AQLGFN--ISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGT 445
Query: 205 VHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAK-YPARRVDVVVGISY 254
V + + T IRT+D LV +PN + + IKN +K R V + +G+ Y
Sbjct: 446 VVETGLRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGY 496
>pir||A82318 conserved hypothetical protein VC0480 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654907|gb|AAF93653.1|
(AE004134) conserved hypothetical protein [Vibrio
cholerae]
Length = 287
Score = 80.0 bits (194), Expect = 3e-14
Identities = 38/122 (31%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 133 YTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEI 192
YT+ + AL+ G + ++VA G G+ +G + Q ++N +G+ + +P +
Sbjct: 81 YTLFIIVLIAALSRIGV--QTASVVAVIGAAGLAVGLALQGSLSNFAAGVLIVAFRPFKS 138
Query: 193 GDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGI 252
GD VE+G +G V I++F T +++ D +V +PN + I N +++ RRVD+V+G+
Sbjct: 139 GDYVEIGGVAGSVDSIQIFQTVLKSPDNKMVVVPNSAVIGGAITNYSRHETRRVDMVIGV 198
Query: 253 SY 254
SY
Sbjct: 199 SY 200
>pir||H82702 small conductance mechanosensitive ion channel XF1258 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106243|gb|AAF84067.1|AE003960_1 (AE003960) small
conductance mechanosensitive ion channel [Xylella
fastidiosa]
Length = 305
Score = 79.6 bits (193), Expect = 3e-14
Identities = 33/101 (32%), Positives = 61/101 (59%)
Query: 154 TTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFST 213
T++ A G TG+ +G + + ++N+ +G+ + P+ GD V + GI+ +IR+F T
Sbjct: 100 TSLAAVVGATGLAVGLALKDSLSNIAAGVMLIVLGPVRSGDHVVIAGQEGIIDEIRIFQT 159
Query: 214 RIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISY 254
R+RT+D ++ +PN + I N + P RR+++ VG+SY
Sbjct: 160 RLRTFDQRIITLPNSTITTVPIINYSTLPTRRIEITVGVSY 200
>pir||D70156 conserved hypothetical protein BB0453 - Lyme disease spirochete
>gi|2688363|gb|AAC66816.1| (AE001150) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 280
Score = 78.8 bits (191), Expect = 6e-14
Identities = 51/168 (30%), Positives = 91/168 (53%), Gaps = 13/168 (7%)
Query: 88 YGAKISSLIGAALLFYFAYLIGRKAQDYW---VAKGGADAQIKAKVF-----YYTIVTLA 139
YG K+S I +L+YF LI K + K + +++ VF ++ I+T
Sbjct: 22 YGLKVSIAI---VLWYFLKLIVSKMGKILFKTLEKSRLEEKLEVTVFNFLKSFFKILT-D 77
Query: 140 FFLALNIAGFTGKLTT-IVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEV 198
F + L I + G TT I+A G G+ +G +AQ +++N +SG + K + GD ++
Sbjct: 78 FVIVLIILPYLGVPTTSIIAVFGSLGLAIGLAAQNILSNFVSGFIVLNSKFFKCGDHIQC 137
Query: 199 GEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRV 246
G+ G+V D+++F T + T++ +++IPN KL ++ + N + RRV
Sbjct: 138 GDVEGLVADVQIFFTTLETFNKEIIKIPNSKLTSNFVVNFSSCTRRRV 185
>pir||G64642 conserved hypothetical integral membrane protein HP0983 -
Helicobacter pylori (strain 26695)
>gi|2314126|gb|AAD08029.1| (AE000607) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 274
Score = 78.0 bits (189), Expect = 1e-13
Identities = 43/163 (26%), Positives = 80/163 (48%), Gaps = 2/163 (1%)
Query: 92 ISSLIGAALLFYFAYLIGRKAQDYWVAKGGADAQIKAKVFYYTIVTLAFFLALNIAGFTG 151
