BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1285 (PAB1285) DE:Hypothetical protein
(171 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75010 hypothetical protein PAB1285 - Pyrococcus abyssi (st... 366 e-101
pir||D71141 hypothetical protein PH0343 - Pyrococcus horikoshii ... 309 1e-83
pir||G64499 hypothetical protein MJ1600 - Methanococcus jannasch... 161 5e-39
pir||A69211 conserved hypothetical protein MTH832 - Methanobacte... 139 2e-32
gi|11499329 conserved hypothetical protein [Archaeoglobus fulgid... 138 3e-32
emb|CAC11255.1| (AL445063) conserved hypothetical membrane prote... 127 7e-29
emb|CAB57527.1| (Y18930) hypothetical protein [Sulfolobus solfat... 123 1e-27
gb|AAK41073.1| Conserved hypothetical protein [Sulfolobus solfat... 123 1e-27
pir||C72737 hypothetical protein APE0433 - Aeropyrum pernix (str... 113 1e-24
gb|AAG20259.1| (AE005101) Vng2119c [Halobacterium sp. NRC-1] 101 8e-21
>pir||H75010 hypothetical protein PAB1285 - Pyrococcus abyssi (strain Orsay)
>gi|5459040|emb|CAB50526.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 171
Score = 366 bits (930), Expect = e-101
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MHEMNPIFEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGIT 60
MHEMNPIFEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGIT
Sbjct: 1 MHEMNPIFEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGIT 60
Query: 61 VGTVVGTIQHLMFPGYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLD 120
VGTVVGTIQHLMFPGYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLD
Sbjct: 61 VGTVVGTIQHLMFPGYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLD 120
Query: 121 QWGFLISALCFAYPLRTIPTGEVLFLLVVTPVIHWLANVFAYRMKWKNVPW 171
QWGFLISALCFAYPLRTIPTGEVLFLLVVTPVIHWLANVFAYRMKWKNVPW
Sbjct: 121 QWGFLISALCFAYPLRTIPTGEVLFLLVVTPVIHWLANVFAYRMKWKNVPW 171
>pir||D71141 hypothetical protein PH0343 - Pyrococcus horikoshii
>gi|3256734|dbj|BAA29417.1| (AP000002) 170aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 170
Score = 309 bits (784), Expect = 1e-83
Identities = 137/169 (81%), Positives = 155/169 (91%)
Query: 3 EMNPIFEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGITVG 62
+MN + EAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRI GDGKTWRGFFGG+ VG
Sbjct: 2 KMNQLLEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRILGDGKTWRGFFGGLIVG 61
Query: 63 TVVGTIQHLMFPGYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLDQW 122
T++G +Q+ + P YYGSL +A+ +AFLLSLG LVGDLIGSFIKRRLNMPRGYPAVGLDQW
Sbjct: 62 TIIGIVQYFLLPEYYGSLGIAIELAFLLSLGTLVGDLIGSFIKRRLNMPRGYPAVGLDQW 121
Query: 123 GFLISALCFAYPLRTIPTGEVLFLLVVTPVIHWLANVFAYRMKWKNVPW 171
GFLI+ALCFAYP++TIPTGEVLFLLV+TP+IHW AN+FAY+M WK VPW
Sbjct: 122 GFLIAALCFAYPVKTIPTGEVLFLLVITPLIHWGANIFAYKMGWKKVPW 170
>pir||G64499 hypothetical protein MJ1600 - Methanococcus jannaschii
>gi|1500497|gb|AAB99620.1| (U67600) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 177
Score = 161 bits (403), Expect = 5e-39
Identities = 81/172 (47%), Positives = 112/172 (65%), Gaps = 7/172 (4%)
Query: 7 IFEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGITVGTVVG 66
+F + WYILPAY AN+S + GGGTP+D GK + DGRR+ G+G T+RG GI GT+VG
Sbjct: 6 LFASLWYILPAYVANASACIFGGGTPVDLGKNFIDGRRLIGNGVTYRGCIFGILCGTLVG 65
Query: 67 TIQHLMFP-------GYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGL 119
