BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1283 (PAB1283) DE:Hypothetical protein
(332 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75011 hypothetical protein PAB1283 - Pyrococcus abyssi (st... 663 0.0
pir||G71140 hypothetical protein PH0338 - Pyrococcus horikoshii ... 552 e-156
sp|O26820|Y724_METTH HYPOTHETICAL PROTEIN MTH724 >gi|7482247|pir... 157 2e-37
gi|11498856 conserved hypothetical protein [Archaeoglobus fulgid... 147 2e-34
sp|Q58120|Y710_METJA HYPOTHETICAL PROTEIN MJ0710 >gi|2128028|pir... 123 4e-27
emb|CAC12537.1| (AL445067) conserved hypothetical protein [Therm... 123 4e-27
pir||H71091 hypothetical protein PH0997 - Pyrococcus horikoshii ... 104 1e-21
pir||B72569 hypothetical protein APE1835 - Aeropyrum pernix (str... 102 6e-21
gb|AAK41306.1| Conserved hypothetical protein [Sulfolobus solfat... 100 4e-20
pir||G75073 hypothetical protein PAB1719 - Pyrococcus abyssi (st... 95 1e-18
sp|P05409|YNI1_METTL HYPOTHETICAL PROTEIN IN NIFH2 5'REGION >gi|... 90 3e-17
gb|AAG20364.1| (AE005110) Vng2242c [Halobacterium sp. NRC-1] 90 3e-17
>pir||B75011 hypothetical protein PAB1283 - Pyrococcus abyssi (strain Orsay)
>gi|5459042|emb|CAB50528.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 332
Score = 663 bits (1691), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MVLMFYVEILGLLPEMAEAEVKALAELRNGTIKERDYLLVVGNVENVEIFERLGLAHEYG 60
MVLMFYVEILGLLPEMAEAEVKALAELRNGTIKERDYLLVVGNVENVEIFERLGLAHEYG
Sbjct: 1 MVLMFYVEILGLLPEMAEAEVKALAELRNGTIKERDYLLVVGNVENVEIFERLGLAHEYG 60
Query: 61 ILLGSGDDVRDILDLVRGLEWKEIIKGTFAVRKEVMVNCAHEVKNLEKIIGGIIHSQGLR 120
ILLGSGDDVRDILDLVRGLEWKEIIKGTFAVRKEVMVNCAHEVKNLEKIIGGIIHSQGLR
Sbjct: 61 ILLGSGDDVRDILDLVRGLEWKEIIKGTFAVRKEVMVNCAHEVKNLEKIIGGIIHSQGLR 120
Query: 121 VNLSKPDTIIKVYCGRKLWIGIRIREFRGKEFDERKADRRPFSRPIALPPRIARAMVNLT 180
VNLSKPDTIIKVYCGRKLWIGIRIREFRGKEFDERKADRRPFSRPIALPPRIARAMVNLT
Sbjct: 121 VNLSKPDTIIKVYCGRKLWIGIRIREFRGKEFDERKADRRPFSRPIALPPRIARAMVNLT 180
Query: 181 RATREILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDAT 240
RATREILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDAT
Sbjct: 181 RATREILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDAT 240
Query: 241 KIKEAFPGKTFEAIATDPPYGTSTTLPMDRDELYKRALESMYSVLEGRLAIAFPSDFDAL 300
KIKEAFPGKTFEAIATDPPYGTSTTLPMDRDELYKRALESMYSVLEGRLAIAFPSDFDAL
Sbjct: 241 KIKEAFPGKTFEAIATDPPYGTSTTLPMDRDELYKRALESMYSVLEGRLAIAFPSDFDAL 300