I +++ + FYF++ + +K + K A A+V + I+ + +AL+ G
Sbjct: 23 IKAIVVFCIGFYFSFFLQKKTMKFLSKKDEILANFVAQVTFILILIITTIIALSTLGV-- 80
Query: 152 KLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVF 211
+ T+I+ G GI + + + ++++ GI + P + GD +E+ G V + F
Sbjct: 81 QTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALNFF 140
Query: 212 STRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISY 254
+T +R DG L +PN + NS I N RR++ V G+ Y
Sbjct: 141 NTSLRLHDGRLAVLPNRSVANSNIINSNNTACRRIEWVCGVGY 183
>pir||C83031 conserved hypothetical protein PA4925 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951203|gb|AAG08310.1|AE004905_8 (AE004905)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 283
Score = 76.9 bits (186), Expect = 2e-13
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Query: 55 IFNEETAKL--LWRFILVASILSGLDTLGILEFKVYGAKISSLIGAALLFYFAYLIGRKA 112
I N T K+ LW + + G+ L + F V G LIG A+ L +K
Sbjct: 6 IVNVGTEKINALWATVSQYAFAFGIKILAAIAFWVIGRW---LIGFAVGMVQKSLERQKV 62
Query: 113 QDYWVAKGGADAQIKAKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAA-GITGIVLGFSA 171
D + V + VTL L + I GF G TT +AA G+ +G +
Sbjct: 63 ----------DPTVLRYVGSFITVTLNVLLVVGILGFFGIQTTSLAALIAAVGLAIGMAW 112
Query: 172 QTVIANLISGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLF 231
++ANL +G F+ +P ++GD + G +G V +I +F+T I T D +L + N K+F
Sbjct: 113 SGLLANLAAGGFIIVLRPFKVGDFICAGGVTGTVKEIGLFTTAINTPDNVLTMVGNNKIF 172
Query: 232 NSEIKNLAKYPARRVDVVVGISYA 255
I+N P RRV++ +S A
Sbjct: 173 GDNIQNFTHNPFRRVELKAQLSGA 196
>pir||B71871 hypothetical protein jhp0915 - Helicobacter pylori (strain J99)
>gi|4155504|gb|AAD06504.1| (AE001521) putative
[Helicobacter pylori J99]
Length = 274
Score = 75.7 bits (183), Expect = 5e-13
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Query: 92 ISSLIGAALLFYFAYLIGRKAQDYWVAKGGADAQIKAKVFYYTIVTLAFFLALNIAGFTG 151
I +++ + FYF++ + K K A A+V + I+ + +AL+ G
Sbjct: 23 IKAIVVFCIGFYFSFFLRNKTMKLLSKKDEILANFVAQVTFILILIITTIIALSTLGV-- 80
Query: 152 KLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVF 211
+ T+I+ G GI + + + ++++ GI + P + GD +E+ G V + F
Sbjct: 81 QTTSIITVLGTVGIAVALALKDYLSSIAGGIILIILHPFKKGDIIEISGLEGKVEALNFF 140
Query: 212 STRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVDVVVGISY 254
+T +R DG L +PN + NS I N RR++ V G+ Y
Sbjct: 141 NTSLRLHDGRLAVLPNRSVANSNIINSNNTACRRIEWVCGVGY 183
>pir||B83096 conserved hypothetical protein PA4394 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950625|gb|AAG07782.1|AE004855_4 (AE004855)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 278
Score = 75.7 bits (183), Expect = 5e-13
Identities = 41/139 (29%), Positives = 70/139 (49%), Gaps = 1/139 (0%)
Query: 117 VAKGGADAQIKAKVFYYTIVTLAFFLALNIAGFTG-KLTTIVAAAGITGIVLGFSAQTVI 175
+A+ D ++ V + L L +++A G + T+ VAA G G+ +G + Q +
Sbjct: 51 LARRSVDRTLQGFVGSLVSIVLKILLVVSVASMIGIQTTSFVAAIGAAGLAIGLALQGSL 110
Query: 176 ANLISGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEI 235
AN G+ + +P ++GD +E +G V I +F T +R+ D + +PN L N +