IQ ++ +YG++ V +AF LS+GA+VGD +GSFIKRRLN+ RG PA L
Sbjct: 66 LIQGILVDFNIFNSLDFYGTVLDHVILAFFLSVGAIVGDAVGSFIKRRLNIERGKPAPLL 125
Query: 120 DQWGFLISALCFAYPLRTIPTGEVLFLLVVTPVIHWLANVFAYRMKWKNVPW 171
DQ F+I AL F Y + IP ++ + + T +H L N+ AY++ K+V W
Sbjct: 126 DQLDFVIGALAFGYIVAPIPYEMIIIICLFTVFVHLLGNIIAYKLGIKDVWW 177
>pir||A69211 conserved hypothetical protein MTH832 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621922|gb|AAB85330.1| (AE000860) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 209
Score = 139 bits (347), Expect = 2e-32
Identities = 73/163 (44%), Positives = 98/163 (59%), Gaps = 4/163 (2%)
Query: 7 IFEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGITVGTVVG 66
+ +++LPAY AN S +V GGG P+D G DGRR+ GDG TWRG G VG VVG
Sbjct: 49 VLYVIYFMLPAYMANISGLVFGGGKPLDMGITLADGRRLIGDGVTWRGTAAGTFVGLVVG 108
Query: 67 TIQHLMFPGYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLDQWGFLI 126
IQ L+ GS+ + V LL GAL+GD GSFIKRRL + RG PA LDQ F+
Sbjct: 109 IIQGLLS----GSIIIGVITGLLLGFGALMGDAAGSFIKRRLKIDRGRPAPILDQLDFVF 164
Query: 127 SALCFAYPLRTIPTGEVLFLLVVTPVIHWLANVFAYRMKWKNV 169
AL P+ +P ++ ++++T V+H AN+ AY + K+V
Sbjct: 165 GALILVSPIVVLPIDYIILIMLITLVLHLSANIIAYLLGMKDV 207
>gi|11499329 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448891|pir||C69467 conserved hypothetical protein
AF1740 - Archaeoglobus fulgidus
>gi|2648806|gb|AAB89505.1| (AE000982) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 179
Score = 138 bits (345), Expect = 3e-32
Identities = 77/175 (44%), Positives = 102/175 (58%), Gaps = 10/175 (5%)
Query: 7 IFEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGITVGTVVG 66
I + W +LP Y N+ V++GGGTPIDFGK + DG+RI GDGKTWRGF GG+ G +
Sbjct: 5 ILKTIWLLLPCYTPNNFAVLVGGGTPIDFGKTFVDGKRILGDGKTWRGFVGGVAGGVLTA 64
Query: 67 TIQH----LMFPGYYGSLKL--AVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLD 120
+Q+ L Y SL + FLL+ GA+ GDL GSFIKRR RG + +D
Sbjct: 65 NLQYAIEKLSGLAIYSSLPFNEFFTLTFLLAFGAMFGDLCGSFIKRRFGYERGSRFLIVD 124
Query: 121 QWGFLISALCFAY---PLRTIPTGEVLFL-LVVTPVIHWLANVFAYRMKWKNVPW 171
Q FL+ AL A P + T E++ L +++TP +H N AYR+ K VPW
Sbjct: 125 QLMFLLVALLIASLYPPFWKLFTAEIIALAVIITPALHMGINYIAYRLNLKEVPW 179
>emb|CAC11255.1| (AL445063) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 176
Score = 127 bits (317), Expect = 7e-29
Identities = 70/169 (41%), Positives = 97/169 (56%), Gaps = 12/169 (7%)
Query: 15 LPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGITVGTVVGTIQHLMFP 74
+PA ANS V+ GG ID GKK+ DGRRI G+GKT G+ GGI +GTV G I +L+
Sbjct: 8 IPALIANSGAVITGGHFIIDRGKKFIDGRRILGNGKTLSGYAGGIAIGTVTGFIIYLIST 67
Query: 75 ------GYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLDQWGFLISA 128
G YG+L A+ + F+++ G+L GD+ GSF+KRR+ + RG LDQW F + A
Sbjct: 68 LFNYALGTYGTLAEAIIIPFIMATGSLTGDIAGSFVKRRIGIDRGGKGGLLDQWPFALMA 127
Query: 129 LCFAYPLRT------IPTGEVLFLLVVTPVIHWLANVFAYRMKWKNVPW 171
F Y ++ +LV+ P IH N+ Y+M K+VPW
Sbjct: 128 FLFLYIFERPFFMYHYFYVTMIVILVIVPPIHRAVNIIGYKMHKKDVPW 176
>emb|CAB57527.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 166
Score = 123 bits (307), Expect = 1e-27
Identities = 70/158 (44%), Positives = 93/158 (58%), Gaps = 7/158 (4%)
Query: 15 LPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGITVGTVVGTIQHLMFP 74
LPA+ AN S + GTPIDFGK + DGRR+FGDGKT+ G +T GT VG I F
Sbjct: 15 LPAFVANGSGPFIKRGTPIDFGKNFVDGRRLFGDGKTFEGLIVALTFGTTVGVIISKFFT 74