Query: 301 DVAETIGFKVIGRFYQRVHSSLSRYFYIMEAR 332
DVAETIGFKVIGRFYQRVHSSLSRYFYIMEAR
Sbjct: 301 DVAETIGFKVIGRFYQRVHSSLSRYFYIMEAR 332
>pir||G71140 hypothetical protein PH0338 - Pyrococcus horikoshii
>gi|3256729|dbj|BAA29412.1| (AP000002) 329aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 329
Score = 552 bits (1406), Expect = e-156
Identities = 259/328 (78%), Positives = 304/328 (91%)
Query: 3 LMFYVEILGLLPEMAEAEVKALAELRNGTIKERDYLLVVGNVENVEIFERLGLAHEYGIL 62
+ +YVEILG LPEM +AEV+ALAEL G +++ DYLLV G+V+++ +FERLGLAHEYG+L
Sbjct: 1 MFYYVEILGTLPEMGKAEVEALAELGVGNVEKVDYLLVSGSVKHIGVFERLGLAHEYGLL 60
Query: 63 LGSGDDVRDILDLVRGLEWKEIIKGTFAVRKEVMVNCAHEVKNLEKIIGGIIHSQGLRVN 122
L GDD++DILD +GLEW+ II GTFAVR+E M NC HEV +L+K IGGIIHSQGLRVN
Sbjct: 61 LYEGDDIKDILDFAKGLEWRNIINGTFAVRRERMRNCMHEVNDLDKKIGGIIHSQGLRVN 120
Query: 123 LSKPDTIIKVYCGRKLWIGIRIREFRGKEFDERKADRRPFSRPIALPPRIARAMVNLTRA 182
LS+PDT+++VYCG K+W+GIRIREF+GKEF++RKADRRPFSRPIALPPRIARAMVNLT+A
Sbjct: 121 LSRPDTVVRVYCGNKIWLGIRIREFKGKEFEDRKADRRPFSRPIALPPRIARAMVNLTKA 180
Query: 183 TREILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDATKI 242
TRE+LDPFMGTGGMLIEAGL+GLKVYG+DIREDMVEGAKINLEYYG++DYVVKVGDATKI
Sbjct: 181 TREVLDPFMGTGGMLIEAGLIGLKVYGLDIREDMVEGAKINLEYYGIRDYVVKVGDATKI 240
Query: 243 KEAFPGKTFEAIATDPPYGTSTTLPMDRDELYKRALESMYSVLEGRLAIAFPSDFDALDV 302
+E FPGKTFEA+ATDPPYG STTLPMDR+ELYKR+LES++SVLEGRLAIAFP+DFDA DV
Sbjct: 241 EEVFPGKTFEAVATDPPYGNSTTLPMDRNELYKRSLESIHSVLEGRLAIAFPADFDARDV 300
Query: 303 AETIGFKVIGRFYQRVHSSLSRYFYIME 330
AE+IGFKV+GRFYQRVHSSLSRYFY+ME
Sbjct: 301 AESIGFKVLGRFYQRVHSSLSRYFYVME 328
>sp|O26820|Y724_METTH HYPOTHETICAL PROTEIN MTH724 >gi|7482247|pir||G69196 conserved
hypothetical protein MTH724 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621813|gb|AAB85229.1| (AE000852) methyltransferase
related protein [Methanobacterium thermoautotrophicum]
Length = 336
Score = 157 bits (392), Expect = 2e-37
Identities = 103/287 (35%), Positives = 163/287 (55%), Gaps = 13/287 (4%)
Query: 51 ERLGLAHEYGILLGSGDDVRDILDLVRGLEWKEIIKGTFAVRKEVMVNCAHEVKNLEKII 110
+RL AHE ++G D+ D ++W + ++ +FAVR + + + LE+ I
Sbjct: 54 KRLAYAHEISEVIGYAA-ADDLDDAAEEIDWSKYVRESFAVRIRKLCGDV-DSRTLERTI 111
Query: 111 GGIIHSQ-GLRVNLSKPDTIIK-VYCGRKLWIGIRIREFRGKEFDERKADRRPFSRPIAL 168
G II GL+V+L KP T+I+ V + + R+ + F++ + +RPF P ++
Sbjct: 112 GAIIKEDTGLKVDLEKPWTLIRPVLINDRFILTRRLAVISKEHFNQARPHKRPFFYPGSM 171