Sbjct: 111 ANFAGGVLILLFRPFKVGDWIEAQGVAGTVDSILIFHTVLRSGDNKRIIVPNGALSNGTV 170
Query: 236 KNLAKYPARRVDVVVGISY 254
N + P R+V VGI Y
Sbjct: 171 TNYSAEPVRKVIFDVGIDY 189
>pir||A69867 conserved hypothetical protein ykuT - Bacillus subtilis
>gi|2632241|emb|CAA10883.1| (AJ222587) YkuT protein
[Bacillus subtilis] >gi|2633792|emb|CAB13294.1| (Z99111)
similar to hypothetical proteins [Bacillus subtilis]
Length = 267
Score = 75.3 bits (182), Expect = 7e-13
Identities = 34/103 (33%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Query: 130 VFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKP 189
+F YT++ + F + L++ F + ++A AGI G+ +GF AQ +++++++G F+ +K
Sbjct: 69 IFAYTLIFIFFVMVLDL--FHYDPSALLAGAGIVGLAVGFGAQGLVSDIVTGFFILLEKQ 126
Query: 190 LEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFN 232
L++GD + V + GIV + + +T+IR++D L IPN + N
Sbjct: 127 LDVGDYITVSTFDGIVEQVGLRTTQIRSFDETLHYIPNRNITN 169
>sp|O07594|YHDY_BACSU HYPOTHETICAL 42.5 KD PROTEIN IN CITA-SSPB INTERGENIC REGION
>gi|7447498|pir||G69827 conserved hypothetical protein
yhdY - Bacillus subtilis >gi|2226220|emb|CAA74509.1|
(Y14082) hypothetical protein [Bacillus subtilis]
>gi|2633299|emb|CAB12803.1| (Z99109) similar to
hypothetical proteins [Bacillus subtilis]
Length = 371
Score = 74.9 bits (181), Expect = 9e-13
Identities = 65/254 (25%), Positives = 117/254 (45%), Gaps = 21/254 (8%)
Query: 19 IVEVLKALAIILFGLVVGELIRKWIISL---------SRSTKYVWIFNEETAKLLWRFIL 69
I+++ +LAI+L L++ +L ++ +L + K V + ++ A+ W F+
Sbjct: 14 IIQIGISLAILLVFLILRKLFTRYFFNLLFNLTNRPKTEIFKQVVLAFDKPAR--WFFVA 71
Query: 70 VASILS-----GLDTLGILEFKVYGAKISSLIGAALLFYFA---YLIGRKAQDYWVAKGG 121
+ L+ LD + K+Y + I +L+ L A ++ + Q + +
Sbjct: 72 LGLFLAIRYSPFLDEQMPVISKIYRSLIVALLCWGLCNLTATSSFIFHKVNQRFELDMDD 131
Query: 122 ADAQIKAKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISG 181
A +K+ + I+ L+ +++ F + VA G+ G+ +A+ I+N G
Sbjct: 132 ILAPFLSKLLRFVIIALS--VSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGG 189
Query: 182 IFMYFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKY 241
I + +KP IGD VE +G V DI STR RT G LV +PN L I N +
Sbjct: 190 IIIITEKPFTIGDWVETSTVTGSVEDITFRSTRFRTAQGALVTVPNSTLSMEAITNWTRM 249
Query: 242 PARRVDVVVGISYA 255
R++ + +SYA
Sbjct: 250 TKRQITFSIHVSYA 263
>pir||A83006 hypothetical protein PA5121 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951419|gb|AAG08506.1|AE004925_4
(AE004925) hypothetical protein [Pseudomonas aeruginosa]
Length = 735
Score = 73.0 bits (176), Expect = 3e-12
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 130 VFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDKP 189
V + TI +A +AL G +T ++A AG+ G+ +GF AQ+++A+LI+G+F+ +
Sbjct: 505 VLFATIAVIALIVALANMGMN--VTPLLAGAGVIGLAIGFGAQSLVADLITGLFIIIEDS 562
Query: 190 LEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKY 241
L I D V+VG + G V + + + R+R DG++ IP SEIK++ Y
Sbjct: 563 LSIDDYVDVGGHLGTVEGLTIRTVRLRDLDGVVHTIP-----FSEIKSIKNY 609
>gb|AAG15196.1|AF286047_4 (AF286047) AefA [Chlorobium tepidum]