Query: 75 GYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLDQWGFLISALCFAYP 134
+ ++FL SL A++GD+IG+FIKRRL +PRG +GLDQ F++ A
Sbjct: 75 AEW------TLISFLESLFAMIGDMIGAFIKRRLGIPRGGRVLGLDQLDFVLGASLILVL 128
Query: 135 LR-TIPTGEVLFLLVVTPVIHWLANVFAYRMKWKNVPW 171
+R I + LF+ + +H N AY +K KNVPW
Sbjct: 129 MRVNITWYQFLFICGLAFFLHQGTNYVAYLLKIKNVPW 166
>gb|AAK41073.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 166
Score = 123 bits (307), Expect = 1e-27
Identities = 70/158 (44%), Positives = 93/158 (58%), Gaps = 7/158 (4%)
Query: 15 LPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGITVGTVVGTIQHLMFP 74
LPA+ AN S + GTPIDFGK + DGRR+FGDGKT+ G +T GT VG I F
Sbjct: 15 LPAFVANGSGPFIKRGTPIDFGKNFVDGRRLFGDGKTFEGLIVALTFGTTVGVIISKFFT 74
Query: 75 GYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLDQWGFLISALCFAYP 134
+ ++FL SL A++GD+IG+FIKRRL +PRG +GLDQ F++ A
Sbjct: 75 AEW------TLISFLESLFAMIGDMIGAFIKRRLGIPRGGRVLGLDQLDFVLGASLILVL 128
Query: 135 LR-TIPTGEVLFLLVVTPVIHWLANVFAYRMKWKNVPW 171
+R I + LF+ + +H N AY +K KNVPW
Sbjct: 129 MRVNITWYQFLFICGLAFFLHQGTNYVAYLLKIKNVPW 166
>pir||C72737 hypothetical protein APE0433 - Aeropyrum pernix (strain K1)
>gi|5104075|dbj|BAA79391.1| (AP000059) 174aa long
hypothetical protein [Aeropyrum pernix]
Length = 174
Score = 113 bits (280), Expect = 1e-24
Identities = 69/166 (41%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 7 IFEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGITVGTVVG 66
I EA +LPA AN++PVV GG P+D G DGRR+ GDGKT G G G+ G
Sbjct: 14 ILEAIILMLPAMIANATPVVAGGRRPVDMGVVLPDGRRLLGDGKTIEGLLAGFAAGSAAG 73
Query: 67 TIQHLMFPGYYGSLKLAVGVAFLLSLGALVGDLIGSFIKRRLNMPRGYPAVGLDQWGFLI 126
+ L G++ LAV + ++LGAL GD+ GSF+KRRL + RG PA LDQ F +
Sbjct: 74 VLAALA----SGNMLLAVH-SPAIALGALAGDMAGSFVKRRLGIERGRPAPLLDQLDFYL 128
Query: 127 SALCFAYPLRTIPTGEV-LFLLVVTPVIHWLANVFAYRMKWKNVPW 171
AL + L T V + ++H AN+ AY + K VPW
Sbjct: 129 GALAVSIALGYTWTPRVAVEAAAAVLLLHLAANITAYLLGLKKVPW 174
>gb|AAG20259.1| (AE005101) Vng2119c [Halobacterium sp. NRC-1]
Length = 214
Score = 101 bits (248), Expect = 8e-21
Identities = 62/182 (34%), Positives = 91/182 (49%), Gaps = 12/182 (6%)
Query: 1 MHEMNPIFEAFWYILPAYFANSSPVVLGGGTPIDFGKKWRDGRRIFGDGKTWRGFFGGIT 60
M + + A W +LPAY N++ V+ GGG PID G+ GRR+ GDGKTWRG G
Sbjct: 34 MDLVGTVVVAVWAMLPAYVPNNAAVLAGGGRPIDGGRSL-GGRRLLGDGKTWRGTAVGTA 92
Query: 61 VGTVVGTIQHLMFPGYYGSLKLAV-----GVAFLLSLGALVGDLIGSFIKRRLNMPRGYP 115
G + + + P +L + + L+ GA+VGD+ SF+KRR RG
Sbjct: 93 AGVALAVALNALRPAAADALGVVLPAFPPAAMGTLAFGAMVGDIAASFLKRRTGRQRGAA 152
Query: 116 AVGLDQWGFLISALCF------AYPLRTIPTGEVLFLLVVTPVIHWLANVFAYRMKWKNV 169
+DQ F++ AL A+ T ++ + V+TP +H L N AY + K+
Sbjct: 153 FPVVDQLDFVVVALALTALAVPAWVGDTFGLPVLVTVAVLTPALHLLTNGIAYALGVKDE 212
Query: 170 PW 171
PW
Sbjct: 213 PW 214
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.148 0.502
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74009298
Number of Sequences: 2977
Number of extensions: 3379297
Number of successful extensions: 8220
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8200
Number of HSP's gapped (non-prelim): 10
length of query: 171
length of database: 189,106,746
effective HSP length: 43
effective length of query: 128
effective length of database: 163,371,805
effective search space: 20911591040
effective search space used: 20911591040
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 162 (67.5 bits)