Query: 169 PPRIARAMVNLT--RATREILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEY 226
P++AR MVNL+ +A ILDPF GTGG+LIEAGLMG++V G DI MVEG + NL++
Sbjct: 172 SPKLARCMVNLSGVKAGDRILDPFCGTGGILIEAGLMGVRVVGADIDWRMVEGTRENLQH 231
Query: 227 YGVKDYVVKVGDATKIKEAFPGKTFEAIATDPPYGTSTTLPMDRDE-LYKRALESMYSVL 285
YG+ D+ V DA ++ + +AI TDPPYG S + ++ E LY+ L+S +S L
Sbjct: 232 YGITDFEVIRSDARDLR---LDEKVDAIVTDPPYGISASTAGEKSEKLYREFLDSAHSNL 288
Query: 286 E--GRLAIAFPSDFDALDVAETIGFKVIGRFYQRVHSSLSRYFYIME 330
G + +A P D + + F + R+ R+H SL+R ++E
Sbjct: 289 AEGGMICMAAPHYLDLESLIDE-RFSIRERYSMRMHRSLTRVIRVIE 334
>gi|11498856 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3183242|sp|O29011|YC57_ARCFU HYPOTHETICAL PROTEIN
AF1257 >gi|7483105|pir||H69406 conserved hypothetical
protein AF1257 - Archaeoglobus fulgidus
>gi|2649321|gb|AAB89985.1| (AE001017) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 320
Score = 147 bits (367), Expect = 2e-34
Identities = 116/345 (33%), Positives = 176/345 (50%), Gaps = 43/345 (12%)
Query: 1 MVLMFYVEILGLLPEMAEAEVKALAELRNGTIKERDY--LLVVGNVENVEIFERLGLAHE 58
M +FY+ L E+A EV LAE R G +++ + L++ + + FERL +E
Sbjct: 1 MKFLFYLSADNL--EIARKEVLVLAE-RYGWVEDYQFEERLLLLDYAGEKFFERLAYTNE 57
Query: 59 YGILLGSGDDVRDILDLVRGLEWKEIIKGTFAVRKEVMVN---CAHEVKN------LEKI 109
V I D+ E +++ E+ V C VK LE+
Sbjct: 58 ----------VTKIYDICSVSELEQVFS-------EIPVYDRLCCVRVKGGKGKTALERK 100
Query: 110 IGGIIHSQGLRVNLSKPDTIIKVYC-GRKLWIGIRIREFRGKEFDERKADRRPFSRPIAL 168
+G ++ +G +V++S P+ + KVY K ++G+ E ++F R+ DRRPF P A+
Sbjct: 101 LGALLWKRGAKVSVSNPEIVYKVYIQDDKCYVGLLEFERDTRQFFLRRPDRRPFLMPSAI 160
Query: 169 PPRIARAMVNLTRATR--EILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEY 226
P++ARA+VNLT +LDP GTG LIEAGLMG+ GID E +V G ++NLEY
Sbjct: 161 KPKLARALVNLTGVLEGETLLDPMCGTGSFLIEAGLMGINPIGIDFIEKIVRGCRVNLEY 220
Query: 227 YGVKDYVVKVGDATKIKEAFPGKTFEAIATDPPYGTSTTLPMDRDELYKRALESMYSVLE 286
YG++ V+ +GDA + ++ IATD PY ST DELY + E VL+
Sbjct: 221 YGIEGSVL-LGDAKNL--PLRDESVRGIATDYPYLRSTKAAGTLDELYSKTSEEFERVLK 277
Query: 287 --GRLAIAFPSDFDALDVAETIGFKVIGRFYQRVHSSLSRYFYIM 329
GR AI D ++ F++ + +RVH SL+R Y++
Sbjct: 278 KGGRAAIVTNIDVESF----FSNFEIEMKTEERVHGSLTRRIYLL 318
>sp|Q58120|Y710_METJA HYPOTHETICAL PROTEIN MJ0710 >gi|2128028|pir||F64388 hypothetical
protein homolog MJ0710 - Methanococcus jannaschii