Length = 230
Score = 72.6 bits (175), Expect = 5e-12
Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 128 AKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFD 187
A + Y IV + L AG L+++ +G G+ +GF Q + N SG+ + +
Sbjct: 2 ATILQYLIVFFGILIVLQSAGID--LSSLTVLSGTIGLGIGFGLQNIADNFFSGLIILLE 59
Query: 188 KPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYP-ARRV 246
+P+++GD ++VGE +G V I + ST + T D + + IPN + + ++ N + + RV
Sbjct: 60 RPVKVGDRIQVGEINGDVVRIAIRSTTLLTNDNINIIIPNSEFVSKQVINWSHNDRSLRV 119
Query: 247 DVVVGISY 254
V VG++Y
Sbjct: 120 SVPVGVAY 127
>dbj|BAB06402.1| (AP001516) unknown conserved protein [Bacillus halodurans]
Length = 379
Score = 71.8 bits (173), Expect = 8e-12
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 128 AKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFD 187
+K+ + +V L + L A + K+ +A G+ G+ +AQ I N G+ + +
Sbjct: 145 SKMLRFIVVALTILIIL--AEWEFKIGGFIAGLGLGGLAFALAAQDTIGNFFGGVIIVTE 202
Query: 188 KPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPARRVD 247
KP GD ++ G+V DI STR+RT+ +V +PN L + I N ++ RR+
Sbjct: 203 KPFSKGDWIQTPTVEGVVEDITFRSTRVRTFADSVVTVPNSTLASEPITNWSQMRKRRIT 262
Query: 248 VVVGISYA 255
+G+ YA
Sbjct: 263 FNLGLEYA 270
>dbj|BAB06385.1| (AP001516) unknown conserved protein [Bacillus halodurans]
Length = 276
Score = 71.4 bits (172), Expect = 1e-11
Identities = 40/130 (30%), Positives = 73/130 (55%), Gaps = 5/130 (3%)
Query: 125 QIKAKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFM 184
++ F YT++ + L I G + ++A AGI G+ +GF AQ +++++++G F+
Sbjct: 65 KLSLNAFSYTLMFIFATTLLTIFGLNP--SALIAGAGIVGLAIGFGAQGLVSDIVTGFFI 122
Query: 185 YFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPAR 244
+K +++GD V G GIV ++ + + IR +DG L IPN + N + N ++ R
Sbjct: 123 LLEKQIDVGDYVTAGGVDGIVEEVGLRTALIRGFDGTLHYIPNRNIAN--VSNHSRGNMR 180
Query: 245 RVDVVVGISY 254
+ V + ISY
Sbjct: 181 AL-VDISISY 189
>pir||G69111 conserved hypothetical protein MTH1830 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622964|gb|AAB86296.1| (AE000936) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 248
Score = 69.9 bits (168), Expect = 3e-11
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Query: 125 QIKAKVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFM 184
Q+ + Y++ +A + L G +T I + GI G+ +GF+++ +I+N ISG+F+
Sbjct: 46 QVINDIIKYSVYFIAASIVLRELGID--ITAITVSLGIAGVSVGFASRDIISNFISGMFI 103
Query: 185 YFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYPAR 244
DK +GD +EV G V + +T I T + +V +PN + N R
Sbjct: 104 LADKSFRVGDTIEVAGQRGRVRKVGFRTTTIETPEAGMVTVPNSTFSKTAYVNYTAEDRR 163
Query: 245 RVDVVVGISY 254
RV++ V + Y
Sbjct: 164 RVELRVNLDY 173
>sp|O25170|Y415_HELPY HYPOTHETICAL INTEGRAL HP0415 >gi|7463936|pir||G64571 conserved
hypothetical integral membrane protein HP0415 -
Helicobacter pylori (strain 26695)
>gi|2313519|gb|AAD07481.1| (AE000557) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 623
Score = 68.7 bits (165), Expect = 7e-11
Identities = 37/128 (28%), Positives = 68/128 (52%), Gaps = 3/128 (2%)
