BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1282 (PAB1282) DE:Hypothetical protein
         (191 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75011 hypothetical protein PAB1282 - Pyrococcus abyssi (st...   384  e-106
pir||F71140 hypothetical protein PH0337 - Pyrococcus horikoshii ...   245  3e-64

>pir||C75011 hypothetical protein PAB1282 - Pyrococcus abyssi (strain Orsay)
           >gi|5459043|emb|CAB50529.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 191
           
 Score =  384 bits (976), Expect = e-106
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MKKRILLVVITLLLSISLGYSLGNFTDVAKSKGNTITTGEFDIRISKDGKRFYDETKILD 60
           MKKRILLVVITLLLSISLGYSLGNFTDVAKSKGNTITTGEFDIRISKDGKRFYDETKILD
Sbjct: 1   MKKRILLVVITLLLSISLGYSLGNFTDVAKSKGNTITTGEFDIRISKDGKRFYDETKILD 60

Query: 61  ISGLKPGDVSEVTFYVKNYGDIPVSNLTMVIKVRDYEEDFSPAEEQYDLTDEEGELSKCL 120
           ISGLKPGDVSEVTFYVKNYGDIPVSNLTMVIKVRDYEEDFSPAEEQYDLTDEEGELSKCL
Sbjct: 61  ISGLKPGDVSEVTFYVKNYGDIPVSNLTMVIKVRDYEEDFSPAEEQYDLTDEEGELSKCL 120

Query: 121 YVEAIYVNGTNVLSNPTPLYKLANKEIKLYSGSLPEDAMIPVRIIFNLPKNVGNECMTDG 180
           YVEAIYVNGTNVLSNPTPLYKLANKEIKLYSGSLPEDAMIPVRIIFNLPKNVGNECMTDG
Sbjct: 121 YVEAIYVNGTNVLSNPTPLYKLANKEIKLYSGSLPEDAMIPVRIIFNLPKNVGNECMTDG 180

Query: 181 CEIVVKVIGTQ 191
           CEIVVKVIGTQ
Sbjct: 181 CEIVVKVIGTQ 191


>pir||F71140 hypothetical protein PH0337 - Pyrococcus horikoshii
           >gi|3256728|dbj|BAA29411.1| (AP000002) 210aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 210
           
 Score =  245 bits (619), Expect = 3e-64
 Identities = 115/191 (60%), Positives = 146/191 (76%)

Query: 1   MKKRILLVVITLLLSISLGYSLGNFTDVAKSKGNTITTGEFDIRISKDGKRFYDETKILD 60
           MKKR+  +++ LL+  SL     NF DVAKSKGN +++GEF+I+ISKDG+RFYD+TK+ +
Sbjct: 20  MKKRVAYIILALLILFSLKIGASNFIDVAKSKGNILSSGEFNIKISKDGQRFYDDTKVFE 79

Query: 61  ISGLKPGDVSEVTFYVKNYGDIPVSNLTMVIKVRDYEEDFSPAEEQYDLTDEEGELSKCL 120
           +  L PGDV E   YVKNYG++PVSN+++ I VRDYEED SPAEE YDLT EEGELSKCL
Sbjct: 80  LKELVPGDVKEFNMYVKNYGNVPVSNISIFIFVRDYEEDLSPAEEPYDLTPEEGELSKCL 139

Query: 121 YVEAIYVNGTNVLSNPTPLYKLANKEIKLYSGSLPEDAMIPVRIIFNLPKNVGNECMTDG 180
           YV+ IYVNGTNVLS    L +LA KEIKL+SG L E  +IPV+ +    K+ GNECMTD 
Sbjct: 140 YVDGIYVNGTNVLSKSMRLSELAGKEIKLFSGKLKEKEIIPVKFVVRFSKDAGNECMTDR 199

Query: 181 CEIVVKVIGTQ 191
            E+++KV+ TQ
Sbjct: 200 TEVLIKVVATQ 210


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.138    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74269239
Number of Sequences: 2977
Number of extensions: 3282045
Number of successful extensions: 8665
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8663
Number of HSP's gapped (non-prelim): 2
length of query: 191
length of database: 189,106,746
effective HSP length: 56
effective length of query: 135
effective length of database: 155,591,474
effective search space: 21004848990
effective search space used: 21004848990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 162 (67.5 bits)