>gi|1591426|gb|AAB98704.1| (U67517) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 351
Score = 123 bits (305), Expect = 4e-27
Identities = 93/279 (33%), Positives = 144/279 (51%), Gaps = 29/279 (10%)
Query: 67 DDVRDILDLVRGLEWKEIIKG-TFAVR-----KEVMVNCAHEVKNLEKIIGGIIHSQ-GL 119
D + D V +++ +I + ++AVR K+ ++ +EK IGGII +
Sbjct: 81 DFINSFKDFVANIDYPDIDESKSYAVRVLKLHKDEFTKSIDSLR-IEKEIGGIIKLKTNA 139
Query: 120 RVNLSKPDTIIKVYCGRKLWIGIRIREFRGKE-FDERKADRRPFSRPIALPPRIARAMVN 178
+VNL+KPD +++V + + E R +E F + + R + P + P++ARAMVN
Sbjct: 140 KVNLTKPDILVRVVILENTFFISNVLEMRDREYFQKNRPHLRKYFHPGCMLPKLARAMVN 199
Query: 179 LTRATRE--ILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEYYGVKDYVVKV 236
L R +LDPF GTGG LIEAGL+G K+ G DI M G INLE Y + D V+KV
Sbjct: 200 LARVKEGDIVLDPFCGTGGFLIEAGLIGAKLIGCDIDWRMASGTLINLEEYNLLDKVIKV 259
Query: 237 G--DATKIKEAFPGKTFE---AIATDPPYGTSTTLPMDRDELYKRALESMYSVLE--GRL 289
DA +KE E AI TDPPYG ST + E+ ++ LE++ V++ G
Sbjct: 260 KRLDAKYVKEFLNELNIEKVDAIVTDPPYGISTA---KKGEI-EKILETLPEVIKDNGYF 315
Query: 290 AIAFPSDFDALDVAETIGFKVIGRFYQRVHSSLSRYFYI 328
A+P + + ++ G + +H L R+ ++
Sbjct: 316 VFAYPKKIE-------LDMELEGLYKVYIHKGLIRHIHV 347
>emb|CAC12537.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 313
Score = 123 bits (305), Expect = 4e-27
Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 9/223 (4%)
Query: 107 EKIIGGIIHSQGLRVNLSKPDTIIKVYCGRKLWIGIRIREFRGKEFDERKADRRPFSRPI 166
E IG ++ ++G RV+ PD +++V ++ + E K+F ERKA RRPF P+
Sbjct: 90 EAAIGDMLKARG-RVSFRDPDYVVRVVHHGIFYVTKVVYERDKKQFIERKAPRRPFFSPV 148
Query: 167 ALPPRIARAMVNLT--RATREILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINL 224
++ P+ AR +VN R + ++DPF GTGG+LIEA LMG++V G D+ M GA+ NL
Sbjct: 149 SMDPKYARFLVNTAHVRENQLLIDPFCGTGGILIEAALMGIRVIGNDVALSMAAGARTNL 208
Query: 225 EYYGVKDYVVKVGDATKIKEAFPGKTFEAIATDPPYGTSTTLPMDRDELYKRALESMYSV 284
+++ V+D+ + D + + P + + IATD PYG ++ D + LY+R+ + +
Sbjct: 209 KHFHVEDFHIYNMDVSDL----PVRDVDGIATDMPYGRNSYASEDLEVLYERSFRKFHEM 264
Query: 285 LEGRLAIAF-PSDFDALDVAETIGFKVIGRFYQRVHSSLSRYF 326
L+ +F SD D ++A F ++ H SL+R+F
Sbjct: 265 LKPHGYASFVVSDPDLAELARPF-FNIVHDVPVYQHRSLTRHF 306
>pir||H71091 hypothetical protein PH0997 - Pyrococcus horikoshii
>gi|3257411|dbj|BAA30094.1| (AP000004) 374aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 374
Score = 104 bits (258), Expect = 1e-21
Identities = 109/356 (30%), Positives = 170/356 (47%), Gaps = 54/356 (15%)