Query: 129 KVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDK 188
KV Y+ I +A L GF ++ I+A+ GI G+ + + + V+AN + + + D
Sbjct: 367 KVVYFLIFIVALLGVLKQLGFN--VSAIIASLGIGGLAVALAVKDVLANFFASVILLLDN 424
Query: 189 PLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYP-ARRVD 247
GD + GE G V ++ + T IR +D L+ +PN +L I+N ++ RR+
Sbjct: 425 SFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVGRRIK 484
Query: 248 VVVGISYA 255
+ +G++Y+
Sbjct: 485 MEIGLTYS 492
>sp|Q9ZKG7|Y415_HELPJ HYPOTHETICAL INTEGRAL HP0415/JHP0969 >gi|7464919|pir||C71865
hypothetical protein jhp0969 - Helicobacter pylori
(strain J99) >gi|4155556|gb|AAD06551.1| (AE001526)
putative [Helicobacter pylori J99]
Length = 623
Score = 68.7 bits (165), Expect = 7e-11
Identities = 37/128 (28%), Positives = 68/128 (52%), Gaps = 3/128 (2%)
Query: 129 KVFYYTIVTLAFFLALNIAGFTGKLTTIVAAAGITGIVLGFSAQTVIANLISGIFMYFDK 188
KV Y+ I +A L GF ++ I+A+ GI G+ + + + V+AN + + + D
Sbjct: 367 KVVYFLIFIVALLGVLKQLGFN--VSAIIASLGIGGLAVALAVKDVLANFFASVILLLDN 424
Query: 189 PLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVRIPNEKLFNSEIKNLAKYP-ARRVD 247
GD + GE G V ++ + T IR +D L+ +PN +L I+N ++ RR+
Sbjct: 425 SFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRNWSRRKVGRRIK 484
Query: 248 VVVGISYA 255
+ +G++Y+
Sbjct: 485 MEIGLTYS 492
>pir||B83018 conserved hypothetical protein PA5022 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951310|gb|AAG08407.1|AE004915_2 (AE004915)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 1118
Score = 68.3 bits (164), Expect = 9e-11
Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 24/211 (11%)
Query: 63 LLWRFILVASILSGLDTLGILEFKVYGAKISSLIGAALLFYFAYL--------IGRKA-- 112
L W + + S++S LD + + ++ + ++ + +L + A L + R
Sbjct: 792 LYWVWADLISVISYLDNVTLYQYTAGTGEAATSVPISLRDFLAALAIAVVTVALARNLPG 851
Query: 113 -------QDYWVAKGGADAQIKAKVFYYTIVTLAFFLALNIAGFT-GKLTTIVAAAGITG 164
Q +A+G A A + Y I + AL+ G + KL +VAA +
Sbjct: 852 LLEVLVLQRLTLAQGSAYAT--TTLLSYAISGIGIVSALSTLGVSWDKLQWLVAALSVG- 908
Query: 165 IVLGFSAQTVIANLISGIFMYFDKPLEIGDPVEVGEYSGIVHDIRVFSTRIRTWDGLLVR 224
LGF Q + +N +SG+ + F++P+ IGD V +G SG V IR+ +T I +D +
Sbjct: 909 --LGFGLQAIFSNFVSGLIILFERPVRIGDVVTIGNLSGTVSRIRIRATTITDFDRKEII 966
Query: 225 IPNEKLFNSEIKNLA-KYPARRVDVVVGISY 254
+PN+ ++ N + RV + +G++Y
Sbjct: 967 VPNQTFITGQLVNWSLSDTVTRVTIKIGLAY 997
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.143 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83745877
Number of Sequences: 2977
Number of extensions: 3245304
Number of successful extensions: 12026
Number of sequences better than 1.0e-10: 37
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 11998
Number of HSP's gapped (non-prelim): 38
length of query: 255
length of database: 189,106,746
effective HSP length: 53
effective length of query: 202
effective length of database: 157,386,935
effective search space: 31792160870
effective search space used: 31792160870
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)