Query: 6 YVEILGLLPEMAEAEVKALAE-LRNGT--IKERDY-----LLVVGNVENVEIFER-LGLA 56
Y ILG PE++ E+KA + R G ++ER Y ++ E++E + R +G +
Sbjct: 4 YAVILGKNPELSLVELKAFSRRFRLGVRILEERIYGSNKSFAIIQAKEDIEKYFRWIGGS 63
Query: 57 HEYGILLGSG-DDVRDI----LDLV----RGLEWKEIIKGTFAVRKEVMVNCAHEVKNLE 107
+ L+G G D +RD+ L V R ++WKE + + KEV K +
Sbjct: 64 LKLVRLIGEGVDSIRDLEYSKLFTVSVYGRRVDWKEWRRFGSMI-KEVFKE-KDSAKFFK 121
Query: 108 KIIGGIIHSQGLRVNLSKPDTIIKVYCGRKLWIGIRIREFRGKEFDERKAD-RRPFSRP- 165
+ S+ + K ++ ++ K+ +G +R F+ +K D RP RP
Sbjct: 122 PANTYAMPSELILKGFPKVKDVVLLFVDDKVLVGETVRVT--DPFELKKLDVERPVVRPT 179
Query: 166 IALPPRIARAMVNLTRATR-EILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINL 224
I++PPR+AR MVNL+ R +LDPF GTG +++E L GL YG DI E V AK N+
Sbjct: 180 ISIPPRLARVMVNLSEIRRGNVLDPFCGTGTIVMELTLQGLNAYGTDIEEGRVRDAKKNI 239
Query: 225 EY----YGVKDY-VVKVGDATKIKEAFPGKTFEAIATDPPYGTSTTLPMDR--------- 270
++ + ++ Y V+KV D ++++ FP F+AI T+P G R
Sbjct: 240 DWLRKEFRIRKYPVLKVCDVRRLRKCFPRTRFDAIITEPYMGKPLKYKPSRGEAIKIAKG 299
Query: 271 -DELYKRALESMYSVLEGRLAIAFPSDFDALDVA------------ETIGFKVIGR 313
D LY +A ES VL+ I F F A ++ E +GFKV+ R
Sbjct: 300 LDRLYYQAFESFADVLKRGSIIVFV--FPAFSLSNGEVYRRNRPWLEELGFKVLYR 353
>pir||B72569 hypothetical protein APE1835 - Aeropyrum pernix (strain K1)
>gi|5105526|dbj|BAA80839.1| (AP000062) 350aa long
hypothetical protein [Aeropyrum pernix]
Length = 350
Score = 102 bits (252), Expect = 6e-21
Identities = 101/344 (29%), Positives = 158/344 (45%), Gaps = 29/344 (8%)
Query: 5 FYVEILGLLPEMAEAEVKALAELRNGTIKERDYL--LVVGNVENVE---IFERLGLAHEY 59
FY + G P ++ E+KA+ ++ + K +L L + + E + I R E
Sbjct: 4 FYAILSGESPTLSLEELKAILDVESRLYKVEGFLDGLAIFHAEIDDPMLITSRAAFIKEV 63
Query: 60 GILLG---SGDDVRD--ILDLVRGLEWKEIIKGT--FAVRKEVMVNCAH--EVKNLEKII 110
G+ LG S D + D + LE ++ G F + E H ++ L I
Sbjct: 64 GLPLGLYRSSDTCASKVVYDTLTFLE-ASVLDGDKEFWIDVETRGPYRHSLDLAGLRSRI 122
Query: 111 GGIIHSQGLRVNLSKPDTIIKVYCGR-KLWIGIRIREFRGKEFDERKADRRPFSRPIALP 169
+G +++ + ++++ + +G+ + G+ F ER RRPF +P L
Sbjct: 123 ASEAGKKGFKLSKRRAALNLRIFATEGAMMLGVTLSRLEGRSFIERSPGRRPFFKPGPLS 182
Query: 170 PRIARAMVNLTRATR--EILDPFMGTGGMLIEAGLMGL-KVYGIDIREDMVEGAKINLEY 226
PR++RA VNL+R R DPF GTGG IEA L+G ++ D+ MV G +NL
Sbjct: 183 PRLSRAFVNLSRLQRGGSFADPFCGTGGFAIEACLLGASRIACGDLDWAMVRGGPLNLSR 242
Query: 227 Y---GVKDYVVKVGDATKIKEAFPGKTFEAIATDPPYGTSTTL-PMDRDELYKRALESMY 282
Y G+ Y +A K+ + ++IATDPPYG STT M L + L +
Sbjct: 243 YCPPGIWFY--SAWNAAKL--PLSSNSVDSIATDPPYGRSTTTGRMGYLSLTRAFLNTAV 298
Query: 283 SVL--EGRLAIAFPSDFDALDVAETIGFKVIGRFYQRVHSSLSR 324
VL EG + A P+ +AE G +V+ VH SL+R
Sbjct: 299 EVLRSEGWIVYAGPTRMSPETLAEDAGLRVVKVIEMFVHGSLTR 342
>gb|AAK41306.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 314
Score = 99.8 bits (245), Expect = 4e-20
Identities = 92/319 (28%), Positives = 150/319 (46%), Gaps = 30/319 (9%)
Query: 23 ALAELR---NGTIKERDYLLVVGNVENV--EIFERLGLAHEYGILLGSGDDVRDILDLVR 77
+LAELR N E +Y V E +I R G L+ DD + I +++R
Sbjct: 17 SLAELRALLNDDNAEINYFTGVAIFEGNKGDIANRSARIKRSGELVYISDDPKKINEMLR 76
Query: 78 GLEWKEIIKGTFAVRKEVMVNCAHEVKNLEKIIGGIIHSQGLRVNLSKPDTIIKVYCGRK 137
G G F ++++V++ + N I + V +SK I +
Sbjct: 77 G--------GCFWIKEDVIMGSQKDKLN------AINYEIKRGVKVSKECEKIDIILTDG 122
Query: 138 LWIGIRIR-EFRGKEFDERKADRRPFSRPIALPPRIARAMVNLTRATREILDPFMGTGGM 196
+ I +I+ + K E +++PFS+ + P +R +VNL+R +E+LDPF+GTG +
Sbjct: 123 VIILGKIKGQIDSKSLHEH--EKKPFSQSGTMNPETSRLLVNLSRPKKEVLDPFVGTGSI 180
Query: 197 LIEAGLMGLKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDATKIKEAFPGKTFEAIAT 256
LIEA + + G D+ + M++ KINL Y+ ++ AT + P + +IAT
Sbjct: 181 LIEARWLNYECIGSDLDKAMLQKTKINLNYFNYYCSLL-FSSATNL----PFRQITSIAT 235
Query: 257 DPPYGTST-TLPMDRDELYKRALESMYSVLE--GRLAIAFPSDFDALDVAETIGFKVIGR 313
DPPYG ST + +LY+ S L G L A S F+ +D + F + G
Sbjct: 236 DPPYGRSTKNKGAELTQLYEEFFSSASETLTKGGFLVFATDSRFNFIDKLKENSFIIKGL 295
Query: 314 FYQRVHSSLSRYFYIMEAR 332
Y H SL+R Y+++ +
Sbjct: 296 HYLYSHKSLTRAIYVVQKK 314
>pir||G75073 hypothetical protein PAB1719 - Pyrococcus abyssi (strain Orsay)
>gi|5458404|emb|CAB49892.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 373
Score = 94.8 bits (232), Expect = 1e-18
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 32/217 (14%)
Query: 129 IIKVYCGRKLWIGIRIREFRGKEFDERKAD-RRPFSRP-IALPPRIARAMVNLTRATR-E 185
++ ++ ++ +G +R F+ +K D RP RP I++PPR+AR MVNL+ R
Sbjct: 143 VVFMFLNDRVLVGETVR--LSDPFELKKLDVERPVVRPTISIPPRLARIMVNLSEIRRGN 200
Query: 186 ILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEY----YGVKDY-VVKVGDAT 240
+LDPF GTG +++E L GL YG DI ++ + AK N+E+ + V+ Y ++V D
Sbjct: 201 VLDPFCGTGTIIMELTLQGLNAYGSDISQERILEAKQNVEWLRREFKVEKYPSLRVCDVR 260
Query: 241 KIKEAFPGKTFEAIATDPPYG----------TSTTLPMDRDELYKRALESMYSVLE--GR 288
K+++ FP F AI T+P G + TL D LY +A ES V + +
Sbjct: 261 KLRKCFPRTRFNAIITEPYMGKALKSKLTFKEAETLGRKLDRLYYQAFESFSDVSKRNSK 320
Query: 289 LAIAFPSDFDALDVA---------ETIGFKVIGRFYQ 316
+ FP+ F+ +D + E +GFKVI R +
Sbjct: 321 VVFVFPA-FNLVDGSVYRRERQWLEDLGFKVITRILE 356
>sp|P05409|YNI1_METTL HYPOTHETICAL PROTEIN IN NIFH2 5'REGION >gi|80957|pir||S00737
hypothetical protein 1 - Methanococcus
thermolithotrophicus (fragment)
>gi|44620|emb|CAA30380.1| (X07500) ORF (AA 1-162)
[Methanococcus thermolithotrophicus]
Length = 162
Score = 90.1 bits (220), Expect = 3e-17
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 16/165 (9%)
Query: 171 RIARAMVNLTRATRE--ILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEYYG 228
++A +VNL+R + +LDPF GTGG LIE G MGLK+ G DI +DMV G +NL+ Y
Sbjct: 1 KLAMCLVNLSRLKKGDVLLDPFCGTGGFLIEGGFMGLKLIGSDIDDDMVNGTLLNLKSYN 60
Query: 229 VKDYVVKV-----GDATKIKEAFPGKTFEAIATDPPYGTSTTLPMDRDELYKRALESMYS 283
+ ++++ + GD + K + I TDPPYG ST+ + +E++ ++
Sbjct: 61 LTEHIISIKKWNAGDIKSFLKQLNVKYVDGIVTDPPYGISTSAKGNIEEIF----NNLGD 116
Query: 284 VLEGRLAIAFPSDFDALDVAETIGFKVIGRFYQRVHSSLSRYFYI 328
VL+ + F S + +++ + +H SL+RY ++
Sbjct: 117 VLKKDGYLVFASSRKI-----NLDLELMEMYELYIHKSLTRYIHV 156
>gb|AAG20364.1| (AE005110) Vng2242c [Halobacterium sp. NRC-1]
Length = 161
Score = 90.1 bits (220), Expect = 3e-17
Identities = 61/165 (36%), Positives = 84/165 (49%), Gaps = 8/165 (4%)
Query: 168 LPPRIARAMVNLTRATR--EILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLE 225
+ P +ARA NL R T +LDP GTGG+LIEAGL+G G D + M GA+ NL
Sbjct: 1 MDPLLARAACNLARVTPGDRVLDPMCGTGGVLIEAGLLGAHPIGTDAQAKMAAGARRNLT 60
Query: 226 YYGVKDYVVKVGDATKIKEAFPGKTFEAIATDPPYGTSTTLPM-DRDELYKRALESMYSV 284
+Y V D DAT + P + +A D PYG + + D +L AL+ + V
Sbjct: 61 HY-VDDATTGRADATAL--PLPSDSIDAAVLDAPYGRQSKIATHDLADLVGGALDELARV 117
Query: 285 LEGRLAIAFPSDFDALDVAETIGFKVIGRFYQRVHSSLSRYFYIM 329
GR + D+ A A G+ V RF +RVH SL R+ ++
Sbjct: 118 TAGRCVLVADRDWRA--EATAAGWTVDARFQRRVHRSLVRHVLVL 160
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122110966
Number of Sequences: 2977
Number of extensions: 5147312
Number of successful extensions: 11552
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 11524
Number of HSP's gapped (non-prelim): 12
length of query: 332
length of database: 189,106,746
effective HSP length: 54
effective length of query: 278
effective length of database: 156,788,448
effective search space: 43587188544
effective search space used: 43587188544
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)